Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068259.t1 | XP_003604486.1 | 94.9 | 313 | 13 | 1 | 1 | 313 | 1 | 310 | 1.10E-163 | 585.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068259.t1 | Q65CJ7 | 71.6 | 313 | 89 | 0 | 1 | 313 | 1 | 313 | 9.4e-127 | 454.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068259.t1 | G7JJE7 | 94.9 | 313 | 13 | 1 | 1 | 313 | 1 | 310 | 8.1e-164 | 585.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068259 | MS.gene87846 | PPI |
| MS.gene068259 | MS.gene019405 | PPI |
| MS.gene068259 | MS.gene37508 | PPI |
| MS.gene068259 | MS.gene87848 | PPI |
| MS.gene068259 | MS.gene87842 | PPI |
| MS.gene068259 | MS.gene029300 | PPI |
| MS.gene068259 | MS.gene74946 | PPI |
| MS.gene068259 | MS.gene37515 | PPI |
| MS.gene068259 | MS.gene76198 | PPI |
| MS.gene23633 | MS.gene068259 | PPI |
| MS.gene068259 | MS.gene37513 | PPI |
| MS.gene068259 | MS.gene019402 | PPI |
| MS.gene068259 | MS.gene23624 | PPI |
| MS.gene068259 | MS.gene019406 | PPI |
| MS.gene068259 | MS.gene019404 | PPI |
| MS.gene068259 | MS.gene37512 | PPI |
| MS.gene23623 | MS.gene068259 | PPI |
| MS.gene068259 | MS.gene065032 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068259.t1 | MTR_4g012960 | 94.888 | 313 | 13 | 1 | 1 | 313 | 1 | 310 | 0.0 | 600 |
| MS.gene068259.t1 | MTR_4g013090 | 89.137 | 313 | 34 | 0 | 1 | 313 | 1 | 313 | 0.0 | 572 |
| MS.gene068259.t1 | MTR_4g013100 | 88.217 | 314 | 36 | 1 | 1 | 313 | 1 | 314 | 0.0 | 566 |
| MS.gene068259.t1 | MTR_4g013135 | 84.984 | 313 | 47 | 0 | 1 | 313 | 1 | 313 | 0.0 | 512 |
| MS.gene068259.t1 | MTR_2g101840 | 61.146 | 314 | 121 | 1 | 1 | 313 | 1 | 314 | 1.10e-131 | 377 |
| MS.gene068259.t1 | MTR_8g033390 | 44.681 | 282 | 151 | 2 | 37 | 313 | 42 | 323 | 4.39e-88 | 266 |
| MS.gene068259.t1 | MTR_8g033400 | 40.328 | 305 | 172 | 3 | 16 | 313 | 32 | 333 | 9.08e-82 | 251 |
| MS.gene068259.t1 | MTR_8g033410 | 41.042 | 307 | 170 | 3 | 15 | 313 | 23 | 326 | 1.01e-81 | 250 |
| MS.gene068259.t1 | MTR_7g075830 | 42.366 | 262 | 136 | 4 | 65 | 312 | 54 | 314 | 4.59e-64 | 205 |
| MS.gene068259.t1 | MTR_4g013040 | 84.416 | 77 | 12 | 0 | 65 | 141 | 4 | 80 | 1.06e-38 | 135 |
| MS.gene068259.t1 | MTR_1g112510 | 32.759 | 290 | 171 | 5 | 43 | 308 | 60 | 349 | 8.29e-33 | 125 |
| MS.gene068259.t1 | MTR_1g107480 | 26.667 | 255 | 178 | 4 | 67 | 313 | 118 | 371 | 3.11e-26 | 108 |
| MS.gene068259.t1 | MTR_4g005880 | 27.059 | 255 | 177 | 4 | 67 | 313 | 151 | 404 | 3.51e-26 | 108 |
| MS.gene068259.t1 | MTR_3g005970 | 28.413 | 271 | 171 | 6 | 58 | 308 | 108 | 375 | 8.97e-23 | 97.4 |
| MS.gene068259.t1 | MTR_6g007170 | 27.308 | 260 | 172 | 5 | 59 | 306 | 113 | 367 | 4.77e-21 | 92.8 |
| MS.gene068259.t1 | MTR_7g078990 | 26.106 | 226 | 153 | 4 | 89 | 304 | 99 | 320 | 2.84e-16 | 79.7 |
| MS.gene068259.t1 | MTR_6g007175 | 25.591 | 254 | 163 | 5 | 60 | 306 | 83 | 317 | 7.40e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068259.t1 | AT1G79870 | 70.607 | 313 | 92 | 0 | 1 | 313 | 1 | 313 | 2.26e-156 | 439 |
| MS.gene068259.t1 | AT1G79870 | 66.134 | 313 | 87 | 1 | 1 | 313 | 1 | 294 | 6.20e-140 | 397 |
| MS.gene068259.t1 | AT1G12550 | 52.347 | 277 | 131 | 1 | 37 | 312 | 44 | 320 | 8.06e-100 | 296 |
| MS.gene068259.t1 | AT2G45630 | 41.554 | 296 | 170 | 3 | 21 | 313 | 43 | 338 | 5.04e-83 | 254 |
| MS.gene068259.t1 | AT1G68010 | 31.034 | 290 | 176 | 4 | 43 | 308 | 60 | 349 | 4.80e-31 | 120 |
| MS.gene068259.t1 | AT1G17745 | 27.797 | 295 | 199 | 5 | 32 | 313 | 109 | 402 | 2.29e-30 | 121 |
| MS.gene068259.t1 | AT1G68010 | 31.317 | 281 | 169 | 4 | 43 | 299 | 60 | 340 | 2.48e-30 | 118 |
| MS.gene068259.t1 | AT1G68010 | 30.928 | 291 | 176 | 5 | 43 | 308 | 60 | 350 | 2.35e-29 | 115 |
| MS.gene068259.t1 | AT4G34200 | 27.843 | 255 | 175 | 4 | 67 | 313 | 124 | 377 | 2.24e-28 | 115 |
| MS.gene068259.t1 | AT3G19480 | 28.906 | 256 | 171 | 7 | 67 | 313 | 109 | 362 | 7.45e-26 | 107 |
| MS.gene068259.t1 | AT1G17745 | 26.347 | 334 | 200 | 9 | 25 | 313 | 97 | 429 | 3.33e-25 | 106 |
| MS.gene068259.t1 | AT5G14780 | 27.642 | 246 | 169 | 4 | 73 | 310 | 99 | 343 | 1.02e-23 | 100 |
| MS.gene068259.t1 | AT5G14780 | 27.642 | 246 | 169 | 4 | 73 | 310 | 111 | 355 | 1.14e-23 | 100 |
| MS.gene068259.t1 | AT1G72190 | 29.961 | 257 | 160 | 5 | 54 | 295 | 102 | 353 | 1.14e-23 | 100 |
| MS.gene068259.t1 | AT5G14780 | 27.642 | 246 | 169 | 4 | 73 | 310 | 125 | 369 | 1.25e-23 | 100 |
| MS.gene068259.t1 | AT2G45630 | 33.333 | 123 | 80 | 2 | 21 | 141 | 43 | 165 | 1.30e-19 | 85.1 |
| MS.gene068259.t1 | AT1G01510 | 24.891 | 229 | 156 | 4 | 89 | 304 | 107 | 332 | 1.34e-14 | 74.7 |
Find 90 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGGCTTTCCAAGAAAA+TGG | 0.190671 | 4.4:-87305939 | None:intergenic |
| TTGAGTTCTTGTTCTAAGTA+TGG | 0.245009 | 4.4:-87303496 | None:intergenic |
| GTATTCTTCTTGCAGTTCTC+TGG | 0.254070 | 4.4:+87305445 | MS.gene068259:intron |
| TACCTCGACCAATGTTAATT+AGG | 0.280212 | 4.4:-87305714 | None:intergenic |
| GTTTGATTCTTTCACTTCTT+AGG | 0.280883 | 4.4:+87303785 | MS.gene068259:CDS |
| GCCATGGCTGACCTTGTTCT+TGG | 0.291981 | 4.4:+87305904 | MS.gene068259:CDS |
| GCTACAATCTCTTCCGCATT+TGG | 0.301778 | 4.4:+87303524 | MS.gene068259:CDS |
| GGGAAAACCGTTGGCATTGT+TGG | 0.320417 | 4.4:+87305466 | MS.gene068259:CDS |
| GACAGATGAAGTTGCTGATT+TGG | 0.325124 | 4.4:+87303756 | MS.gene068259:CDS |
| GATGCTAACTCAACAACATT+TGG | 0.344063 | 4.4:-87305595 | None:intergenic |
| TGTGATCGATTTGTTAGAAA+TGG | 0.353095 | 4.4:+87303820 | MS.gene068259:CDS |
| GAAGTTGCTGATTTGGCTAT+TGG | 0.363071 | 4.4:+87303763 | MS.gene068259:CDS |
| GATTTGTTAGAAATGGGAAT+TGG | 0.376741 | 4.4:+87303827 | MS.gene068259:CDS |
| AACCGTTGGCATTGTTGGGC+TGG | 0.378359 | 4.4:+87305471 | MS.gene068259:CDS |
| CTACAATCTCTTCCGCATTT+GGG | 0.381021 | 4.4:+87303525 | MS.gene068259:CDS |
| GCATTGCTTGATGGTCGTTT+AGG | 0.382571 | 4.4:+87305766 | MS.gene068259:CDS |
| CTGGTCTCTGCATTGCTTGA+TGG | 0.387204 | 4.4:+87305757 | MS.gene068259:CDS |
| TCTAGCGAAAGCAGCTCTTC+GGG | 0.388729 | 4.4:-87305829 | None:intergenic |
| CCTTGTTCTTGGAAACTTGG+AGG | 0.390337 | 4.4:+87305915 | MS.gene068259:CDS |
| ATTGTTGGGCTGGGAAGGAT+TGG | 0.391442 | 4.4:+87305481 | MS.gene068259:CDS |
| TTCTAGCGAAAGCAGCTCTT+CGG | 0.399513 | 4.4:-87305830 | None:intergenic |
| ATTAAAACCTTCAGCTCTCT+TGG | 0.401991 | 4.4:-87305515 | None:intergenic |
| GTGATCGATTTGTTAGAAAT+GGG | 0.402436 | 4.4:+87303821 | MS.gene068259:CDS |
| CATTGATGCATTGCCGAAGC+TGG | 0.404615 | 4.4:+87303639 | MS.gene068259:CDS |
| GGCTACAAGGAGAACATCTA+TGG | 0.404822 | 4.4:-87303464 | None:intergenic |
| GTTCTAAGTATGGGATTACT+TGG | 0.405187 | 4.4:-87303486 | None:intergenic |
| ACTTCATCTGTCAAAACATC+TGG | 0.413171 | 4.4:-87303745 | None:intergenic |
| TGACCTTGTTCTTGGAAACT+TGG | 0.428681 | 4.4:+87305912 | MS.gene068259:CDS |
| CTTGAAATGATTTCCAGCTT+CGG | 0.439964 | 4.4:-87303652 | None:intergenic |
| GGAAAACCGTTGGCATTGTT+GGG | 0.441155 | 4.4:+87305467 | MS.gene068259:CDS |
| AAAGCCATTGTTAACTCCCT+TGG | 0.445654 | 4.4:+87305951 | MS.gene068259:CDS |
| TGAGTTCTTGTTCTAAGTAT+GGG | 0.445989 | 4.4:-87303495 | None:intergenic |
| ACCGTTGGCATTGTTGGGCT+GGG | 0.446142 | 4.4:+87305472 | MS.gene068259:CDS |
| CAATGGCTTTCCAAGAAAAT+GGG | 0.449267 | 4.4:-87305938 | None:intergenic |
| AAACCCGTCACATCATCAAC+CGG | 0.461012 | 4.4:+87305659 | MS.gene068259:CDS |
| TATTCTTCTTGCAGTTCTCT+GGG | 0.462588 | 4.4:+87305446 | MS.gene068259:intron |
| CGGCAATGCATCAATGAGTT+CGG | 0.472431 | 4.4:-87303632 | None:intergenic |
| TGCATCAATGAGTTCGGAAT+CGG | 0.477020 | 4.4:-87303626 | None:intergenic |
| ATCAATGCACTTGGTCCAAA+GGG | 0.477901 | 4.4:+87305688 | MS.gene068259:CDS |
| ATGTTAATTAGGAAACCCTT+TGG | 0.478234 | 4.4:-87305703 | None:intergenic |
| GATGGTCGTTTAGGTGGAGC+TGG | 0.485555 | 4.4:+87305775 | MS.gene068259:CDS |
| TTGGCATTGTTGGGCTGGGA+AGG | 0.503389 | 4.4:+87305476 | MS.gene068259:CDS |
| TGATTATAATTTGACCACTA+AGG | 0.504677 | 4.4:+87303858 | MS.gene068259:CDS |
| TTCCTAATTAACATTGGTCG+AGG | 0.510362 | 4.4:+87305712 | MS.gene068259:CDS |
| GATCGATGTTAAGAAATGTA+AGG | 0.512339 | 4.4:+87303696 | MS.gene068259:CDS |
| CATCAATGCACTTGGTCCAA+AGG | 0.515625 | 4.4:+87305687 | MS.gene068259:CDS |
| TTGTTACCTCATTGTGGAAG+CGG | 0.517009 | 4.4:+87305862 | MS.gene068259:CDS |
| CGGGAGGTCATCAATGCACT+TGG | 0.525144 | 4.4:+87305679 | MS.gene068259:CDS |
| TTCTAAGTATGGGATTACTT+GGG | 0.525353 | 4.4:-87303485 | None:intergenic |
| GTTAAGAAATGTAAGGAAAG+AGG | 0.527609 | 4.4:+87303703 | MS.gene068259:CDS |
| GAGTTCGGAATCGGCGCCGG+CGG | 0.528001 | 4.4:-87303617 | None:intergenic |
| AAGGGTTTCCTAATTAACAT+TGG | 0.531591 | 4.4:+87305706 | MS.gene068259:CDS |
| TGTCAAAACATCTGGAGTAA+TGG | 0.532217 | 4.4:-87303737 | None:intergenic |
| TGATTCTTTCACTTCTTAGG+AGG | 0.532746 | 4.4:+87303788 | MS.gene068259:CDS |
| AGCAATGCAGAGACCAGCTC+TGG | 0.534018 | 4.4:-87305751 | None:intergenic |
| AACAAATAGTATGTCGCAGT+TGG | 0.539416 | 4.4:-87305617 | None:intergenic |
| CAGTTCTCTGGGAAAACCGT+TGG | 0.544962 | 4.4:+87305457 | MS.gene068259:intron |
| GATCTGATCAACACCAACAC+TGG | 0.546627 | 4.4:-87303677 | None:intergenic |
| AATGAGTTCGGAATCGGCGC+CGG | 0.553708 | 4.4:-87303620 | None:intergenic |
| GCTTCGATCCGTGCAGTGGT+CGG | 0.555594 | 4.4:+87303586 | MS.gene068259:CDS |
| ATGGGATTACTTGGGCTACA+AGG | 0.559255 | 4.4:-87303477 | None:intergenic |
| GCATGTTGATGAGCCAGAGC+TGG | 0.562230 | 4.4:+87305738 | MS.gene068259:CDS |
| GCAATTGCCAAGAGAGCTGA+AGG | 0.564274 | 4.4:+87305508 | MS.gene068259:CDS |
| GGTTTCCTCTGTAAGAGAGC+AGG | 0.567739 | 4.4:-87305641 | None:intergenic |
| CTCCCGGTTGATGATGTGAC+GGG | 0.570845 | 4.4:-87305662 | None:intergenic |
| ATCATTTCAAGCTCCAGTGT+TGG | 0.571136 | 4.4:+87303664 | MS.gene068259:CDS |
| TGTTGCCTGCTCTCTTACAG+AGG | 0.573190 | 4.4:+87305636 | MS.gene068259:CDS |
| TTGCTTGATGGTCGTTTAGG+TGG | 0.574519 | 4.4:+87305769 | MS.gene068259:CDS |
| CAAGTGCATTGATGACCTCC+CGG | 0.574575 | 4.4:-87305678 | None:intergenic |
| AGCAGCTCTTCGGGAACATG+AGG | 0.575222 | 4.4:-87305820 | None:intergenic |
| CTATTCTAGAACTCAAAAGC+AGG | 0.579821 | 4.4:+87305552 | MS.gene068259:CDS |
| TCCAAGAACAAGGTCAGCCA+TGG | 0.581407 | 4.4:-87305905 | None:intergenic |
| CCTCCAAGTTTCCAAGAACA+AGG | 0.582993 | 4.4:-87305915 | None:intergenic |
| CGGCGCTTCGATCCGTGCAG+TGG | 0.591261 | 4.4:+87303582 | MS.gene068259:CDS |
| TCCCAGCCCAACAATGCCAA+CGG | 0.592381 | 4.4:-87305473 | None:intergenic |
| ACCTCATTGTGGAAGCGGCA+CGG | 0.604339 | 4.4:+87305867 | MS.gene068259:CDS |
| CCTCCCGGTTGATGATGTGA+CGG | 0.605464 | 4.4:-87305663 | None:intergenic |
| GGTAGAAACTCGAACTGCCA+TGG | 0.612477 | 4.4:+87305888 | MS.gene068259:CDS |
| TAAACCAAGGGAGTTAACAA+TGG | 0.621020 | 4.4:-87305955 | None:intergenic |
| TTGATCTTCCGACCACTGCA+CGG | 0.621368 | 4.4:-87303594 | None:intergenic |
| GAGGCAAGTAAATTAAACCA+AGG | 0.621442 | 4.4:-87305968 | None:intergenic |
| AGGCAAGTAAATTAAACCAA+GGG | 0.623571 | 4.4:-87305967 | None:intergenic |
| ACCGTGCCGCTTCCACAATG+AGG | 0.643583 | 4.4:-87305868 | None:intergenic |
| AGAAATGGGAATTGGAAACA+TGG | 0.644264 | 4.4:+87303835 | MS.gene068259:CDS |
| GTGGTCGGAAGATCAACCGC+CGG | 0.646039 | 4.4:+87303601 | MS.gene068259:CDS |
| AACCCGTCACATCATCAACC+GGG | 0.665920 | 4.4:+87305660 | MS.gene068259:CDS |
| TTTGTGGGTAATCCCAAATG+CGG | 0.667779 | 4.4:-87303537 | None:intergenic |
| TCACAGTTCTTAACTCAACA+CGG | 0.674329 | 4.4:+87303562 | MS.gene068259:CDS |
| GTTGTCTTGTTACCTCATTG+TGG | 0.680257 | 4.4:+87305856 | MS.gene068259:CDS |
| CCGTCACATCATCAACCGGG+AGG | 0.750270 | 4.4:+87305663 | MS.gene068259:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATATTATTTTTATATT+TGG | + | chr4.4:87305124-87305143 | MS.gene068259:intron | 0.0% |
| !! | AAAAATAATTAATTTCTTGT+TGG | - | chr4.4:87305417-87305436 | None:intergenic | 10.0% |
| !! | TTGTAATATAAAAAATTTAG+AGG | + | chr4.4:87304200-87304219 | MS.gene068259:intron | 10.0% |
| !! | TTTGTATATAAAAAATTTAG+AGG | + | chr4.4:87304260-87304279 | MS.gene068259:intron | 10.0% |
| !!! | AATTAATTATTTTTTTCTTC+TGG | + | chr4.4:87305423-87305442 | MS.gene068259:intron | 10.0% |
| !! | ATAAGATTTACTTAACGATT+CGG | + | chr4.4:87304887-87304906 | MS.gene068259:intron | 20.0% |
| !! | TTTAAATTTGATCAGCTTAA+TGG | + | chr4.4:87303976-87303995 | MS.gene068259:intron | 20.0% |
| !!! | ATCATTTTTTTCTTCTGAAA+AGG | + | chr4.4:87305302-87305321 | MS.gene068259:intron | 20.0% |
| !!! | CATAAGCTTTCATTTAAAAT+TGG | + | chr4.4:87305237-87305256 | MS.gene068259:intron | 20.0% |
| ! | ATAAAAAATTTAGAGGTCTC+TGG | + | chr4.4:87304267-87304286 | MS.gene068259:intron | 25.0% |
| ! | ATTTCTTGTTGGAAAATGAA+AGG | - | chr4.4:87305406-87305425 | None:intergenic | 25.0% |
| ! | CAAGTGTATATTTGAATTGA+CGG | + | chr4.4:87304052-87304071 | MS.gene068259:intron | 25.0% |
| ! | TGATCTATTATCATGTCATA+AGG | + | chr4.4:87305266-87305285 | MS.gene068259:intron | 25.0% |
| ! | TGATTATAATTTGACCACTA+AGG | + | chr4.4:87303858-87303877 | MS.gene068259:CDS | 25.0% |
| ! | TGTATGAACAAGTACATATA+AGG | - | chr4.4:87304468-87304487 | None:intergenic | 25.0% |
| ! | TTGAGATTCTAATTGTGAAT+CGG | - | chr4.4:87304925-87304944 | None:intergenic | 25.0% |
| ! | TTTCTTGTTGGAAAATGAAA+GGG | - | chr4.4:87305405-87305424 | None:intergenic | 25.0% |
| !! | TTAAGAACTGTGATTTTTGT+GGG | - | chr4.4:87303555-87303574 | None:intergenic | 25.0% |
| !!! | AGTATCATGTATTTTGTTGT+AGG | + | chr4.4:87304555-87304574 | MS.gene068259:intron | 25.0% |
| !!! | ATATCAAGTTTTAGAGTGTT+AGG | + | chr4.4:87304340-87304359 | MS.gene068259:intron | 25.0% |
| !!! | TATCAAGTTTTAGAGTGTTA+GGG | + | chr4.4:87304341-87304360 | MS.gene068259:intron | 25.0% |
| AAGGGTTTCCTAATTAACAT+TGG | + | chr4.4:87305706-87305725 | MS.gene068259:CDS | 30.0% | |
| AGTGGAATTGTATACAAACT+CGG | + | chr4.4:87304438-87304457 | MS.gene068259:intron | 30.0% | |
| ATAAAAAATTTAGAGGCCTC+TGG | + | chr4.4:87304207-87304226 | MS.gene068259:intron | 30.0% | |
| ATCTTGAGTTTATACTCAAG+TGG | + | chr4.4:87304501-87304520 | MS.gene068259:intron | 30.0% | |
| ATGAGTTAACCTTTCTACAT+AGG | + | chr4.4:87304408-87304427 | MS.gene068259:intron | 30.0% | |
| ATGTTAATTAGGAAACCCTT+TGG | - | chr4.4:87305706-87305725 | None:intergenic | 30.0% | |
| CAATAGATACTTGGTTAACA+GGG | - | chr4.4:87303890-87303909 | None:intergenic | 30.0% | |
| CTTTGATAAAAAGGCAACAT+CGG | + | chr4.4:87304528-87304547 | MS.gene068259:intron | 30.0% | |
| GAATCTCAATTCGATAATCT+TGG | + | chr4.4:87304936-87304955 | MS.gene068259:intron | 30.0% | |
| GACAGAAGCAATTAAATAGT+TGG | - | chr4.4:87305209-87305228 | None:intergenic | 30.0% | |
| GATCGATGTTAAGAAATGTA+AGG | + | chr4.4:87303696-87303715 | MS.gene068259:CDS | 30.0% | |
| GTTAAGAAATGTAAGGAAAG+AGG | + | chr4.4:87303703-87303722 | MS.gene068259:CDS | 30.0% | |
| GTTTGATTCTTTCACTTCTT+AGG | + | chr4.4:87303785-87303804 | MS.gene068259:CDS | 30.0% | |
| TCACAAAAGCAATAGATACT+TGG | - | chr4.4:87303899-87303918 | None:intergenic | 30.0% | |
| TCTTGAGTTTATACTCAAGT+GGG | + | chr4.4:87304502-87304521 | MS.gene068259:intron | 30.0% | |
| TTCTAAGTATGGGATTACTT+GGG | - | chr4.4:87303488-87303507 | None:intergenic | 30.0% | |
| TTCTACATAGGAAAAATGAG+TGG | + | chr4.4:87304420-87304439 | MS.gene068259:intron | 30.0% | |
| ! | GTTAAGAACTGTGATTTTTG+TGG | - | chr4.4:87303556-87303575 | None:intergenic | 30.0% |
| ! | TACTTAACGATTCGGAAAAT+TGG | + | chr4.4:87304895-87304914 | MS.gene068259:intron | 30.0% |
| ! | TGAACAATAGATCAGGTTTT+TGG | - | chr4.4:87304976-87304995 | None:intergenic | 30.0% |
| ! | TGAGTTCTTGTTCTAAGTAT+GGG | - | chr4.4:87303498-87303517 | None:intergenic | 30.0% |
| ! | TTGAGTTCTTGTTCTAAGTA+TGG | - | chr4.4:87303499-87303518 | None:intergenic | 30.0% |
| !! | CTCATTTTTCCTATGTAGAA+AGG | - | chr4.4:87304420-87304439 | None:intergenic | 30.0% |
| !! | GATTTGTTAGAAATGGGAAT+TGG | + | chr4.4:87303827-87303846 | MS.gene068259:CDS | 30.0% |
| !! | GTGATCGATTTGTTAGAAAT+GGG | + | chr4.4:87303821-87303840 | MS.gene068259:CDS | 30.0% |
| !! | TGTGATCGATTTGTTAGAAA+TGG | + | chr4.4:87303820-87303839 | MS.gene068259:CDS | 30.0% |
| !!! | CTTTTGAGTTCTAGAATAGT+AGG | - | chr4.4:87305551-87305570 | None:intergenic | 30.0% |
| AACAAATAGTATGTCGCAGT+TGG | - | chr4.4:87305620-87305639 | None:intergenic | 35.0% | |
| ACAATGGCTTTCCAAGAAAA+TGG | - | chr4.4:87305942-87305961 | None:intergenic | 35.0% | |
| ACAGTGAGATGATGAAATCA+AGG | - | chr4.4:87304150-87304169 | None:intergenic | 35.0% | |
| ACTTCATCTGTCAAAACATC+TGG | - | chr4.4:87303748-87303767 | None:intergenic | 35.0% | |
| AGAAATGGGAATTGGAAACA+TGG | + | chr4.4:87303835-87303854 | MS.gene068259:CDS | 35.0% | |
| AGTGGGTGACTTTGATAAAA+AGG | + | chr4.4:87304519-87304538 | MS.gene068259:intron | 35.0% | |
| ATTAAAACCTTCAGCTCTCT+TGG | - | chr4.4:87305518-87305537 | None:intergenic | 35.0% | |
| ATTAAGATTCACATGCTGAG+AGG | - | chr4.4:87304743-87304762 | None:intergenic | 35.0% | |
| CAATGGCTTTCCAAGAAAAT+GGG | - | chr4.4:87305941-87305960 | None:intergenic | 35.0% | |
| CTTGAAATGATTTCCAGCTT+CGG | - | chr4.4:87303655-87303674 | None:intergenic | 35.0% | |
| GATGCTAACTCAACAACATT+TGG | - | chr4.4:87305598-87305617 | None:intergenic | 35.0% | |
| GCAATAGATACTTGGTTAAC+AGG | - | chr4.4:87303891-87303910 | None:intergenic | 35.0% | |
| GTCATACTGCTCATCAAAAT+TGG | + | chr4.4:87305346-87305365 | MS.gene068259:intron | 35.0% | |
| TAAACCAAGGGAGTTAACAA+TGG | - | chr4.4:87305958-87305977 | None:intergenic | 35.0% | |
| TACCTCGACCAATGTTAATT+AGG | - | chr4.4:87305717-87305736 | None:intergenic | 35.0% | |
| TAGATAACTATGTCGAAGAG+TGG | - | chr4.4:87304378-87304397 | None:intergenic | 35.0% | |
| TATTCTTCTTGCAGTTCTCT+GGG | + | chr4.4:87305446-87305465 | MS.gene068259:intron | 35.0% | |
| TCACAGTTCTTAACTCAACA+CGG | + | chr4.4:87303562-87303581 | MS.gene068259:CDS | 35.0% | |
| TCGTAAGATACTGATGACAT+TGG | - | chr4.4:87304644-87304663 | None:intergenic | 35.0% | |
| TGATTCTTTCACTTCTTAGG+AGG | + | chr4.4:87303788-87303807 | MS.gene068259:CDS | 35.0% | |
| TTCCTAATTAACATTGGTCG+AGG | + | chr4.4:87305712-87305731 | MS.gene068259:CDS | 35.0% | |
| TTGCTGAATCTCATGAAGTT+GGG | + | chr4.4:87304768-87304787 | MS.gene068259:intron | 35.0% | |
| TTTGCTGAATCTCATGAAGT+TGG | + | chr4.4:87304767-87304786 | MS.gene068259:intron | 35.0% | |
| ! | ACAAAGACAGCTTCATTTTG+CGG | - | chr4.4:87304610-87304629 | None:intergenic | 35.0% |
| ! | GTTCTAAGTATGGGATTACT+TGG | - | chr4.4:87303489-87303508 | None:intergenic | 35.0% |
| ! | TAACAGGGTTTTTACCTTAG+TGG | - | chr4.4:87303875-87303894 | None:intergenic | 35.0% |
| ! | TGTCAAAACATCTGGAGTAA+TGG | - | chr4.4:87303740-87303759 | None:intergenic | 35.0% |
| !! | ACAATAGATCAGGTTTTTGG+TGG | - | chr4.4:87304973-87304992 | None:intergenic | 35.0% |
| !! | CTATTCTAGAACTCAAAAGC+AGG | + | chr4.4:87305552-87305571 | MS.gene068259:CDS | 35.0% |
| AAAGCCATTGTTAACTCCCT+TGG | + | chr4.4:87305951-87305970 | MS.gene068259:CDS | 40.0% | |
| AAAGGGGTGAACAATAGATC+AGG | - | chr4.4:87304983-87305002 | None:intergenic | 40.0% | |
| AAGCATATACTGGAGGTCAT+TGG | - | chr4.4:87305017-87305036 | None:intergenic | 40.0% | |
| AGACAGTAAGCATATACTGG+AGG | - | chr4.4:87305024-87305043 | None:intergenic | 40.0% | |
| ATCAATGCACTTGGTCCAAA+GGG | + | chr4.4:87305688-87305707 | MS.gene068259:CDS | 40.0% | |
| ATCATTTCAAGCTCCAGTGT+TGG | + | chr4.4:87303664-87303683 | MS.gene068259:CDS | 40.0% | |
| ATTGGACGATCGTCAAAAAG+GGG | - | chr4.4:87304999-87305018 | None:intergenic | 40.0% | |
| ATTTGAATTGACGGCGAGTT+TGG | + | chr4.4:87304061-87304080 | MS.gene068259:intron | 40.0% | |
| CATTGGACGATCGTCAAAAA+GGG | - | chr4.4:87305000-87305019 | None:intergenic | 40.0% | |
| CTACAATCTCTTCCGCATTT+GGG | + | chr4.4:87303525-87303544 | MS.gene068259:CDS | 40.0% | |
| GCTAGACAGTAAGCATATAC+TGG | - | chr4.4:87305027-87305046 | None:intergenic | 40.0% | |
| GTATTCTTCTTGCAGTTCTC+TGG | + | chr4.4:87305445-87305464 | MS.gene068259:intron | 40.0% | |
| TCATTGGACGATCGTCAAAA+AGG | - | chr4.4:87305001-87305020 | None:intergenic | 40.0% | |
| TGACCTTGTTCTTGGAAACT+TGG | + | chr4.4:87305912-87305931 | MS.gene068259:CDS | 40.0% | |
| TGCATCAATGAGTTCGGAAT+CGG | - | chr4.4:87303629-87303648 | None:intergenic | 40.0% | |
| TTGTTACCTCATTGTGGAAG+CGG | + | chr4.4:87305862-87305881 | MS.gene068259:CDS | 40.0% | |
| TTTGTGGGTAATCCCAAATG+CGG | - | chr4.4:87303540-87303559 | None:intergenic | 40.0% | |
| ! | GACAGATGAAGTTGCTGATT+TGG | + | chr4.4:87303756-87303775 | MS.gene068259:CDS | 40.0% |
| ! | GTTGTCTTGTTACCTCATTG+TGG | + | chr4.4:87305856-87305875 | MS.gene068259:CDS | 40.0% |
| !! | AATTTAGAGGTCTCTGGAAC+AGG | + | chr4.4:87304273-87304292 | MS.gene068259:intron | 40.0% |
| !! | GAAGTTGCTGATTTGGCTAT+TGG | + | chr4.4:87303763-87303782 | MS.gene068259:CDS | 40.0% |
| !! | GGTCGAATTGCGATTTTTAG+TGG | + | chr4.4:87303997-87304016 | MS.gene068259:intron | 40.0% |
| !!! | AGATCAGGTTTTTGGTGGTA+GGG | - | chr4.4:87304968-87304987 | None:intergenic | 40.0% |
| !!! | TAGATCAGGTTTTTGGTGGT+AGG | - | chr4.4:87304969-87304988 | None:intergenic | 40.0% |
| AAACCCGTCACATCATCAAC+CGG | + | chr4.4:87305659-87305678 | MS.gene068259:CDS | 45.0% | |
| AGTGATGCTTCATGGGTGAA+TGG | - | chr4.4:87305053-87305072 | None:intergenic | 45.0% | |
| ATGGGATTACTTGGGCTACA+AGG | - | chr4.4:87303480-87303499 | None:intergenic | 45.0% | |
| ATGTCGAAGAGTGGAGACAA+AGG | - | chr4.4:87304369-87304388 | None:intergenic | 45.0% | |
| CAGGATCACAATCACAGTTG+TGG | + | chr4.4:87304232-87304251 | MS.gene068259:intron | 45.0% | |
| CATCAATGCACTTGGTCCAA+AGG | + | chr4.4:87305687-87305706 | MS.gene068259:CDS | 45.0% | |
| CCTCCAAGTTTCCAAGAACA+AGG | - | chr4.4:87305918-87305937 | None:intergenic | 45.0% | |
| CCTTGTTCTTGGAAACTTGG+AGG | + | chr4.4:87305915-87305934 | MS.gene068259:CDS | 45.0% | |
| CGAGTTTGGCAAAATCAAGG+TGG | + | chr4.4:87304075-87304094 | MS.gene068259:intron | 45.0% | |
| CGGCAATGCATCAATGAGTT+CGG | - | chr4.4:87303635-87303654 | None:intergenic | 45.0% | |
| GATCTGATCAACACCAACAC+TGG | - | chr4.4:87303680-87303699 | None:intergenic | 45.0% | |
| GCTACAATCTCTTCCGCATT+TGG | + | chr4.4:87303524-87303543 | MS.gene068259:CDS | 45.0% | |
| GGAAAACCGTTGGCATTGTT+GGG | + | chr4.4:87305467-87305486 | MS.gene068259:CDS | 45.0% | |
| GGCTACAAGGAGAACATCTA+TGG | - | chr4.4:87303467-87303486 | None:intergenic | 45.0% | |
| TCGCTGCATTTGTCTGCATT+TGG | + | chr4.4:87304312-87304331 | MS.gene068259:intron | 45.0% | |
| TGATTGTGATCCTGTTCCAG+AGG | - | chr4.4:87304226-87304245 | None:intergenic | 45.0% | |
| TGTCGAAGAGTGGAGACAAA+GGG | - | chr4.4:87304368-87304387 | None:intergenic | 45.0% | |
| TTCTAGCGAAAGCAGCTCTT+CGG | - | chr4.4:87305833-87305852 | None:intergenic | 45.0% | |
| TTGGCAAAATCAAGGTGGCA+TGG | + | chr4.4:87304080-87304099 | MS.gene068259:intron | 45.0% | |
| ! | AACTTGGAGGCCCATTTTCT+TGG | + | chr4.4:87305928-87305947 | MS.gene068259:CDS | 45.0% |
| ! | ATGCTGCTCTTGTCGCTTAT+AGG | + | chr4.4:87305097-87305116 | MS.gene068259:intron | 45.0% |
| ! | GCATTGCTTGATGGTCGTTT+AGG | + | chr4.4:87305766-87305785 | MS.gene068259:CDS | 45.0% |
| ! | TTGCTTGATGGTCGTTTAGG+TGG | + | chr4.4:87305769-87305788 | MS.gene068259:CDS | 45.0% |
| !! | AATTTAGAGGCCTCTGGAAC+AGG | + | chr4.4:87304213-87304232 | MS.gene068259:intron | 45.0% |
| !! | TTTGCGGTGAAGCATTGAGA+GGG | - | chr4.4:87304594-87304613 | None:intergenic | 45.0% |
| !!! | TTTTGCGGTGAAGCATTGAG+AGG | - | chr4.4:87304595-87304614 | None:intergenic | 45.0% |
| AACCCGTCACATCATCAACC+GGG | + | chr4.4:87305660-87305679 | MS.gene068259:CDS | 50.0% | |
| CATTGATGCATTGCCGAAGC+TGG | + | chr4.4:87303639-87303658 | MS.gene068259:CDS | 50.0% | |
| CGGCGAGTTTGGCAAAATCA+AGG | + | chr4.4:87304072-87304091 | MS.gene068259:intron | 50.0% | |
| CTGGTCTCTGCATTGCTTGA+TGG | + | chr4.4:87305757-87305776 | MS.gene068259:CDS | 50.0% | |
| GCAATTGCCAAGAGAGCTGA+AGG | + | chr4.4:87305508-87305527 | MS.gene068259:CDS | 50.0% | |
| GCAGTGCAGTGATGCTTCAT+GGG | - | chr4.4:87305060-87305079 | None:intergenic | 50.0% | |
| GGGAAAACCGTTGGCATTGT+TGG | + | chr4.4:87305466-87305485 | MS.gene068259:CDS | 50.0% | |
| GGTAGAAACTCGAACTGCCA+TGG | + | chr4.4:87305888-87305907 | MS.gene068259:CDS | 50.0% | |
| GGTTTCCTCTGTAAGAGAGC+AGG | - | chr4.4:87305644-87305663 | None:intergenic | 50.0% | |
| TCCAAGAACAAGGTCAGCCA+TGG | - | chr4.4:87305908-87305927 | None:intergenic | 50.0% | |
| TCTAGCGAAAGCAGCTCTTC+GGG | - | chr4.4:87305832-87305851 | None:intergenic | 50.0% | |
| TGCAGTGCAGTGATGCTTCA+TGG | - | chr4.4:87305061-87305080 | None:intergenic | 50.0% | |
| TGTTGCCTGCTCTCTTACAG+AGG | + | chr4.4:87305636-87305655 | MS.gene068259:CDS | 50.0% | |
| TTGATCTTCCGACCACTGCA+CGG | - | chr4.4:87303597-87303616 | None:intergenic | 50.0% | |
| ! | ATTGTTGGGCTGGGAAGGAT+TGG | + | chr4.4:87305481-87305500 | MS.gene068259:CDS | 50.0% |
| ! | CAAGTGCATTGATGACCTCC+CGG | - | chr4.4:87305681-87305700 | None:intergenic | 50.0% |
| ! | CAGTTCTCTGGGAAAACCGT+TGG | + | chr4.4:87305457-87305476 | MS.gene068259:intron | 50.0% |
| AACCGTTGGCATTGTTGGGC+TGG | + | chr4.4:87305471-87305490 | MS.gene068259:CDS | 55.0% | |
| AATGAGTTCGGAATCGGCGC+CGG | - | chr4.4:87303623-87303642 | None:intergenic | 55.0% | |
| ACCGTTGGCATTGTTGGGCT+GGG | + | chr4.4:87305472-87305491 | MS.gene068259:CDS | 55.0% | |
| ACCTCATTGTGGAAGCGGCA+CGG | + | chr4.4:87305867-87305886 | MS.gene068259:CDS | 55.0% | |
| AGCAATGCAGAGACCAGCTC+TGG | - | chr4.4:87305754-87305773 | None:intergenic | 55.0% | |
| AGCAGCTCTTCGGGAACATG+AGG | - | chr4.4:87305823-87305842 | None:intergenic | 55.0% | |
| CGGGAGGTCATCAATGCACT+TGG | + | chr4.4:87305679-87305698 | MS.gene068259:CDS | 55.0% | |
| GATGGTCGTTTAGGTGGAGC+TGG | + | chr4.4:87305775-87305794 | MS.gene068259:CDS | 55.0% | |
| GCCATGGCTGACCTTGTTCT+TGG | + | chr4.4:87305904-87305923 | MS.gene068259:CDS | 55.0% | |
| TCCCAGCCCAACAATGCCAA+CGG | - | chr4.4:87305476-87305495 | None:intergenic | 55.0% | |
| ! | GCATGTTGATGAGCCAGAGC+TGG | + | chr4.4:87305738-87305757 | MS.gene068259:CDS | 55.0% |
| ! | TTGGCATTGTTGGGCTGGGA+AGG | + | chr4.4:87305476-87305495 | MS.gene068259:CDS | 55.0% |
| !! | CCTCCCGGTTGATGATGTGA+CGG | - | chr4.4:87305666-87305685 | None:intergenic | 55.0% |
| !! | CTCCCGGTTGATGATGTGAC+GGG | - | chr4.4:87305665-87305684 | None:intergenic | 55.0% |
| AGCGACAAGAGCAGCATCGC+AGG | - | chr4.4:87305094-87305113 | None:intergenic | 60.0% | |
| CCGTCACATCATCAACCGGG+AGG | + | chr4.4:87305663-87305682 | MS.gene068259:CDS | 60.0% | |
| GCGACAAGAGCAGCATCGCA+GGG | - | chr4.4:87305093-87305112 | None:intergenic | 60.0% | |
| GCTTCGATCCGTGCAGTGGT+CGG | + | chr4.4:87303586-87303605 | MS.gene068259:CDS | 60.0% | |
| GTGGTCGGAAGATCAACCGC+CGG | + | chr4.4:87303601-87303620 | MS.gene068259:CDS | 60.0% | |
| !! | ACCGTGCCGCTTCCACAATG+AGG | - | chr4.4:87305871-87305890 | None:intergenic | 60.0% |
| CGGCGCTTCGATCCGTGCAG+TGG | + | chr4.4:87303582-87303601 | MS.gene068259:CDS | 70.0% | |
| ! | GAGTTCGGAATCGGCGCCGG+CGG | - | chr4.4:87303620-87303639 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 87303457 | 87305978 | 87303457 | ID=MS.gene068259 |
| chr4.4 | mRNA | 87303457 | 87305978 | 87303457 | ID=MS.gene068259.t1;Parent=MS.gene068259 |
| chr4.4 | exon | 87303457 | 87303879 | 87303457 | ID=MS.gene068259.t1.exon1;Parent=MS.gene068259.t1 |
| chr4.4 | CDS | 87303457 | 87303879 | 87303457 | ID=cds.MS.gene068259.t1;Parent=MS.gene068259.t1 |
| chr4.4 | exon | 87305460 | 87305978 | 87305460 | ID=MS.gene068259.t1.exon2;Parent=MS.gene068259.t1 |
| chr4.4 | CDS | 87305460 | 87305978 | 87305460 | ID=cds.MS.gene068259.t1;Parent=MS.gene068259.t1 |
| Gene Sequence |
| Protein sequence |
