Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28172.t1 | XP_003630137.1 | 100 | 131 | 0 | 0 | 1 | 131 | 1 | 131 | 7.00E-51 | 209.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28172.t1 | Q9LM92 | 93.6 | 94 | 6 | 0 | 1 | 94 | 1 | 94 | 2.6e-46 | 186.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28172.t1 | G7LBD3 | 100.0 | 131 | 0 | 0 | 1 | 131 | 1 | 131 | 5.1e-51 | 209.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28172.t1 | MTR_8g092200 | 100.000 | 131 | 0 | 0 | 1 | 131 | 1 | 131 | 5.23e-95 | 270 |
| MS.gene28172.t1 | MTR_8g058537 | 36.111 | 72 | 45 | 1 | 7 | 77 | 2 | 73 | 1.09e-12 | 61.2 |
| MS.gene28172.t1 | MTR_8g058420 | 36.111 | 72 | 45 | 1 | 7 | 77 | 2 | 73 | 1.09e-12 | 61.2 |
| MS.gene28172.t1 | MTR_8g091620 | 36.111 | 72 | 45 | 1 | 7 | 77 | 2 | 73 | 1.41e-12 | 61.2 |
| MS.gene28172.t1 | MTR_7g108700 | 36.111 | 72 | 45 | 1 | 7 | 77 | 2 | 73 | 1.60e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28172.t1 | AT1G20580 | 84.091 | 132 | 19 | 2 | 1 | 131 | 1 | 131 | 1.09e-71 | 211 |
| MS.gene28172.t1 | AT1G76300 | 77.863 | 131 | 26 | 2 | 1 | 131 | 1 | 128 | 7.54e-69 | 203 |
| MS.gene28172.t1 | AT5G27720 | 36.111 | 72 | 45 | 1 | 7 | 77 | 2 | 73 | 2.49e-12 | 60.1 |
Find 46 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGCCGTGGAGCTCCGCC+TGG | 0.291361 | 4.4:+9545205 | MS.gene28172:CDS |
| ATACTAATGTGACAGGTTTA+TGG | 0.302035 | 4.4:+9544839 | MS.gene28172:intron |
| AAAGAAGATGAGTCGTAGTT+TGG | 0.344374 | 4.4:+9543448 | None:intergenic |
| TGATTGAGTGTGAGGATAAC+TGG | 0.357866 | 4.4:+9543555 | MS.gene28172:CDS |
| GAGTCGTAGTTTGGGAATTC+CGG | 0.364238 | 4.4:+9543457 | MS.gene28172:CDS |
| CCGTGGAGCTCCGCCTGGGA+GGG | 0.368506 | 4.4:+9545210 | MS.gene28172:CDS |
| CGTGGAGCTCCGCCTGGGAG+GGG | 0.398677 | 4.4:+9545211 | MS.gene28172:CDS |
| TAGGCTCAAGCTGCTGGCCG+TGG | 0.400833 | 4.4:+9545193 | MS.gene28172:intron |
| CCCGTGTAGGCTCAAGCTGC+TGG | 0.410767 | 4.4:+9545187 | MS.gene28172:intron |
| AAGAAGATGAGTCGTAGTTT+GGG | 0.420399 | 4.4:+9543449 | None:intergenic |
| GCCGTGGAGCTCCGCCTGGG+AGG | 0.444968 | 4.4:+9545209 | MS.gene28172:CDS |
| CTTGAGCATGTATTTATTCG+AGG | 0.458500 | 4.4:+9544703 | MS.gene28172:CDS |
| GCCTCGTGGAGGAGCTTCAC+CGG | 0.468346 | 4.4:-9543476 | None:intergenic |
| CTGGCCGTGGAGCTCCGCCT+GGG | 0.468800 | 4.4:+9545206 | MS.gene28172:CDS |
| TTATTCGAGGTAGCAAAGTC+AGG | 0.472481 | 4.4:+9544716 | MS.gene28172:CDS |
| GGAGCGTTCTTCAGCATGTC+GGG | 0.484052 | 4.4:-9544867 | None:intergenic |
| GCATCGCTTGGTGTTGGTAG+AGG | 0.487013 | 4.4:+9545015 | MS.gene28172:CDS |
| TGCATCTAAACGCTTAAACA+TGG | 0.488583 | 4.4:-9544889 | None:intergenic |
| AAGCTCCTCCACGAGGCCTC+CGG | 0.500533 | 4.4:+9543482 | MS.gene28172:CDS |
| GCGTTTAGATGCAAGAATCA+AGG | 0.503604 | 4.4:+9544899 | MS.gene28172:CDS |
| AAGGGCAAGGGTGCATCGCT+TGG | 0.512282 | 4.4:+9545003 | MS.gene28172:intron |
| CCCTCCCAGGCGGAGCTCCA+CGG | 0.537318 | 4.4:-9545210 | None:intergenic |
| AAGGGTGCATCGCTTGGTGT+TGG | 0.544000 | 4.4:+9545009 | MS.gene28172:CDS |
| AAGCATCACTTACACTGCTA+AGG | 0.553810 | 4.4:+9543592 | MS.gene28172:CDS |
| CTGAATATCTTGAAGGGCAA+GGG | 0.558094 | 4.4:+9544991 | MS.gene28172:intron |
| AATGATGATCACCTCCTCAC+TGG | 0.558350 | 4.4:-9545241 | None:intergenic |
| ACTGGTGGTACACCCCTCCC+AGG | 0.566465 | 4.4:-9545223 | None:intergenic |
| AGCAGTTGCAATGCGAGCAA+AGG | 0.568696 | 4.4:+9545041 | MS.gene28172:CDS |
| GGGAGCGTTCTTCAGCATGT+CGG | 0.573337 | 4.4:-9544868 | None:intergenic |
| GCATCTAAACGCTTAAACAT+GGG | 0.579546 | 4.4:-9544888 | None:intergenic |
| TGTAAGTGATGCTTTCGAGT+TGG | 0.586493 | 4.4:-9543583 | None:intergenic |
| TTCCACCGTGACGACGTGGC+CGG | 0.588409 | 4.4:-9543501 | None:intergenic |
| GGCCTCCGGCCACGTCGTCA+CGG | 0.591892 | 4.4:+9543496 | MS.gene28172:CDS |
| CGACGTGGCCGGAGGCCTCG+TGG | 0.593417 | 4.4:-9543490 | None:intergenic |
| CACCGTGACGACGTGGCCGG+AGG | 0.605716 | 4.4:-9543498 | None:intergenic |
| AGGCAACATGATTGAGTGTG+AGG | 0.608133 | 4.4:+9543547 | MS.gene28172:CDS |
| GGGGTGTACCACCAGTGAGG+AGG | 0.633056 | 4.4:+9545230 | MS.gene28172:CDS |
| GGAGGGGTGTACCACCAGTG+AGG | 0.654099 | 4.4:+9545227 | MS.gene28172:CDS |
| GATGATCACCTCCTCACTGG+TGG | 0.658723 | 4.4:-9545238 | None:intergenic |
| CGTGGCCGGAGGCCTCGTGG+AGG | 0.675507 | 4.4:-9543487 | None:intergenic |
| GTCACGGTGGAACTAAAGAG+CGG | 0.682814 | 4.4:+9543512 | MS.gene28172:CDS |
| TTAGTTCCACCGTGACGACG+TGG | 0.693866 | 4.4:-9543505 | None:intergenic |
| TCCGGTGAAGCTCCTCCACG+AGG | 0.694574 | 4.4:+9543475 | MS.gene28172:CDS |
| GGTGGTACACCCCTCCCAGG+CGG | 0.697960 | 4.4:-9545220 | None:intergenic |
| AAGAGCGGCGAACTCTACAG+AGG | 0.699233 | 4.4:+9543527 | MS.gene28172:CDS |
| CTCCGGCCACGTCGTCACGG+TGG | 0.728595 | 4.4:+9543499 | MS.gene28172:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACTAGGAATAAAAAAA+AGG | - | chr4.4:9545073-9545092 | None:intergenic | 15.0% |
| !! | TAGATGAAAATAAATAAACT+AGG | - | chr4.4:9545086-9545105 | None:intergenic | 15.0% |
| !!! | TTAATCACTTTTTAATAAGA+AGG | - | chr4.4:9544927-9544946 | None:intergenic | 15.0% |
| !! | AAGAAATTAACAAGTTTCAT+AGG | - | chr4.4:9544565-9544584 | None:intergenic | 20.0% |
| !! | AATAAATTAACAGTAAGACA+TGG | + | chr4.4:9544430-9544449 | MS.gene28172:intron | 20.0% |
| !! | ATATCATTAGAGAAAAAAGT+AGG | + | chr4.4:9543847-9543866 | MS.gene28172:intron | 20.0% |
| !! | GAAAAAAAAAGTTACAAAAC+AGG | - | chr4.4:9544029-9544048 | None:intergenic | 20.0% |
| !! | GTGATTAATTACTCTATATT+TGG | + | chr4.4:9544939-9544958 | MS.gene28172:intron | 20.0% |
| !! | TATCATTAGAGAAAAAAGTA+GGG | + | chr4.4:9543848-9543867 | MS.gene28172:intron | 20.0% |
| !!! | ACAAGTAATTTTGTTAAAGA+GGG | + | chr4.4:9543913-9543932 | MS.gene28172:intron | 20.0% |
| !!! | CATGTCAATTCTTATTTATA+AGG | + | chr4.4:9544252-9544271 | MS.gene28172:intron | 20.0% |
| !!! | TAACGTAATTATTTCAAGTA+AGG | + | chr4.4:9544771-9544790 | MS.gene28172:intron | 20.0% |
| !!! | TACTTTTTTCTCTAATGATA+TGG | - | chr4.4:9543848-9543867 | None:intergenic | 20.0% |
| ! | CAAACCAAATTAGTTAATAC+TGG | - | chr4.4:9543817-9543836 | None:intergenic | 25.0% |
| ! | CTTTCCAGTATTAACTAATT+TGG | + | chr4.4:9543810-9543829 | MS.gene28172:intron | 25.0% |
| ! | TAATCCATTAAGAGAGATTT+GGG | + | chr4.4:9544379-9544398 | MS.gene28172:intron | 25.0% |
| ! | TCTACAATAGTTGCTAATAA+TGG | + | chr4.4:9544647-9544666 | MS.gene28172:intron | 25.0% |
| ! | TTAATCCATTAAGAGAGATT+TGG | + | chr4.4:9544378-9544397 | MS.gene28172:intron | 25.0% |
| !! | AGAAAAAAGTAGGGATTTTT+GGG | + | chr4.4:9543857-9543876 | MS.gene28172:intron | 25.0% |
| !! | AGGGTTTATGTTGTATTTTA+GGG | + | chr4.4:9543754-9543773 | MS.gene28172:intron | 25.0% |
| !! | CAAAATTACTTGTGCTTTTA+TGG | - | chr4.4:9543906-9543925 | None:intergenic | 25.0% |
| !! | CACAAGTAATTTTGTTAAAG+AGG | + | chr4.4:9543912-9543931 | MS.gene28172:intron | 25.0% |
| !! | TAGGGTTTATGTTGTATTTT+AGG | + | chr4.4:9543753-9543772 | MS.gene28172:intron | 25.0% |
| !! | TATAGCTTAAAGCTTTTGAT+AGG | + | chr4.4:9544123-9544142 | MS.gene28172:intron | 25.0% |
| !! | TTTTGTCTGAATATCTTGAA+GGG | + | chr4.4:9544985-9545004 | MS.gene28172:intron | 25.0% |
| !! | TTTTTGTCTGAATATCTTGA+AGG | + | chr4.4:9544984-9545003 | MS.gene28172:intron | 25.0% |
| !!! | AAATCTCTCTTAATGGATTA+AGG | - | chr4.4:9544379-9544398 | None:intergenic | 25.0% |
| !!! | ATCAAAAGCTTTAAGCTATA+TGG | - | chr4.4:9544123-9544142 | None:intergenic | 25.0% |
| !!! | ATTTATTTTCATCTAGCGTT+GGG | + | chr4.4:9545091-9545110 | MS.gene28172:intron | 25.0% |
| !!! | TATTTATTTTCATCTAGCGT+TGG | + | chr4.4:9545090-9545109 | MS.gene28172:intron | 25.0% |
| !!! | TTACTTTTTCCAAGATGAAA+GGG | - | chr4.4:9544209-9544228 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTCCAAGATGAA+AGG | - | chr4.4:9544210-9544229 | None:intergenic | 25.0% |
| !!! | TTTTTTGTAGAATTGAGTTG+TGG | + | chr4.4:9543671-9543690 | MS.gene28172:intron | 25.0% |
| ATACTAATGTGACAGGTTTA+TGG | + | chr4.4:9544839-9544858 | MS.gene28172:intron | 30.0% | |
| TAAATCGACCCATAAAAGTT+AGG | + | chr4.4:9543942-9543961 | MS.gene28172:intron | 30.0% | |
| TAGGGATCTTTGAATACTTA+TGG | + | chr4.4:9543772-9543791 | MS.gene28172:intron | 30.0% | |
| TATCAAACTAAGCAATAAGC+TGG | - | chr4.4:9544086-9544105 | None:intergenic | 30.0% | |
| TGGATTGAATTTGTAGTGTT+TGG | - | chr4.4:9544298-9544317 | None:intergenic | 30.0% | |
| TTACACCACATTTGTAACAA+CGG | - | chr4.4:9545155-9545174 | None:intergenic | 30.0% | |
| ! | AAACAGAGCCTAACTTTTAT+GGG | - | chr4.4:9543953-9543972 | None:intergenic | 30.0% |
| ! | GAGAAAAAAGTAGGGATTTT+TGG | + | chr4.4:9543856-9543875 | MS.gene28172:intron | 30.0% |
| ! | TGTATATCGCATTTTCTGTA+AGG | + | chr4.4:9544800-9544819 | MS.gene28172:intron | 30.0% |
| !! | TAATGGATTAAGGCTTTGTT+TGG | - | chr4.4:9544369-9544388 | None:intergenic | 30.0% |
| !!! | ATACTTATGGTTTTGAACAC+TGG | + | chr4.4:9543785-9543804 | MS.gene28172:intron | 30.0% |
| !!! | GTTACAAAACAGGTCTTTTT+TGG | - | chr4.4:9544019-9544038 | None:intergenic | 30.0% |
| !!! | TACTTTTTCCAAGATGAAAG+GGG | - | chr4.4:9544208-9544227 | None:intergenic | 30.0% |
| ACAACCCAAATCTCTCTTAA+TGG | - | chr4.4:9544386-9544405 | None:intergenic | 35.0% | |
| AGTTTCATAGGAGAGAAAGA+TGG | - | chr4.4:9544553-9544572 | None:intergenic | 35.0% | |
| ATAATGGCTAAATCTTCTGC+AGG | + | chr4.4:9544663-9544682 | MS.gene28172:intron | 35.0% | |
| CATAAAAGTTAGGCTCTGTT+TGG | + | chr4.4:9543952-9543971 | MS.gene28172:intron | 35.0% | |
| CGTTGTGATATTCGCAAATT+TGG | + | chr4.4:9543713-9543732 | MS.gene28172:intron | 35.0% | |
| CTTGAGCATGTATTTATTCG+AGG | + | chr4.4:9544703-9544722 | MS.gene28172:CDS | 35.0% | |
| GAAAAAGTCTTTGGTTGTTG+TGG | + | chr4.4:9544489-9544508 | MS.gene28172:intron | 35.0% | |
| GCATCTAAACGCTTAAACAT+GGG | - | chr4.4:9544891-9544910 | None:intergenic | 35.0% | |
| TGAAGTGATACTAATGTGAC+AGG | + | chr4.4:9544832-9544851 | MS.gene28172:intron | 35.0% | |
| TGCATCTAAACGCTTAAACA+TGG | - | chr4.4:9544892-9544911 | None:intergenic | 35.0% | |
| ! | CAAACAGAGCCTAACTTTTA+TGG | - | chr4.4:9543954-9543973 | None:intergenic | 35.0% |
| !! | AAAAAGTAGGGATTTTTGGG+TGG | + | chr4.4:9543860-9543879 | MS.gene28172:intron | 35.0% |
| !! | TAAGAGAGATTTGGGTTGTA+TGG | + | chr4.4:9544387-9544406 | MS.gene28172:intron | 35.0% |
| !! | TTCAATGACTTGCTAGTTGA+AGG | + | chr4.4:9545124-9545143 | MS.gene28172:intron | 35.0% |
| AAGCATCACTTACACTGCTA+AGG | + | chr4.4:9543592-9543611 | MS.gene28172:CDS | 40.0% | |
| ACCACATTTGTAACAACGGT+AGG | - | chr4.4:9545151-9545170 | None:intergenic | 40.0% | |
| ACCTACCGTTGTTACAAATG+TGG | + | chr4.4:9545147-9545166 | MS.gene28172:intron | 40.0% | |
| ATTCGCAAATTTGGCAGATG+TGG | + | chr4.4:9543722-9543741 | MS.gene28172:intron | 40.0% | |
| CAAAGTTACCCCTTTCATCT+TGG | + | chr4.4:9544197-9544216 | MS.gene28172:intron | 40.0% | |
| CTAGCTTATAGCAGATAAGC+TGG | - | chr4.4:9544321-9544340 | None:intergenic | 40.0% | |
| CTGAATATCTTGAAGGGCAA+GGG | + | chr4.4:9544991-9545010 | MS.gene28172:intron | 40.0% | |
| GCGTTTAGATGCAAGAATCA+AGG | + | chr4.4:9544899-9544918 | MS.gene28172:CDS | 40.0% | |
| TCTGAATATCTTGAAGGGCA+AGG | + | chr4.4:9544990-9545009 | MS.gene28172:intron | 40.0% | |
| TCTTGGTGGGAAAAAGTCTT+TGG | + | chr4.4:9544480-9544499 | MS.gene28172:intron | 40.0% | |
| TGATTGAGTGTGAGGATAAC+TGG | + | chr4.4:9543555-9543574 | MS.gene28172:CDS | 40.0% | |
| TTATTCGAGGTAGCAAAGTC+AGG | + | chr4.4:9544716-9544735 | MS.gene28172:CDS | 40.0% | |
| ! | CTTTTTCCCACCAAGATAGA+CGG | - | chr4.4:9544476-9544495 | None:intergenic | 40.0% |
| ! | TGTAAGTGATGCTTTCGAGT+TGG | - | chr4.4:9543586-9543605 | None:intergenic | 40.0% |
| ! | TTTTTCCCACCAAGATAGAC+GGG | - | chr4.4:9544475-9544494 | None:intergenic | 40.0% |
| !!! | TAGGGATTTTTGGGTGGTTT+GGG | + | chr4.4:9543866-9543885 | MS.gene28172:intron | 40.0% |
| AAATTTGGCAGATGTGGAGC+GGG | + | chr4.4:9543728-9543747 | MS.gene28172:intron | 45.0% | |
| ACCTCAAATGTTTCCCGTGT+AGG | + | chr4.4:9545174-9545193 | MS.gene28172:intron | 45.0% | |
| AGGCAACATGATTGAGTGTG+AGG | + | chr4.4:9543547-9543566 | MS.gene28172:CDS | 45.0% | |
| CAAATTTGGCAGATGTGGAG+CGG | + | chr4.4:9543727-9543746 | MS.gene28172:intron | 45.0% | |
| GAGTCGTAGTTTGGGAATTC+CGG | + | chr4.4:9543457-9543476 | MS.gene28172:CDS | 45.0% | |
| GCTTATAGCAGATAAGCTGG+TGG | - | chr4.4:9544318-9544337 | None:intergenic | 45.0% | |
| GGCTAAATCTTCTGCAGGAT+GGG | + | chr4.4:9544668-9544687 | MS.gene28172:intron | 45.0% | |
| TGGCTAAATCTTCTGCAGGA+TGG | + | chr4.4:9544667-9544686 | MS.gene28172:intron | 45.0% | |
| !!! | GTAGGGATTTTTGGGTGGTT+TGG | + | chr4.4:9543865-9543884 | MS.gene28172:intron | 45.0% |
| AACGATAAACCCAGCCACGA+CGG | - | chr4.4:9543697-9543716 | None:intergenic | 50.0% | |
| AGCAGTTGCAATGCGAGCAA+AGG | + | chr4.4:9545041-9545060 | MS.gene28172:CDS | 50.0% | |
| ATGTAGCCCGTCTATCTTGG+TGG | + | chr4.4:9544466-9544485 | MS.gene28172:intron | 50.0% | |
| CTGATGTAGCCCGTCTATCT+TGG | + | chr4.4:9544463-9544482 | MS.gene28172:intron | 50.0% | |
| GCCTACACGGGAAACATTTG+AGG | - | chr4.4:9545178-9545197 | None:intergenic | 50.0% | |
| GTCACGGTGGAACTAAAGAG+CGG | + | chr4.4:9543512-9543531 | MS.gene28172:CDS | 50.0% | |
| TGTAGCCCGTCTATCTTGGT+GGG | + | chr4.4:9544467-9544486 | MS.gene28172:intron | 50.0% | |
| AAGAGCGGCGAACTCTACAG+AGG | + | chr4.4:9543527-9543546 | MS.gene28172:CDS | 55.0% | |
| GCAGATGTGGAGCGGGATTA+GGG | + | chr4.4:9543735-9543754 | MS.gene28172:intron | 55.0% | |
| TTAGTTCCACCGTGACGACG+TGG | - | chr4.4:9543508-9543527 | None:intergenic | 55.0% | |
| ! | GAATTGAGTTGTGGCCGTCG+TGG | + | chr4.4:9543680-9543699 | MS.gene28172:intron | 55.0% |
| ! | GGAGCGTTCTTCAGCATGTC+GGG | - | chr4.4:9544870-9544889 | None:intergenic | 55.0% |
| !! | AAGGGTGCATCGCTTGGTGT+TGG | + | chr4.4:9545009-9545028 | MS.gene28172:CDS | 55.0% |
| !! | GCATCGCTTGGTGTTGGTAG+AGG | + | chr4.4:9545015-9545034 | MS.gene28172:CDS | 55.0% |
| !! | GGGAGCGTTCTTCAGCATGT+CGG | - | chr4.4:9544871-9544890 | None:intergenic | 55.0% |
| CCAGCAGCTTGAGCCTACAC+GGG | - | chr4.4:9545190-9545209 | None:intergenic | 60.0% | |
| GCCAGCAGCTTGAGCCTACA+CGG | - | chr4.4:9545191-9545210 | None:intergenic | 60.0% | |
| GGCAGATGTGGAGCGGGATT+AGG | + | chr4.4:9543734-9543753 | MS.gene28172:intron | 60.0% | |
| ! | AAGGGCAAGGGTGCATCGCT+TGG | + | chr4.4:9545003-9545022 | MS.gene28172:intron | 60.0% |
| AAGCTCCTCCACGAGGCCTC+CGG | + | chr4.4:9543482-9543501 | MS.gene28172:CDS | 65.0% | |
| ACTGGTGGTACACCCCTCCC+AGG | - | chr4.4:9545226-9545245 | None:intergenic | 65.0% | |
| CCCGTGTAGGCTCAAGCTGC+TGG | + | chr4.4:9545187-9545206 | MS.gene28172:intron | 65.0% | |
| GAGTTGTGGCCGTCGTGGCT+GGG | + | chr4.4:9543685-9543704 | MS.gene28172:intron | 65.0% | |
| GCCTCGTGGAGGAGCTTCAC+CGG | - | chr4.4:9543479-9543498 | None:intergenic | 65.0% | |
| GGGGTGTACCACCAGTGAGG+AGG | + | chr4.4:9545230-9545249 | MS.gene28172:CDS | 65.0% | |
| TAGGCTCAAGCTGCTGGCCG+TGG | + | chr4.4:9545193-9545212 | MS.gene28172:intron | 65.0% | |
| TCCGGTGAAGCTCCTCCACG+AGG | + | chr4.4:9543475-9543494 | MS.gene28172:CDS | 65.0% | |
| TGAGTTGTGGCCGTCGTGGC+TGG | + | chr4.4:9543684-9543703 | MS.gene28172:intron | 65.0% | |
| TTCCACCGTGACGACGTGGC+CGG | - | chr4.4:9543504-9543523 | None:intergenic | 65.0% | |
| ! | GGAGGGGTGTACCACCAGTG+AGG | + | chr4.4:9545227-9545246 | MS.gene28172:CDS | 65.0% |
| GGTGGTACACCCCTCCCAGG+CGG | - | chr4.4:9545223-9545242 | None:intergenic | 70.0% | |
| CACCGTGACGACGTGGCCGG+AGG | - | chr4.4:9543501-9543520 | None:intergenic | 75.0% | |
| CCCTCCCAGGCGGAGCTCCA+CGG | - | chr4.4:9545213-9545232 | None:intergenic | 75.0% | |
| CCGTGGAGCTCCGCCTGGGA+GGG | + | chr4.4:9545210-9545229 | MS.gene28172:CDS | 75.0% | |
| CGTGGAGCTCCGCCTGGGAG+GGG | + | chr4.4:9545211-9545230 | MS.gene28172:CDS | 75.0% | |
| CTCCGGCCACGTCGTCACGG+TGG | + | chr4.4:9543499-9543518 | MS.gene28172:CDS | 75.0% | |
| CTGGCCGTGGAGCTCCGCCT+GGG | + | chr4.4:9545206-9545225 | MS.gene28172:CDS | 75.0% | |
| GGCCTCCGGCCACGTCGTCA+CGG | + | chr4.4:9543496-9543515 | MS.gene28172:CDS | 75.0% | |
| ! | CGACGTGGCCGGAGGCCTCG+TGG | - | chr4.4:9543493-9543512 | None:intergenic | 80.0% |
| ! | CGTGGCCGGAGGCCTCGTGG+AGG | - | chr4.4:9543490-9543509 | None:intergenic | 80.0% |
| ! | GCCGTGGAGCTCCGCCTGGG+AGG | + | chr4.4:9545209-9545228 | MS.gene28172:CDS | 80.0% |
| ! | GCTGGCCGTGGAGCTCCGCC+TGG | + | chr4.4:9545205-9545224 | MS.gene28172:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9543455 | 9545255 | 9543455 | ID=MS.gene28172 |
| chr4.4 | mRNA | 9543455 | 9545255 | 9543455 | ID=MS.gene28172.t1;Parent=MS.gene28172 |
| chr4.4 | exon | 9543455 | 9543613 | 9543455 | ID=MS.gene28172.t1.exon1;Parent=MS.gene28172.t1 |
| chr4.4 | CDS | 9543455 | 9543613 | 9543455 | ID=cds.MS.gene28172.t1;Parent=MS.gene28172.t1 |
| chr4.4 | exon | 9544685 | 9544737 | 9544685 | ID=MS.gene28172.t1.exon2;Parent=MS.gene28172.t1 |
| chr4.4 | CDS | 9544685 | 9544737 | 9544685 | ID=cds.MS.gene28172.t1;Parent=MS.gene28172.t1 |
| chr4.4 | exon | 9544854 | 9544920 | 9544854 | ID=MS.gene28172.t1.exon3;Parent=MS.gene28172.t1 |
| chr4.4 | CDS | 9544854 | 9544920 | 9544854 | ID=cds.MS.gene28172.t1;Parent=MS.gene28172.t1 |
| chr4.4 | exon | 9545006 | 9545062 | 9545006 | ID=MS.gene28172.t1.exon4;Parent=MS.gene28172.t1 |
| chr4.4 | CDS | 9545006 | 9545062 | 9545006 | ID=cds.MS.gene28172.t1;Parent=MS.gene28172.t1 |
| chr4.4 | exon | 9545196 | 9545255 | 9545196 | ID=MS.gene28172.t1.exon5;Parent=MS.gene28172.t1 |
| chr4.4 | CDS | 9545196 | 9545255 | 9545196 | ID=cds.MS.gene28172.t1;Parent=MS.gene28172.t1 |
| Gene Sequence |
| Protein sequence |
