Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022768.t1 | XP_013444048.1 | 98.2 | 382 | 7 | 0 | 1 | 382 | 1 | 382 | 1.00E-214 | 755.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022768.t1 | Q9LKJ1 | 67.1 | 374 | 120 | 2 | 9 | 382 | 8 | 378 | 6.5e-146 | 518.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022768.t1 | A0A072TX02 | 98.2 | 382 | 7 | 0 | 1 | 382 | 1 | 382 | 7.2e-215 | 755.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene058482 | MS.gene022768 | PPI |
MS.gene022768 | MS.gene015737 | PPI |
MS.gene022768 | MS.gene049135 | PPI |
MS.gene022768 | MS.gene04775 | PPI |
MS.gene05932 | MS.gene022768 | PPI |
MS.gene05880 | MS.gene022768 | PPI |
MS.gene022768 | MS.gene020199 | PPI |
MS.gene051489 | MS.gene022768 | PPI |
MS.gene015787 | MS.gene022768 | PPI |
MS.gene000261 | MS.gene022768 | PPI |
MS.gene022768 | MS.gene05958 | PPI |
MS.gene39279 | MS.gene022768 | PPI |
MS.gene69510 | MS.gene022768 | PPI |
MS.gene022768 | MS.gene39279 | PPI |
MS.gene022768 | MS.gene022542 | PPI |
MS.gene016092 | MS.gene022768 | PPI |
MS.gene022768 | MS.gene62781 | PPI |
MS.gene61573 | MS.gene022768 | PPI |
MS.gene020199 | MS.gene022768 | PPI |
MS.gene33113 | MS.gene022768 | PPI |
MS.gene022768 | MS.gene049084 | PPI |
MS.gene019194 | MS.gene022768 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022768.t1 | MTR_8g010580 | 98.168 | 382 | 7 | 0 | 1 | 382 | 1 | 382 | 0.0 | 781 |
MS.gene022768.t1 | MTR_8g010580 | 98.214 | 336 | 6 | 0 | 1 | 336 | 1 | 336 | 0.0 | 686 |
MS.gene022768.t1 | MTR_8g010580 | 98.137 | 322 | 6 | 0 | 1 | 322 | 1 | 322 | 0.0 | 657 |
MS.gene022768.t1 | MTR_8g005990 | 46.154 | 364 | 195 | 1 | 7 | 370 | 33 | 395 | 8.14e-113 | 335 |
MS.gene022768.t1 | MTR_1g014040 | 46.398 | 347 | 186 | 0 | 9 | 355 | 42 | 388 | 3.78e-110 | 328 |
MS.gene022768.t1 | MTR_8g005990 | 44.231 | 364 | 179 | 2 | 7 | 370 | 33 | 372 | 9.53e-102 | 306 |
MS.gene022768.t1 | MTR_3g046330 | 43.243 | 370 | 205 | 3 | 1 | 369 | 1 | 366 | 3.62e-100 | 302 |
MS.gene022768.t1 | MTR_8g103840 | 36.695 | 357 | 202 | 10 | 22 | 360 | 58 | 408 | 9.38e-61 | 201 |
MS.gene022768.t1 | MTR_8g103840 | 36.034 | 358 | 207 | 10 | 22 | 360 | 17 | 371 | 1.16e-59 | 197 |
MS.gene022768.t1 | MTR_8g103840 | 36.713 | 286 | 161 | 8 | 92 | 360 | 12 | 294 | 8.65e-49 | 167 |
MS.gene022768.t1 | MTR_8g103840 | 36.713 | 286 | 161 | 8 | 92 | 360 | 28 | 310 | 1.17e-48 | 167 |
MS.gene022768.t1 | MTR_8g103840 | 36.604 | 265 | 148 | 8 | 113 | 360 | 1 | 262 | 3.51e-43 | 151 |
MS.gene022768.t1 | MTR_2027s0010 | 28.090 | 178 | 124 | 1 | 12 | 189 | 2 | 175 | 4.46e-15 | 74.7 |
MS.gene022768.t1 | MTR_3g085700 | 31.461 | 178 | 114 | 3 | 17 | 188 | 16 | 191 | 1.95e-14 | 73.2 |
MS.gene022768.t1 | MTR_4g122220 | 29.412 | 187 | 123 | 4 | 12 | 196 | 7 | 186 | 1.13e-13 | 70.9 |
MS.gene022768.t1 | MTR_4g100350 | 25.698 | 179 | 125 | 4 | 23 | 198 | 57 | 230 | 1.69e-12 | 67.8 |
MS.gene022768.t1 | MTR_8g064990 | 28.671 | 143 | 96 | 3 | 23 | 163 | 81 | 219 | 5.54e-11 | 63.5 |
MS.gene022768.t1 | MTR_8g064990 | 28.671 | 143 | 96 | 3 | 23 | 163 | 7 | 145 | 8.83e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022768.t1 | AT5G65940 | 67.112 | 374 | 120 | 2 | 9 | 382 | 8 | 378 | 0.0 | 542 |
MS.gene022768.t1 | AT5G65940 | 67.112 | 374 | 120 | 2 | 9 | 382 | 8 | 378 | 0.0 | 542 |
MS.gene022768.t1 | AT5G65940 | 69.817 | 328 | 99 | 0 | 9 | 336 | 8 | 335 | 8.66e-180 | 503 |
MS.gene022768.t1 | AT2G30660 | 66.763 | 346 | 115 | 0 | 9 | 354 | 4 | 349 | 2.71e-179 | 503 |
MS.gene022768.t1 | AT2G30650 | 64.960 | 371 | 128 | 2 | 11 | 380 | 6 | 375 | 6.02e-179 | 502 |
MS.gene022768.t1 | AT5G65940 | 68.323 | 322 | 102 | 0 | 8 | 329 | 7 | 328 | 1.87e-170 | 479 |
MS.gene022768.t1 | AT2G30660 | 65.615 | 317 | 109 | 0 | 38 | 354 | 1 | 317 | 1.04e-161 | 457 |
MS.gene022768.t1 | AT2G30650 | 64.444 | 315 | 112 | 0 | 8 | 322 | 3 | 317 | 7.80e-150 | 426 |
MS.gene022768.t1 | AT4G31810 | 45.245 | 347 | 190 | 0 | 9 | 355 | 40 | 386 | 4.79e-107 | 321 |
MS.gene022768.t1 | AT3G60510 | 47.383 | 363 | 190 | 1 | 11 | 373 | 38 | 399 | 1.14e-105 | 317 |
MS.gene022768.t1 | AT1G06550 | 43.052 | 367 | 206 | 2 | 7 | 373 | 8 | 371 | 3.54e-100 | 302 |
MS.gene022768.t1 | AT3G60510 | 44.560 | 386 | 188 | 2 | 11 | 371 | 38 | 422 | 5.23e-100 | 303 |
MS.gene022768.t1 | AT3G60510 | 47.653 | 277 | 145 | 0 | 11 | 287 | 38 | 314 | 4.44e-80 | 248 |
MS.gene022768.t1 | AT3G24360 | 36.212 | 359 | 201 | 12 | 22 | 360 | 58 | 408 | 1.30e-61 | 204 |
MS.gene022768.t1 | AT4G13360 | 36.565 | 361 | 201 | 12 | 22 | 360 | 61 | 415 | 1.84e-61 | 204 |
MS.gene022768.t1 | AT3G24360 | 35.833 | 360 | 205 | 12 | 22 | 360 | 58 | 412 | 1.69e-59 | 198 |
MS.gene022768.t1 | AT3G24360 | 36.111 | 288 | 160 | 10 | 92 | 360 | 5 | 287 | 3.85e-48 | 165 |
MS.gene022768.t1 | AT3G24360 | 36.111 | 288 | 160 | 10 | 92 | 360 | 26 | 308 | 3.97e-48 | 166 |
MS.gene022768.t1 | AT3G24360 | 36.111 | 288 | 160 | 10 | 92 | 360 | 28 | 310 | 5.44e-48 | 166 |
MS.gene022768.t1 | AT3G24360 | 38.224 | 259 | 150 | 9 | 22 | 271 | 58 | 315 | 4.29e-42 | 150 |
MS.gene022768.t1 | AT4G16210 | 26.484 | 219 | 148 | 5 | 7 | 219 | 5 | 216 | 1.05e-13 | 71.2 |
MS.gene022768.t1 | AT5G43280 | 27.624 | 181 | 120 | 4 | 18 | 188 | 18 | 197 | 1.95e-11 | 63.5 |
MS.gene022768.t1 | AT5G43280 | 27.624 | 181 | 120 | 4 | 18 | 188 | 18 | 197 | 3.29e-11 | 63.9 |
Find 79 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGCTATTTCAAAGCTTTA+AGG | 0.111501 | 8.1:-85444427 | None:intergenic |
ATCCTTAACAAGCTCCAATT+TGG | 0.248004 | 8.1:+85444537 | None:intergenic |
GAGAGAGCATTCAATTGTTT+TGG | 0.250822 | 8.1:+85451878 | None:intergenic |
TTGCAGGTTTCAATTCTTAA+TGG | 0.257914 | 8.1:-85448517 | MS.gene022768:intron |
GGAGAATATGTTGGTCTTAC+AGG | 0.259688 | 8.1:-85447534 | MS.gene022768:CDS |
AAATAATCCCAAAGCTGTTT+CGG | 0.303784 | 8.1:+85448030 | None:intergenic |
GTCAATAATTGCAGATACTA+TGG | 0.328804 | 8.1:+85445766 | None:intergenic |
TGCTATGCCCGAAACAGCTT+TGG | 0.328892 | 8.1:-85448038 | MS.gene022768:CDS |
AATAATCCCAAAGCTGTTTC+GGG | 0.332057 | 8.1:+85448031 | None:intergenic |
ATTAGACAAGGCAGGCTCTT+AGG | 0.333895 | 8.1:-85444865 | MS.gene022768:CDS |
CCTTGCTATGGTGTCCTTGT+AGG | 0.349526 | 8.1:+85444797 | None:intergenic |
GGCAAGTTGTTGAACCTCTT+GGG | 0.350616 | 8.1:+85444454 | None:intergenic |
TTAGTGGGATCCTTCCAAAT+TGG | 0.352371 | 8.1:-85444551 | MS.gene022768:intron |
ATATAAAATGAATTATTTGA+TGG | 0.359065 | 8.1:-85448654 | MS.gene022768:CDS |
CATGGCATCTCCCGCCAAAC+TGG | 0.359504 | 8.1:-85452096 | MS.gene022768:CDS |
TTTCATATGGTATAGGTGAT+TGG | 0.369959 | 8.1:-85448706 | MS.gene022768:intron |
GGTATAGGTGATTGGAGATT+TGG | 0.392868 | 8.1:-85448698 | MS.gene022768:intron |
TGTTAAATTGATTGTCCTAA+AGG | 0.399260 | 8.1:-85450350 | MS.gene022768:intron |
TGCACAGAAATTATCGTCAT+TGG | 0.403375 | 8.1:-85445825 | MS.gene022768:intron |
TTCCAAATTGGAGCTTGTTA+AGG | 0.403393 | 8.1:-85444539 | MS.gene022768:CDS |
AACCTGATCTTCATCCAGTT+TGG | 0.405023 | 8.1:+85452082 | None:intergenic |
ATCGTCATGGGAGGTGGCGC+TGG | 0.407520 | 8.1:-85448493 | MS.gene022768:CDS |
TGTCGGAGATGCTTTCTTCA+AGG | 0.412605 | 8.1:+85445204 | None:intergenic |
GGTTACATTTATCAGGGAAA+TGG | 0.414501 | 8.1:-85449750 | MS.gene022768:intron |
TGCTGAAGGATGGAAAGATT+TGG | 0.418826 | 8.1:-85444482 | MS.gene022768:CDS |
TAATATGAGGCGCCTACATC+AGG | 0.422559 | 8.1:+85448007 | None:intergenic |
TATTATTTGTCTAGACTAGC+TGG | 0.430192 | 8.1:-85447989 | MS.gene022768:CDS |
AGGACAATCAATTTAACATC+AGG | 0.430392 | 8.1:+85450355 | None:intergenic |
GCTATGCCCGAAACAGCTTT+GGG | 0.440444 | 8.1:-85448037 | MS.gene022768:CDS |
CGCCAAACTGGATGAAGATC+AGG | 0.447087 | 8.1:-85452084 | MS.gene022768:intron |
AGGCAAGTTGTTGAACCTCT+TGG | 0.459879 | 8.1:+85444453 | None:intergenic |
AGAGCAGCCTTCCCTAAAAC+AGG | 0.460836 | 8.1:-85445735 | MS.gene022768:CDS |
CCATAGCAAGGATTTCTTCG+AGG | 0.511511 | 8.1:-85444785 | MS.gene022768:intron |
AGTATGTAGCATACCGATGA+AGG | 0.512916 | 8.1:+85447456 | None:intergenic |
CTTACAGGTGCTAGGTTGGA+TGG | 0.513409 | 8.1:-85447519 | MS.gene022768:CDS |
TGATCTTCATCCAGTTTGGC+GGG | 0.513646 | 8.1:+85452086 | None:intergenic |
TTCTCTAAGCTTGATGCTGA+AGG | 0.514592 | 8.1:-85444496 | MS.gene022768:CDS |
AATGGAATCGTCATGGGAGG+TGG | 0.522285 | 8.1:-85448499 | MS.gene022768:CDS |
AATTCTTAATGGAATCGTCA+TGG | 0.523281 | 8.1:-85448506 | MS.gene022768:CDS |
TTGGGATTATTTCCTGATGT+AGG | 0.525045 | 8.1:-85448019 | MS.gene022768:CDS |
ATAATTGCAGATACTATGGC+TGG | 0.526109 | 8.1:+85445770 | None:intergenic |
CTGATCTTCATCCAGTTTGG+CGG | 0.530938 | 8.1:+85452085 | None:intergenic |
CTATGAGTAAAGCAGATAGT+TGG | 0.533586 | 8.1:-85445246 | MS.gene022768:CDS |
ATTCTTAATGGAATCGTCAT+GGG | 0.537888 | 8.1:-85448505 | MS.gene022768:CDS |
TAGTCTAGACAAATAATATG+AGG | 0.540571 | 8.1:+85447994 | None:intergenic |
CTATACTGATAGATAAAGAC+AGG | 0.546864 | 8.1:-85444671 | MS.gene022768:CDS |
GGCGCTGGTGCTTCTATGCA+TGG | 0.548075 | 8.1:-85448478 | MS.gene022768:CDS |
CTAAGCTTGATGCTGAAGGA+TGG | 0.548086 | 8.1:-85444492 | MS.gene022768:CDS |
AGAAATATTTCACGATGATG+AGG | 0.552047 | 8.1:-85450383 | MS.gene022768:CDS |
CCTCGAAGAAATCCTTGCTA+TGG | 0.552990 | 8.1:+85444785 | None:intergenic |
AACAGGATAGTGTTTATCAC+AGG | 0.554120 | 8.1:-85445718 | MS.gene022768:intron |
TTAACAAGCTCCAATTTGGA+AGG | 0.557519 | 8.1:+85444541 | None:intergenic |
CAATTCTATACTCGTAAACA+AGG | 0.558815 | 8.1:+85444830 | None:intergenic |
TGGTCTTACAGGTGCTAGGT+TGG | 0.559352 | 8.1:-85447523 | MS.gene022768:CDS |
CAAATTGCAGGAGAATATGT+TGG | 0.561540 | 8.1:-85447543 | MS.gene022768:intron |
CAGTTTGGCGGGAGATGCCA+TGG | 0.562279 | 8.1:+85452097 | None:intergenic |
CAAGGCAGGCTCTTAGGTGT+TGG | 0.562954 | 8.1:-85444859 | MS.gene022768:CDS |
TAATCAATAAGTGTTTCTCT+AGG | 0.569952 | 8.1:-85445424 | MS.gene022768:CDS |
GGCAACATACAGTAAGCCTC+AGG | 0.571282 | 8.1:-85448633 | MS.gene022768:intron |
GCAAGTTGTTGAACCTCTTG+GGG | 0.573050 | 8.1:+85444455 | None:intergenic |
ACATTTATCAGGGAAATGGA+AGG | 0.587193 | 8.1:-85449746 | MS.gene022768:intron |
ATGTTGGTCTTACAGGTGCT+AGG | 0.591347 | 8.1:-85447527 | MS.gene022768:CDS |
GAAATATTTCACGATGATGA+GGG | 0.593731 | 8.1:-85450382 | MS.gene022768:CDS |
CATTTATCAGGGAAATGGAA+GGG | 0.594293 | 8.1:-85449745 | MS.gene022768:intron |
ATTGTTTGTCATATCCTACA+AGG | 0.594529 | 8.1:-85444811 | MS.gene022768:CDS |
TAAAGCTTTGAAATAGCATG+TGG | 0.595907 | 8.1:+85444430 | None:intergenic |
GGTGCAGAAATGCTTGCTTG+TGG | 0.601628 | 8.1:-85447498 | MS.gene022768:CDS |
GTATTGTGCAAAGGTTCTGG+TGG | 0.605879 | 8.1:-85451939 | MS.gene022768:intron |
AGCTTTGAAATAGCATGTGG+AGG | 0.613403 | 8.1:+85444433 | None:intergenic |
ATTGGAAGAATCATTATGCA+AGG | 0.625818 | 8.1:-85445807 | MS.gene022768:CDS |
GTATGTAGCATACCGATGAA+GGG | 0.626747 | 8.1:+85447457 | None:intergenic |
GTTGCTAATGACGCAAGAGG+AGG | 0.628706 | 8.1:-85449693 | MS.gene022768:intron |
AGATAAAGACAGGAAACCAA+AGG | 0.644265 | 8.1:-85444661 | MS.gene022768:intron |
GCTGTTGCTAATGACGCAAG+AGG | 0.648895 | 8.1:-85449696 | MS.gene022768:CDS |
CTTAATGGAATCGTCATGGG+AGG | 0.671508 | 8.1:-85448502 | MS.gene022768:CDS |
CCTACAAGGACACCATAGCA+AGG | 0.672173 | 8.1:-85444797 | MS.gene022768:CDS |
GGAAGAATCATTATGCAAGG+TGG | 0.673416 | 8.1:-85445804 | MS.gene022768:CDS |
AAGATTTGGAGTTCCCCAAG+AGG | 0.673816 | 8.1:-85444468 | MS.gene022768:CDS |
GTGTTTCTCTAGGAAAACAG+TGG | 0.677969 | 8.1:-85445414 | MS.gene022768:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 85444429 | 85452117 | 85444429 | ID=MS.gene022768 |
chr8.1 | mRNA | 85444429 | 85452117 | 85444429 | ID=MS.gene022768.t1;Parent=MS.gene022768 |
chr8.1 | exon | 85452085 | 85452117 | 85452085 | ID=MS.gene022768.t1.exon1;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85452085 | 85452117 | 85452085 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85451868 | 85451948 | 85451868 | ID=MS.gene022768.t1.exon2;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85451868 | 85451948 | 85451868 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85450351 | 85450419 | 85450351 | ID=MS.gene022768.t1.exon3;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85450351 | 85450419 | 85450351 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85449694 | 85449757 | 85449694 | ID=MS.gene022768.t1.exon4;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85449694 | 85449757 | 85449694 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85448634 | 85448713 | 85448634 | ID=MS.gene022768.t1.exon5;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85448634 | 85448713 | 85448634 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85448450 | 85448533 | 85448450 | ID=MS.gene022768.t1.exon6;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85448450 | 85448533 | 85448450 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85447981 | 85448065 | 85447981 | ID=MS.gene022768.t1.exon7;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85447981 | 85448065 | 85447981 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85447470 | 85447555 | 85447470 | ID=MS.gene022768.t1.exon8;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85447470 | 85447555 | 85447470 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85445719 | 85445840 | 85445719 | ID=MS.gene022768.t1.exon9;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85445719 | 85445840 | 85445719 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85445394 | 85445454 | 85445394 | ID=MS.gene022768.t1.exon10;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85445394 | 85445454 | 85445394 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85445180 | 85445278 | 85445180 | ID=MS.gene022768.t1.exon11;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85445180 | 85445278 | 85445180 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85444786 | 85444887 | 85444786 | ID=MS.gene022768.t1.exon12;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85444786 | 85444887 | 85444786 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85444662 | 85444703 | 85444662 | ID=MS.gene022768.t1.exon13;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85444662 | 85444703 | 85444662 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
chr8.1 | exon | 85444429 | 85444569 | 85444429 | ID=MS.gene022768.t1.exon14;Parent=MS.gene022768.t1 |
chr8.1 | CDS | 85444429 | 85444569 | 85444429 | ID=cds.MS.gene022768.t1;Parent=MS.gene022768.t1 |
Gene Sequence |
Protein sequence |