Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019194.t1 | XP_013459524.1 | 93 | 387 | 11 | 1 | 1 | 387 | 1 | 371 | 2.00E-198 | 701.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019194.t1 | Q9SHJ8 | 72.5 | 360 | 98 | 1 | 29 | 387 | 13 | 372 | 3.8e-150 | 532.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019194.t1 | A0A072V5U1 | 93.0 | 387 | 11 | 1 | 1 | 387 | 1 | 371 | 1.4e-198 | 701.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene019194 | MS.gene39279 | PPI |
MS.gene05932 | MS.gene019194 | PPI |
MS.gene019194 | MS.gene022542 | PPI |
MS.gene019194 | MS.gene62781 | PPI |
MS.gene051489 | MS.gene019194 | PPI |
MS.gene019194 | MS.gene00617 | PPI |
MS.gene000261 | MS.gene019194 | PPI |
MS.gene019194 | MS.gene047200 | PPI |
MS.gene019194 | MS.gene015737 | PPI |
MS.gene019194 | MS.gene61573 | PPI |
MS.gene019194 | MS.gene002926 | PPI |
MS.gene019194 | MS.gene049135 | PPI |
MS.gene016092 | MS.gene019194 | PPI |
MS.gene019194 | MS.gene072058 | PPI |
MS.gene019194 | MS.gene04775 | PPI |
MS.gene33113 | MS.gene019194 | PPI |
MS.gene019194 | MS.gene020199 | PPI |
MS.gene01884 | MS.gene019194 | PPI |
MS.gene019194 | MS.gene022768 | PPI |
MS.gene058482 | MS.gene019194 | PPI |
MS.gene00843 | MS.gene019194 | PPI |
MS.gene047966 | MS.gene019194 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019194.t1 | MTR_3g046330 | 93.023 | 387 | 11 | 1 | 1 | 387 | 1 | 371 | 0.0 | 726 |
MS.gene019194.t1 | MTR_8g005990 | 43.258 | 356 | 197 | 2 | 28 | 378 | 37 | 392 | 6.14e-100 | 304 |
MS.gene019194.t1 | MTR_8g010580 | 43.575 | 358 | 198 | 2 | 29 | 382 | 12 | 369 | 3.17e-93 | 286 |
MS.gene019194.t1 | MTR_1g014040 | 41.092 | 348 | 197 | 2 | 38 | 380 | 54 | 398 | 1.58e-92 | 285 |
MS.gene019194.t1 | MTR_8g005990 | 41.854 | 356 | 179 | 3 | 28 | 378 | 37 | 369 | 8.96e-92 | 283 |
MS.gene019194.t1 | MTR_8g010580 | 44.615 | 325 | 178 | 1 | 29 | 351 | 12 | 336 | 1.41e-86 | 268 |
MS.gene019194.t1 | MTR_8g010580 | 43.590 | 312 | 174 | 1 | 28 | 337 | 11 | 322 | 1.14e-79 | 249 |
MS.gene019194.t1 | MTR_8g103840 | 32.778 | 360 | 220 | 11 | 35 | 376 | 54 | 409 | 1.32e-51 | 179 |
MS.gene019194.t1 | MTR_8g103840 | 31.868 | 364 | 222 | 12 | 35 | 376 | 13 | 372 | 2.73e-49 | 172 |
MS.gene019194.t1 | MTR_8g103840 | 31.987 | 297 | 182 | 9 | 97 | 376 | 2 | 295 | 1.34e-37 | 139 |
MS.gene019194.t1 | MTR_8g103840 | 32.509 | 283 | 171 | 9 | 111 | 376 | 32 | 311 | 1.45e-36 | 136 |
MS.gene019194.t1 | MTR_8g103840 | 32.197 | 264 | 159 | 9 | 130 | 376 | 3 | 263 | 1.17e-32 | 124 |
MS.gene019194.t1 | MTR_2027s0010 | 29.282 | 181 | 125 | 2 | 29 | 209 | 2 | 179 | 1.13e-13 | 70.9 |
MS.gene019194.t1 | MTR_3g085700 | 27.979 | 193 | 119 | 4 | 40 | 219 | 22 | 207 | 5.26e-13 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019194.t1 | AT1G06550 | 72.500 | 360 | 98 | 1 | 29 | 387 | 13 | 372 | 0.0 | 554 |
MS.gene019194.t1 | AT5G65940 | 43.539 | 356 | 199 | 1 | 28 | 381 | 10 | 365 | 6.92e-107 | 321 |
MS.gene019194.t1 | AT5G65940 | 43.539 | 356 | 199 | 1 | 28 | 381 | 10 | 365 | 6.92e-107 | 321 |
MS.gene019194.t1 | AT2G30660 | 43.750 | 352 | 180 | 2 | 28 | 369 | 6 | 349 | 4.51e-101 | 306 |
MS.gene019194.t1 | AT2G30650 | 44.034 | 352 | 191 | 2 | 28 | 375 | 6 | 355 | 1.13e-99 | 303 |
MS.gene019194.t1 | AT5G65940 | 45.092 | 326 | 177 | 1 | 28 | 351 | 10 | 335 | 1.29e-99 | 301 |
MS.gene019194.t1 | AT5G65940 | 44.201 | 319 | 176 | 1 | 28 | 344 | 10 | 328 | 1.86e-94 | 288 |
MS.gene019194.t1 | AT4G31810 | 39.896 | 386 | 212 | 4 | 5 | 381 | 27 | 401 | 5.90e-93 | 286 |
MS.gene019194.t1 | AT3G60510 | 42.340 | 359 | 202 | 2 | 27 | 380 | 37 | 395 | 3.17e-91 | 282 |
MS.gene019194.t1 | AT2G30660 | 42.462 | 325 | 169 | 2 | 55 | 369 | 1 | 317 | 1.22e-89 | 276 |
MS.gene019194.t1 | AT2G30650 | 43.614 | 321 | 175 | 2 | 28 | 344 | 6 | 324 | 2.91e-88 | 272 |
MS.gene019194.t1 | AT3G60510 | 39.583 | 384 | 202 | 3 | 27 | 380 | 37 | 420 | 9.30e-86 | 269 |
MS.gene019194.t1 | AT3G60510 | 41.071 | 280 | 163 | 1 | 27 | 304 | 37 | 316 | 2.05e-64 | 210 |
MS.gene019194.t1 | AT4G13360 | 34.146 | 369 | 209 | 14 | 35 | 377 | 57 | 417 | 2.06e-54 | 187 |
MS.gene019194.t1 | AT3G24360 | 31.233 | 365 | 221 | 12 | 35 | 377 | 54 | 410 | 1.02e-49 | 174 |
MS.gene019194.t1 | AT3G24360 | 30.352 | 369 | 223 | 13 | 35 | 377 | 54 | 414 | 2.90e-46 | 165 |
MS.gene019194.t1 | AT3G24360 | 30.508 | 295 | 177 | 10 | 104 | 377 | 2 | 289 | 4.99e-36 | 134 |
MS.gene019194.t1 | AT3G24360 | 30.556 | 288 | 172 | 10 | 111 | 377 | 32 | 312 | 2.13e-35 | 133 |
MS.gene019194.t1 | AT3G24360 | 30.169 | 295 | 178 | 10 | 104 | 377 | 23 | 310 | 2.31e-35 | 133 |
MS.gene019194.t1 | AT3G24360 | 31.538 | 260 | 164 | 9 | 35 | 282 | 54 | 311 | 2.32e-27 | 112 |
MS.gene019194.t1 | AT5G43280 | 27.717 | 184 | 116 | 4 | 40 | 209 | 23 | 203 | 9.80e-12 | 64.7 |
MS.gene019194.t1 | AT5G43280 | 27.717 | 184 | 116 | 4 | 40 | 209 | 23 | 203 | 2.58e-11 | 64.7 |
MS.gene019194.t1 | AT4G16210 | 25.822 | 213 | 140 | 5 | 32 | 235 | 14 | 217 | 7.51e-11 | 62.8 |
Find 80 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCTGAATTCCACACTTTC+TGG | 0.175497 | 3.2:-38479544 | None:intergenic |
AGTCGATTGATGGTGTAATT+TGG | 0.218630 | 3.2:+38480333 | MS.gene019194:CDS |
TTCCAGAAAGTGTGGAATTC+AGG | 0.245129 | 3.2:+38479542 | MS.gene019194:CDS |
TGGCTCTTGATTATATTTAT+TGG | 0.249574 | 3.2:+38480420 | MS.gene019194:CDS |
ATATCTGCTAGCAGAATATT+TGG | 0.264767 | 3.2:+38462671 | MS.gene019194:CDS |
GGTGAATACTTGGCGCTTAC+TGG | 0.275323 | 3.2:+38464721 | MS.gene019194:intron |
TTGCAATTACAAAGACAATA+AGG | 0.292221 | 3.2:-38462141 | None:intergenic |
TGGTTAGGTCCAGCTTTAAA+AGG | 0.296240 | 3.2:+38477882 | MS.gene019194:CDS |
GCTGGTAGGGCTTTCTGTGC+TGG | 0.297545 | 3.2:+38462869 | MS.gene019194:CDS |
GCTACTCCTGAAGCAAGTTT+TGG | 0.303462 | 3.2:+38464323 | MS.gene019194:CDS |
TGATCACTTGCCTGTTCATT+TGG | 0.341505 | 3.2:-38462094 | None:intergenic |
CGCTTGATTAGATTAAATTC+TGG | 0.367422 | 3.2:+38477492 | MS.gene019194:CDS |
TACTATCATTCTCGTTTGCC+AGG | 0.369194 | 3.2:+38464371 | MS.gene019194:CDS |
GTCGATTGATGGTGTAATTT+GGG | 0.384507 | 3.2:+38480334 | MS.gene019194:CDS |
GTTACAACTGAGAATTTCAA+TGG | 0.396852 | 3.2:-38464170 | None:intergenic |
GAGATAGCATTCAACTGCTT+TGG | 0.402603 | 3.2:-38462516 | None:intergenic |
TGAAATCCAAAACTTGCTTC+AGG | 0.406236 | 3.2:-38464329 | None:intergenic |
TATTGGAGTGTTGTGCTTTG+TGG | 0.409128 | 3.2:+38480437 | MS.gene019194:CDS |
AGCAGATCTAATTATCTTGA+AGG | 0.411003 | 3.2:+38462716 | MS.gene019194:CDS |
GAGAAGAGATAGACCATGTA+AGG | 0.415250 | 3.2:+38462475 | MS.gene019194:CDS |
GGAATTAGTTGCGGCTGGAC+TGG | 0.425198 | 3.2:+38464762 | MS.gene019194:CDS |
TGAAGGTCAGAGTCGATTGA+TGG | 0.428682 | 3.2:+38480323 | MS.gene019194:intron |
GGGGATTTGAGAGTATTCTA+TGG | 0.430649 | 3.2:+38462893 | MS.gene019194:CDS |
ATTGGAGTGTTGTGCTTTGT+GGG | 0.432551 | 3.2:+38480438 | MS.gene019194:CDS |
AAAGAAGGAAATGGATGGTT+AGG | 0.436849 | 3.2:+38477867 | MS.gene019194:CDS |
GTAGGGCTTTCTGTGCTGGA+GGG | 0.445553 | 3.2:+38462873 | MS.gene019194:CDS |
GAATCAAGCAAAGAAGGAAA+TGG | 0.445684 | 3.2:+38477858 | MS.gene019194:CDS |
ACTTGCCTGTTCATTTGGTA+TGG | 0.449051 | 3.2:-38462089 | None:intergenic |
CTTACTGGAGCGCGGTTGAA+TGG | 0.451435 | 3.2:+38464736 | MS.gene019194:CDS |
TGCAATTACAAAGACAATAA+GGG | 0.453477 | 3.2:-38462140 | None:intergenic |
ATGTCGCATCCGGATGCAAC+AGG | 0.454818 | 3.2:-38480362 | None:intergenic |
TCTTGTCCATGGAATTTCAA+TGG | 0.455048 | 3.2:+38464124 | MS.gene019194:CDS |
AAAATCTGTACACCACTTCA+AGG | 0.458689 | 3.2:-38463935 | None:intergenic |
AGCTCTAATTCCTTGTCAAA+AGG | 0.459735 | 3.2:-38479514 | None:intergenic |
TGGAGCATTGTCCTTGTCAA+TGG | 0.461725 | 3.2:-38478854 | None:intergenic |
CAAAGTAGATGATGAGAAGT+TGG | 0.466200 | 3.2:+38479477 | MS.gene019194:CDS |
CATTCATGTAGGTGAATACT+TGG | 0.467399 | 3.2:+38464711 | MS.gene019194:intron |
AGGGTGGACTTTACCAGGTC+AGG | 0.467947 | 3.2:-38462540 | None:intergenic |
TGCTTCCATACCAAATGAAC+AGG | 0.473128 | 3.2:+38462084 | MS.gene019194:CDS |
CTTGTCCATGGAATTTCAAT+GGG | 0.476159 | 3.2:+38464125 | MS.gene019194:CDS |
AATAAATATAATCAAGAGCC+AGG | 0.477058 | 3.2:-38480418 | None:intergenic |
CATCAGGTTGCTCTTGTCCA+TGG | 0.477425 | 3.2:+38464113 | MS.gene019194:intron |
TTTGGATTTCATACTGATTG+TGG | 0.478255 | 3.2:+38464341 | MS.gene019194:CDS |
TGGGTTGTGCCTGTTGCATC+CGG | 0.480935 | 3.2:+38480353 | MS.gene019194:CDS |
GGAAAGGAATTAGTTGCGGC+TGG | 0.504298 | 3.2:+38464757 | MS.gene019194:CDS |
GATAGGTGGAATGTCGCATC+CGG | 0.506932 | 3.2:-38480372 | None:intergenic |
GAAGCTGAATCAAGCAAAGA+AGG | 0.513547 | 3.2:+38477852 | MS.gene019194:CDS |
ACTATCTGAATGTCTAAAGA+AGG | 0.514054 | 3.2:+38478634 | MS.gene019194:CDS |
CTCCACCCATTGAAATTCCA+TGG | 0.515087 | 3.2:-38464130 | None:intergenic |
TCTTATAGGTACTAATGTGA+TGG | 0.519860 | 3.2:-38463968 | None:intergenic |
TCAAAGTAATTACCCTTACA+TGG | 0.526473 | 3.2:-38462488 | None:intergenic |
TGTGCATGTCTCAAAACGCC+TGG | 0.526570 | 3.2:+38480400 | MS.gene019194:CDS |
TAGGGCTTTCTGTGCTGGAG+GGG | 0.527824 | 3.2:+38462874 | MS.gene019194:CDS |
GGTAGGGCTTTCTGTGCTGG+AGG | 0.528264 | 3.2:+38462872 | MS.gene019194:CDS |
TATCTTCAGATATCGTAGTT+CGG | 0.534199 | 3.2:-38478682 | None:intergenic |
TCATCTACTTTGTCAAGTGA+TGG | 0.540491 | 3.2:-38479466 | None:intergenic |
GAGACATGCACACGATGGAT+AGG | 0.548257 | 3.2:-38480389 | None:intergenic |
TTACAACTGAGAATTTCAAT+GGG | 0.551626 | 3.2:-38464169 | None:intergenic |
GTCCATGGAATTTCAATGGG+TGG | 0.557121 | 3.2:+38464128 | MS.gene019194:CDS |
GAATGCTATCTCACCTGACC+TGG | 0.565041 | 3.2:+38462527 | MS.gene019194:CDS |
AATTGATGAGTGTTTCTCAA+AGG | 0.565328 | 3.2:+38477707 | MS.gene019194:CDS |
ACTATCATTCTCGTTTGCCA+GGG | 0.586309 | 3.2:+38464372 | MS.gene019194:CDS |
GCTTCAGATTCCAGAAAGTG+TGG | 0.599115 | 3.2:+38479534 | MS.gene019194:CDS |
ATTGAAAATAGCATTAAGAT+CGG | 0.603251 | 3.2:+38477929 | MS.gene019194:CDS |
ATGTGCAGATTCGTGAAGGA+AGG | 0.609080 | 3.2:+38478603 | MS.gene019194:intron |
TGACAAGGACAATGCTCCAA+AGG | 0.609649 | 3.2:+38478858 | MS.gene019194:CDS |
GAATGGAAAGGAATTAGTTG+CGG | 0.611054 | 3.2:+38464753 | MS.gene019194:CDS |
TGGAGCGCGGTTGAATGGAA+AGG | 0.616442 | 3.2:+38464741 | MS.gene019194:CDS |
TCTACTTTGTCAAGTGATGG+AGG | 0.616670 | 3.2:-38479463 | None:intergenic |
CAAGCAAAGAAGGAAATGGA+TGG | 0.625108 | 3.2:+38477862 | MS.gene019194:CDS |
CATGGAATTTCAATGGGTGG+AGG | 0.625143 | 3.2:+38464131 | MS.gene019194:CDS |
GGATATGTGCAGATTCGTGA+AGG | 0.625297 | 3.2:+38478599 | MS.gene019194:intron |
ACATGCACACGATGGATAGG+TGG | 0.637319 | 3.2:-38480386 | None:intergenic |
ACTTGGCGCTTACTGGAGCG+CGG | 0.644935 | 3.2:+38464728 | MS.gene019194:CDS |
GATTTGAGAGTATTCTATGG+TGG | 0.656652 | 3.2:+38462896 | MS.gene019194:CDS |
AGGGGATTCATGCCTTGAAG+TGG | 0.660397 | 3.2:+38463923 | MS.gene019194:intron |
TAGTACCTATAAGAAAACTC+AGG | 0.673028 | 3.2:+38463977 | MS.gene019194:CDS |
AGAAGAGATAGACCATGTAA+GGG | 0.680019 | 3.2:+38462476 | MS.gene019194:CDS |
TAGAGCTCTCACCATTGACA+AGG | 0.688831 | 3.2:+38478843 | MS.gene019194:CDS |
GATATCTGAAGATATGTACG+AGG | 0.784595 | 3.2:+38478691 | MS.gene019194:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 38462073 | 38480484 | 38462073 | ID=MS.gene019194 |
chr3.2 | mRNA | 38462073 | 38480484 | 38462073 | ID=MS.gene019194.t1;Parent=MS.gene019194 |
chr3.2 | exon | 38462073 | 38462153 | 38462073 | ID=MS.gene019194.t1.exon1;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38462073 | 38462153 | 38462073 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38462465 | 38462548 | 38462465 | ID=MS.gene019194.t1.exon2;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38462465 | 38462548 | 38462465 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38462669 | 38462737 | 38462669 | ID=MS.gene019194.t1.exon3;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38462669 | 38462737 | 38462669 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38462866 | 38462929 | 38462866 | ID=MS.gene019194.t1.exon4;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38462866 | 38462929 | 38462866 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38463925 | 38463998 | 38463925 | ID=MS.gene019194.t1.exon5;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38463925 | 38463998 | 38463925 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38464119 | 38464202 | 38464119 | ID=MS.gene019194.t1.exon6;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38464119 | 38464202 | 38464119 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38464317 | 38464401 | 38464317 | ID=MS.gene019194.t1.exon7;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38464317 | 38464401 | 38464317 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38464722 | 38464807 | 38464722 | ID=MS.gene019194.t1.exon8;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38464722 | 38464807 | 38464722 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38477471 | 38477592 | 38477471 | ID=MS.gene019194.t1.exon9;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38477471 | 38477592 | 38477471 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38477698 | 38477758 | 38477698 | ID=MS.gene019194.t1.exon10;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38477698 | 38477758 | 38477698 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38477852 | 38477950 | 38477852 | ID=MS.gene019194.t1.exon11;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38477852 | 38477950 | 38477852 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38478611 | 38478712 | 38478611 | ID=MS.gene019194.t1.exon12;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38478611 | 38478712 | 38478611 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38478838 | 38478879 | 38478838 | ID=MS.gene019194.t1.exon13;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38478838 | 38478879 | 38478838 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38479457 | 38479563 | 38479457 | ID=MS.gene019194.t1.exon14;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38479457 | 38479563 | 38479457 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
chr3.2 | exon | 38480328 | 38480484 | 38480328 | ID=MS.gene019194.t1.exon15;Parent=MS.gene019194.t1 |
chr3.2 | CDS | 38480328 | 38480484 | 38480328 | ID=cds.MS.gene019194.t1;Parent=MS.gene019194.t1 |
Gene Sequence |
Protein sequence |