AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019402

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019402.t1 MTR_8g033410 89.877 326 32 1 1 325 1 326 0.0 604
MS.gene019402.t1 MTR_8g033400 82.099 324 57 1 2 325 11 333 0.0 545
MS.gene019402.t1 MTR_8g033390 59.502 321 129 1 6 325 3 323 2.92e-140 400
MS.gene019402.t1 MTR_7g075830 50.316 316 132 6 29 324 4 314 1.04e-101 301
MS.gene019402.t1 MTR_4g013090 42.345 307 166 3 22 325 15 313 1.06e-83 255
MS.gene019402.t1 MTR_4g012960 42.434 304 167 2 22 325 15 310 1.51e-83 255
MS.gene019402.t1 MTR_4g013100 40.717 307 171 3 22 325 16 314 3.19e-82 252
MS.gene019402.t1 MTR_2g101840 44.737 304 162 3 23 325 16 314 5.25e-79 243
MS.gene019402.t1 MTR_4g013135 40.391 307 172 3 22 325 15 313 2.56e-68 216
MS.gene019402.t1 MTR_3g005970 25.862 348 208 9 3 320 48 375 3.64e-30 118
MS.gene019402.t1 MTR_1g112510 26.562 256 168 2 85 320 94 349 6.34e-24 101
MS.gene019402.t1 MTR_4g005880 26.336 262 170 7 78 323 152 406 4.45e-19 88.2
MS.gene019402.t1 MTR_1g107480 26.275 255 173 6 78 324 119 366 6.76e-18 84.7
MS.gene019402.t1 MTR_6g007170 24.407 295 186 8 39 318 95 367 3.81e-15 75.9
MS.gene019402.t1 MTR_6g007175 23.592 284 173 9 39 311 64 314 6.07e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019402.t1 AT1G12550 53.517 327 137 5 4 324 3 320 3.55e-113 331
MS.gene019402.t1 AT2G45630 52.454 326 145 6 5 325 18 338 6.95e-112 328
MS.gene019402.t1 AT1G79870 42.345 307 166 3 22 325 15 313 4.84e-79 244
MS.gene019402.t1 AT1G79870 40.132 304 158 3 22 325 15 294 1.15e-68 216
MS.gene019402.t1 AT2G45630 44.586 157 78 5 2 154 15 166 6.28e-33 120
MS.gene019402.t1 AT1G72190 25.148 338 214 9 4 320 47 366 1.33e-31 122
MS.gene019402.t1 AT5G28310 38.860 193 65 4 135 325 92 233 1.08e-29 113
MS.gene019402.t1 AT1G68010 26.953 256 167 2 85 320 94 349 4.59e-23 99.0
MS.gene019402.t1 AT1G68010 27.907 258 165 3 85 321 94 351 1.67e-22 97.1
MS.gene019402.t1 AT1G68010 26.848 257 167 3 85 320 94 350 2.08e-21 94.0
MS.gene019402.t1 AT1G17745 25.379 264 174 7 78 325 146 402 1.58e-19 89.7
MS.gene019402.t1 AT3G19480 28.235 255 168 6 78 324 110 357 6.52e-19 87.8
MS.gene019402.t1 AT5G14780 24.324 296 193 7 39 322 67 343 1.35e-18 85.9
MS.gene019402.t1 AT5G14780 24.324 296 193 7 39 322 79 355 1.61e-18 85.5
MS.gene019402.t1 AT5G14780 24.324 296 193 7 39 322 93 369 2.23e-18 85.5
MS.gene019402.t1 AT4G34200 25.591 254 176 5 78 324 125 372 3.33e-18 85.9
MS.gene019402.t1 AT1G17745 23.776 286 178 7 78 325 146 429 1.50e-16 80.9

Find 97 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGGTATCCGGGGAATT+CGG 0.279363 8.2:-63822185 None:intergenic
TTCGGAGGATGTTGCTGATA+TGG 0.291825 8.2:+63822465 MS.gene019402:CDS
CATTTCCGCCATTCTCTGTA+TGG 0.309952 8.2:+63822300 MS.gene019402:CDS
GTGTCGGCGTCGGGGAATTC+AGG 0.311339 8.2:+63822420 MS.gene019402:CDS
GAGAAGATGGGTTTATGATA+TGG 0.312632 8.2:-63822228 None:intergenic
CCTCGACGTGTGTCGGCGTC+GGG 0.328540 8.2:+63822411 MS.gene019402:CDS
TCCAATGAAAAGAACTCTTT+AGG 0.329921 8.2:-63823936 None:intergenic
GGACCGTGAAAGAATACTTT+TGG 0.335420 8.2:-63822160 None:intergenic
TGGAGGTATCCGGGGAATTC+GGG 0.335490 8.2:-63822184 None:intergenic
AATTCAATCAACTATATAAC+TGG 0.342058 8.2:-63824074 None:intergenic
TGTTGACAATGTGCCTTGTT+TGG 0.349240 8.2:-63823764 None:intergenic
GGTTCAGTCGCCTGCATCTT+GGG 0.351274 8.2:+63822552 MS.gene019402:CDS
TGGAGAGAGGGAAGAGAAGA+TGG 0.355161 8.2:-63822241 None:intergenic
TGATATGGCTGTGGCTTTGT+TGG 0.364353 8.2:+63822480 MS.gene019402:CDS
TGACTGGTGTTTCAGATATC+AGG 0.370285 8.2:+63823552 MS.gene019402:intron
AGGATTGGGTTGGAGGTATC+CGG 0.373715 8.2:-63822194 None:intergenic
TGAGATTGGAGGTGCTGGTT+TGG 0.374130 8.2:+63823887 MS.gene019402:CDS
AGGGAGAAGGTGGAGAATTT+CGG 0.376049 8.2:-63822341 None:intergenic
ATGGAAGTTGTGGGAAGGAT+TGG 0.380138 8.2:-63822209 None:intergenic
AAAGATTGGAATTGTTGGTC+TGG 0.384913 8.2:+63823578 MS.gene019402:CDS
CATACAGAGAATGGCGGAAA+TGG 0.393518 8.2:-63822299 None:intergenic
TGTGGGAAGGATTGGGTTGG+AGG 0.397492 8.2:-63822201 None:intergenic
GGAATTGTTGAAATGTTTGA+TGG 0.401874 8.2:+63823860 MS.gene019402:CDS
AGAGAAGTCATGTTGGCATT+AGG 0.401915 8.2:+63823786 MS.gene019402:CDS
CTTAACTTCAGAGTCACATA+TGG 0.415771 8.2:+63823989 MS.gene019402:CDS
GGAATTCAGGTCGCCAATGC+TGG 0.417890 8.2:+63822433 MS.gene019402:CDS
GAGGTCAATGTGATTAGTTC+CGG 0.424802 8.2:-63822392 None:intergenic
TGGAAGTTGTGGGAAGGATT+GGG 0.426704 8.2:-63822208 None:intergenic
ATTGTTGGTCTGGGAAGAAT+TGG 0.427657 8.2:+63823588 MS.gene019402:CDS
AAGAACTCTTTAGGAACATC+AGG 0.435138 8.2:-63823927 None:intergenic
AGGTGCTCTCATTGATGAAA+AGG 0.435320 8.2:+63823839 MS.gene019402:CDS
CTCCCAAAAGTATTCTTTCA+CGG 0.439453 8.2:+63822157 MS.gene019402:CDS
GGATTGGGTTGGAGGTATCC+GGG 0.451687 8.2:-63822193 None:intergenic
TGGGAGATTCTTTGTTTCAT+CGG 0.451982 8.2:-63822140 None:intergenic
AAGATTGGAATTGTTGGTCT+GGG 0.454839 8.2:+63823579 MS.gene019402:CDS
GGAAGCATTGTGAGGGTTGG+TGG 0.461511 8.2:-63822275 None:intergenic
GAGGGTTGGTGGATATGAAT+TGG 0.461733 8.2:-63822264 None:intergenic
TCGAAGACAGTGGAATAGTA+AGG 0.472470 8.2:-63823693 None:intergenic
ACCTCGACGTGTGTCGGCGT+CGG 0.475926 8.2:+63822410 MS.gene019402:CDS
GGAAAATTTCAGCGGCGGAT+CGG 0.482386 8.2:+63822515 MS.gene019402:CDS
TGTTTGATGGAAGATGAGAT+TGG 0.485864 8.2:+63823873 MS.gene019402:CDS
AGGTTCAGTCGCCTGCATCT+TGG 0.488282 8.2:+63822551 MS.gene019402:CDS
GGAGGAATCATAGTGAATGT+TGG 0.488721 8.2:+63823813 MS.gene019402:CDS
GGTTTATGATATGGAAGTTG+TGG 0.492170 8.2:-63822219 None:intergenic
CACGGTCCACCCGAATTCCC+CGG 0.495030 8.2:+63822175 MS.gene019402:CDS
ATTTCCGCCATTCTCTGTAT+GGG 0.500386 8.2:+63822301 MS.gene019402:CDS
GGAGAGAGGGAAGAGAAGAT+GGG 0.500439 8.2:-63822240 None:intergenic
GCAAAGAGGCTTGAAACATT+CGG 0.503343 8.2:+63823621 MS.gene019402:CDS
GTGGCTTTGTTGGTTGATGT+TGG 0.505017 8.2:+63822490 MS.gene019402:CDS
TTCATCATGACCTCCAGTGC+CGG 0.509827 8.2:+63822373 MS.gene019402:CDS
GAAGATGAGATTGGAGGTGC+TGG 0.516909 8.2:+63823882 MS.gene019402:CDS
CTTTGTTGGTTGATGTTGGT+AGG 0.517180 8.2:+63822494 MS.gene019402:CDS
AATGTGATTAGTTCCGGCAC+TGG 0.522357 8.2:-63822386 None:intergenic
TATGGGTATCTGCCAACTTG+TGG 0.528506 8.2:+63824007 MS.gene019402:CDS
GTCATGTTGGCATTAGGAAA+AGG 0.535996 8.2:+63823792 MS.gene019402:CDS
GTTTATGATATGGAAGTTGT+GGG 0.545502 8.2:-63822218 None:intergenic
GTCATGATGAAACGCAGGCA+AGG 0.550567 8.2:-63822361 None:intergenic
GGAGGAAGCATTGTGAGGGT+TGG 0.551682 8.2:-63822278 None:intergenic
AGTGGAAAATCCCAAGATGC+AGG 0.552755 8.2:-63822562 None:intergenic
AGTTGTGGGAAGGATTGGGT+TGG 0.553461 8.2:-63822204 None:intergenic
GATATGAATTGGTGGAGAGA+GGG 0.554083 8.2:-63822253 None:intergenic
GTATAGACCCATACAGAGAA+TGG 0.566297 8.2:-63822308 None:intergenic
GGATATGAATTGGTGGAGAG+AGG 0.569776 8.2:-63822254 None:intergenic
GGAGAATTTCGGCGTTGAGA+GGG 0.572565 8.2:-63822330 None:intergenic
ACAGAGAATGGCGGAAATGG+AGG 0.573109 8.2:-63822296 None:intergenic
ATCATAGTGAATGTTGGAAG+AGG 0.578453 8.2:+63823819 MS.gene019402:CDS
GTGATTAGTTCCGGCACTGG+AGG 0.582358 8.2:-63822383 None:intergenic
ATGATATGGAAGTTGTGGGA+AGG 0.583022 8.2:-63822214 None:intergenic
TTAACTTCAGAGTCACATAT+GGG 0.586174 8.2:+63823990 MS.gene019402:CDS
TGAAACGCAGGCAAGGGAGA+AGG 0.587990 8.2:-63822354 None:intergenic
AGGTATCCGGGGAATTCGGG+TGG 0.591032 8.2:-63822181 None:intergenic
GGATGTTGCTGATATGGCTG+TGG 0.591447 8.2:+63822471 MS.gene019402:CDS
TGGAGAATTTCGGCGTTGAG+AGG 0.594027 8.2:-63822331 None:intergenic
TCATGATGAAACGCAGGCAA+GGG 0.595481 8.2:-63822360 None:intergenic
ACATTGACCTCGACGTGTGT+CGG 0.597975 8.2:+63822404 MS.gene019402:CDS
GGTTGGTGGATATGAATTGG+TGG 0.599312 8.2:-63822261 None:intergenic
AACGCAGGCAAGGGAGAAGG+TGG 0.605542 8.2:-63822351 None:intergenic
CGAAGACAGTGGAATAGTAA+GGG 0.611177 8.2:-63823692 None:intergenic
GCGATCTAAATGACCAAACA+AGG 0.614620 8.2:+63823751 MS.gene019402:CDS
AAATGGAGGAAGCATTGTGA+GGG 0.624570 8.2:-63822282 None:intergenic
GATTGGGTTGGAGGTATCCG+GGG 0.628352 8.2:-63822192 None:intergenic
TTGCAGACCTTAGAACCAAG+TGG 0.630404 8.2:-63822580 None:intergenic
CTCGACGTGTGTCGGCGTCG+GGG 0.632956 8.2:+63822412 MS.gene019402:CDS
GAAATGGAGGAAGCATTGTG+AGG 0.633991 8.2:-63822283 None:intergenic
TATATAACTGGAGTGATCAG+AGG 0.634789 8.2:-63824062 None:intergenic
TGGTAGGAAAATTTCAGCGG+CGG 0.638621 8.2:+63822510 MS.gene019402:CDS
TGGAGGTCATGATGAAACGC+AGG 0.640622 8.2:-63822366 None:intergenic
TGTTGCAAGCTCGAAGACAG+TGG 0.644246 8.2:-63823703 None:intergenic
TGTCAACAGAGAAGTCATGT+TGG 0.646751 8.2:+63823779 MS.gene019402:CDS
TTGGCTTAGAAGTCGCAAAG+AGG 0.655441 8.2:+63823607 MS.gene019402:CDS
ATGTTGGCATTAGGAAAAGG+AGG 0.660152 8.2:+63823795 MS.gene019402:CDS
TTGATGGAAGATGAGATTGG+AGG 0.666515 8.2:+63823876 MS.gene019402:CDS
TGTTGGTAGGAAAATTTCAG+CGG 0.668856 8.2:+63822507 MS.gene019402:CDS
GCAACAGAGAATGAGTACAT+TGG 0.684288 8.2:-63823730 None:intergenic
GAAGTTAAGACAGCTGCATG+TGG 0.694885 8.2:-63823975 None:intergenic
CCCGACGCCGACACACGTCG+AGG 0.714708 8.2:-63822411 None:intergenic
TAGACCCATACAGAGAATGG+CGG 0.718189 8.2:-63822305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTAAACAAAAAATACA+TGG - chr8.2:63822702-63822721 None:intergenic 15.0%
!! ATTGTAAAATATAGCTAAAA+AGG - chr8.2:63823352-63823371 None:intergenic 15.0%
!!! TTTTACAATTAAGATAGTTA+GGG + chr8.2:63823012-63823031 MS.gene019402:intron 15.0%
!!! TTTTTACAATTAAGATAGTT+AGG + chr8.2:63823011-63823030 MS.gene019402:intron 15.0%
!! GAAAAATAAACATTTCGATA+GGG + chr8.2:63823416-63823435 MS.gene019402:intron 20.0%
!! GTAGTGTTTGATAAAATTAA+CGG + chr8.2:63822868-63822887 MS.gene019402:intron 20.0%
! ACTTGACAAAAAAAAGTTTC+AGG - chr8.2:63823308-63823327 None:intergenic 25.0%
! CTTGACAAAAAAAAGTTTCA+GGG - chr8.2:63823307-63823326 None:intergenic 25.0%
! GGAAAAATAAACATTTCGAT+AGG + chr8.2:63823415-63823434 MS.gene019402:intron 25.0%
!! AAATGGCTATAAGATTTGTT+TGG - chr8.2:63823236-63823255 None:intergenic 25.0%
!! ATGTCTATTTTCATACTTAG+TGG - chr8.2:63823472-63823491 None:intergenic 25.0%
!! ATTGATAACCTAACAAATAG+TGG + chr8.2:63822782-63822801 MS.gene019402:intron 25.0%
!! TTTGATAATAAACATGTGAC+TGG + chr8.2:63823536-63823555 MS.gene019402:intron 25.0%
!!! CAATGCTGGAAATATTTTTT+CGG + chr8.2:63822447-63822466 MS.gene019402:CDS 25.0%
!!! TTTTTTTTGTCAAGTAACCT+AGG + chr8.2:63823313-63823332 MS.gene019402:intron 25.0%
AAGGTGAATTTATAACTCCT+AGG - chr8.2:63823333-63823352 None:intergenic 30.0%
CAGATATCAGGAAAAAAGAT+TGG + chr8.2:63823564-63823583 MS.gene019402:intron 30.0%
CGAAAAAATATTTCCAGCAT+TGG - chr8.2:63822449-63822468 None:intergenic 30.0%
GGAAAAAAGATTGGAATTGT+TGG + chr8.2:63823573-63823592 MS.gene019402:CDS 30.0%
GGAATTGTTGAAATGTTTGA+TGG + chr8.2:63823860-63823879 MS.gene019402:CDS 30.0%
GTTTATGATATGGAAGTTGT+GGG - chr8.2:63822221-63822240 None:intergenic 30.0%
TCACTTATCCACTATTTGTT+AGG - chr8.2:63822793-63822812 None:intergenic 30.0%
TCCAATGAAAAGAACTCTTT+AGG - chr8.2:63823939-63823958 None:intergenic 30.0%
TTAACTTCAGAGTCACATAT+GGG + chr8.2:63823990-63824009 MS.gene019402:CDS 30.0%
! CATACTTAGTGGCATTTTAA+AGG - chr8.2:63823461-63823480 None:intergenic 30.0%
! TCAAATTTTGTTCCACAAGT+TGG - chr8.2:63824022-63824041 None:intergenic 30.0%
! TCCTAAAGAGTTCTTTTCAT+TGG + chr8.2:63823935-63823954 MS.gene019402:CDS 30.0%
!! AGATTTGTTTGGCAATTTTG+AGG - chr8.2:63823225-63823244 None:intergenic 30.0%
!!! AATTTTGAGGTCATAGAAGA+TGG - chr8.2:63823212-63823231 None:intergenic 30.0%
AAAGATTGGAATTGTTGGTC+TGG + chr8.2:63823578-63823597 MS.gene019402:CDS 35.0%
ATCATAGTGAATGTTGGAAG+AGG + chr8.2:63823819-63823838 MS.gene019402:CDS 35.0%
CTTAACTTCAGAGTCACATA+TGG + chr8.2:63823989-63824008 MS.gene019402:CDS 35.0%
GGTTTATGATATGGAAGTTG+TGG - chr8.2:63822222-63822241 None:intergenic 35.0%
TATATAACTGGAGTGATCAG+AGG - chr8.2:63824065-63824084 None:intergenic 35.0%
TGTTTGATGGAAGATGAGAT+TGG + chr8.2:63823873-63823892 MS.gene019402:CDS 35.0%
! AAGAACTCTTTAGGAACATC+AGG - chr8.2:63823930-63823949 None:intergenic 35.0%
! AAGATTGGAATTGTTGGTCT+GGG + chr8.2:63823579-63823598 MS.gene019402:CDS 35.0%
! GACCGTGAAAGAATACTTTT+GGG - chr8.2:63822162-63822181 None:intergenic 35.0%
! GAGAAGATGGGTTTATGATA+TGG - chr8.2:63822231-63822250 None:intergenic 35.0%
! TGGGAGATTCTTTGTTTCAT+CGG - chr8.2:63822143-63822162 None:intergenic 35.0%
! TGTTGGTAGGAAAATTTCAG+CGG + chr8.2:63822507-63822526 MS.gene019402:CDS 35.0%
!! CTCCCAAAAGTATTCTTTCA+CGG + chr8.2:63822157-63822176 MS.gene019402:CDS 35.0%
!! TTAGTGGCATTTTAAAGGCA+AGG - chr8.2:63823456-63823475 None:intergenic 35.0%
!!! AGCTGTTTTTTGTCTAATGG+AGG - chr8.2:63822731-63822750 None:intergenic 35.0%
!!! GACAGCTGTTTTTTGTCTAA+TGG - chr8.2:63822734-63822753 None:intergenic 35.0%
!!! TGCTGGAAATATTTTTTCGG+AGG + chr8.2:63822450-63822469 MS.gene019402:CDS 35.0%
AACACTGCAGCTAGAATGAA+AGG - chr8.2:63823508-63823527 None:intergenic 40.0%
AATCAACTATCAGCTGAGCT+AGG - chr8.2:63822765-63822784 None:intergenic 40.0%
AGAGAAGTCATGTTGGCATT+AGG + chr8.2:63823786-63823805 MS.gene019402:CDS 40.0%
AGGTGCTCTCATTGATGAAA+AGG + chr8.2:63823839-63823858 MS.gene019402:CDS 40.0%
ATGATATGGAAGTTGTGGGA+AGG - chr8.2:63822217-63822236 None:intergenic 40.0%
ATGTTGGCATTAGGAAAAGG+AGG + chr8.2:63823795-63823814 MS.gene019402:CDS 40.0%
ATTTCCGCCATTCTCTGTAT+GGG + chr8.2:63822301-63822320 MS.gene019402:CDS 40.0%
CGAAGACAGTGGAATAGTAA+GGG - chr8.2:63823695-63823714 None:intergenic 40.0%
GATATGAATTGGTGGAGAGA+GGG - chr8.2:63822256-63822275 None:intergenic 40.0%
GCAAAGAGGCTTGAAACATT+CGG + chr8.2:63823621-63823640 MS.gene019402:CDS 40.0%
GCAACAGAGAATGAGTACAT+TGG - chr8.2:63823733-63823752 None:intergenic 40.0%
GCGATCTAAATGACCAAACA+AGG + chr8.2:63823751-63823770 MS.gene019402:CDS 40.0%
GGAGGAATCATAGTGAATGT+TGG + chr8.2:63823813-63823832 MS.gene019402:CDS 40.0%
GTATAGACCCATACAGAGAA+TGG - chr8.2:63822311-63822330 None:intergenic 40.0%
GTCATGTTGGCATTAGGAAA+AGG + chr8.2:63823792-63823811 MS.gene019402:CDS 40.0%
TCGAAGACAGTGGAATAGTA+AGG - chr8.2:63823696-63823715 None:intergenic 40.0%
TGACTGGTGTTTCAGATATC+AGG + chr8.2:63823552-63823571 MS.gene019402:intron 40.0%
TGTCAACAGAGAAGTCATGT+TGG + chr8.2:63823779-63823798 MS.gene019402:CDS 40.0%
TTGATGGAAGATGAGATTGG+AGG + chr8.2:63823876-63823895 MS.gene019402:CDS 40.0%
! ATTGTTGGTCTGGGAAGAAT+TGG + chr8.2:63823588-63823607 MS.gene019402:CDS 40.0%
! CTTTGTTGGTTGATGTTGGT+AGG + chr8.2:63822494-63822513 MS.gene019402:CDS 40.0%
! GAGGTCAATGTGATTAGTTC+CGG - chr8.2:63822395-63822414 None:intergenic 40.0%
! GGACCGTGAAAGAATACTTT+TGG - chr8.2:63822163-63822182 None:intergenic 40.0%
! TGTTGACAATGTGCCTTGTT+TGG - chr8.2:63823767-63823786 None:intergenic 40.0%
!! AAATGGAGGAAGCATTGTGA+GGG - chr8.2:63822285-63822304 None:intergenic 40.0%
!!! GGATTTTCCACTTGGTTCTA+AGG + chr8.2:63822573-63822592 MS.gene019402:CDS 40.0%
ACCAAACTGAGCTAAGCTCA+CGG + chr8.2:63823378-63823397 MS.gene019402:intron 45.0%
AGGGAGAAGGTGGAGAATTT+CGG - chr8.2:63822344-63822363 None:intergenic 45.0%
AGTGGAAAATCCCAAGATGC+AGG - chr8.2:63822565-63822584 None:intergenic 45.0%
ATGGAAGTTGTGGGAAGGAT+TGG - chr8.2:63822212-63822231 None:intergenic 45.0%
CATTTCCGCCATTCTCTGTA+TGG + chr8.2:63822300-63822319 MS.gene019402:CDS 45.0%
GAAGTTAAGACAGCTGCATG+TGG - chr8.2:63823978-63823997 None:intergenic 45.0%
GGATATGAATTGGTGGAGAG+AGG - chr8.2:63822257-63822276 None:intergenic 45.0%
TAGACCCATACAGAGAATGG+CGG - chr8.2:63822308-63822327 None:intergenic 45.0%
TATGGGTATCTGCCAACTTG+TGG + chr8.2:63824007-63824026 MS.gene019402:CDS 45.0%
TCATGATGAAACGCAGGCAA+GGG - chr8.2:63822363-63822382 None:intergenic 45.0%
TGGAAGTTGTGGGAAGGATT+GGG - chr8.2:63822211-63822230 None:intergenic 45.0%
TGGTAGGAAAATTTCAGCGG+CGG + chr8.2:63822510-63822529 MS.gene019402:CDS 45.0%
TTCGGAGGATGTTGCTGATA+TGG + chr8.2:63822465-63822484 MS.gene019402:CDS 45.0%
TTGCAGACCTTAGAACCAAG+TGG - chr8.2:63822583-63822602 None:intergenic 45.0%
TTGGCTTAGAAGTCGCAAAG+AGG + chr8.2:63823607-63823626 MS.gene019402:CDS 45.0%
! AATGTGATTAGTTCCGGCAC+TGG - chr8.2:63822389-63822408 None:intergenic 45.0%
! CATACAGAGAATGGCGGAAA+TGG - chr8.2:63822302-63822321 None:intergenic 45.0%
! GCATCTTGGGATTTTCCACT+TGG + chr8.2:63822565-63822584 MS.gene019402:CDS 45.0%
!! GAAATGGAGGAAGCATTGTG+AGG - chr8.2:63822286-63822305 None:intergenic 45.0%
!! GAGGGTTGGTGGATATGAAT+TGG - chr8.2:63822267-63822286 None:intergenic 45.0%
!! GGATCGGTTTTTGAGAAGAC+AGG + chr8.2:63822531-63822550 MS.gene019402:CDS 45.0%
!! GGTTGGTGGATATGAATTGG+TGG - chr8.2:63822264-63822283 None:intergenic 45.0%
!! GTGGCTTTGTTGGTTGATGT+TGG + chr8.2:63822490-63822509 MS.gene019402:CDS 45.0%
!! TGATATGGCTGTGGCTTTGT+TGG + chr8.2:63822480-63822499 MS.gene019402:CDS 45.0%
!! TTAAAGTATATTATAAAAAA+TGG - chr8.2:63823253-63823272 None:intergenic 5.0%
ACATTGACCTCGACGTGTGT+CGG + chr8.2:63822404-63822423 MS.gene019402:CDS 50.0%
AGCTCACGGGGACTTATTCT+CGG + chr8.2:63823392-63823411 MS.gene019402:intron 50.0%
AGTTGTGGGAAGGATTGGGT+TGG - chr8.2:63822207-63822226 None:intergenic 50.0%
CAAACTGAGCTAAGCTCACG+GGG + chr8.2:63823380-63823399 MS.gene019402:intron 50.0%
CCAAACTGAGCTAAGCTCAC+GGG + chr8.2:63823379-63823398 MS.gene019402:intron 50.0%
GGAAAATTTCAGCGGCGGAT+CGG + chr8.2:63822515-63822534 MS.gene019402:CDS 50.0%
GGAGAGAGGGAAGAGAAGAT+GGG - chr8.2:63822243-63822262 None:intergenic 50.0%
GGATGTTGCTGATATGGCTG+TGG + chr8.2:63822471-63822490 MS.gene019402:CDS 50.0%
GTCATGATGAAACGCAGGCA+AGG - chr8.2:63822364-63822383 None:intergenic 50.0%
TGGAGAGAGGGAAGAGAAGA+TGG - chr8.2:63822244-63822263 None:intergenic 50.0%
TGGAGGTCATGATGAAACGC+AGG - chr8.2:63822369-63822388 None:intergenic 50.0%
TGTTGCAAGCTCGAAGACAG+TGG - chr8.2:63823706-63823725 None:intergenic 50.0%
TTCATCATGACCTCCAGTGC+CGG + chr8.2:63822373-63822392 MS.gene019402:CDS 50.0%
! ACAGAGAATGGCGGAAATGG+AGG - chr8.2:63822299-63822318 None:intergenic 50.0%
! GAAGATGAGATTGGAGGTGC+TGG + chr8.2:63823882-63823901 MS.gene019402:CDS 50.0%
! GGAGAATTTCGGCGTTGAGA+GGG - chr8.2:63822333-63822352 None:intergenic 50.0%
! TGGAGAATTTCGGCGTTGAG+AGG - chr8.2:63822334-63822353 None:intergenic 50.0%
!! AGGATTGGGTTGGAGGTATC+CGG - chr8.2:63822197-63822216 None:intergenic 50.0%
!! TGAGATTGGAGGTGCTGGTT+TGG + chr8.2:63823887-63823906 MS.gene019402:CDS 50.0%
!! TTGGAGGTATCCGGGGAATT+CGG - chr8.2:63822188-63822207 None:intergenic 50.0%
AGGTTCAGTCGCCTGCATCT+TGG + chr8.2:63822551-63822570 MS.gene019402:CDS 55.0%
CCCGTGAGCTTAGCTCAGTT+TGG - chr8.2:63823382-63823401 None:intergenic 55.0%
CTCACGGGGACTTATTCTCG+GGG + chr8.2:63823394-63823413 MS.gene019402:intron 55.0%
GCTCACGGGGACTTATTCTC+GGG + chr8.2:63823393-63823412 MS.gene019402:intron 55.0%
GGAATTCAGGTCGCCAATGC+TGG + chr8.2:63822433-63822452 MS.gene019402:CDS 55.0%
GGTTCAGTCGCCTGCATCTT+GGG + chr8.2:63822552-63822571 MS.gene019402:CDS 55.0%
TGAAACGCAGGCAAGGGAGA+AGG - chr8.2:63822357-63822376 None:intergenic 55.0%
! GTGATTAGTTCCGGCACTGG+AGG - chr8.2:63822386-63822405 None:intergenic 55.0%
!! GATTGGGTTGGAGGTATCCG+GGG - chr8.2:63822195-63822214 None:intergenic 55.0%
!! GGAAGCATTGTGAGGGTTGG+TGG - chr8.2:63822278-63822297 None:intergenic 55.0%
!! GGAGGAAGCATTGTGAGGGT+TGG - chr8.2:63822281-63822300 None:intergenic 55.0%
!! GGATTGGGTTGGAGGTATCC+GGG - chr8.2:63822196-63822215 None:intergenic 55.0%
!! TGGAGGTATCCGGGGAATTC+GGG - chr8.2:63822187-63822206 None:intergenic 55.0%
!! TGTGGGAAGGATTGGGTTGG+AGG - chr8.2:63822204-63822223 None:intergenic 55.0%
AACGCAGGCAAGGGAGAAGG+TGG - chr8.2:63822354-63822373 None:intergenic 60.0%
AGGTATCCGGGGAATTCGGG+TGG - chr8.2:63822184-63822203 None:intergenic 60.0%
TCAGCTGAGCTAGGCTCACG+AGG - chr8.2:63822756-63822775 None:intergenic 60.0%
CACGGTCCACCCGAATTCCC+CGG + chr8.2:63822175-63822194 MS.gene019402:CDS 65.0%
! ACCTCGACGTGTGTCGGCGT+CGG + chr8.2:63822410-63822429 MS.gene019402:CDS 65.0%
! GTGTCGGCGTCGGGGAATTC+AGG + chr8.2:63822420-63822439 MS.gene019402:CDS 65.0%
! CCTCGACGTGTGTCGGCGTC+GGG + chr8.2:63822411-63822430 MS.gene019402:CDS 70.0%
! CTCGACGTGTGTCGGCGTCG+GGG + chr8.2:63822412-63822431 MS.gene019402:CDS 70.0%
CCCGACGCCGACACACGTCG+AGG - chr8.2:63822414-63822433 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 63822136 63824085 63822136 ID=MS.gene019402
chr8.2 mRNA 63822136 63824085 63822136 ID=MS.gene019402.t1;Parent=MS.gene019402
chr8.2 exon 63822136 63822594 63822136 ID=MS.gene019402.t1.exon1;Parent=MS.gene019402.t1
chr8.2 CDS 63822136 63822594 63822136 ID=cds.MS.gene019402.t1;Parent=MS.gene019402.t1
chr8.2 exon 63823567 63824085 63823567 ID=MS.gene019402.t1.exon2;Parent=MS.gene019402.t1
chr8.2 CDS 63823567 63824085 63823567 ID=cds.MS.gene019402.t1;Parent=MS.gene019402.t1
Gene Sequence

>MS.gene019402

ATGGCCGATGAAACAAAGAATCTCCCAAAAGTATTCTTTCACGGTCCACCCGAATTCCCCGGATACCTCCAACCCAATCCTTCCCACAACTTCCATATCATAAACCCATCTTCTCTTCCCTCTCTCCACCAATTCATATCCACCAACCCTCACAATGCTTCCTCCATTTCCGCCATTCTCTGTATGGGTCTATACCCTCTCAACGCCGAAATTCTCCACCTTCTCCCTTGCCTGCGTTTCATCATGACCTCCAGTGCCGGAACTAATCACATTGACCTCGACGTGTGTCGGCGTCGGGGAATTCAGGTCGCCAATGCTGGAAATATTTTTTCGGAGGATGTTGCTGATATGGCTGTGGCTTTGTTGGTTGATGTTGGTAGGAAAATTTCAGCGGCGGATCGGTTTTTGAGAAGACAGGTTCAGTCGCCTGCATCTTGGGATTTTCCACTTGGTTCTAAGGTCTGCAATTTCATTTGTTTTTATATTTATGAAGAAAATATATATTGTATACAATGTTGTTTCACATGATTCTGTTTCATTTTTTCTTTATCAAATTGTTTATTCCATGTATTTTTTGTTTAAATGTATACAACCTCCATTAGACAAAAAACAGCTGTCCTCGTGAGCCTAGCTCAGCTGATAGTTGATTGATAACCTAACAAATAGTGGATAAGTGATAAGTTAATGATAAACTGATAGTTGATAACATATTATAGATAATAAATTTTATTTGTAGTGTTTGATAAAATTAACGGTTCAACTAGCAGAGAAATATATATATTTTTTTAACAAAACTAGCTGACAAATATATGATGCAACATTTTGTCAAAAAAAAAATAAAATGACATAACTATGTTTTTAATGAATATTTAATATTTTTACAATTAAGATAGTTAGGGTAAAATTCTTGACAAAAAAAATAATAGAGCTTGTGAGAAAAAATTGTAAACTTAATTGAAACAACTTATCATAATCACTATAAATTAGTAAAAAAAAAAACACTAAAAGCTTGTGAGAAAAAAAATTGTTACTAAACATGTCTATTTTAGTCAAATGAGTTTATAAACTATAAACCATCTTCTATGACCTCAAAATTGCCAAACAAATCTTATAGCCATTTTTTATAATATACTTTAAGTCATTTTTAAGCTTATAGCTTATATTTATTCCCTGAAACTTTTTTTTGTCAAGTAACCTAGGAGTTATAAATTCACCTTTTTAGCTATATTTTACAATATCTCTACCAAACTGAGCTAAGCTCACGGGGACTTATTCTCGGGGAAAAATAAACATTTCGATAGGGAAAAACATATTTAACCTTGCCTTTAAAATGCCACTAAGTATGAAAATAGACATGTGAATTTAACTTCCTTTCATTCTAGCTGCAGTGTTTGAAGACGTTTGATAATAAACATGTGACTGGTGTTTCAGATATCAGGAAAAAAGATTGGAATTGTTGGTCTGGGAAGAATTGGCTTAGAAGTCGCAAAGAGGCTTGAAACATTCGGTTGCATGATATCATATAACTCTAGAAACAAAAAATCATTAGTTTCGTACCCTTACTATTCCACTGTCTTCGAGCTTGCAACAAACACCAATGTACTCATTCTCTGTTGCGATCTAAATGACCAAACAAGGCACATTGTCAACAGAGAAGTCATGTTGGCATTAGGAAAAGGAGGAATCATAGTGAATGTTGGAAGAGGTGCTCTCATTGATGAAAAGGAATTGTTGAAATGTTTGATGGAAGATGAGATTGGAGGTGCTGGTTTGGATGTGTTCGAGAATGAACCTGATGTTCCTAAAGAGTTCTTTTCATTGGATAATGTTGTTCTTTCACCACATGCAGCTGTCTTAACTTCAGAGTCACATATGGGTATCTGCCAACTTGTGGAACAAAATTTGATAGCATTCTTTTCAAATAAACCTCTGATCACTCCAGTTATATAG
Protein sequence

>MS.gene019402.t1

MADETKNLPKVFFHGPPEFPGYLQPNPSHNFHIINPSSLPSLHQFISTNPHNASSISAILCMGLYPLNAEILHLLPCLRFIMTSSAGTNHIDLDVCRRRGIQVANAGNIFSEDVADMAVALLVDVGRKISAADRFLRRQVQSPASWDFPLGSKISGKKIGIVGLGRIGLEVAKRLETFGCMISYNSRNKKSLVSYPYYSTVFELATNTNVLILCCDLNDQTRHIVNREVMLALGKGGIIVNVGRGALIDEKELLKCLMEDEIGGAGLDVFENEPDVPKEFFSLDNVVLSPHAAVLTSESHMGICQLVEQNLIAFFSNKPLITPVI