Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78840.t1 | XP_024635709.1 | 99.6 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 2.30E-144 | 521.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78840.t1 | O04331 | 76.1 | 276 | 65 | 1 | 1 | 275 | 1 | 276 | 1.2e-109 | 397.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78840.t1 | B7FJH0 | 99.6 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 1.7e-144 | 521.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78840 | MS.gene055768 | PPI |
| MS.gene78840 | MS.gene066925 | PPI |
| MS.gene78840 | MS.gene92318 | PPI |
| MS.gene78840 | MS.gene68716 | PPI |
| MS.gene78840 | MS.gene59884 | PPI |
| MS.gene78840 | MS.gene88440 | PPI |
| MS.gene78840 | MS.gene024895 | PPI |
| MS.gene78840 | MS.gene99648 | PPI |
| MS.gene78840 | MS.gene063067 | PPI |
| MS.gene78840 | MS.gene015412 | PPI |
| MS.gene78840 | MS.gene067266 | PPI |
| MS.gene31416 | MS.gene78840 | PPI |
| MS.gene043467 | MS.gene78840 | PPI |
| MS.gene78840 | MS.gene56214 | PPI |
| MS.gene78840 | MS.gene59883 | PPI |
| MS.gene78840 | MS.gene028857 | PPI |
| MS.gene78840 | MS.gene91416 | PPI |
| MS.gene68113 | MS.gene78840 | PPI |
| MS.gene78840 | MS.gene80094 | PPI |
| MS.gene78840 | MS.gene61084 | PPI |
| MS.gene78840 | MS.gene016292 | PPI |
| MS.gene78840 | MS.gene014181 | PPI |
| MS.gene78840 | MS.gene000128 | PPI |
| MS.gene78840 | MS.gene016544 | PPI |
| MS.gene09764 | MS.gene78840 | PPI |
| MS.gene78840 | MS.gene043467 | PPI |
| MS.gene78840 | MS.gene063809 | PPI |
| MS.gene78840 | MS.gene009411 | PPI |
| MS.gene78840 | MS.gene058374 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78840.t1 | MTR_3g008250 | 99.640 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 0.0 | 561 |
| MS.gene78840.t1 | MTR_8g046300 | 88.768 | 276 | 30 | 1 | 1 | 275 | 1 | 276 | 0.0 | 502 |
| MS.gene78840.t1 | MTR_2g090760 | 51.786 | 280 | 127 | 4 | 3 | 278 | 11 | 286 | 1.83e-92 | 275 |
| MS.gene78840.t1 | MTR_4g078200 | 50.943 | 265 | 128 | 2 | 10 | 274 | 20 | 282 | 9.36e-89 | 266 |
| MS.gene78840.t1 | MTR_4g078200 | 54.795 | 219 | 97 | 2 | 56 | 274 | 5 | 221 | 3.93e-79 | 239 |
| MS.gene78840.t1 | MTR_5g093030 | 56.983 | 179 | 75 | 2 | 1 | 178 | 1 | 178 | 3.96e-62 | 194 |
| MS.gene78840.t1 | MTR_5g093040 | 61.538 | 117 | 35 | 1 | 1 | 117 | 2 | 108 | 3.91e-43 | 143 |
| MS.gene78840.t1 | MTR_6g004320 | 58.955 | 134 | 17 | 1 | 91 | 224 | 1 | 96 | 1.62e-41 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78840.t1 | AT5G40770 | 82.246 | 276 | 48 | 1 | 1 | 275 | 1 | 276 | 2.20e-170 | 472 |
| MS.gene78840.t1 | AT3G27280 | 80.287 | 279 | 54 | 1 | 1 | 278 | 1 | 279 | 2.70e-168 | 467 |
| MS.gene78840.t1 | AT3G27280 | 80.287 | 279 | 54 | 1 | 1 | 278 | 1 | 279 | 2.70e-168 | 467 |
| MS.gene78840.t1 | AT5G14300 | 65.799 | 269 | 65 | 2 | 11 | 278 | 4 | 246 | 4.00e-118 | 339 |
| MS.gene78840.t1 | AT1G03860 | 52.239 | 268 | 122 | 2 | 1 | 263 | 1 | 267 | 6.15e-92 | 274 |
| MS.gene78840.t1 | AT1G03860 | 52.239 | 268 | 122 | 2 | 1 | 263 | 1 | 267 | 6.15e-92 | 274 |
| MS.gene78840.t1 | AT4G28510 | 51.969 | 254 | 121 | 1 | 10 | 263 | 15 | 267 | 4.34e-89 | 266 |
| MS.gene78840.t1 | AT5G44140 | 52.157 | 255 | 121 | 1 | 10 | 264 | 15 | 268 | 7.95e-87 | 260 |
| MS.gene78840.t1 | AT2G20530 | 50.996 | 251 | 121 | 2 | 13 | 263 | 17 | 265 | 1.95e-85 | 257 |
| MS.gene78840.t1 | AT2G20530 | 50.996 | 251 | 121 | 2 | 13 | 263 | 17 | 265 | 1.95e-85 | 257 |
| MS.gene78840.t1 | AT1G03860 | 54.680 | 203 | 91 | 1 | 61 | 263 | 1 | 202 | 9.22e-74 | 225 |
Find 80 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGGTTTCGGCTCTTGTT+AGG | 0.240010 | 3.1:-3772610 | MS.gene78840:CDS |
| CCTAATGTCTCTTACCTTCC+TGG | 0.262402 | 3.1:-3770575 | MS.gene78840:CDS |
| TTAGGAGGATTGAGGCTTCC+AGG | 0.308845 | 3.1:-3770625 | MS.gene78840:CDS |
| TACGGACAGGCCTCAGGTTT+CGG | 0.330650 | 3.1:-3772621 | MS.gene78840:CDS |
| ATTCACCATCTGAAGATCTT+TGG | 0.335078 | 3.1:+3773909 | None:intergenic |
| GTAGGAAGACGTTGAGTATC+AGG | 0.347514 | 3.1:+3773862 | None:intergenic |
| CAGGGAAATTGCAGCTACTT+TGG | 0.371084 | 3.1:-3770606 | MS.gene78840:CDS |
| GCTATTACTCATTTGTCATA+TGG | 0.377706 | 3.1:-3772536 | MS.gene78840:CDS |
| GCTACTGCTGTCGCTGGTAT+GGG | 0.382931 | 3.1:-3770659 | MS.gene78840:CDS |
| TGCTACTGCTGTCGCTGGTA+TGG | 0.397223 | 3.1:-3770660 | MS.gene78840:CDS |
| GCACGCGTCGCATTCGGTCT+CGG | 0.424268 | 3.1:-3774126 | MS.gene78840:CDS |
| GTATGGGGTTGATTGAGCTT+AGG | 0.424876 | 3.1:-3770643 | MS.gene78840:CDS |
| TGCTGCTTGATTGCTTCCCA+TGG | 0.426968 | 3.1:+3774167 | None:intergenic |
| AGTTCCTTCACCAACTGATT+CGG | 0.429613 | 3.1:+3774014 | None:intergenic |
| GCAGAAGCAGGTGGCACAGC+AGG | 0.432263 | 3.1:-3770786 | MS.gene78840:CDS |
| TGTTGTGATGAAGGCAGAAC+AGG | 0.433925 | 3.1:-3770744 | MS.gene78840:CDS |
| CCAGGAAGGTAAGAGACATT+AGG | 0.436894 | 3.1:+3770575 | None:intergenic |
| GTCTAAGTTTGTTGTGATGA+AGG | 0.441318 | 3.1:-3770753 | MS.gene78840:CDS |
| AACCTAGCACGCGTCGCATT+CGG | 0.442167 | 3.1:-3774132 | MS.gene78840:CDS |
| TCAGGTTTCGGCTCTTGTTA+GGG | 0.442315 | 3.1:-3772609 | MS.gene78840:CDS |
| CCGAGATTCTGAACAATAGT+AGG | 0.443468 | 3.1:+3773844 | None:intergenic |
| CCTACTATTGTTCAGAATCT+CGG | 0.444298 | 3.1:-3773844 | MS.gene78840:CDS |
| AGAGGAGTTGACGGCGGTTG+CGG | 0.445413 | 3.1:+3774098 | None:intergenic |
| TAATGCTGATCAGCTTCTTA+CGG | 0.447509 | 3.1:-3772639 | MS.gene78840:CDS |
| GCTTCTTACGGACAGGCCTC+AGG | 0.453466 | 3.1:-3772627 | MS.gene78840:CDS |
| GTAATGATATTACCGATTGA+AGG | 0.458986 | 3.1:+3773796 | None:intergenic |
| AAGAAGAATATTGAAATCCT+TGG | 0.459418 | 3.1:+3772568 | None:intergenic |
| CACACATTCTCATCAATCTC+TGG | 0.473261 | 3.1:-3773934 | MS.gene78840:CDS |
| TGGGGTTGATTGAGCTTAGG+AGG | 0.474046 | 3.1:-3770640 | MS.gene78840:CDS |
| GGCGCGTTGGCCACCGTCGA+CGG | 0.487014 | 3.1:+3774068 | None:intergenic |
| ACAACTCTTAACAGGTAATG+AGG | 0.502279 | 3.1:-3772687 | MS.gene78840:intron |
| TCTGATGCTACTGCTGTCGC+TGG | 0.504294 | 3.1:-3770665 | MS.gene78840:CDS |
| CTGATCAGCTTCTTACGGAC+AGG | 0.519152 | 3.1:-3772634 | MS.gene78840:CDS |
| GATTGAGCTTAGGAGGATTG+AGG | 0.519488 | 3.1:-3770633 | MS.gene78840:CDS |
| TAGGGATAGTCTTGTGAGAA+GGG | 0.523460 | 3.1:-3772591 | MS.gene78840:CDS |
| GAACTCATTTCCTCATCCCA+TGG | 0.525793 | 3.1:-3773996 | MS.gene78840:CDS |
| GAGAAGGTTCTTCCTTCAAT+CGG | 0.527364 | 3.1:-3773808 | MS.gene78840:intron |
| CATATGGTGGTGAATTCTCT+AGG | 0.533003 | 3.1:-3772520 | MS.gene78840:intron |
| TTAGGGATAGTCTTGTGAGA+AGG | 0.533036 | 3.1:-3772592 | MS.gene78840:CDS |
| GAAGCAGGTGGCACAGCAGG+AGG | 0.538384 | 3.1:-3770783 | MS.gene78840:CDS |
| TGCTGCGATCATCCGTGCTG+AGG | 0.540308 | 3.1:-3770714 | MS.gene78840:CDS |
| CAGGGCTGTTGAGCAGAAGC+AGG | 0.541558 | 3.1:-3770798 | MS.gene78840:CDS |
| TAGGAGGATTGAGGCTTCCA+GGG | 0.548350 | 3.1:-3770624 | MS.gene78840:CDS |
| GGAGTTGACGGCGGTTGCGG+CGG | 0.549095 | 3.1:+3774101 | None:intergenic |
| GTAAGAGACATTAGGAGACT+TGG | 0.549961 | 3.1:+3770583 | None:intergenic |
| AACTCATTTCCTCATCCCAT+GGG | 0.550217 | 3.1:-3773995 | MS.gene78840:CDS |
| GACCGAATGCGACGCGTGCT+AGG | 0.562544 | 3.1:+3774130 | None:intergenic |
| GCTGCGATCATCCGTGCTGA+GGG | 0.565939 | 3.1:-3770713 | MS.gene78840:CDS |
| ATGAGCAAGTTCTTTCCACC+AGG | 0.569837 | 3.1:+3770557 | None:intergenic |
| GGCATCCTTTCCGAATCAGT+TGG | 0.571180 | 3.1:-3774024 | MS.gene78840:CDS |
| CAAAGTAGCTGCAATTTCCC+TGG | 0.573429 | 3.1:+3770607 | None:intergenic |
| GGTGTAGAGAGAGGAGTTGA+CGG | 0.577010 | 3.1:+3774089 | None:intergenic |
| TGGTGGAAAGAACTTGCTCA+TGG | 0.582905 | 3.1:-3770555 | MS.gene78840:CDS |
| TCCTCTCTCTACACCGTCGA+CGG | 0.584609 | 3.1:-3774081 | MS.gene78840:CDS |
| CTACTGCTGTCGCTGGTATG+GGG | 0.591102 | 3.1:-3770658 | MS.gene78840:CDS |
| TGTCGAAGAGGACGGCGCGT+TGG | 0.593060 | 3.1:+3774055 | None:intergenic |
| GCGGAATCTGTCGAAGAGGA+CGG | 0.594434 | 3.1:+3774047 | None:intergenic |
| GCAAGTTCTTTCCACCAGGA+AGG | 0.596545 | 3.1:+3770561 | None:intergenic |
| TAGTCTTGTGAGAAGGGCCA+AGG | 0.601437 | 3.1:-3772585 | MS.gene78840:CDS |
| GACTACCTTCATCAACGTGA+AGG | 0.602444 | 3.1:+3770524 | None:intergenic |
| CGGTCTTGAATATGACGAGA+AGG | 0.603923 | 3.1:-3773824 | MS.gene78840:CDS |
| GTGCGGATATCGAAGACGTA+AGG | 0.605844 | 3.1:+3773964 | None:intergenic |
| ATTACTCATTTGTCATATGG+TGG | 0.611449 | 3.1:-3772533 | MS.gene78840:CDS |
| CTTCACCAACTGATTCGGAA+AGG | 0.611882 | 3.1:+3774019 | None:intergenic |
| CTTTCCGAATCAGTTGGTGA+AGG | 0.612169 | 3.1:-3774018 | MS.gene78840:CDS |
| CGACGCGTGCTAGGTTTGAG+AGG | 0.614126 | 3.1:+3774139 | None:intergenic |
| GGCTGTTGAGCAGAAGCAGG+TGG | 0.617512 | 3.1:-3770795 | MS.gene78840:CDS |
| CATCACTTTCTCCCTCAGCA+CGG | 0.638713 | 3.1:+3770702 | None:intergenic |
| TGGTACCAAAGATCTTCAGA+TGG | 0.642264 | 3.1:-3773914 | MS.gene78840:CDS |
| ACCGTCGACGGTGTAGAGAG+AGG | 0.647102 | 3.1:+3774080 | None:intergenic |
| GTCCTCTTCGACAGATTCCG+CGG | 0.650808 | 3.1:-3774045 | MS.gene78840:CDS |
| TCTCTCTACACCGTCGACGG+TGG | 0.651078 | 3.1:-3774078 | MS.gene78840:CDS |
| CTGATTCGGAAAGGATGCCG+CGG | 0.651487 | 3.1:+3774028 | None:intergenic |
| TGGCACAGCAGGAGGCAGAG+AGG | 0.653245 | 3.1:-3770775 | MS.gene78840:CDS |
| TGCCGCGGAATCTGTCGAAG+AGG | 0.655098 | 3.1:+3774043 | None:intergenic |
| AATGTCTCTTACCTTCCTGG+TGG | 0.667494 | 3.1:-3770572 | MS.gene78840:CDS |
| CTAACAAGAGCCGAAACCTG+AGG | 0.700849 | 3.1:+3772611 | None:intergenic |
| GAGATTGATGAGAATGTGTG+AGG | 0.741623 | 3.1:+3773937 | None:intergenic |
| GTAGAGAGAGGAGTTGACGG+CGG | 0.788568 | 3.1:+3774092 | None:intergenic |
| AGAATGTGTGAGGACGAGTG+CGG | 0.814249 | 3.1:+3773947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAATAATAAATAGTTA+AGG | - | chr3.1:3771412-3771431 | MS.gene78840:intron | 10.0% |
| !! | AAAAAAACATATTTAAACCT+AGG | - | chr3.1:3771926-3771945 | MS.gene78840:intron | 15.0% |
| !! | AATTAAAAATATTGGTAAGT+TGG | + | chr3.1:3773644-3773663 | None:intergenic | 15.0% |
| !! | AGATTTAGATTACAAATATA+AGG | - | chr3.1:3773340-3773359 | MS.gene78840:intron | 15.0% |
| !! | GTTCTTGAAATTAAAAATAT+TGG | + | chr3.1:3773652-3773671 | None:intergenic | 15.0% |
| !! | TGATTTAGATTACAAATATA+AGG | - | chr3.1:3772980-3772999 | MS.gene78840:intron | 15.0% |
| !!! | CAATTGTTTTGTAATTTATA+GGG | - | chr3.1:3771864-3771883 | MS.gene78840:intron | 15.0% |
| !!! | TTTTTTTAATTAAGGCTAAA+GGG | + | chr3.1:3771131-3771150 | None:intergenic | 15.0% |
| !! | AATTTCAAGAACTAAGTTAT+TGG | - | chr3.1:3773660-3773679 | MS.gene78840:intron | 20.0% |
| !! | ATTAAAAAATTGTTGCGTTT+AGG | - | chr3.1:3770977-3770996 | MS.gene78840:intron | 20.0% |
| !! | CAAAAACAATCTAAATTTCA+TGG | + | chr3.1:3773250-3773269 | None:intergenic | 20.0% |
| !! | CTAATACTAAACATAACATT+TGG | - | chr3.1:3773425-3773444 | MS.gene78840:intron | 20.0% |
| !! | CTATACATAATACAATTTCA+AGG | + | chr3.1:3772866-3772885 | None:intergenic | 20.0% |
| !! | TAATTTAATTCATGACAAAC+AGG | + | chr3.1:3772352-3772371 | None:intergenic | 20.0% |
| !! | TTAAAAAATTGTTGCGTTTA+GGG | - | chr3.1:3770978-3770997 | MS.gene78840:intron | 20.0% |
| !!! | ACTGATAATGATTAAAGAAA+TGG | - | chr3.1:3772291-3772310 | MS.gene78840:intron | 20.0% |
| !!! | ATGAGTTCACATATTATTTT+TGG | - | chr3.1:3772583-3772602 | MS.gene78840:CDS | 20.0% |
| !!! | ATTTGAAATGATTGATTAGT+TGG | - | chr3.1:3773070-3773089 | MS.gene78840:intron | 20.0% |
| !!! | ATTTTTCCAATTAAAATTGC+AGG | - | chr3.1:3771591-3771610 | MS.gene78840:intron | 20.0% |
| !!! | GATGTTATGTATTTTATTTC+AGG | - | chr3.1:3773400-3773419 | MS.gene78840:intron | 20.0% |
| !!! | GCAATTGTTTTGTAATTTAT+AGG | - | chr3.1:3771863-3771882 | MS.gene78840:intron | 20.0% |
| !!! | GTTATTTTAGTCCATATATT+TGG | - | chr3.1:3772932-3772951 | MS.gene78840:intron | 20.0% |
| !!! | GTTTTTTTAATTAAGGCTAA+AGG | + | chr3.1:3771132-3771151 | None:intergenic | 20.0% |
| !!! | TAAATAGTTAAGGGTATAAT+AGG | - | chr3.1:3771422-3771441 | MS.gene78840:intron | 20.0% |
| !!! | TTTCTTTCTTTTTTGTTTCT+TGG | - | chr3.1:3772207-3772226 | MS.gene78840:intron | 20.0% |
| !!! | TTTGAAATGATTGATTAGTT+GGG | - | chr3.1:3773071-3773090 | MS.gene78840:intron | 20.0% |
| !!! | TTTTTCCAATTAAAATTGCA+GGG | - | chr3.1:3771592-3771611 | MS.gene78840:intron | 20.0% |
| ! | AAGAAGAATATTGAAATCCT+TGG | + | chr3.1:3772135-3772154 | None:intergenic | 25.0% |
| ! | AAGTAACATTAATGCTTCAT+TGG | - | chr3.1:3771447-3771466 | MS.gene78840:intron | 25.0% |
| ! | AATCATTATCAGTATCTACA+TGG | + | chr3.1:3772284-3772303 | None:intergenic | 25.0% |
| ! | AATTACTCTTTCCAATGAAA+TGG | + | chr3.1:3771357-3771376 | None:intergenic | 25.0% |
| ! | AATTTCAAGAACCAACTTAT+TGG | - | chr3.1:3773496-3773515 | MS.gene78840:intron | 25.0% |
| ! | ACAGTGTTTACTAAATTTAG+CGG | + | chr3.1:3771206-3771225 | None:intergenic | 25.0% |
| ! | GATATTCATGAATAATCCTT+AGG | - | chr3.1:3773011-3773030 | MS.gene78840:intron | 25.0% |
| ! | GTCAAAACGACTTATAATTT+GGG | + | chr3.1:3771335-3771354 | None:intergenic | 25.0% |
| ! | GTTGTTTAATTGTAAGATGT+TGG | - | chr3.1:3773269-3773288 | MS.gene78840:intron | 25.0% |
| ! | TAAATTTGACAACTCTTAAC+AGG | - | chr3.1:3772005-3772024 | MS.gene78840:intron | 25.0% |
| ! | TCAGATAAATTTGTAGTGTT+TGG | - | chr3.1:3771550-3771569 | MS.gene78840:intron | 25.0% |
| ! | TGGTGATATATAGTATATGA+GGG | - | chr3.1:3772824-3772843 | MS.gene78840:intron | 25.0% |
| ! | TGTAAAGTGACTTATACTTT+GGG | - | chr3.1:3771473-3771492 | MS.gene78840:intron | 25.0% |
| ! | TTGTAAAGTGACTTATACTT+TGG | - | chr3.1:3771472-3771491 | MS.gene78840:intron | 25.0% |
| ! | TTTGTGTAATTGTAAGATGT+TGG | - | chr3.1:3772910-3772929 | MS.gene78840:intron | 25.0% |
| !! | GATGTTAGGTATTTAATTTC+AGG | - | chr3.1:3773042-3773061 | MS.gene78840:intron | 25.0% |
| !! | GATTTGTTTGTTTAAGATTG+AGG | - | chr3.1:3772325-3772344 | MS.gene78840:intron | 25.0% |
| !! | GTTCTAAATAGCTACATATA+AGG | + | chr3.1:3771960-3771979 | None:intergenic | 25.0% |
| !! | TTGGTGATATATAGTATATG+AGG | - | chr3.1:3772823-3772842 | MS.gene78840:intron | 25.0% |
| !! | TTTAGAGCGACTTATAATTT+GGG | - | chr3.1:3771508-3771527 | MS.gene78840:intron | 25.0% |
| !! | TTTTCCAATTAAAATTGCAG+GGG | - | chr3.1:3771593-3771612 | MS.gene78840:intron | 25.0% |
| !! | TTTTGTAAAAAAGTCACGAT+TGG | - | chr3.1:3772486-3772505 | MS.gene78840:intron | 25.0% |
| !!! | CAATTTTCAAGGACAAAAAT+TGG | + | chr3.1:3773220-3773239 | None:intergenic | 25.0% |
| !!! | TTGATTTGCTACCAAATATA+TGG | + | chr3.1:3772946-3772965 | None:intergenic | 25.0% |
| AAGTTCTTAATCAGCTATAC+AGG | - | chr3.1:3772377-3772396 | MS.gene78840:intron | 30.0% | |
| ACAATTTCAAGGACCAAAAT+TGG | + | chr3.1:3772855-3772874 | None:intergenic | 30.0% | |
| ACTTGTGAACATGTATCAAA+CGG | - | chr3.1:3773106-3773125 | MS.gene78840:intron | 30.0% | |
| AGCTAACTAATAGCTTATAG+TGG | - | chr3.1:3771266-3771285 | MS.gene78840:intron | 30.0% | |
| AGTTTAGTCTATTGGTAAGT+TGG | + | chr3.1:3773817-3773836 | None:intergenic | 30.0% | |
| ATGAATCATGGAAGTGATTA+TGG | - | chr3.1:3772402-3772421 | MS.gene78840:intron | 30.0% | |
| ATGCTCATAGTTTAGTCTAT+TGG | + | chr3.1:3773825-3773844 | None:intergenic | 30.0% | |
| ATTACTCATTTGTCATATGG+TGG | - | chr3.1:3772167-3772186 | MS.gene78840:intron | 30.0% | |
| CAAAATGTAACTTCATGTGT+TGG | - | chr3.1:3772780-3772799 | MS.gene78840:intron | 30.0% | |
| CATATAAGGTTTATCATCCT+AGG | + | chr3.1:3771946-3771965 | None:intergenic | 30.0% | |
| CTCTGTATCATTCAATATCA+GGG | - | chr3.1:3773884-3773903 | MS.gene78840:CDS | 30.0% | |
| GCTATTACTCATTTGTCATA+TGG | - | chr3.1:3772164-3772183 | MS.gene78840:intron | 30.0% | |
| GGTCAAAACGACTTATAATT+TGG | + | chr3.1:3771336-3771355 | None:intergenic | 30.0% | |
| GTAAAGTGACTTATACTTTG+GGG | - | chr3.1:3771474-3771493 | MS.gene78840:intron | 30.0% | |
| GTAATTTATAGGGACTGAAT+AGG | - | chr3.1:3771874-3771893 | MS.gene78840:intron | 30.0% | |
| TAAAGAAATGGATGTAGTCA+TGG | - | chr3.1:3772303-3772322 | MS.gene78840:intron | 30.0% | |
| TAAGCTTATAGCTTATAAGC+TGG | + | chr3.1:3771773-3771792 | None:intergenic | 30.0% | |
| TATAGTGAGTTAGCATAGTT+AGG | + | chr3.1:3773723-3773742 | None:intergenic | 30.0% | |
| TATTTGAGTAGCAAATCAAG+AGG | - | chr3.1:3773307-3773326 | MS.gene78840:intron | 30.0% | |
| TCTCTGTATCATTCAATATC+AGG | - | chr3.1:3773883-3773902 | MS.gene78840:CDS | 30.0% | |
| TTACTCGTTAACTGGAAATT+TGG | - | chr3.1:3773789-3773808 | MS.gene78840:intron | 30.0% | |
| ! | ATATTTGGTAGCAAATCAAG+AGG | - | chr3.1:3772947-3772966 | MS.gene78840:intron | 30.0% |
| ! | CAAGTAACTTGTCATTAATG+TGG | - | chr3.1:3771979-3771998 | MS.gene78840:intron | 30.0% |
| ! | GTAATGATATTACCGATTGA+AGG | + | chr3.1:3770907-3770926 | None:intergenic | 30.0% |
| ! | TATGAGGGAATATCCAATTT+TGG | - | chr3.1:3772839-3772858 | MS.gene78840:intron | 30.0% |
| !! | CTTTAGAGCGACTTATAATT+TGG | - | chr3.1:3771507-3771526 | MS.gene78840:intron | 30.0% |
| !! | TTATTGGTGCTTGTTGATTT+AGG | - | chr3.1:3773676-3773695 | MS.gene78840:intron | 30.0% |
| !! | TTTACCCCTGCAATTTTAAT+TGG | + | chr3.1:3771600-3771619 | None:intergenic | 30.0% |
| ACAACTCTTAACAGGTAATG+AGG | - | chr3.1:3772013-3772032 | MS.gene78840:intron | 35.0% | |
| ACTATATATCACCAACACTG+AGG | + | chr3.1:3772818-3772837 | None:intergenic | 35.0% | |
| ATAACATCAAACCAGTCCTA+AGG | + | chr3.1:3773388-3773407 | None:intergenic | 35.0% | |
| ATGATACAGAGAATCAGTAC+AGG | + | chr3.1:3773875-3773894 | None:intergenic | 35.0% | |
| ATTCACCATCTGAAGATCTT+TGG | + | chr3.1:3770794-3770813 | None:intergenic | 35.0% | |
| CCTACTATTGTTCAGAATCT+CGG | - | chr3.1:3770856-3770875 | MS.gene78840:intron | 35.0% | |
| CTAACATCAAATCAGTCCTA+AGG | + | chr3.1:3773030-3773049 | None:intergenic | 35.0% | |
| CTCTTAACTTACTCGTTAAC+TGG | - | chr3.1:3773781-3773800 | MS.gene78840:intron | 35.0% | |
| CTTATCCACTCTTAGCAATA+AGG | - | chr3.1:3771242-3771261 | MS.gene78840:intron | 35.0% | |
| CTTGTGAACATGTATCAAAC+GGG | - | chr3.1:3773107-3773126 | MS.gene78840:intron | 35.0% | |
| GGTGATATATAGACTATACG+AGG | - | chr3.1:3773188-3773207 | MS.gene78840:intron | 35.0% | |
| TAATGCTGATCAGCTTCTTA+CGG | - | chr3.1:3772061-3772080 | MS.gene78840:intron | 35.0% | |
| TACAGTGAGTTAGCATAGTT+AGG | + | chr3.1:3773558-3773577 | None:intergenic | 35.0% | |
| TCTATATATCACCAACACTG+AGG | + | chr3.1:3773181-3773200 | None:intergenic | 35.0% | |
| TGACTATAAAAGACCCTGTT+TGG | + | chr3.1:3771748-3771767 | None:intergenic | 35.0% | |
| TTGATTCATGAGTAGTCCTT+AGG | - | chr3.1:3773369-3773388 | MS.gene78840:intron | 35.0% | |
| ! | ACTGCTAAACTAGCTTATTG+CGG | - | chr3.1:3771292-3771311 | MS.gene78840:intron | 35.0% |
| ! | ATGGCACTGTACAATTTTCA+AGG | + | chr3.1:3773231-3773250 | None:intergenic | 35.0% |
| ! | GACTTATAATTTGGGACTGA+GGG | - | chr3.1:3771516-3771535 | MS.gene78840:intron | 35.0% |
| ! | GCTTATTTCTTACTAGCGTA+TGG | - | chr3.1:3771066-3771085 | MS.gene78840:intron | 35.0% |
| !! | AGTCGTTTTGACCATTTCAT+TGG | - | chr3.1:3771343-3771362 | MS.gene78840:intron | 35.0% |
| !! | CTTAGGACTGATTTGATGTT+AGG | - | chr3.1:3773028-3773047 | MS.gene78840:intron | 35.0% |
| !! | GTCTAAGTTTGTTGTGATGA+AGG | - | chr3.1:3773947-3773966 | MS.gene78840:CDS | 35.0% |
| AACAACAGGCACCAATAAGT+TGG | + | chr3.1:3773510-3773529 | None:intergenic | 40.0% | |
| AACCCAACAAGCTAACATCA+GGG | - | chr3.1:3771833-3771852 | MS.gene78840:intron | 40.0% | |
| AACTCATTTCCTCATCCCAT+GGG | - | chr3.1:3770705-3770724 | MS.gene78840:CDS | 40.0% | |
| ACAGTTACCAAACACCAAAC+AGG | - | chr3.1:3771731-3771750 | MS.gene78840:intron | 40.0% | |
| AGCTACCTTATTGCTAAGAG+TGG | + | chr3.1:3771250-3771269 | None:intergenic | 40.0% | |
| AGTTCCTTCACCAACTGATT+CGG | + | chr3.1:3770689-3770708 | None:intergenic | 40.0% | |
| ATGACATGACATTCCTGAAG+TGG | - | chr3.1:3773843-3773862 | MS.gene78840:CDS | 40.0% | |
| CACACATTCTCATCAATCTC+TGG | - | chr3.1:3770766-3770785 | MS.gene78840:CDS | 40.0% | |
| CAGTTACCAAACACCAAACA+GGG | - | chr3.1:3771732-3771751 | MS.gene78840:intron | 40.0% | |
| CCGAGATTCTGAACAATAGT+AGG | + | chr3.1:3770859-3770878 | None:intergenic | 40.0% | |
| CTGAATGTAGCTTCATGTGT+CGG | - | chr3.1:3773132-3773151 | MS.gene78840:intron | 40.0% | |
| GAGAAGGTTCTTCCTTCAAT+CGG | - | chr3.1:3770892-3770911 | MS.gene78840:intron | 40.0% | |
| GAGATTGATGAGAATGTGTG+AGG | + | chr3.1:3770766-3770785 | None:intergenic | 40.0% | |
| GCTATACAGGCTATGAATCA+TGG | - | chr3.1:3772390-3772409 | MS.gene78840:intron | 40.0% | |
| GTAAGAGACATTAGGAGACT+TGG | + | chr3.1:3774120-3774139 | None:intergenic | 40.0% | |
| TGGTACCAAAGATCTTCAGA+TGG | - | chr3.1:3770786-3770805 | MS.gene78840:CDS | 40.0% | |
| TTAGGAGTGAAAGCTCAACT+TGG | + | chr3.1:3773705-3773724 | None:intergenic | 40.0% | |
| ! | CATATGGTGGTGAATTCTCT+AGG | - | chr3.1:3772180-3772199 | MS.gene78840:intron | 40.0% |
| ! | CGACTTATAATTTGGGACTG+AGG | - | chr3.1:3771515-3771534 | MS.gene78840:intron | 40.0% |
| ! | TATTGGTGCCTGTTGTTCTA+GGG | - | chr3.1:3773513-3773532 | MS.gene78840:intron | 40.0% |
| ! | TTATTGGTGCCTGTTGTTCT+AGG | - | chr3.1:3773512-3773531 | MS.gene78840:intron | 40.0% |
| !! | AAAAGACCCTGTTTGGTGTT+TGG | + | chr3.1:3771741-3771760 | None:intergenic | 40.0% |
| !! | TAGGGATAGTCTTGTGAGAA+GGG | - | chr3.1:3772109-3772128 | MS.gene78840:intron | 40.0% |
| !! | TGTTAGCTTGTTGGGTTGTA+TGG | + | chr3.1:3771830-3771849 | None:intergenic | 40.0% |
| !! | TTAGGGATAGTCTTGTGAGA+AGG | - | chr3.1:3772108-3772127 | MS.gene78840:intron | 40.0% |
| AACTTCGTCCCTAGAACAAC+AGG | + | chr3.1:3773524-3773543 | None:intergenic | 45.0% | |
| AATGTCTCTTACCTTCCTGG+TGG | - | chr3.1:3774128-3774147 | MS.gene78840:CDS | 45.0% | |
| ACCCAACAAGCTAACATCAG+GGG | - | chr3.1:3771834-3771853 | MS.gene78840:intron | 45.0% | |
| ATGAGCAAGTTCTTTCCACC+AGG | + | chr3.1:3774146-3774165 | None:intergenic | 45.0% | |
| CAAAGTAGCTGCAATTTCCC+TGG | + | chr3.1:3774096-3774115 | None:intergenic | 45.0% | |
| CAACCCAACAAGCTAACATC+AGG | - | chr3.1:3771832-3771851 | MS.gene78840:intron | 45.0% | |
| CAGGGAAATTGCAGCTACTT+TGG | - | chr3.1:3774094-3774113 | MS.gene78840:CDS | 45.0% | |
| CCAGGAAGGTAAGAGACATT+AGG | + | chr3.1:3774128-3774147 | None:intergenic | 45.0% | |
| CCTAATGTCTCTTACCTTCC+TGG | - | chr3.1:3774125-3774144 | MS.gene78840:CDS | 45.0% | |
| CGGTCTTGAATATGACGAGA+AGG | - | chr3.1:3770876-3770895 | MS.gene78840:intron | 45.0% | |
| GAACTCATTTCCTCATCCCA+TGG | - | chr3.1:3770704-3770723 | MS.gene78840:CDS | 45.0% | |
| GATTGAGCTTAGGAGGATTG+AGG | - | chr3.1:3774067-3774086 | MS.gene78840:CDS | 45.0% | |
| GTAGGAAGACGTTGAGTATC+AGG | + | chr3.1:3770841-3770860 | None:intergenic | 45.0% | |
| TCAGGTTTCGGCTCTTGTTA+GGG | - | chr3.1:3772091-3772110 | MS.gene78840:intron | 45.0% | |
| TCATGAGTAGTCCTTAGGAC+TGG | - | chr3.1:3773374-3773393 | MS.gene78840:intron | 45.0% | |
| TGTTGTGATGAAGGCAGAAC+AGG | - | chr3.1:3773956-3773975 | MS.gene78840:CDS | 45.0% | |
| ! | ACGTAAGGCTTTTGAACCCA+TGG | + | chr3.1:3770724-3770743 | None:intergenic | 45.0% |
| ! | CGTAAGGCTTTTGAACCCAT+GGG | + | chr3.1:3770723-3770742 | None:intergenic | 45.0% |
| ! | GGCGTGATTTTGGATCTGTT+TGG | + | chr3.1:3771809-3771828 | None:intergenic | 45.0% |
| ! | GTACAGGAAAATGCCACTTC+AGG | + | chr3.1:3773859-3773878 | None:intergenic | 45.0% |
| ! | GTATGGGGTTGATTGAGCTT+AGG | - | chr3.1:3774057-3774076 | MS.gene78840:CDS | 45.0% |
| ! | TGGGTTGTATGGCGTGATTT+TGG | + | chr3.1:3771819-3771838 | None:intergenic | 45.0% |
| ! | TGGTGGAAAGAACTTGCTCA+TGG | - | chr3.1:3774145-3774164 | MS.gene78840:CDS | 45.0% |
| ! | TGTTGCGTTTAGGGTCTGTT+TGG | - | chr3.1:3770987-3771006 | MS.gene78840:intron | 45.0% |
| !! | CTTCACCAACTGATTCGGAA+AGG | + | chr3.1:3770684-3770703 | None:intergenic | 45.0% |
| !! | CTTTCCGAATCAGTTGGTGA+AGG | - | chr3.1:3770682-3770701 | MS.gene78840:CDS | 45.0% |
| !! | TTCATGTGTCGGTGTCATGT+TGG | - | chr3.1:3773143-3773162 | MS.gene78840:intron | 45.0% |
| !! | AAAAAAAAAAAAAAATATCA+TGG | + | chr3.1:3772891-3772910 | None:intergenic | 5.0% |
| !! | AAAAAATAATAAATAGTTAA+GGG | - | chr3.1:3771413-3771432 | MS.gene78840:intron | 5.0% |
| !!! | AATTATTGTTTTTTTAATTA+AGG | + | chr3.1:3771139-3771158 | None:intergenic | 5.0% |
| AGAATGTGTGAGGACGAGTG+CGG | + | chr3.1:3770756-3770775 | None:intergenic | 50.0% | |
| CATCACTTTCTCCCTCAGCA+CGG | + | chr3.1:3774001-3774020 | None:intergenic | 50.0% | |
| CTAACAAGAGCCGAAACCTG+AGG | + | chr3.1:3772092-3772111 | None:intergenic | 50.0% | |
| CTCAGGTTTCGGCTCTTGTT+AGG | - | chr3.1:3772090-3772109 | MS.gene78840:intron | 50.0% | |
| CTGATCAGCTTCTTACGGAC+AGG | - | chr3.1:3772066-3772085 | MS.gene78840:intron | 50.0% | |
| GCAAGTTCTTTCCACCAGGA+AGG | + | chr3.1:3774142-3774161 | None:intergenic | 50.0% | |
| GGCATCCTTTCCGAATCAGT+TGG | - | chr3.1:3770676-3770695 | MS.gene78840:CDS | 50.0% | |
| GGTGTAGAGAGAGGAGTTGA+CGG | + | chr3.1:3770614-3770633 | None:intergenic | 50.0% | |
| GTGCGGATATCGAAGACGTA+AGG | + | chr3.1:3770739-3770758 | None:intergenic | 50.0% | |
| TAGGAGGATTGAGGCTTCCA+GGG | - | chr3.1:3774076-3774095 | MS.gene78840:CDS | 50.0% | |
| TTAGGAGGATTGAGGCTTCC+AGG | - | chr3.1:3774075-3774094 | MS.gene78840:CDS | 50.0% | |
| ! | GCTTTTGAACCCATGGGATG+AGG | + | chr3.1:3770717-3770736 | None:intergenic | 50.0% |
| ! | TGGGGTTGATTGAGCTTAGG+AGG | - | chr3.1:3774060-3774079 | MS.gene78840:CDS | 50.0% |
| !! | AGCCCCTGATGTTAGCTTGT+TGG | + | chr3.1:3771839-3771858 | None:intergenic | 50.0% |
| !! | GCCCCTGATGTTAGCTTGTT+GGG | + | chr3.1:3771838-3771857 | None:intergenic | 50.0% |
| !! | TAGTCTTGTGAGAAGGGCCA+AGG | - | chr3.1:3772115-3772134 | MS.gene78840:intron | 50.0% |
| AACCTAGCACGCGTCGCATT+CGG | - | chr3.1:3770568-3770587 | MS.gene78840:CDS | 55.0% | |
| CACTAGACACGCCTCAGTGT+TGG | - | chr3.1:3772804-3772823 | MS.gene78840:intron | 55.0% | |
| CTACTGCTGTCGCTGGTATG+GGG | - | chr3.1:3774042-3774061 | MS.gene78840:CDS | 55.0% | |
| GCGGAATCTGTCGAAGAGGA+CGG | + | chr3.1:3770656-3770675 | None:intergenic | 55.0% | |
| GCTACTGCTGTCGCTGGTAT+GGG | - | chr3.1:3774041-3774060 | MS.gene78840:CDS | 55.0% | |
| GTAGAGAGAGGAGTTGACGG+CGG | + | chr3.1:3770611-3770630 | None:intergenic | 55.0% | |
| GTCCTCTTCGACAGATTCCG+CGG | - | chr3.1:3770655-3770674 | MS.gene78840:CDS | 55.0% | |
| TACGGACAGGCCTCAGGTTT+CGG | - | chr3.1:3772079-3772098 | MS.gene78840:intron | 55.0% | |
| TCCTCTCTCTACACCGTCGA+CGG | - | chr3.1:3770619-3770638 | MS.gene78840:CDS | 55.0% | |
| TCTGATGCTACTGCTGTCGC+TGG | - | chr3.1:3774035-3774054 | MS.gene78840:CDS | 55.0% | |
| TGCTACTGCTGTCGCTGGTA+TGG | - | chr3.1:3774040-3774059 | MS.gene78840:CDS | 55.0% | |
| !! | CTGATTCGGAAAGGATGCCG+CGG | + | chr3.1:3770675-3770694 | None:intergenic | 55.0% |
| ACCGTCGACGGTGTAGAGAG+AGG | + | chr3.1:3770623-3770642 | None:intergenic | 60.0% | |
| AGAGGAGTTGACGGCGGTTG+CGG | + | chr3.1:3770605-3770624 | None:intergenic | 60.0% | |
| CACTCGACACGCCTCAGTGT+TGG | - | chr3.1:3773167-3773186 | MS.gene78840:intron | 60.0% | |
| CAGGGCTGTTGAGCAGAAGC+AGG | - | chr3.1:3773902-3773921 | MS.gene78840:CDS | 60.0% | |
| CGACGCGTGCTAGGTTTGAG+AGG | + | chr3.1:3770564-3770583 | None:intergenic | 60.0% | |
| GCTGCGATCATCCGTGCTGA+GGG | - | chr3.1:3773987-3774006 | MS.gene78840:CDS | 60.0% | |
| GCTTCTTACGGACAGGCCTC+AGG | - | chr3.1:3772073-3772092 | MS.gene78840:intron | 60.0% | |
| GGCTGTTGAGCAGAAGCAGG+TGG | - | chr3.1:3773905-3773924 | MS.gene78840:CDS | 60.0% | |
| TCTCTCTACACCGTCGACGG+TGG | - | chr3.1:3770622-3770641 | MS.gene78840:CDS | 60.0% | |
| TGCCGCGGAATCTGTCGAAG+AGG | + | chr3.1:3770660-3770679 | None:intergenic | 60.0% | |
| TGCTGCGATCATCCGTGCTG+AGG | - | chr3.1:3773986-3774005 | MS.gene78840:CDS | 60.0% | |
| GAAGCAGGTGGCACAGCAGG+AGG | - | chr3.1:3773917-3773936 | MS.gene78840:CDS | 65.0% | |
| GACCGAATGCGACGCGTGCT+AGG | + | chr3.1:3770573-3770592 | None:intergenic | 65.0% | |
| GCACGCGTCGCATTCGGTCT+CGG | - | chr3.1:3770574-3770593 | MS.gene78840:CDS | 65.0% | |
| GCAGAAGCAGGTGGCACAGC+AGG | - | chr3.1:3773914-3773933 | MS.gene78840:CDS | 65.0% | |
| TGGCACAGCAGGAGGCAGAG+AGG | - | chr3.1:3773925-3773944 | MS.gene78840:CDS | 65.0% | |
| TGTCGAAGAGGACGGCGCGT+TGG | + | chr3.1:3770648-3770667 | None:intergenic | 65.0% | |
| GGAGTTGACGGCGGTTGCGG+CGG | + | chr3.1:3770602-3770621 | None:intergenic | 70.0% | |
| ! | GGCGCGTTGGCCACCGTCGA+CGG | + | chr3.1:3770635-3770654 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 3770535 | 3774187 | 3770535 | ID=MS.gene78840 |
| chr3.1 | mRNA | 3770535 | 3774187 | 3770535 | ID=MS.gene78840.t1;Parent=MS.gene78840 |
| chr3.1 | exon | 3773809 | 3774187 | 3773809 | ID=MS.gene78840.t1.exon1;Parent=MS.gene78840.t1 |
| chr3.1 | CDS | 3773809 | 3774187 | 3773809 | ID=cds.MS.gene78840.t1;Parent=MS.gene78840.t1 |
| chr3.1 | exon | 3772521 | 3772695 | 3772521 | ID=MS.gene78840.t1.exon2;Parent=MS.gene78840.t1 |
| chr3.1 | CDS | 3772521 | 3772695 | 3772521 | ID=cds.MS.gene78840.t1;Parent=MS.gene78840.t1 |
| chr3.1 | exon | 3770535 | 3770817 | 3770535 | ID=MS.gene78840.t1.exon3;Parent=MS.gene78840.t1 |
| chr3.1 | CDS | 3770535 | 3770817 | 3770535 | ID=cds.MS.gene78840.t1;Parent=MS.gene78840.t1 |
| Gene Sequence |
| Protein sequence |
