Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018076.t1 | XP_013449710.1 | 100 | 100 | 0 | 0 | 1 | 100 | 1 | 100 | 1.90E-47 | 198.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018076.t1 | Q9SY09 | 92.0 | 100 | 8 | 0 | 1 | 100 | 1 | 100 | 5.1e-46 | 184.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018076.t1 | I3SQE6 | 100.0 | 100 | 0 | 0 | 1 | 100 | 1 | 100 | 1.3e-47 | 198.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050303 | MS.gene018076 | PPI |
| MS.gene013607 | MS.gene018076 | PPI |
| MS.gene82776 | MS.gene018076 | PPI |
| MS.gene007200 | MS.gene018076 | PPI |
| MS.gene06729 | MS.gene018076 | PPI |
| MS.gene032681 | MS.gene018076 | PPI |
| MS.gene030697 | MS.gene018076 | PPI |
| MS.gene018076 | MS.gene062632 | PPI |
| MS.gene069779 | MS.gene018076 | PPI |
| MS.gene06946 | MS.gene018076 | PPI |
| MS.gene70292 | MS.gene018076 | PPI |
| MS.gene58148 | MS.gene018076 | PPI |
| MS.gene24692 | MS.gene018076 | PPI |
| MS.gene053099 | MS.gene018076 | PPI |
| MS.gene28172 | MS.gene018076 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018076.t1 | MTR_7g094680 | 100.000 | 115 | 0 | 0 | 1 | 115 | 1 | 115 | 8.92e-78 | 224 |
| MS.gene018076.t1 | MTR_1g072370 | 99.130 | 115 | 0 | 1 | 1 | 115 | 1 | 114 | 2.49e-75 | 218 |
| MS.gene018076.t1 | MTR_8g092200 | 28.070 | 114 | 76 | 2 | 4 | 114 | 9 | 119 | 8.94e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018076.t1 | AT4G02840 | 92.857 | 98 | 7 | 0 | 1 | 98 | 1 | 98 | 1.80e-61 | 184 |
| MS.gene018076.t1 | AT3G07590 | 91.579 | 95 | 8 | 0 | 1 | 95 | 1 | 95 | 8.02e-60 | 179 |
| MS.gene018076.t1 | AT3G07590 | 91.579 | 95 | 8 | 0 | 1 | 95 | 1 | 95 | 8.02e-60 | 179 |
| MS.gene018076.t1 | AT4G02840 | 84.259 | 108 | 7 | 1 | 1 | 98 | 1 | 108 | 3.15e-58 | 176 |
| MS.gene018076.t1 | AT3G07590 | 87.879 | 66 | 8 | 0 | 30 | 95 | 4 | 69 | 4.39e-38 | 124 |
| MS.gene018076.t1 | AT1G20580 | 29.245 | 106 | 72 | 1 | 4 | 109 | 9 | 111 | 3.11e-12 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCTTTGGGGCGAGGACG+GGG | 0.284771 | 7.1:-13276556 | MS.gene018076:CDS |
| GTACCAGCAGTTGGCTTCTT+AGG | 0.317812 | 7.1:+13276695 | None:intergenic |
| CCCCTTTAGAGTTAGCTTAA+CGG | 0.355184 | 7.1:+13276835 | None:intergenic |
| ACCGTTAAGCTAACTCTAAA+GGG | 0.355730 | 7.1:-13276836 | MS.gene018076:CDS |
| CTTCAACAAGTAAAGTTTCA+AGG | 0.362204 | 7.1:+13276735 | None:intergenic |
| CTGAGATGATCCAAAGTAAC+TGG | 0.363042 | 7.1:+13276806 | None:intergenic |
| ATTGCAGGAGGAAAGCCTTT+GGG | 0.380608 | 7.1:-13276568 | MS.gene018076:intron |
| AAAGCCTTTGGGGCGAGGAC+GGG | 0.388156 | 7.1:-13276557 | MS.gene018076:CDS |
| AAGAATGGTACTATTGTTCA+TGG | 0.396668 | 7.1:-13278812 | MS.gene018076:CDS |
| CGCGGTCGTGGACGCGGTCG+TGG | 0.399250 | 7.1:-13276526 | MS.gene018076:CDS |
| GTTTCAAGGTTCAAGCTGTC+AGG | 0.435597 | 7.1:+13276749 | None:intergenic |
| AATTGCAGGAGGAAAGCCTT+TGG | 0.442871 | 7.1:-13276569 | MS.gene018076:intron |
| GAAAGCCTTTGGGGCGAGGA+CGG | 0.445123 | 7.1:-13276558 | MS.gene018076:CDS |
| CGAGGACGCGGTCGTGGACG+CGG | 0.450923 | 7.1:-13276532 | MS.gene018076:CDS |
| AACCGTTAAGCTAACTCTAA+AGG | 0.451979 | 7.1:-13276837 | MS.gene018076:CDS |
| GTGATACCTAACGAGCTTCA+TGG | 0.454978 | 7.1:+13278957 | None:intergenic |
| CCACCACCATGAAGCTCGTT+AGG | 0.465256 | 7.1:-13278963 | None:intergenic |
| AGCCTTTGGGGCGAGGACGG+GGG | 0.474600 | 7.1:-13276555 | MS.gene018076:CDS |
| GGAGGAAAGCCTTTGGGGCG+AGG | 0.495880 | 7.1:-13276562 | MS.gene018076:CDS |
| TACTTGTTGAAGAAGCTCCT+AGG | 0.498295 | 7.1:-13276724 | MS.gene018076:CDS |
| ACTTGTTGAAGAAGCTCCTA+GGG | 0.502700 | 7.1:-13276723 | MS.gene018076:CDS |
| GGCTTCTTAGGCTTGACCCT+AGG | 0.525010 | 7.1:+13276707 | None:intergenic |
| GTCTCAATCGAGTTGAAGAA+TGG | 0.539433 | 7.1:-13278827 | MS.gene018076:CDS |
| ATTGTTCATGGCACTATCAC+AGG | 0.543560 | 7.1:-13278800 | MS.gene018076:intron |
| AAGCCTAAGAAGCCAACTGC+TGG | 0.548844 | 7.1:-13276698 | MS.gene018076:intron |
| TTGCAGGAGGAAAGCCTTTG+GGG | 0.577723 | 7.1:-13276567 | MS.gene018076:intron |
| ATTCTTCAACTCGATTGAGA+CGG | 0.606708 | 7.1:+13278829 | None:intergenic |
| TTGGATCATCTCAGTGTGAG+AGG | 0.610982 | 7.1:-13276797 | MS.gene018076:CDS |
| CAAGGTTCAAGCTGTCAGGA+AGG | 0.613711 | 7.1:+13276753 | None:intergenic |
| CCGTTAAGCTAACTCTAAAG+GGG | 0.635466 | 7.1:-13276835 | MS.gene018076:CDS |
| TCGTATACAGTACCAGCAGT+TGG | 0.655537 | 7.1:+13276686 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATTA+GGG | + | chr7.1:13276781-13276800 | None:intergenic | 0.0% |
| !! | TAATAATAATAATAATAATT+AGG | + | chr7.1:13276782-13276801 | None:intergenic | 0.0% |
| !! | ATAATAATAATAGAGAAAAT+AGG | + | chr7.1:13276996-13277015 | None:intergenic | 10.0% |
| !! | AAGATTACCAAAAATATATA+CGG | + | chr7.1:13277977-13277996 | None:intergenic | 15.0% |
| !! | ACAATTAGTATACAAAAATA+TGG | + | chr7.1:13278052-13278071 | None:intergenic | 15.0% |
| !! | TTTAAATACTTTCTTATTCT+TGG | - | chr7.1:13277783-13277802 | MS.gene018076:intron | 15.0% |
| !!! | TACAAATTATGTTTTGATTA+TGG | - | chr7.1:13278001-13278020 | MS.gene018076:intron | 15.0% |
| !! | ATTAAAAAGTGAATGCATAT+CGG | - | chr7.1:13278472-13278491 | MS.gene018076:intron | 20.0% |
| !! | TATTATTACTACGAGTTTAA+TGG | - | chr7.1:13276815-13276834 | MS.gene018076:CDS | 20.0% |
| !! | TCATCAATTGTAAGTTTAAA+AGG | - | chr7.1:13278250-13278269 | MS.gene018076:intron | 20.0% |
| !!! | AAAGTTTTGATTTTAATTGC+AGG | - | chr7.1:13278891-13278910 | MS.gene018076:intron | 20.0% |
| !!! | TTTTTATCTTGCTTTAGAAT+AGG | - | chr7.1:13277679-13277698 | MS.gene018076:intron | 20.0% |
| ! | AAAAAATAAGCCAATCCAAT+TGG | - | chr7.1:13277493-13277512 | MS.gene018076:intron | 25.0% |
| ! | AAAAATAAGCCAATCCAATT+GGG | - | chr7.1:13277494-13277513 | MS.gene018076:intron | 25.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | + | chr7.1:13277303-13277322 | None:intergenic | 25.0% |
| ! | AAATTAGGGTTTAAGAAAAG+CGG | + | chr7.1:13276723-13276742 | None:intergenic | 25.0% |
| ! | AACAGTAAACAAGAACAAAA+AGG | + | chr7.1:13276552-13276571 | None:intergenic | 25.0% |
| ! | AAGCATGTTTGATAAACTAA+TGG | - | chr7.1:13278075-13278094 | MS.gene018076:intron | 25.0% |
| ! | ACAGTAAACAAGAACAAAAA+GGG | + | chr7.1:13276551-13276570 | None:intergenic | 25.0% |
| ! | ACTGTCATATAGAAAATAAC+AGG | + | chr7.1:13277249-13277268 | None:intergenic | 25.0% |
| ! | ATTACTTGTACAACATATCT+AGG | - | chr7.1:13277276-13277295 | MS.gene018076:intron | 25.0% |
| ! | ATTAGGGTTTAACAAAAATG+TGG | + | chr7.1:13276765-13276784 | None:intergenic | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | + | chr7.1:13277304-13277323 | None:intergenic | 25.0% |
| ! | CCCACTAAATTAAGAAAAAA+GGG | + | chr7.1:13277540-13277559 | None:intergenic | 25.0% |
| ! | CTGTCATATAGAAAATAACA+GGG | + | chr7.1:13277248-13277267 | None:intergenic | 25.0% |
| ! | GAAGTTGTTCGTAATATTAT+AGG | + | chr7.1:13277185-13277204 | None:intergenic | 25.0% |
| ! | GATTGTTATCTATGTATTTC+TGG | - | chr7.1:13278863-13278882 | MS.gene018076:intron | 25.0% |
| ! | GTTTAAAAACAGATCTATTG+TGG | + | chr7.1:13277084-13277103 | None:intergenic | 25.0% |
| ! | TGAATCCTTGTATTCTAAAT+TGG | - | chr7.1:13278389-13278408 | MS.gene018076:intron | 25.0% |
| ! | TTACTTGTACAACATATCTA+GGG | - | chr7.1:13277277-13277296 | MS.gene018076:intron | 25.0% |
| ! | TTTAATACAAGGAAATTCCT+CGG | + | chr7.1:13278458-13278477 | None:intergenic | 25.0% |
| ! | TTTATTTCATAAGCTTGTCA+AGG | + | chr7.1:13277437-13277456 | None:intergenic | 25.0% |
| !! | ATTAGTTTATCAAACATGCT+TGG | + | chr7.1:13278076-13278095 | None:intergenic | 25.0% |
| !! | GTGCTTAATTTGATTGTATA+TGG | + | chr7.1:13278436-13278455 | None:intergenic | 25.0% |
| !! | TATTGCCAATTTAGAATACA+AGG | + | chr7.1:13278397-13278416 | None:intergenic | 25.0% |
| !!! | CAATAGATCTGTTTTTAAAC+TGG | - | chr7.1:13277084-13277103 | MS.gene018076:intron | 25.0% |
| !!! | CCCTTTTTTCTTAATTTAGT+GGG | - | chr7.1:13277537-13277556 | MS.gene018076:intron | 25.0% |
| !!! | TATTTTTCCTTGCTTTTCTT+TGG | - | chr7.1:13277704-13277723 | MS.gene018076:intron | 25.0% |
| !!! | TCCCTTTTTTCTTAATTTAG+TGG | - | chr7.1:13277536-13277555 | MS.gene018076:intron | 25.0% |
| !!! | TGCATTCACTTTTTAATACA+AGG | + | chr7.1:13278469-13278488 | None:intergenic | 25.0% |
| AACAATCCAACTAGACATAA+TGG | + | chr7.1:13278850-13278869 | None:intergenic | 30.0% | |
| AAGAATGGTACTATTGTTCA+TGG | - | chr7.1:13276662-13276681 | MS.gene018076:intron | 30.0% | |
| AAGGGAATCCATATTCTATT+AGG | + | chr7.1:13277522-13277541 | None:intergenic | 30.0% | |
| AATATCACATTTACCATGCA+AGG | + | chr7.1:13277813-13277832 | None:intergenic | 30.0% | |
| ACCAAAAATATATACGGCAA+AGG | + | chr7.1:13277971-13277990 | None:intergenic | 30.0% | |
| ACTTACTAATCCTAACTTTC+CGG | - | chr7.1:13278183-13278202 | MS.gene018076:intron | 30.0% | |
| AGGGAATCCATATTCTATTA+GGG | + | chr7.1:13277521-13277540 | None:intergenic | 30.0% | |
| ATTTGACATGAGCTGTTAAT+TGG | - | chr7.1:13277150-13277169 | MS.gene018076:intron | 30.0% | |
| CAAAGCATAGAGCAAAATTA+GGG | + | chr7.1:13276737-13276756 | None:intergenic | 30.0% | |
| CTTCAACAAGTAAAGTTTCA+AGG | + | chr7.1:13278742-13278761 | None:intergenic | 30.0% | |
| GCCCACTAAATTAAGAAAAA+AGG | + | chr7.1:13277541-13277560 | None:intergenic | 30.0% | |
| ! | AATTGATGACCACATAATTC+TGG | + | chr7.1:13278239-13278258 | None:intergenic | 30.0% |
| ! | ATTGATGACCACATAATTCT+GGG | + | chr7.1:13278238-13278257 | None:intergenic | 30.0% |
| ! | GAAAGTTAGGATTAGTAAGT+TGG | + | chr7.1:13278183-13278202 | None:intergenic | 30.0% |
| ! | TCCTTTGCCGTATATATTTT+TGG | - | chr7.1:13277967-13277986 | MS.gene018076:intron | 30.0% |
| !! | TCTTGCCTTTTATTTGTGAT+GGG | - | chr7.1:13278524-13278543 | MS.gene018076:intron | 30.0% |
| !! | TTCTTGCCTTTTATTTGTGA+TGG | - | chr7.1:13278523-13278542 | MS.gene018076:intron | 30.0% |
| !!! | GTTTTGATTTTAATTGCAGG+AGG | - | chr7.1:13278894-13278913 | MS.gene018076:intron | 30.0% |
| !!! | TACATACGAAGCATTGTTTT+GGG | - | chr7.1:13277054-13277073 | MS.gene018076:intron | 30.0% |
| !!! | TTACATACGAAGCATTGTTT+TGG | - | chr7.1:13277053-13277072 | MS.gene018076:intron | 30.0% |
| AAAATTTACCAGTAGACCCT+AGG | - | chr7.1:13277634-13277653 | MS.gene018076:intron | 35.0% | |
| AAACAAGAACAAAAAGGGAG+AGG | + | chr7.1:13276546-13276565 | None:intergenic | 35.0% | |
| AACCGTTAAGCTAACTCTAA+AGG | - | chr7.1:13278637-13278656 | MS.gene018076:intron | 35.0% | |
| AAGTTGGAAAGCTACACTAA+TGG | + | chr7.1:13278167-13278186 | None:intergenic | 35.0% | |
| AATCTAACAAGAAGCTACCT+AGG | + | chr7.1:13277654-13277673 | None:intergenic | 35.0% | |
| ACCGTTAAGCTAACTCTAAA+GGG | - | chr7.1:13278638-13278657 | MS.gene018076:intron | 35.0% | |
| AGAAAACAATGAGCTGACAA+CGG | + | chr7.1:13277942-13277961 | None:intergenic | 35.0% | |
| ATCTAACAAGAAGCTACCTA+GGG | + | chr7.1:13277653-13277672 | None:intergenic | 35.0% | |
| ATTCTTCAACTCGATTGAGA+CGG | + | chr7.1:13276648-13276667 | None:intergenic | 35.0% | |
| GCAAAGCATAGAGCAAAATT+AGG | + | chr7.1:13276738-13276757 | None:intergenic | 35.0% | |
| GGGAATCCATATTCTATTAG+GGG | + | chr7.1:13277520-13277539 | None:intergenic | 35.0% | |
| GTTTAAAAGGTCCAATGTGT+AGG | - | chr7.1:13278263-13278282 | MS.gene018076:intron | 35.0% | |
| TATTCTTGGTTATCCTTGCA+TGG | - | chr7.1:13277797-13277816 | MS.gene018076:intron | 35.0% | |
| TGTCAAATGTCGAAATCTTG+CGG | + | chr7.1:13277138-13277157 | None:intergenic | 35.0% | |
| ! | ATAATTCTGGGGGATTCAAT+TGG | + | chr7.1:13278226-13278245 | None:intergenic | 35.0% |
| ! | GAGAAACAGTTGACTTCAAT+TGG | + | chr7.1:13276879-13276898 | None:intergenic | 35.0% |
| ! | GGAATTCCAAGTAAGTTGAA+GGG | + | chr7.1:13277117-13277136 | None:intergenic | 35.0% |
| ! | GTGAACATGATTTGTGAGTA+TGG | - | chr7.1:13278366-13278385 | MS.gene018076:intron | 35.0% |
| ! | TACAATCAAATTAAGCACCG+AGG | - | chr7.1:13278438-13278457 | MS.gene018076:intron | 35.0% |
| ! | TACTAATTAGCTCTTCACCT+TGG | + | chr7.1:13277216-13277235 | None:intergenic | 35.0% |
| ! | TTGATGACCACATAATTCTG+GGG | + | chr7.1:13278237-13278256 | None:intergenic | 35.0% |
| !! | AGTTCTTGATTTGTCGTTTC+TGG | - | chr7.1:13277747-13277766 | MS.gene018076:intron | 35.0% |
| !! | CTTGCCTTTTATTTGTGATG+GGG | - | chr7.1:13278525-13278544 | MS.gene018076:intron | 35.0% |
| AAGAACAAAAAGGGAGAGGA+AGG | + | chr7.1:13276542-13276561 | None:intergenic | 40.0% | |
| AATGGAACAGGCATTAGAGA+TGG | + | chr7.1:13278149-13278168 | None:intergenic | 40.0% | |
| ACTGTCCGATTGTACAGATA+AGG | + | chr7.1:13277881-13277900 | None:intergenic | 40.0% | |
| ACTTCTCCCTTCAACTTACT+TGG | - | chr7.1:13277108-13277127 | MS.gene018076:intron | 40.0% | |
| ATCAAATCACCCCACTGTAA+TGG | + | chr7.1:13276911-13276930 | None:intergenic | 40.0% | |
| ATGGAACAGGCATTAGAGAT+GGG | + | chr7.1:13278148-13278167 | None:intergenic | 40.0% | |
| ATTACAGTGGGGTGATTTGA+TGG | - | chr7.1:13276910-13276929 | MS.gene018076:intron | 40.0% | |
| ATTGGGCCCCTAATAGAATA+TGG | - | chr7.1:13277511-13277530 | MS.gene018076:intron | 40.0% | |
| ATTGTTCATGGCACTATCAC+AGG | - | chr7.1:13276674-13276693 | MS.gene018076:intron | 40.0% | |
| CAGAACACCAAAGAAAAGCA+AGG | + | chr7.1:13277714-13277733 | None:intergenic | 40.0% | |
| CATATCATGCCATTACAGTG+GGG | - | chr7.1:13276899-13276918 | MS.gene018076:intron | 40.0% | |
| CCAAATGTTGATGTTCTGTC+TGG | - | chr7.1:13277560-13277579 | MS.gene018076:intron | 40.0% | |
| CCAGACAGAACATCAACATT+TGG | + | chr7.1:13277563-13277582 | None:intergenic | 40.0% | |
| CCATATCATGCCATTACAGT+GGG | - | chr7.1:13276898-13276917 | MS.gene018076:intron | 40.0% | |
| CTCACCCCATCACAAATAAA+AGG | + | chr7.1:13278532-13278551 | None:intergenic | 40.0% | |
| CTGAGATGATCCAAAGTAAC+TGG | + | chr7.1:13278671-13278690 | None:intergenic | 40.0% | |
| CTGTCCGATTGTACAGATAA+GGG | + | chr7.1:13277880-13277899 | None:intergenic | 40.0% | |
| GAAAGCTACACTAATGGAAC+AGG | + | chr7.1:13278161-13278180 | None:intergenic | 40.0% | |
| GCTGATGATATTGCAGCATA+TGG | + | chr7.1:13278030-13278049 | None:intergenic | 40.0% | |
| GGGGAAAAATCCAGTTACTT+TGG | - | chr7.1:13278658-13278677 | MS.gene018076:intron | 40.0% | |
| GTAACAAAGCAACAAGTCCA+AGG | + | chr7.1:13278584-13278603 | None:intergenic | 40.0% | |
| TAGTAGACACACCTACACAT+TGG | + | chr7.1:13278277-13278296 | None:intergenic | 40.0% | |
| TATCTGTACAATCGGACAGT+AGG | - | chr7.1:13277881-13277900 | MS.gene018076:intron | 40.0% | |
| TATTCTATTAGGGGCCCAAT+TGG | + | chr7.1:13277511-13277530 | None:intergenic | 40.0% | |
| TCAGAGCCATTATGTCTAGT+TGG | - | chr7.1:13278841-13278860 | MS.gene018076:CDS | 40.0% | |
| TCCATATCATGCCATTACAG+TGG | - | chr7.1:13276897-13276916 | MS.gene018076:intron | 40.0% | |
| TCTCCCCTTATCTGTACAAT+CGG | - | chr7.1:13277873-13277892 | MS.gene018076:intron | 40.0% | |
| TGACAACGGTTGAAGAGAAT+TGG | + | chr7.1:13277928-13277947 | None:intergenic | 40.0% | |
| TGAGAAATCTGCACGAGATT+TGG | + | chr7.1:13276607-13276626 | None:intergenic | 40.0% | |
| TGATGACCACATAATTCTGG+GGG | + | chr7.1:13278236-13278255 | None:intergenic | 40.0% | |
| TGTCCGATTGTACAGATAAG+GGG | + | chr7.1:13277879-13277898 | None:intergenic | 40.0% | |
| TTGAATCCCCCAGAATTATG+TGG | - | chr7.1:13278227-13278246 | MS.gene018076:intron | 40.0% | |
| ! | ACTTGTTGAAGAAGCTCCTA+GGG | - | chr7.1:13278751-13278770 | MS.gene018076:intron | 40.0% |
| ! | CCGTTAAGCTAACTCTAAAG+GGG | - | chr7.1:13278639-13278658 | MS.gene018076:intron | 40.0% |
| ! | CGGAATTCCAAGTAAGTTGA+AGG | + | chr7.1:13277118-13277137 | None:intergenic | 40.0% |
| ! | GCATTAGTTGTACTGATCCT+TGG | - | chr7.1:13278564-13278583 | MS.gene018076:intron | 40.0% |
| ! | TACTTGTTGAAGAAGCTCCT+AGG | - | chr7.1:13278750-13278769 | MS.gene018076:intron | 40.0% |
| !! | CCCCTTTAGAGTTAGCTTAA+CGG | + | chr7.1:13278642-13278661 | None:intergenic | 40.0% |
| !! | GTCTCAATCGAGTTGAAGAA+TGG | - | chr7.1:13276647-13276666 | MS.gene018076:intron | 40.0% |
| !! | TGGACTTGTTGCTTTGTTAC+AGG | - | chr7.1:13278584-13278603 | MS.gene018076:intron | 40.0% |
| !! | TTTCTTTGGTGTTCTGCTCT+GGG | - | chr7.1:13277718-13277737 | MS.gene018076:intron | 40.0% |
| !!! | TTTTCTTTGGTGTTCTGCTC+TGG | - | chr7.1:13277717-13277736 | MS.gene018076:intron | 40.0% |
| AACAACTTCCTGTCTTGCCA+AGG | - | chr7.1:13277196-13277215 | MS.gene018076:intron | 45.0% | |
| AATTGCAGGAGGAAAGCCTT+TGG | - | chr7.1:13278905-13278924 | MS.gene018076:intron | 45.0% | |
| ATGGAGTACACGGTTGCTAT+TGG | - | chr7.1:13276929-13276948 | MS.gene018076:intron | 45.0% | |
| ATTGCAGGAGGAAAGCCTTT+GGG | - | chr7.1:13278906-13278925 | MS.gene018076:intron | 45.0% | |
| CCCACTGTAATGGCATGATA+TGG | + | chr7.1:13276901-13276920 | None:intergenic | 45.0% | |
| GGGATTCAATTGGAGGAGAA+TGG | + | chr7.1:13278216-13278235 | None:intergenic | 45.0% | |
| GGGTGATTTGATGGAGTACA+CGG | - | chr7.1:13276919-13276938 | MS.gene018076:intron | 45.0% | |
| GTTTCAAGGTTCAAGCTGTC+AGG | + | chr7.1:13278728-13278747 | None:intergenic | 45.0% | |
| TATTAGGGGCCCAATTGGAT+TGG | + | chr7.1:13277506-13277525 | None:intergenic | 45.0% | |
| TCGTATACAGTACCAGCAGT+TGG | + | chr7.1:13278791-13278810 | None:intergenic | 45.0% | |
| TGGTGTGTTTCCGGAAAGTT+AGG | + | chr7.1:13278196-13278215 | None:intergenic | 45.0% | |
| TTGGATCATCTCAGTGTGAG+AGG | - | chr7.1:13278677-13278696 | MS.gene018076:intron | 45.0% | |
| ! | ATTCTGGGGGATTCAATTGG+AGG | + | chr7.1:13278223-13278242 | None:intergenic | 45.0% |
| ! | ATTTGTGATGGGGTGAGAAG+TGG | - | chr7.1:13278535-13278554 | MS.gene018076:intron | 45.0% |
| ! | GTTGATGTTCTGTCTGGAGT+TGG | - | chr7.1:13277566-13277585 | MS.gene018076:intron | 45.0% |
| AAGCCTAAGAAGCCAACTGC+TGG | - | chr7.1:13278776-13278795 | MS.gene018076:intron | 50.0% | |
| AGAAGCTACCTAGGGTCTAC+TGG | + | chr7.1:13277645-13277664 | None:intergenic | 50.0% | |
| CAAGGTTCAAGCTGTCAGGA+AGG | + | chr7.1:13278724-13278743 | None:intergenic | 50.0% | |
| CTGTACAATCGGACAGTAGG+AGG | - | chr7.1:13277884-13277903 | MS.gene018076:intron | 50.0% | |
| GGAGGAGAATGGTGTGTTTC+CGG | + | chr7.1:13278205-13278224 | None:intergenic | 50.0% | |
| TGATGGGGTGAGAAGTGGTT+TGG | - | chr7.1:13278540-13278559 | MS.gene018076:intron | 50.0% | |
| TTGCAGGAGGAAAGCCTTTG+GGG | - | chr7.1:13278907-13278926 | MS.gene018076:intron | 50.0% | |
| ! | CAACATATCTAGGGCCCGTT+TGG | - | chr7.1:13277286-13277305 | MS.gene018076:intron | 50.0% |
| ! | CAGATGCACTGACGCTGTAT+AGG | + | chr7.1:13278112-13278131 | None:intergenic | 50.0% |
| ! | GTACCAGCAGTTGGCTTCTT+AGG | + | chr7.1:13278782-13278801 | None:intergenic | 50.0% |
| GCTCTTCACCTTGGCAAGAC+AGG | + | chr7.1:13277207-13277226 | None:intergenic | 55.0% | |
| GGCTTCTTAGGCTTGACCCT+AGG | + | chr7.1:13278770-13278789 | None:intergenic | 55.0% | |
| !! | AAAGCCTTTGGGGCGAGGAC+GGG | - | chr7.1:13278917-13278936 | MS.gene018076:intron | 60.0% |
| !! | GAAAGCCTTTGGGGCGAGGA+CGG | - | chr7.1:13278916-13278935 | MS.gene018076:intron | 60.0% |
| !! | AAGCCTTTGGGGCGAGGACG+GGG | - | chr7.1:13278918-13278937 | MS.gene018076:intron | 65.0% |
| !! | GGAGGAAAGCCTTTGGGGCG+AGG | - | chr7.1:13278912-13278931 | MS.gene018076:intron | 65.0% |
| !! | AGCCTTTGGGGCGAGGACGG+GGG | - | chr7.1:13278919-13278938 | MS.gene018076:intron | 70.0% |
| CGAGGACGCGGTCGTGGACG+CGG | - | chr7.1:13278942-13278961 | MS.gene018076:intron | 75.0% | |
| ! | CGAGGACGGGGGCGAGGACG+CGG | - | chr7.1:13278930-13278949 | MS.gene018076:intron | 80.0% |
| ! | CGCCCCCGTCCTCGCCCCAA+AGG | + | chr7.1:13278924-13278943 | None:intergenic | 80.0% |
| ! | CGCGGTCGTGGACGCGGTCG+TGG | - | chr7.1:13278948-13278967 | MS.gene018076:intron | 80.0% |
| ! | TTGGGGCGAGGACGGGGGCG+AGG | - | chr7.1:13278924-13278943 | MS.gene018076:intron | 80.0% |
| ! | CGGGGGCGAGGACGCGGTCG+TGG | - | chr7.1:13278936-13278955 | MS.gene018076:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 13276519 | 13278977 | 13276519 | ID=MS.gene018076 |
| chr7.1 | mRNA | 13276519 | 13278977 | 13276519 | ID=MS.gene018076.t1;Parent=MS.gene018076 |
| chr7.1 | exon | 13278964 | 13278977 | 13278964 | ID=MS.gene018076.t1.exon1;Parent=MS.gene018076.t1 |
| chr7.1 | CDS | 13278964 | 13278977 | 13278964 | ID=cds.MS.gene018076.t1;Parent=MS.gene018076.t1 |
| chr7.1 | exon | 13278801 | 13278877 | 13278801 | ID=MS.gene018076.t1.exon2;Parent=MS.gene018076.t1 |
| chr7.1 | CDS | 13278801 | 13278877 | 13278801 | ID=cds.MS.gene018076.t1;Parent=MS.gene018076.t1 |
| chr7.1 | exon | 13276699 | 13276890 | 13276699 | ID=MS.gene018076.t1.exon3;Parent=MS.gene018076.t1 |
| chr7.1 | CDS | 13276699 | 13276890 | 13276699 | ID=cds.MS.gene018076.t1;Parent=MS.gene018076.t1 |
| chr7.1 | exon | 13276519 | 13276583 | 13276519 | ID=MS.gene018076.t1.exon4;Parent=MS.gene018076.t1 |
| chr7.1 | CDS | 13276519 | 13276583 | 13276519 | ID=cds.MS.gene018076.t1;Parent=MS.gene018076.t1 |
| Gene Sequence |
| Protein sequence |
