Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33394.t1 | XP_003604486.1 | 94.9 | 313 | 13 | 1 | 1 | 313 | 1 | 310 | 1.10E-163 | 585.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33394.t1 | Q65CJ7 | 72.5 | 313 | 86 | 0 | 1 | 313 | 1 | 313 | 5.0e-128 | 458.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33394.t1 | G7JJE7 | 94.9 | 313 | 13 | 1 | 1 | 313 | 1 | 310 | 8.1e-164 | 585.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23623 | MS.gene33394 | PPI |
| MS.gene019405 | MS.gene33394 | PPI |
| MS.gene87846 | MS.gene33394 | PPI |
| MS.gene23624 | MS.gene33394 | PPI |
| MS.gene33394 | MS.gene37515 | PPI |
| MS.gene019406 | MS.gene33394 | PPI |
| MS.gene33394 | MS.gene019402 | PPI |
| MS.gene87848 | MS.gene33394 | PPI |
| MS.gene23633 | MS.gene33394 | PPI |
| MS.gene87842 | MS.gene33394 | PPI |
| MS.gene37508 | MS.gene33394 | PPI |
| MS.gene33394 | MS.gene019404 | PPI |
| MS.gene37513 | MS.gene33394 | PPI |
| MS.gene74946 | MS.gene33394 | PPI |
| MS.gene76198 | MS.gene33394 | PPI |
| MS.gene065032 | MS.gene33394 | PPI |
| MS.gene33394 | MS.gene37512 | PPI |
| MS.gene029300 | MS.gene33394 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33394.t1 | MTR_4g012960 | 94.888 | 313 | 13 | 1 | 1 | 313 | 1 | 310 | 0.0 | 600 |
| MS.gene33394.t1 | MTR_4g013100 | 88.535 | 314 | 35 | 1 | 1 | 313 | 1 | 314 | 0.0 | 567 |
| MS.gene33394.t1 | MTR_4g013090 | 88.498 | 313 | 36 | 0 | 1 | 313 | 1 | 313 | 0.0 | 567 |
| MS.gene33394.t1 | MTR_4g013135 | 84.665 | 313 | 48 | 0 | 1 | 313 | 1 | 313 | 0.0 | 508 |
| MS.gene33394.t1 | MTR_2g101840 | 61.783 | 314 | 119 | 1 | 1 | 313 | 1 | 314 | 8.75e-134 | 382 |
| MS.gene33394.t1 | MTR_8g033390 | 44.326 | 282 | 152 | 2 | 37 | 313 | 42 | 323 | 7.08e-87 | 263 |
| MS.gene33394.t1 | MTR_8g033410 | 41.042 | 307 | 170 | 3 | 15 | 313 | 23 | 326 | 1.09e-81 | 250 |
| MS.gene33394.t1 | MTR_8g033400 | 40.000 | 305 | 173 | 3 | 16 | 313 | 32 | 333 | 2.38e-81 | 249 |
| MS.gene33394.t1 | MTR_7g075830 | 41.985 | 262 | 137 | 4 | 65 | 312 | 54 | 314 | 4.91e-63 | 202 |
| MS.gene33394.t1 | MTR_4g013040 | 84.416 | 77 | 12 | 0 | 65 | 141 | 4 | 80 | 1.06e-38 | 135 |
| MS.gene33394.t1 | MTR_1g112510 | 32.759 | 290 | 171 | 5 | 43 | 308 | 60 | 349 | 2.34e-32 | 124 |
| MS.gene33394.t1 | MTR_4g005880 | 27.451 | 255 | 176 | 4 | 67 | 313 | 151 | 404 | 2.96e-26 | 109 |
| MS.gene33394.t1 | MTR_1g107480 | 27.059 | 255 | 177 | 4 | 67 | 313 | 118 | 371 | 5.21e-26 | 108 |
| MS.gene33394.t1 | MTR_3g005970 | 28.413 | 271 | 171 | 6 | 58 | 308 | 108 | 375 | 1.95e-22 | 96.7 |
| MS.gene33394.t1 | MTR_6g007170 | 27.692 | 260 | 171 | 5 | 59 | 306 | 113 | 367 | 3.29e-21 | 93.2 |
| MS.gene33394.t1 | MTR_7g078990 | 26.549 | 226 | 152 | 5 | 89 | 304 | 99 | 320 | 1.89e-16 | 80.1 |
| MS.gene33394.t1 | MTR_6g007175 | 25.591 | 254 | 163 | 5 | 60 | 306 | 83 | 317 | 7.76e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33394.t1 | AT1G79870 | 71.246 | 313 | 90 | 0 | 1 | 313 | 1 | 313 | 4.80e-158 | 444 |
| MS.gene33394.t1 | AT1G79870 | 66.773 | 313 | 85 | 1 | 1 | 313 | 1 | 294 | 1.33e-141 | 401 |
| MS.gene33394.t1 | AT1G12550 | 52.347 | 277 | 131 | 1 | 37 | 312 | 44 | 320 | 3.25e-99 | 295 |
| MS.gene33394.t1 | AT2G45630 | 41.554 | 296 | 170 | 3 | 21 | 313 | 43 | 338 | 1.16e-82 | 253 |
| MS.gene33394.t1 | AT1G68010 | 31.034 | 290 | 176 | 4 | 43 | 308 | 60 | 349 | 1.29e-30 | 119 |
| MS.gene33394.t1 | AT1G17745 | 28.013 | 307 | 202 | 6 | 25 | 313 | 97 | 402 | 2.36e-30 | 120 |
| MS.gene33394.t1 | AT1G68010 | 31.317 | 281 | 169 | 4 | 43 | 299 | 60 | 340 | 5.99e-30 | 117 |
| MS.gene33394.t1 | AT1G68010 | 30.928 | 291 | 176 | 5 | 43 | 308 | 60 | 350 | 7.03e-29 | 114 |
| MS.gene33394.t1 | AT4G34200 | 28.235 | 255 | 174 | 4 | 67 | 313 | 124 | 377 | 8.91e-28 | 113 |
| MS.gene33394.t1 | AT3G19480 | 28.516 | 256 | 172 | 6 | 67 | 313 | 109 | 362 | 1.64e-25 | 107 |
| MS.gene33394.t1 | AT1G17745 | 26.647 | 334 | 199 | 9 | 25 | 313 | 97 | 429 | 4.29e-25 | 105 |
| MS.gene33394.t1 | AT5G14780 | 28.049 | 246 | 168 | 4 | 73 | 310 | 99 | 343 | 7.14e-24 | 100 |
| MS.gene33394.t1 | AT5G14780 | 28.049 | 246 | 168 | 4 | 73 | 310 | 111 | 355 | 8.51e-24 | 100 |
| MS.gene33394.t1 | AT1G72190 | 30.350 | 257 | 159 | 5 | 54 | 295 | 102 | 353 | 1.19e-23 | 100 |
| MS.gene33394.t1 | AT5G14780 | 28.049 | 246 | 168 | 4 | 73 | 310 | 125 | 369 | 1.40e-23 | 100 |
| MS.gene33394.t1 | AT2G45630 | 33.333 | 123 | 80 | 2 | 21 | 141 | 43 | 165 | 1.43e-19 | 85.1 |
| MS.gene33394.t1 | AT1G01510 | 24.891 | 229 | 156 | 4 | 89 | 304 | 107 | 332 | 1.94e-14 | 74.3 |
Find 90 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGTTCTTGTTCTAAGTA+TGG | 0.245009 | 4.2:-87737995 | None:intergenic |
| TACCTCGACCAATGTTAATT+AGG | 0.280212 | 4.2:-87740144 | None:intergenic |
| GTTTGATTCTTTCACTTCTT+AGG | 0.280883 | 4.2:+87738284 | MS.gene33394:CDS |
| TGCATTGCTTGATGGTCGTT+TGG | 0.281347 | 4.2:+87740195 | MS.gene33394:CDS |
| GCCATGGCTGACCTTGTTCT+TGG | 0.291981 | 4.2:+87740334 | MS.gene33394:CDS |
| GCTACAATCTCTTCCGCATT+TGG | 0.301778 | 4.2:+87738023 | MS.gene33394:CDS |
| GGGAAAACCGTTGGCATTGT+TGG | 0.320417 | 4.2:+87739896 | MS.gene33394:CDS |
| GACAGATGAAGTTGCTGATT+TGG | 0.325124 | 4.2:+87738255 | MS.gene33394:CDS |
| ATTGTTGGGCTGGGCAGGAT+TGG | 0.340496 | 4.2:+87739911 | MS.gene33394:CDS |
| AACCGTTGGCATTGTTGGGC+TGG | 0.352529 | 4.2:+87739901 | MS.gene33394:CDS |
| TGTGATCGATTTGTTAGAAA+TGG | 0.353095 | 4.2:+87738319 | MS.gene33394:CDS |
| ACAGTGGCTTTCCAAGGAAA+TGG | 0.361820 | 4.2:-87740369 | None:intergenic |
| GAAGTTGCTGATTTGGCTAT+TGG | 0.363071 | 4.2:+87738262 | MS.gene33394:CDS |
| GATTTGTTAGAAATGGGAAT+TGG | 0.376741 | 4.2:+87738326 | MS.gene33394:CDS |
| CTACAATCTCTTCCGCATTT+GGG | 0.381021 | 4.2:+87738024 | MS.gene33394:CDS |
| CTGGTCTCTGCATTGCTTGA+TGG | 0.387204 | 4.2:+87740187 | MS.gene33394:CDS |
| CCTTGTTCTTGGAAACTTGG+AGG | 0.390337 | 4.2:+87740345 | MS.gene33394:CDS |
| TCTAGTGAAAGCAGCTCTTC+GGG | 0.391903 | 4.2:-87740259 | None:intergenic |
| TTGGCATTGTTGGGCTGGGC+AGG | 0.396717 | 4.2:+87739906 | MS.gene33394:CDS |
| TTCTAGTGAAAGCAGCTCTT+CGG | 0.399202 | 4.2:-87740260 | None:intergenic |
| GTGATCGATTTGTTAGAAAT+GGG | 0.402436 | 4.2:+87738320 | MS.gene33394:CDS |
| GCATTGCTTGATGGTCGTTT+GGG | 0.402915 | 4.2:+87740196 | MS.gene33394:CDS |
| CATTGATGCATTGCCGAAGC+TGG | 0.404615 | 4.2:+87738138 | MS.gene33394:CDS |
| GATGGTCGTTTGGGTGGAGC+TGG | 0.411075 | 4.2:+87740205 | MS.gene33394:CDS |
| AACTTGGAGGCCCATTTCCT+TGG | 0.411135 | 4.2:+87740358 | MS.gene33394:CDS |
| ACTTCATCTGTCAAAACATC+TGG | 0.413171 | 4.2:-87738244 | None:intergenic |
| TGACCTTGTTCTTGGAAACT+TGG | 0.428681 | 4.2:+87740342 | MS.gene33394:CDS |
| ATTAAAACCTCCAGCTCTCT+TGG | 0.438300 | 4.2:-87739945 | None:intergenic |
| CTTGAAATGATTTCCAGCTT+CGG | 0.439964 | 4.2:-87738151 | None:intergenic |
| GGAAAACCGTTGGCATTGTT+GGG | 0.441155 | 4.2:+87739897 | MS.gene33394:CDS |
| ACCGTTGGCATTGTTGGGCT+GGG | 0.444122 | 4.2:+87739902 | MS.gene33394:CDS |
| TGAGTTCTTGTTCTAAGTAT+GGG | 0.445989 | 4.2:-87737994 | None:intergenic |
| CAGTGGCTTTCCAAGGAAAT+GGG | 0.458174 | 4.2:-87740368 | None:intergenic |
| AAACCCGTCACATCATCAAC+CGG | 0.461012 | 4.2:+87740089 | MS.gene33394:CDS |
| AAAGCCACTGTTAACTCCCT+TGG | 0.464385 | 4.2:+87740381 | MS.gene33394:CDS |
| CGGCAATGCATCAATGAGTT+CGG | 0.472431 | 4.2:-87738131 | None:intergenic |
| TGCATCAATGAGTTCGGAAT+CGG | 0.477020 | 4.2:-87738125 | None:intergenic |
| ATCAATGCACTTGGTCCAAA+GGG | 0.477901 | 4.2:+87740118 | MS.gene33394:CDS |
| ATGTTAATTAGGAAACCCTT+TGG | 0.478234 | 4.2:-87740133 | None:intergenic |
| AGCTACAACGAGAACGCCTA+TGG | 0.491093 | 4.2:-87737963 | None:intergenic |
| TGATTATAATTTGACCACTA+AGG | 0.504677 | 4.2:+87738357 | MS.gene33394:CDS |
| TTCCTAATTAACATTGGTCG+AGG | 0.510362 | 4.2:+87740142 | MS.gene33394:CDS |
| GATCGATGTTAAGAAATGTA+AGG | 0.512339 | 4.2:+87738195 | MS.gene33394:CDS |
| CATCAATGCACTTGGTCCAA+AGG | 0.515625 | 4.2:+87740117 | MS.gene33394:CDS |
| TTGTTACCTCATTGTGGAAG+CGG | 0.517009 | 4.2:+87740292 | MS.gene33394:CDS |
| CGGGAGGTCATCAATGCACT+TGG | 0.525144 | 4.2:+87740109 | MS.gene33394:CDS |
| ACTGCAATTGCCAAGAGAGC+TGG | 0.527005 | 4.2:+87739935 | MS.gene33394:CDS |
| GTTAAGAAATGTAAGGAAAG+AGG | 0.527609 | 4.2:+87738202 | MS.gene33394:CDS |
| GAGTTCGGAATCGGCGCCGG+CGG | 0.528001 | 4.2:-87738116 | None:intergenic |
| AAGGGTTTCCTAATTAACAT+TGG | 0.531591 | 4.2:+87740136 | MS.gene33394:CDS |
| TGTCAAAACATCTGGAGTAA+TGG | 0.532217 | 4.2:-87738236 | None:intergenic |
| TGATTCTTTCACTTCTTAGG+AGG | 0.532746 | 4.2:+87738287 | MS.gene33394:CDS |
| AGCAATGCAGAGACCAGCTC+TGG | 0.534018 | 4.2:-87740181 | None:intergenic |
| CAGTTCTCTGGGAAAACCGT+TGG | 0.544962 | 4.2:+87739887 | MS.gene33394:intron |
| GATGCTAACTCAACAACACT+TGG | 0.546022 | 4.2:-87740025 | None:intergenic |
| GATCTGATCAACACCAACAC+TGG | 0.546627 | 4.2:-87738176 | None:intergenic |
| AATGAGTTCGGAATCGGCGC+CGG | 0.553708 | 4.2:-87738119 | None:intergenic |
| GCTTCGATCCGTGCAGTGGT+CGG | 0.555594 | 4.2:+87738085 | MS.gene33394:CDS |
| GAGTTAACAGTGGCTTTCCA+AGG | 0.557323 | 4.2:-87740375 | None:intergenic |
| GCATGTTGATGAGCCAGAGC+TGG | 0.562230 | 4.2:+87740168 | MS.gene33394:CDS |
| GGTTTCCTCTGTAAGAGAGC+AGG | 0.567739 | 4.2:-87740071 | None:intergenic |
| CTCCCGGTTGATGATGTGAC+GGG | 0.570845 | 4.2:-87740092 | None:intergenic |
| ATCATTTCAAGCTCCAGTGT+TGG | 0.571136 | 4.2:+87738163 | MS.gene33394:CDS |
| CAAGTGCATTGATGACCTCC+CGG | 0.574575 | 4.2:-87740108 | None:intergenic |
| AGCAGCTCTTCGGGAACATG+AGG | 0.575222 | 4.2:-87740250 | None:intergenic |
| CTATTCTAGAACTCAAAAGC+AGG | 0.579821 | 4.2:+87739982 | MS.gene33394:CDS |
| TTGCTTGATGGTCGTTTGGG+TGG | 0.580551 | 4.2:+87740199 | MS.gene33394:CDS |
| TCCAAGAACAAGGTCAGCCA+TGG | 0.581407 | 4.2:-87740335 | None:intergenic |
| TGTTGCCTGCTCTCTTACAG+AGG | 0.581856 | 4.2:+87740066 | MS.gene33394:CDS |
| CCTCCAAGTTTCCAAGAACA+AGG | 0.582993 | 4.2:-87740345 | None:intergenic |
| CGGCGCTTCGATCCGTGCAG+TGG | 0.591261 | 4.2:+87738081 | MS.gene33394:CDS |
| AACAACTAGTATGTCGCAGT+TGG | 0.597542 | 4.2:-87740047 | None:intergenic |
| GCCCAGCCCAACAATGCCAA+CGG | 0.600871 | 4.2:-87739903 | None:intergenic |
| ACCTCATTGTGGAAGCGGCA+CGG | 0.604339 | 4.2:+87740297 | MS.gene33394:CDS |
| CCTCCCGGTTGATGATGTGA+CGG | 0.605464 | 4.2:-87740093 | None:intergenic |
| GGTAGAAACTCGAACTGCCA+TGG | 0.612477 | 4.2:+87740318 | MS.gene33394:CDS |
| TTGATCTTCCGACCACTGCA+CGG | 0.621368 | 4.2:-87738093 | None:intergenic |
| GAGGCATGTAAATTAAACCA+AGG | 0.621442 | 4.2:-87740398 | None:intergenic |
| GCAATTGCCAAGAGAGCTGG+AGG | 0.622002 | 4.2:+87739938 | MS.gene33394:CDS |
| AGGCATGTAAATTAAACCAA+GGG | 0.623571 | 4.2:-87740397 | None:intergenic |
| CCAACCCTAATGGAATCCAT+AGG | 0.639380 | 4.2:+87737947 | None:intergenic |
| ACCGTGCCGCTTCCACAATG+AGG | 0.643583 | 4.2:-87740298 | None:intergenic |
| AGAAATGGGAATTGGAAACA+TGG | 0.644264 | 4.2:+87738334 | MS.gene33394:CDS |
| GTGGTCGGAAGATCAACCGC+CGG | 0.646039 | 4.2:+87738100 | MS.gene33394:CDS |
| TAAACCAAGGGAGTTAACAG+TGG | 0.661671 | 4.2:-87740385 | None:intergenic |
| AACCCGTCACATCATCAACC+GGG | 0.665920 | 4.2:+87740090 | MS.gene33394:CDS |
| TTTGTGGGTAATCCCAAATG+CGG | 0.667779 | 4.2:-87738036 | None:intergenic |
| TCACAGTTCTTAACTCAACA+CGG | 0.674329 | 4.2:+87738061 | MS.gene33394:CDS |
| GTTGTCTTGTTACCTCATTG+TGG | 0.680257 | 4.2:+87740286 | MS.gene33394:CDS |
| CCGTCACATCATCAACCGGG+AGG | 0.750270 | 4.2:+87740093 | MS.gene33394:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATATTATTTTTATATT+TGG | + | chr4.2:87739554-87739573 | MS.gene33394:intron | 0.0% |
| !! | AAAAATAATTAATTTCTTGT+TGG | - | chr4.2:87739847-87739866 | None:intergenic | 10.0% |
| !!! | AATTAATTATTTTTTTCATC+TGG | + | chr4.2:87739853-87739872 | MS.gene33394:intron | 10.0% |
| !! | CTGTAATATAAAAAATTTAG+AGG | + | chr4.2:87738698-87738717 | MS.gene33394:intron | 15.0% |
| !! | AACAGAAGCAATTAAATAAT+TGG | - | chr4.2:87739639-87739658 | None:intergenic | 20.0% |
| !! | ATAAGATTTACTTAACGATT+CGG | + | chr4.2:87739315-87739334 | MS.gene33394:intron | 20.0% |
| !! | TTTAAATTTGATCAGCTTAA+TGG | + | chr4.2:87738474-87738493 | MS.gene33394:intron | 20.0% |
| !!! | ATCATTTTTTTCTTCTGAAA+AGG | + | chr4.2:87739732-87739751 | MS.gene33394:intron | 20.0% |
| !!! | CATAAGCTTTCATTTAAAAT+TGG | + | chr4.2:87739667-87739686 | MS.gene33394:intron | 20.0% |
| ! | ATAAAAAATTTAGAGGTCTC+TGG | + | chr4.2:87738705-87738724 | MS.gene33394:intron | 25.0% |
| ! | CAATAGATACTTGGTTAATA+GGG | - | chr4.2:87738389-87738408 | None:intergenic | 25.0% |
| ! | TGATTATAATTTGACCACTA+AGG | + | chr4.2:87738357-87738376 | MS.gene33394:CDS | 25.0% |
| ! | TGTATGAACAAGTACATATA+AGG | - | chr4.2:87738896-87738915 | None:intergenic | 25.0% |
| ! | TTGAGATTCTAATTGTGAAT+CGG | - | chr4.2:87739353-87739372 | None:intergenic | 25.0% |
| ! | TTTCTTGTTGGAAAATGAAA+TGG | - | chr4.2:87739835-87739854 | None:intergenic | 25.0% |
| !! | CAAGTGTATATTTGAAATGA+CGG | + | chr4.2:87738550-87738569 | MS.gene33394:intron | 25.0% |
| !! | TTAAGAACTGTGATTTTTGT+GGG | - | chr4.2:87738054-87738073 | None:intergenic | 25.0% |
| !!! | AGTATCATGTATTTTGTTGT+AGG | + | chr4.2:87738983-87739002 | MS.gene33394:intron | 25.0% |
| !!! | ATATCAAGTTTTAGAGTGTT+AGG | + | chr4.2:87738768-87738787 | MS.gene33394:intron | 25.0% |
| !!! | TATCAAGTTTTAGAGTGTTA+GGG | + | chr4.2:87738769-87738788 | MS.gene33394:intron | 25.0% |
| AAGGGTTTCCTAATTAACAT+TGG | + | chr4.2:87740136-87740155 | MS.gene33394:CDS | 30.0% | |
| AGTGGAATTGTATACAAACT+TGG | + | chr4.2:87738866-87738885 | MS.gene33394:intron | 30.0% | |
| ATCTTGAGTTTATACTCAAG+TGG | + | chr4.2:87738929-87738948 | MS.gene33394:intron | 30.0% | |
| ATGAGTTAACCTTTCTACAT+AGG | + | chr4.2:87738836-87738855 | MS.gene33394:intron | 30.0% | |
| ATGTTAATTAGGAAACCCTT+TGG | - | chr4.2:87740136-87740155 | None:intergenic | 30.0% | |
| CTTTGATAAAAAGGCAACAT+CGG | + | chr4.2:87738956-87738975 | MS.gene33394:intron | 30.0% | |
| GAATCTCAATTCGATAATCT+TGG | + | chr4.2:87739364-87739383 | MS.gene33394:intron | 30.0% | |
| GATCGATGTTAAGAAATGTA+AGG | + | chr4.2:87738195-87738214 | MS.gene33394:CDS | 30.0% | |
| GCAATAGATACTTGGTTAAT+AGG | - | chr4.2:87738390-87738409 | None:intergenic | 30.0% | |
| GTTAAGAAATGTAAGGAAAG+AGG | + | chr4.2:87738202-87738221 | MS.gene33394:CDS | 30.0% | |
| GTTTGATTCTTTCACTTCTT+AGG | + | chr4.2:87738284-87738303 | MS.gene33394:CDS | 30.0% | |
| TAGATAACTATGTCAAAGAG+TGG | - | chr4.2:87738806-87738825 | None:intergenic | 30.0% | |
| TCACAAAAGCAATAGATACT+TGG | - | chr4.2:87738398-87738417 | None:intergenic | 30.0% | |
| TCTTGAGTTTATACTCAAGT+GGG | + | chr4.2:87738930-87738949 | MS.gene33394:intron | 30.0% | |
| TTCTACATAGGAAAAATGAG+TGG | + | chr4.2:87738848-87738867 | MS.gene33394:intron | 30.0% | |
| ! | GTTAAGAACTGTGATTTTTG+TGG | - | chr4.2:87738055-87738074 | None:intergenic | 30.0% |
| ! | TAATAGGGTTTTTACCTTAG+TGG | - | chr4.2:87738374-87738393 | None:intergenic | 30.0% |
| ! | TACTTAACGATTCGGAAAAT+AGG | + | chr4.2:87739323-87739342 | MS.gene33394:intron | 30.0% |
| ! | TATTTTTCTTGCAGTTCTCT+GGG | + | chr4.2:87739876-87739895 | MS.gene33394:intron | 30.0% |
| ! | TGAACAATAGATCAGGTTTT+TGG | - | chr4.2:87739404-87739423 | None:intergenic | 30.0% |
| ! | TGAGTTCTTGTTCTAAGTAT+GGG | - | chr4.2:87737997-87738016 | None:intergenic | 30.0% |
| ! | TTGAGTTCTTGTTCTAAGTA+TGG | - | chr4.2:87737998-87738017 | None:intergenic | 30.0% |
| !! | ACAAAGACAGCTTCATTTTT+CGG | - | chr4.2:87739038-87739057 | None:intergenic | 30.0% |
| !! | CTCATTTTTCCTATGTAGAA+AGG | - | chr4.2:87738848-87738867 | None:intergenic | 30.0% |
| !! | GATTTGTTAGAAATGGGAAT+TGG | + | chr4.2:87738326-87738345 | MS.gene33394:CDS | 30.0% |
| !! | GTGATCGATTTGTTAGAAAT+GGG | + | chr4.2:87738320-87738339 | MS.gene33394:CDS | 30.0% |
| !! | TGTGATCGATTTGTTAGAAA+TGG | + | chr4.2:87738319-87738338 | MS.gene33394:CDS | 30.0% |
| !!! | CTTTTGAGTTCTAGAATAGT+AGG | - | chr4.2:87739981-87740000 | None:intergenic | 30.0% |
| ACTTCATCTGTCAAAACATC+TGG | - | chr4.2:87738247-87738266 | None:intergenic | 35.0% | |
| AGAAATGGGAATTGGAAACA+TGG | + | chr4.2:87738334-87738353 | MS.gene33394:CDS | 35.0% | |
| AGTGGGTGACTTTGATAAAA+AGG | + | chr4.2:87738947-87738966 | MS.gene33394:intron | 35.0% | |
| ATTAAGATTCACATGCTGAG+AGG | - | chr4.2:87739171-87739190 | None:intergenic | 35.0% | |
| ATTGGACGATCTTCAAAAAG+GGG | - | chr4.2:87739427-87739446 | None:intergenic | 35.0% | |
| CATTGGACGATCTTCAAAAA+GGG | - | chr4.2:87739428-87739447 | None:intergenic | 35.0% | |
| CTTGAAATGATTTCCAGCTT+CGG | - | chr4.2:87738154-87738173 | None:intergenic | 35.0% | |
| GTCATACTGCTCATCAAAAT+TGG | + | chr4.2:87739776-87739795 | MS.gene33394:intron | 35.0% | |
| TACCTCGACCAATGTTAATT+AGG | - | chr4.2:87740147-87740166 | None:intergenic | 35.0% | |
| TCACAGTTCTTAACTCAACA+CGG | + | chr4.2:87738061-87738080 | MS.gene33394:CDS | 35.0% | |
| TCATTGGACGATCTTCAAAA+AGG | - | chr4.2:87739429-87739448 | None:intergenic | 35.0% | |
| TCGTAAGATACTGATGACAT+TGG | - | chr4.2:87739072-87739091 | None:intergenic | 35.0% | |
| TGATTCTTTCACTTCTTAGG+AGG | + | chr4.2:87738287-87738306 | MS.gene33394:CDS | 35.0% | |
| TTCCTAATTAACATTGGTCG+AGG | + | chr4.2:87740142-87740161 | MS.gene33394:CDS | 35.0% | |
| TTGCTGAATCTCATGAAGTT+GGG | + | chr4.2:87739196-87739215 | MS.gene33394:intron | 35.0% | |
| TTTGCTGAATCTCATGAAGT+TGG | + | chr4.2:87739195-87739214 | MS.gene33394:intron | 35.0% | |
| ! | GTATTTTTCTTGCAGTTCTC+TGG | + | chr4.2:87739875-87739894 | MS.gene33394:intron | 35.0% |
| ! | TGTCAAAACATCTGGAGTAA+TGG | - | chr4.2:87738239-87738258 | None:intergenic | 35.0% |
| !! | ACAATAGATCAGGTTTTTGG+TGG | - | chr4.2:87739401-87739420 | None:intergenic | 35.0% |
| !! | CTATTCTAGAACTCAAAAGC+AGG | + | chr4.2:87739982-87740001 | MS.gene33394:CDS | 35.0% |
| AAAGGGGTGAACAATAGATC+AGG | - | chr4.2:87739411-87739430 | None:intergenic | 40.0% | |
| AACAACTAGTATGTCGCAGT+TGG | - | chr4.2:87740050-87740069 | None:intergenic | 40.0% | |
| AAGCATATACTGGAGGTCAT+TGG | - | chr4.2:87739445-87739464 | None:intergenic | 40.0% | |
| ACAGTGAGATGACGAAATCA+AGG | - | chr4.2:87738648-87738667 | None:intergenic | 40.0% | |
| AGACAGTAAGCATATACTGG+AGG | - | chr4.2:87739452-87739471 | None:intergenic | 40.0% | |
| ATCAATGCACTTGGTCCAAA+GGG | + | chr4.2:87740118-87740137 | MS.gene33394:CDS | 40.0% | |
| ATCATTTCAAGCTCCAGTGT+TGG | + | chr4.2:87738163-87738182 | MS.gene33394:CDS | 40.0% | |
| ATGTCAAAGAGTGGAGACAA+AGG | - | chr4.2:87738797-87738816 | None:intergenic | 40.0% | |
| ATTAAAACCTCCAGCTCTCT+TGG | - | chr4.2:87739948-87739967 | None:intergenic | 40.0% | |
| CGAGTTTGGCAAAATCAAGT+TGG | + | chr4.2:87738573-87738592 | MS.gene33394:intron | 40.0% | |
| CTACAATCTCTTCCGCATTT+GGG | + | chr4.2:87738024-87738043 | MS.gene33394:CDS | 40.0% | |
| GATGCTAACTCAACAACACT+TGG | - | chr4.2:87740028-87740047 | None:intergenic | 40.0% | |
| GCTAGACAGTAAGCATATAC+TGG | - | chr4.2:87739455-87739474 | None:intergenic | 40.0% | |
| TAAACCAAGGGAGTTAACAG+TGG | - | chr4.2:87740388-87740407 | None:intergenic | 40.0% | |
| TGACCTTGTTCTTGGAAACT+TGG | + | chr4.2:87740342-87740361 | MS.gene33394:CDS | 40.0% | |
| TGCATCAATGAGTTCGGAAT+CGG | - | chr4.2:87738128-87738147 | None:intergenic | 40.0% | |
| TGTCAAAGAGTGGAGACAAA+GGG | - | chr4.2:87738796-87738815 | None:intergenic | 40.0% | |
| TTCTAGTGAAAGCAGCTCTT+CGG | - | chr4.2:87740263-87740282 | None:intergenic | 40.0% | |
| TTGTTACCTCATTGTGGAAG+CGG | + | chr4.2:87740292-87740311 | MS.gene33394:CDS | 40.0% | |
| TTTGTGGGTAATCCCAAATG+CGG | - | chr4.2:87738039-87738058 | None:intergenic | 40.0% | |
| ! | ATTTGAAATGACGGCGAGTT+TGG | + | chr4.2:87738559-87738578 | MS.gene33394:intron | 40.0% |
| ! | GACAGATGAAGTTGCTGATT+TGG | + | chr4.2:87738255-87738274 | MS.gene33394:CDS | 40.0% |
| ! | GTTGTCTTGTTACCTCATTG+TGG | + | chr4.2:87740286-87740305 | MS.gene33394:CDS | 40.0% |
| !! | AATTTAGAGGTCTCTGGAAC+AGG | + | chr4.2:87738711-87738730 | MS.gene33394:intron | 40.0% |
| !! | GAAGTTGCTGATTTGGCTAT+TGG | + | chr4.2:87738262-87738281 | MS.gene33394:CDS | 40.0% |
| !! | GGTCGAATTGCGATTTTTAG+TGG | + | chr4.2:87738495-87738514 | MS.gene33394:intron | 40.0% |
| !!! | AGATCAGGTTTTTGGTGGTA+GGG | - | chr4.2:87739396-87739415 | None:intergenic | 40.0% |
| !!! | TAGATCAGGTTTTTGGTGGT+AGG | - | chr4.2:87739397-87739416 | None:intergenic | 40.0% |
| !!! | TTTTCGGTGAAGCATTGAGA+GGG | - | chr4.2:87739022-87739041 | None:intergenic | 40.0% |
| !!! | TTTTTCGGTGAAGCATTGAG+AGG | - | chr4.2:87739023-87739042 | None:intergenic | 40.0% |
| AAACCCGTCACATCATCAAC+CGG | + | chr4.2:87740089-87740108 | MS.gene33394:CDS | 45.0% | |
| AAAGCCACTGTTAACTCCCT+TGG | + | chr4.2:87740381-87740400 | MS.gene33394:CDS | 45.0% | |
| ACAGTGGCTTTCCAAGGAAA+TGG | - | chr4.2:87740372-87740391 | None:intergenic | 45.0% | |
| AGAGTGCAGTGATGCTTCAT+GGG | - | chr4.2:87739488-87739507 | None:intergenic | 45.0% | |
| AGTGATGCTTCATGGGTGAA+TGG | - | chr4.2:87739481-87739500 | None:intergenic | 45.0% | |
| CAGTGGCTTTCCAAGGAAAT+GGG | - | chr4.2:87740371-87740390 | None:intergenic | 45.0% | |
| CATCAATGCACTTGGTCCAA+AGG | + | chr4.2:87740117-87740136 | MS.gene33394:CDS | 45.0% | |
| CCTCCAAGTTTCCAAGAACA+AGG | - | chr4.2:87740348-87740367 | None:intergenic | 45.0% | |
| CCTTGTTCTTGGAAACTTGG+AGG | + | chr4.2:87740345-87740364 | MS.gene33394:CDS | 45.0% | |
| CGGCAATGCATCAATGAGTT+CGG | - | chr4.2:87738134-87738153 | None:intergenic | 45.0% | |
| GAGTTAACAGTGGCTTTCCA+AGG | - | chr4.2:87740378-87740397 | None:intergenic | 45.0% | |
| GATCTGATCAACACCAACAC+TGG | - | chr4.2:87738179-87738198 | None:intergenic | 45.0% | |
| GCTACAATCTCTTCCGCATT+TGG | + | chr4.2:87738023-87738042 | MS.gene33394:CDS | 45.0% | |
| GGAAAACCGTTGGCATTGTT+GGG | + | chr4.2:87739897-87739916 | MS.gene33394:CDS | 45.0% | |
| TCTAGTGAAAGCAGCTCTTC+GGG | - | chr4.2:87740262-87740281 | None:intergenic | 45.0% | |
| TTCACAGTTGTCGCTGCATT+TGG | + | chr4.2:87738740-87738759 | MS.gene33394:intron | 45.0% | |
| ! | ATGCTGCTCTTGTCGCTTAT+AGG | + | chr4.2:87739527-87739546 | MS.gene33394:intron | 45.0% |
| ! | GCATTGCTTGATGGTCGTTT+GGG | + | chr4.2:87740196-87740215 | MS.gene33394:CDS | 45.0% |
| ! | TGCATTGCTTGATGGTCGTT+TGG | + | chr4.2:87740195-87740214 | MS.gene33394:CDS | 45.0% |
| AACCCGTCACATCATCAACC+GGG | + | chr4.2:87740090-87740109 | MS.gene33394:CDS | 50.0% | |
| AACTTGGAGGCCCATTTCCT+TGG | + | chr4.2:87740358-87740377 | MS.gene33394:CDS | 50.0% | |
| ACTGCAATTGCCAAGAGAGC+TGG | + | chr4.2:87739935-87739954 | MS.gene33394:CDS | 50.0% | |
| AGCTACAACGAGAACGCCTA+TGG | - | chr4.2:87737966-87737985 | None:intergenic | 50.0% | |
| CAGAGTGCAGTGATGCTTCA+TGG | - | chr4.2:87739489-87739508 | None:intergenic | 50.0% | |
| CATTGATGCATTGCCGAAGC+TGG | + | chr4.2:87738138-87738157 | MS.gene33394:CDS | 50.0% | |
| CTGGTCTCTGCATTGCTTGA+TGG | + | chr4.2:87740187-87740206 | MS.gene33394:CDS | 50.0% | |
| GGGAAAACCGTTGGCATTGT+TGG | + | chr4.2:87739896-87739915 | MS.gene33394:CDS | 50.0% | |
| GGTAGAAACTCGAACTGCCA+TGG | + | chr4.2:87740318-87740337 | MS.gene33394:CDS | 50.0% | |
| GGTTTCCTCTGTAAGAGAGC+AGG | - | chr4.2:87740074-87740093 | None:intergenic | 50.0% | |
| TCCAAGAACAAGGTCAGCCA+TGG | - | chr4.2:87740338-87740357 | None:intergenic | 50.0% | |
| TGTTGCCTGCTCTCTTACAG+AGG | + | chr4.2:87740066-87740085 | MS.gene33394:CDS | 50.0% | |
| TTGATCTTCCGACCACTGCA+CGG | - | chr4.2:87738096-87738115 | None:intergenic | 50.0% | |
| ! | CAAGTGCATTGATGACCTCC+CGG | - | chr4.2:87740111-87740130 | None:intergenic | 50.0% |
| ! | CAGTTCTCTGGGAAAACCGT+TGG | + | chr4.2:87739887-87739906 | MS.gene33394:intron | 50.0% |
| ! | TTGCTTGATGGTCGTTTGGG+TGG | + | chr4.2:87740199-87740218 | MS.gene33394:CDS | 50.0% |
| AACCGTTGGCATTGTTGGGC+TGG | + | chr4.2:87739901-87739920 | MS.gene33394:CDS | 55.0% | |
| AATGAGTTCGGAATCGGCGC+CGG | - | chr4.2:87738122-87738141 | None:intergenic | 55.0% | |
| ACCGTTGGCATTGTTGGGCT+GGG | + | chr4.2:87739902-87739921 | MS.gene33394:CDS | 55.0% | |
| ACCTCATTGTGGAAGCGGCA+CGG | + | chr4.2:87740297-87740316 | MS.gene33394:CDS | 55.0% | |
| AGCAATGCAGAGACCAGCTC+TGG | - | chr4.2:87740184-87740203 | None:intergenic | 55.0% | |
| AGCAGCTCTTCGGGAACATG+AGG | - | chr4.2:87740253-87740272 | None:intergenic | 55.0% | |
| AGCGACAAGAGCAGCATCAC+AGG | - | chr4.2:87739524-87739543 | None:intergenic | 55.0% | |
| CGGGAGGTCATCAATGCACT+TGG | + | chr4.2:87740109-87740128 | MS.gene33394:CDS | 55.0% | |
| GCAATTGCCAAGAGAGCTGG+AGG | + | chr4.2:87739938-87739957 | MS.gene33394:CDS | 55.0% | |
| GCCATGGCTGACCTTGTTCT+TGG | + | chr4.2:87740334-87740353 | MS.gene33394:CDS | 55.0% | |
| GCGACAAGAGCAGCATCACA+GGG | - | chr4.2:87739523-87739542 | None:intergenic | 55.0% | |
| ! | ATTGTTGGGCTGGGCAGGAT+TGG | + | chr4.2:87739911-87739930 | MS.gene33394:CDS | 55.0% |
| ! | GCATGTTGATGAGCCAGAGC+TGG | + | chr4.2:87740168-87740187 | MS.gene33394:CDS | 55.0% |
| !! | CCTCCCGGTTGATGATGTGA+CGG | - | chr4.2:87740096-87740115 | None:intergenic | 55.0% |
| !! | CTCCCGGTTGATGATGTGAC+GGG | - | chr4.2:87740095-87740114 | None:intergenic | 55.0% |
| CCGTCACATCATCAACCGGG+AGG | + | chr4.2:87740093-87740112 | MS.gene33394:CDS | 60.0% | |
| GATGGTCGTTTGGGTGGAGC+TGG | + | chr4.2:87740205-87740224 | MS.gene33394:CDS | 60.0% | |
| GCCCAGCCCAACAATGCCAA+CGG | - | chr4.2:87739906-87739925 | None:intergenic | 60.0% | |
| GCTTCGATCCGTGCAGTGGT+CGG | + | chr4.2:87738085-87738104 | MS.gene33394:CDS | 60.0% | |
| GTGGTCGGAAGATCAACCGC+CGG | + | chr4.2:87738100-87738119 | MS.gene33394:CDS | 60.0% | |
| ! | TTGGCATTGTTGGGCTGGGC+AGG | + | chr4.2:87739906-87739925 | MS.gene33394:CDS | 60.0% |
| !! | ACCGTGCCGCTTCCACAATG+AGG | - | chr4.2:87740301-87740320 | None:intergenic | 60.0% |
| CGGCGCTTCGATCCGTGCAG+TGG | + | chr4.2:87738081-87738100 | MS.gene33394:CDS | 70.0% | |
| ! | GAGTTCGGAATCGGCGCCGG+CGG | - | chr4.2:87738119-87738138 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 87737956 | 87740408 | 87737956 | ID=MS.gene33394 |
| chr4.2 | mRNA | 87737956 | 87740408 | 87737956 | ID=MS.gene33394.t1;Parent=MS.gene33394 |
| chr4.2 | exon | 87737956 | 87738378 | 87737956 | ID=MS.gene33394.t1.exon1;Parent=MS.gene33394.t1 |
| chr4.2 | CDS | 87737956 | 87738378 | 87737956 | ID=cds.MS.gene33394.t1;Parent=MS.gene33394.t1 |
| chr4.2 | exon | 87739890 | 87740408 | 87739890 | ID=MS.gene33394.t1.exon2;Parent=MS.gene33394.t1 |
| chr4.2 | CDS | 87739890 | 87740408 | 87739890 | ID=cds.MS.gene33394.t1;Parent=MS.gene33394.t1 |
| Gene Sequence |
| Protein sequence |
