Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068262.t1 | XP_003604495.2 | 95.8 | 313 | 13 | 0 | 1 | 313 | 343 | 655 | 5.20E-169 | 603.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068262.t1 | Q9CA90 | 73.5 | 313 | 83 | 0 | 1 | 313 | 1 | 313 | 1.0e-128 | 461.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068262.t1 | G7JJF6 | 95.8 | 313 | 13 | 0 | 1 | 313 | 1 | 313 | 3.8e-169 | 603.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019405 | MS.gene068262 | PPI |
| MS.gene87846 | MS.gene068262 | PPI |
| MS.gene068262 | MS.gene37512 | PPI |
| MS.gene23624 | MS.gene068262 | PPI |
| MS.gene019406 | MS.gene068262 | PPI |
| MS.gene87848 | MS.gene068262 | PPI |
| MS.gene23633 | MS.gene068262 | PPI |
| MS.gene87842 | MS.gene068262 | PPI |
| MS.gene37508 | MS.gene068262 | PPI |
| MS.gene37513 | MS.gene068262 | PPI |
| MS.gene068262 | MS.gene37515 | PPI |
| MS.gene74946 | MS.gene068262 | PPI |
| MS.gene76198 | MS.gene068262 | PPI |
| MS.gene065032 | MS.gene068262 | PPI |
| MS.gene068262 | MS.gene019402 | PPI |
| MS.gene068262 | MS.gene019404 | PPI |
| MS.gene029300 | MS.gene068262 | PPI |
| MS.gene23623 | MS.gene068262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068262.t1 | MTR_4g013090 | 95.847 | 313 | 13 | 0 | 1 | 313 | 1 | 313 | 0.0 | 610 |
| MS.gene068262.t1 | MTR_4g013100 | 88.535 | 314 | 35 | 1 | 1 | 313 | 1 | 314 | 0.0 | 562 |
| MS.gene068262.t1 | MTR_4g012960 | 87.220 | 313 | 37 | 1 | 1 | 313 | 1 | 310 | 0.0 | 559 |
| MS.gene068262.t1 | MTR_4g013135 | 86.581 | 313 | 42 | 0 | 1 | 313 | 1 | 313 | 0.0 | 519 |
| MS.gene068262.t1 | MTR_2g101840 | 61.465 | 314 | 120 | 1 | 1 | 313 | 1 | 314 | 3.47e-130 | 373 |
| MS.gene068262.t1 | MTR_8g033390 | 45.965 | 285 | 143 | 3 | 37 | 313 | 42 | 323 | 3.16e-90 | 272 |
| MS.gene068262.t1 | MTR_8g033400 | 40.656 | 305 | 171 | 3 | 16 | 313 | 32 | 333 | 9.83e-83 | 253 |
| MS.gene068262.t1 | MTR_8g033410 | 39.739 | 307 | 174 | 3 | 15 | 313 | 23 | 326 | 2.33e-80 | 247 |
| MS.gene068262.t1 | MTR_7g075830 | 42.222 | 270 | 141 | 4 | 57 | 312 | 46 | 314 | 3.93e-65 | 207 |
| MS.gene068262.t1 | MTR_4g013040 | 75.949 | 79 | 19 | 0 | 65 | 143 | 4 | 82 | 3.66e-36 | 129 |
| MS.gene068262.t1 | MTR_1g112510 | 33.333 | 285 | 164 | 7 | 49 | 308 | 66 | 349 | 4.16e-34 | 128 |
| MS.gene068262.t1 | MTR_4g005880 | 29.845 | 258 | 166 | 5 | 67 | 313 | 151 | 404 | 2.47e-28 | 115 |
| MS.gene068262.t1 | MTR_1g107480 | 27.703 | 296 | 198 | 6 | 30 | 313 | 80 | 371 | 2.66e-28 | 115 |
| MS.gene068262.t1 | MTR_6g007170 | 29.278 | 263 | 167 | 6 | 57 | 306 | 111 | 367 | 1.45e-24 | 102 |
| MS.gene068262.t1 | MTR_3g005970 | 26.838 | 272 | 176 | 5 | 57 | 308 | 107 | 375 | 1.29e-23 | 100 |
| MS.gene068262.t1 | MTR_7g078990 | 25.214 | 234 | 164 | 4 | 81 | 304 | 88 | 320 | 6.65e-17 | 81.6 |
| MS.gene068262.t1 | MTR_6g007175 | 26.070 | 257 | 164 | 5 | 57 | 306 | 80 | 317 | 2.49e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068262.t1 | AT1G79870 | 73.482 | 313 | 83 | 0 | 1 | 313 | 1 | 313 | 1.57e-161 | 452 |
| MS.gene068262.t1 | AT1G79870 | 68.690 | 313 | 79 | 1 | 1 | 313 | 1 | 294 | 1.20e-144 | 409 |
| MS.gene068262.t1 | AT1G12550 | 51.986 | 277 | 132 | 1 | 37 | 312 | 44 | 320 | 2.59e-99 | 295 |
| MS.gene068262.t1 | AT2G45630 | 43.728 | 279 | 155 | 2 | 37 | 313 | 60 | 338 | 5.75e-81 | 249 |
| MS.gene068262.t1 | AT1G17745 | 28.620 | 297 | 198 | 5 | 30 | 313 | 107 | 402 | 2.30e-32 | 126 |
| MS.gene068262.t1 | AT4G34200 | 28.328 | 293 | 200 | 5 | 30 | 313 | 86 | 377 | 1.55e-31 | 124 |
| MS.gene068262.t1 | AT1G68010 | 31.228 | 285 | 172 | 4 | 48 | 308 | 65 | 349 | 4.85e-31 | 120 |
| MS.gene068262.t1 | AT1G68010 | 31.522 | 276 | 165 | 4 | 48 | 299 | 65 | 340 | 1.36e-30 | 119 |
| MS.gene068262.t1 | AT1G68010 | 31.119 | 286 | 172 | 5 | 48 | 308 | 65 | 350 | 2.19e-29 | 115 |
| MS.gene068262.t1 | AT3G19480 | 30.116 | 259 | 164 | 7 | 67 | 313 | 109 | 362 | 1.31e-27 | 113 |
| MS.gene068262.t1 | AT1G17745 | 26.316 | 323 | 199 | 7 | 30 | 313 | 107 | 429 | 2.15e-26 | 109 |
| MS.gene068262.t1 | AT1G72190 | 28.571 | 259 | 155 | 5 | 57 | 295 | 105 | 353 | 2.92e-24 | 101 |
| MS.gene068262.t1 | AT5G14780 | 27.481 | 262 | 181 | 4 | 57 | 310 | 95 | 355 | 8.26e-24 | 100 |
| MS.gene068262.t1 | AT5G14780 | 27.481 | 262 | 181 | 4 | 57 | 310 | 83 | 343 | 1.06e-23 | 99.8 |
| MS.gene068262.t1 | AT5G14780 | 27.481 | 262 | 181 | 4 | 57 | 310 | 109 | 369 | 1.30e-23 | 100 |
| MS.gene068262.t1 | AT2G45630 | 36.441 | 118 | 74 | 1 | 37 | 153 | 60 | 177 | 6.65e-18 | 80.5 |
| MS.gene068262.t1 | AT1G01510 | 23.207 | 237 | 169 | 3 | 81 | 304 | 96 | 332 | 1.11e-14 | 75.1 |
Find 87 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAAAACGGTTGGCATTAT+TGG | 0.182597 | 4.4:+87285953 | MS.gene068262:CDS |
| TTTGGGTAGTACTTGTATTT+TGG | 0.194546 | 4.4:-87286064 | None:intergenic |
| ATTAAAACCTTCAGCTCTTT+TGG | 0.229484 | 4.4:-87286002 | None:intergenic |
| CATGTTCCCAAAGAGCTATT+TGG | 0.235588 | 4.4:+87286310 | MS.gene068262:CDS |
| TTCTAGCCCAAATAGCTCTT+TGG | 0.251251 | 4.4:-87286317 | None:intergenic |
| TACCTCGACCGATGTTAATT+AGG | 0.273239 | 4.4:-87286201 | None:intergenic |
| GCCATGGCTGACCTTGTTCT+TGG | 0.291981 | 4.4:+87286391 | MS.gene068262:CDS |
| GATGCTAACTCAACAACATT+TGG | 0.293329 | 4.4:-87286082 | None:intergenic |
| GTTTGATGCTTACACTTCTT+AGG | 0.302322 | 4.4:+87284092 | MS.gene068262:CDS |
| GACTGACGATGTTGCTGATT+TGG | 0.318415 | 4.4:+87284063 | MS.gene068262:CDS |
| GTAAAACGGTTGGCATTATT+GGG | 0.321722 | 4.4:+87285954 | MS.gene068262:CDS |
| TCTAGCCCAAATAGCTCTTT+GGG | 0.333771 | 4.4:-87286316 | None:intergenic |
| TGCACTCCTTGAAGGTCGTT+TGG | 0.362425 | 4.4:+87286252 | MS.gene068262:CDS |
| CTCCTTGAAGGTCGTTTGGC+TGG | 0.362736 | 4.4:+87286256 | MS.gene068262:CDS |
| GATGTTGCTGATTTGGCTAT+TGG | 0.367670 | 4.4:+87284070 | MS.gene068262:CDS |
| TTGAGTTCTTGTTCTAAGTA+AGG | 0.368394 | 4.4:-87283803 | None:intergenic |
| ATGTTCCCAAAGAGCTATTT+GGG | 0.369726 | 4.4:+87286311 | MS.gene068262:CDS |
| AGCTAGGAGGAGAACATCTA+TGG | 0.381468 | 4.4:-87283771 | None:intergenic |
| CCTTGTTCTTGGAAACTTGG+AGG | 0.385110 | 4.4:+87286402 | MS.gene068262:CDS |
| CGCGTTGATCCGTGCGGTGG+TGG | 0.389537 | 4.4:+87283892 | MS.gene068262:CDS |
| AACGGTTGGCATTATTGGGC+TGG | 0.399643 | 4.4:+87285958 | MS.gene068262:CDS |
| GAAGGTCGTTTGGCTGGAGC+TGG | 0.402499 | 4.4:+87286262 | MS.gene068262:CDS |
| ATTGTGTCTTTGCAGTTCTC+TGG | 0.411443 | 4.4:+87285932 | MS.gene068262:intron |
| ATCCGTGCGGTGGTGGGAAG+CGG | 0.412897 | 4.4:+87283899 | MS.gene068262:CDS |
| AAAGCCACTGTTAACTCCTC+TGG | 0.425165 | 4.4:+87286438 | MS.gene068262:CDS |
| CTGGTCTCTGCACTCCTTGA+AGG | 0.428194 | 4.4:+87286244 | MS.gene068262:CDS |
| CTCGAAACAATCTCCAGCTT+TGG | 0.428346 | 4.4:-87283959 | None:intergenic |
| TGACCTTGTTCTTGGAAACT+TGG | 0.428681 | 4.4:+87286399 | MS.gene068262:CDS |
| CTTAACAAGTGTAAGGAGAA+AGG | 0.448740 | 4.4:+87284010 | MS.gene068262:CDS |
| ATGCTAACTCAACAACATTT+GGG | 0.448912 | 4.4:-87286081 | None:intergenic |
| ATTATTGGGCTGGGAAGGAT+TGG | 0.452955 | 4.4:+87285968 | MS.gene068262:CDS |
| CTCCAGCCAAACGACCTTCA+AGG | 0.455291 | 4.4:-87286258 | None:intergenic |
| GGTAATCACATATGCGGAAA+AGG | 0.474537 | 4.4:-87283838 | None:intergenic |
| TTTGCAGTTCTCTGGTAAAA+CGG | 0.480038 | 4.4:+87285940 | MS.gene068262:intron |
| ACGGTTGGCATTATTGGGCT+GGG | 0.485770 | 4.4:+87285959 | MS.gene068262:CDS |
| TTAACAAGTGTAAGGAGAAA+GGG | 0.494005 | 4.4:+87284011 | MS.gene068262:CDS |
| AAACCCGTCACATCATCAAT+CGG | 0.494601 | 4.4:+87286146 | MS.gene068262:CDS |
| TATTGATGCACTACCAAAGC+TGG | 0.498698 | 4.4:+87283946 | MS.gene068262:CDS |
| TGAGTTCTTGTTCTAAGTAA+GGG | 0.499475 | 4.4:-87283802 | None:intergenic |
| CAGTTCTCTGGTAAAACGGT+TGG | 0.505237 | 4.4:+87285944 | MS.gene068262:intron |
| GATTGATCTTAACAAGTGTA+AGG | 0.511620 | 4.4:+87284003 | MS.gene068262:CDS |
| CGGGAGGTCATCAATGCACT+TGG | 0.512262 | 4.4:+87286166 | MS.gene068262:CDS |
| GTGGTGGGAAGCGGATCCTC+CGG | 0.514823 | 4.4:+87283908 | MS.gene068262:CDS |
| TTGGCATTATTGGGCTGGGA+AGG | 0.517587 | 4.4:+87285963 | MS.gene068262:CDS |
| TGTGATCGATTTGTTAGAAG+TGG | 0.519798 | 4.4:+87284127 | MS.gene068262:CDS |
| AGGAGTGCAGAGACCAGCTC+TGG | 0.522320 | 4.4:-87286238 | None:intergenic |
| CATCAATGCACTTGGTCCGA+AGG | 0.522707 | 4.4:+87286174 | MS.gene068262:CDS |
| ACATCGTCAGTCAACACATC+AGG | 0.529708 | 4.4:-87284052 | None:intergenic |
| AGTAAGGGAGTACTTGAGCT+AGG | 0.535794 | 4.4:-87283787 | None:intergenic |
| GATTTGTTAGAAGTGGAGAC+TGG | 0.538028 | 4.4:+87284134 | MS.gene068262:CDS |
| TTCCTAATTAACATCGGTCG+AGG | 0.539379 | 4.4:+87286199 | MS.gene068262:CDS |
| AACCCGTCACATCATCAATC+GGG | 0.545990 | 4.4:+87286147 | MS.gene068262:CDS |
| GCGTTGATCCGTGCGGTGGT+GGG | 0.548090 | 4.4:+87283893 | MS.gene068262:CDS |
| TAAATATAAGTTGACCACTA+AGG | 0.548484 | 4.4:+87284165 | MS.gene068262:CDS |
| ATCAATGCACTTGGTCCGAA+GGG | 0.555023 | 4.4:+87286175 | MS.gene068262:CDS |
| GCATGTTGATGAGCCAGAGC+TGG | 0.562230 | 4.4:+87286225 | MS.gene068262:CDS |
| GCCTCATGTTGGAAGCGGCA+CGG | 0.562999 | 4.4:+87286354 | MS.gene068262:CDS |
| ATGTTAATTAGGAAACCCTT+CGG | 0.565210 | 4.4:-87286190 | None:intergenic |
| GGTTTCCTCTGTAAGAGAGC+AGG | 0.567739 | 4.4:-87286128 | None:intergenic |
| GCAATTGCCAAAAGAGCTGA+AGG | 0.572482 | 4.4:+87285995 | MS.gene068262:CDS |
| TGATGCTTACACTTCTTAGG+AGG | 0.574694 | 4.4:+87284095 | MS.gene068262:CDS |
| ATTGTTTCGAGCTTCAGCGT+TGG | 0.579525 | 4.4:+87283971 | MS.gene068262:CDS |
| TCCAAGAACAAGGTCAGCCA+TGG | 0.581407 | 4.4:-87286392 | None:intergenic |
| TGTTGCCTGCTCTCTTACAG+AGG | 0.581856 | 4.4:+87286123 | MS.gene068262:CDS |
| CCTCCAAGTTTCCAAGAACA+AGG | 0.582993 | 4.4:-87286402 | None:intergenic |
| CTCCCGATTGATGATGTGAC+GGG | 0.583689 | 4.4:-87286149 | None:intergenic |
| AACAACTAGTATGTCGCAGT+TGG | 0.597542 | 4.4:-87286104 | None:intergenic |
| TTGCTGCCTCATGTTGGAAG+CGG | 0.600868 | 4.4:+87286349 | MS.gene068262:CDS |
| CTATTCTAGAACTCAAAAGC+AGG | 0.606500 | 4.4:+87286039 | MS.gene068262:CDS |
| GGTAGAAACTCGAACTGCCA+TGG | 0.612477 | 4.4:+87286375 | MS.gene068262:CDS |
| TCTCAATTCTTAACTCAACA+TGG | 0.624464 | 4.4:+87283869 | MS.gene068262:CDS |
| CCTCCCGATTGATGATGTGA+CGG | 0.624802 | 4.4:-87286150 | None:intergenic |
| AATAGCTCTTTGGGAACATG+AGG | 0.625035 | 4.4:-87286307 | None:intergenic |
| ACCGTGCCGCTTCCAACATG+AGG | 0.625427 | 4.4:-87286355 | None:intergenic |
| ATCCGCTTCCCACCACCGCA+CGG | 0.626104 | 4.4:-87283901 | None:intergenic |
| TTTGCGGGTAATCACATATG+CGG | 0.626467 | 4.4:-87283844 | None:intergenic |
| AGAAGTGGAGACTGGAAGCA+TGG | 0.626810 | 4.4:+87284142 | MS.gene068262:CDS |
| GTTGTGTTGCTGCCTCATGT+TGG | 0.642237 | 4.4:+87286343 | MS.gene068262:CDS |
| AGTCATGTAGCTTAAACCAG+AGG | 0.647732 | 4.4:-87286454 | None:intergenic |
| AAGGGAGTACTTGAGCTAGG+AGG | 0.665697 | 4.4:-87283784 | None:intergenic |
| TGGCGCGTTGATCCGTGCGG+TGG | 0.667823 | 4.4:+87283889 | MS.gene068262:CDS |
| AAGGGTTTCCTAATTAACAT+CGG | 0.671669 | 4.4:+87286193 | MS.gene068262:CDS |
| CCGTCACATCATCAATCGGG+AGG | 0.679435 | 4.4:+87286150 | MS.gene068262:CDS |
| AAGCTCAGAATCAACGCCGG+AGG | 0.690169 | 4.4:-87283924 | None:intergenic |
| AATAAGCTCAGAATCAACGC+CGG | 0.694388 | 4.4:-87283927 | None:intergenic |
| TAAACCAGAGGAGTTAACAG+TGG | 0.695714 | 4.4:-87286442 | None:intergenic |
| ACATGGCGCGTTGATCCGTG+CGG | 0.713860 | 4.4:+87283886 | MS.gene068262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAAATATTGAAAAATAAG+TGG | - | chr4.4:87285737-87285756 | None:intergenic | 15.0% |
| !! | TTCATAATATTATCAAGAAT+CGG | - | chr4.4:87284284-87284303 | None:intergenic | 15.0% |
| !!! | AAATATTTTTAGTGTAAGTT+TGG | - | chr4.4:87285283-87285302 | None:intergenic | 15.0% |
| !!! | TAAATGTTTTTGCTTAAAAA+TGG | + | chr4.4:87285652-87285671 | MS.gene068262:intron | 15.0% |
| !! | AAATGCACTAAAAATGTTAT+AGG | + | chr4.4:87284555-87284574 | MS.gene068262:intron | 20.0% |
| !! | ATATTATGAAAAAGTAGTTG+TGG | + | chr4.4:87285120-87285139 | MS.gene068262:intron | 20.0% |
| !! | TCATAATATTATCAAGAATC+GGG | - | chr4.4:87284283-87284302 | None:intergenic | 20.0% |
| !!! | ACACTAAAAATATTTCAAGT+AGG | + | chr4.4:87285288-87285307 | MS.gene068262:intron | 20.0% |
| !!! | AGGAACATTGTTTTAAATTA+TGG | + | chr4.4:87285308-87285327 | MS.gene068262:intron | 20.0% |
| !!! | ATTAATTTGTTGTTGGAAAA+TGG | - | chr4.4:87285914-87285933 | None:intergenic | 20.0% |
| !!! | CTGTAATATAAAAGTTTTAG+AGG | + | chr4.4:87285344-87285363 | MS.gene068262:intron | 20.0% |
| !!! | TTCCAAATTAAAAGTTTTAG+AGG | + | chr4.4:87284589-87284608 | MS.gene068262:intron | 20.0% |
| ! | AAAAACCATGATTAGAAAGT+TGG | - | chr4.4:87284205-87284224 | None:intergenic | 25.0% |
| ! | AAGAAAAGCAACATCAATTT+AGG | - | chr4.4:87284986-87285005 | None:intergenic | 25.0% |
| ! | AATAACCAACTTTCTAATCA+TGG | + | chr4.4:87284197-87284216 | MS.gene068262:intron | 25.0% |
| ! | ATGATCTAACGTTTATAGAT+AGG | + | chr4.4:87284696-87284715 | MS.gene068262:intron | 25.0% |
| ! | ATTATGTTTCAGCAAATTGA+AGG | + | chr4.4:87284744-87284763 | MS.gene068262:intron | 25.0% |
| ! | TAGAGTTAAGAAAAAATGCT+TGG | + | chr4.4:87284887-87284906 | MS.gene068262:intron | 25.0% |
| ! | TTCATACTGCACATTAAAAT+CGG | + | chr4.4:87285853-87285872 | MS.gene068262:intron | 25.0% |
| ! | TTTGATATTGTGAAGAATTG+TGG | + | chr4.4:87285013-87285032 | MS.gene068262:intron | 25.0% |
| !! | GATTAGAAAGTTGGTTATTA+TGG | - | chr4.4:87284196-87284215 | None:intergenic | 25.0% |
| !! | GTTAAGAATTGAGATTTTTG+CGG | - | chr4.4:87283863-87283882 | None:intergenic | 25.0% |
| !! | TAAATATAAGTTGACCACTA+AGG | + | chr4.4:87284165-87284184 | MS.gene068262:CDS | 25.0% |
| !! | TAATCTTACCATCTGATTTT+TGG | + | chr4.4:87284811-87284830 | MS.gene068262:intron | 25.0% |
| !! | TTAAGAATTGAGATTTTTGC+GGG | - | chr4.4:87283862-87283881 | None:intergenic | 25.0% |
| !!! | ACATTTTTAGTGCATTTTTG+TGG | - | chr4.4:87284552-87284571 | None:intergenic | 25.0% |
| !!! | AGACACAATTAATTTGTTGT+TGG | - | chr4.4:87285921-87285940 | None:intergenic | 25.0% |
| !!! | ATACTTTAGCTTTTGCTTTT+TGG | - | chr4.4:87284949-87284968 | None:intergenic | 25.0% |
| !!! | CTGTAGTTTTAGCAAAATTA+TGG | + | chr4.4:87285222-87285241 | MS.gene068262:intron | 25.0% |
| !!! | GACCTCTAAAACTTTTAATT+TGG | - | chr4.4:87284594-87284613 | None:intergenic | 25.0% |
| !!! | TGCTTTTTGGTGTATATAAA+AGG | - | chr4.4:87284936-87284955 | None:intergenic | 25.0% |
| !!! | TTATTATGGTTTTACCTTAG+TGG | - | chr4.4:87284182-87284201 | None:intergenic | 25.0% |
| AAGGGTTTCCTAATTAACAT+CGG | + | chr4.4:87286193-87286212 | MS.gene068262:CDS | 30.0% | |
| AGACTTGAAACAAAAAGCAA+TGG | - | chr4.4:87285062-87285081 | None:intergenic | 30.0% | |
| AGTTAAGAAAAAATGCTTGG+TGG | + | chr4.4:87284890-87284909 | MS.gene068262:intron | 30.0% | |
| ATAACTTCCATTTCCATTAG+AGG | - | chr4.4:87285554-87285573 | None:intergenic | 30.0% | |
| ATGCTAACTCAACAACATTT+GGG | - | chr4.4:87286084-87286103 | None:intergenic | 30.0% | |
| ATGTTAATTAGGAAACCCTT+CGG | - | chr4.4:87286193-87286212 | None:intergenic | 30.0% | |
| CAATGATGTATCATGTTGTA+AGG | + | chr4.4:87285803-87285822 | MS.gene068262:intron | 30.0% | |
| CTAGTAGTTTGACAAAGTTA+TGG | + | chr4.4:87284307-87284326 | MS.gene068262:intron | 30.0% | |
| CTTAACTCTAATTCTGTCAT+TGG | - | chr4.4:87284877-87284896 | None:intergenic | 30.0% | |
| CTTTATATTGTGGCAAATAG+CGG | - | chr4.4:87285412-87285431 | None:intergenic | 30.0% | |
| GATTGATCTTAACAAGTGTA+AGG | + | chr4.4:87284003-87284022 | MS.gene068262:CDS | 30.0% | |
| GCACTAAAAATGTTATAGGT+AGG | + | chr4.4:87284559-87284578 | MS.gene068262:intron | 30.0% | |
| GTAAACTAAATGTGTATGTG+TGG | + | chr4.4:87285142-87285161 | MS.gene068262:intron | 30.0% | |
| GTGAAAATCAAGGTAGTTTA+TGG | + | chr4.4:87284503-87284522 | MS.gene068262:intron | 30.0% | |
| GTTTAGCATTACTGAATAGA+AGG | + | chr4.4:87284786-87284805 | MS.gene068262:intron | 30.0% | |
| TCTCAATTCTTAACTCAACA+TGG | + | chr4.4:87283869-87283888 | MS.gene068262:CDS | 30.0% | |
| TGTGAGTTTCAACAAAATCA+CGG | - | chr4.4:87284467-87284486 | None:intergenic | 30.0% | |
| TTAACAAGTGTAAGGAGAAA+GGG | + | chr4.4:87284011-87284030 | MS.gene068262:CDS | 30.0% | |
| TTTGCCACAATATAAAGGTT+CGG | + | chr4.4:87285415-87285434 | MS.gene068262:intron | 30.0% | |
| ! | AAAACTACAGTTTGAAGTCT+CGG | - | chr4.4:87285212-87285231 | None:intergenic | 30.0% |
| ! | ATTAAAACCTTCAGCTCTTT+TGG | - | chr4.4:87286005-87286024 | None:intergenic | 30.0% |
| ! | TGAGTTCTTGTTCTAAGTAA+GGG | - | chr4.4:87283805-87283824 | None:intergenic | 30.0% |
| ! | TGTAGCTTTTGTGAAAATCA+AGG | + | chr4.4:87284493-87284512 | MS.gene068262:intron | 30.0% |
| ! | TTGAGTTCTTGTTCTAAGTA+AGG | - | chr4.4:87283806-87283825 | None:intergenic | 30.0% |
| ! | TTTGGGTAGTACTTGTATTT+TGG | - | chr4.4:87286067-87286086 | None:intergenic | 30.0% |
| !! | ATTCGTTAGCTTTCAAGATA+CGG | + | chr4.4:87285757-87285776 | MS.gene068262:intron | 30.0% |
| !!! | ACTTTTAGGATCCTTTATCT+CGG | + | chr4.4:87285451-87285470 | MS.gene068262:intron | 30.0% |
| !!! | CAGCATGTGTGTTTTAATAT+TGG | - | chr4.4:87284398-87284417 | None:intergenic | 30.0% |
| !!! | TGTTTTGACAAAAGCTACAA+TGG | - | chr4.4:87284363-87284382 | None:intergenic | 30.0% |
| !!! | TTAAAAGTTTTAGAGGTCTC+TGG | + | chr4.4:87284596-87284615 | MS.gene068262:intron | 30.0% |
| !!! | TTGATGTTGCTTTTCTTTTG+CGG | + | chr4.4:87284989-87285008 | MS.gene068262:intron | 30.0% |
| AACCATGATGAAATGAACAG+TGG | - | chr4.4:87284653-87284672 | None:intergenic | 35.0% | |
| AATATCTTCTGGACCTCTAA+TGG | + | chr4.4:87285538-87285557 | MS.gene068262:intron | 35.0% | |
| ACAAAAGCTACAATGGCTTT+GGG | - | chr4.4:87284356-87284375 | None:intergenic | 35.0% | |
| ATCAGAGTGTGAATATCTTC+TGG | + | chr4.4:87285527-87285546 | MS.gene068262:intron | 35.0% | |
| ATGACAAGAAACCGAGATAA+AGG | - | chr4.4:87285465-87285484 | None:intergenic | 35.0% | |
| ATGTTCCCAAAGAGCTATTT+GGG | + | chr4.4:87286311-87286330 | MS.gene068262:CDS | 35.0% | |
| CAATTTAGGAGCTTGGTTAT+AGG | - | chr4.4:87284972-87284991 | None:intergenic | 35.0% | |
| CGCTATTTGCCACAATATAA+AGG | + | chr4.4:87285410-87285429 | MS.gene068262:intron | 35.0% | |
| CTTAACAAGTGTAAGGAGAA+AGG | + | chr4.4:87284010-87284029 | MS.gene068262:CDS | 35.0% | |
| GATGCTAACTCAACAACATT+TGG | - | chr4.4:87286085-87286104 | None:intergenic | 35.0% | |
| GTAAAACGGTTGGCATTATT+GGG | + | chr4.4:87285954-87285973 | MS.gene068262:CDS | 35.0% | |
| GTAGTTTGACAAAGTTATGG+TGG | + | chr4.4:87284310-87284329 | MS.gene068262:intron | 35.0% | |
| GTTTGATGCTTACACTTCTT+AGG | + | chr4.4:87284092-87284111 | MS.gene068262:CDS | 35.0% | |
| TACTCCGAACCTTTATATTG+TGG | - | chr4.4:87285422-87285441 | None:intergenic | 35.0% | |
| TATGAGTGCCAAAAATCAGA+TGG | - | chr4.4:87284822-87284841 | None:intergenic | 35.0% | |
| TATTATCAAGAATCGGGACA+CGG | - | chr4.4:87284277-87284296 | None:intergenic | 35.0% | |
| TCAGTAATGCTAAACCATAC+CGG | - | chr4.4:87284781-87284800 | None:intergenic | 35.0% | |
| TGTTGAGTTAGGCAAAATCA+AGG | + | chr4.4:87285170-87285189 | MS.gene068262:intron | 35.0% | |
| TTCCACTGTTCATTTCATCA+TGG | + | chr4.4:87284648-87284667 | MS.gene068262:intron | 35.0% | |
| TTGGGGTTTCAACAAAATCA+CGG | - | chr4.4:87284338-87284357 | None:intergenic | 35.0% | |
| TTTGCAGTTCTCTGGTAAAA+CGG | + | chr4.4:87285940-87285959 | MS.gene068262:intron | 35.0% | |
| ! | ACACATGCTGATTGTATGTT+GGG | + | chr4.4:87284408-87284427 | MS.gene068262:intron | 35.0% |
| ! | AGCTTTTGTCAAAACAGTAG+TGG | + | chr4.4:87284367-87284386 | MS.gene068262:intron | 35.0% |
| ! | GAGTATAGTAGTGCACTTTT+AGG | + | chr4.4:87285437-87285456 | MS.gene068262:intron | 35.0% |
| ! | TTAGTGCATTTTTGTGGTGA+CGG | - | chr4.4:87284546-87284565 | None:intergenic | 35.0% |
| !! | AATGCTTGGTGGTTTGTTAT+AGG | + | chr4.4:87284901-87284920 | MS.gene068262:intron | 35.0% |
| !! | ATGCTTGGTGGTTTGTTATA+GGG | + | chr4.4:87284902-87284921 | MS.gene068262:intron | 35.0% |
| !! | ATTTGTTGTTGGAAAATGGC+AGG | - | chr4.4:87285910-87285929 | None:intergenic | 35.0% |
| !! | CTATTCTAGAACTCAAAAGC+AGG | + | chr4.4:87286039-87286058 | MS.gene068262:CDS | 35.0% |
| !! | TGTGATCGATTTGTTAGAAG+TGG | + | chr4.4:87284127-87284146 | MS.gene068262:CDS | 35.0% |
| !! | TTTGTTGTTGGAAAATGGCA+GGG | - | chr4.4:87285909-87285928 | None:intergenic | 35.0% |
| !!! | AGTTTTAGAGGTAATCACAG+CGG | + | chr4.4:87285356-87285375 | MS.gene068262:intron | 35.0% |
| AAACCCGTCACATCATCAAT+CGG | + | chr4.4:87286146-87286165 | MS.gene068262:CDS | 40.0% | |
| AACAACTAGTATGTCGCAGT+TGG | - | chr4.4:87286107-87286126 | None:intergenic | 40.0% | |
| AATAAGCTCAGAATCAACGC+CGG | - | chr4.4:87283930-87283949 | None:intergenic | 40.0% | |
| ATTGAAGGCCAGTCATTAAC+CGG | + | chr4.4:87284759-87284778 | MS.gene068262:intron | 40.0% | |
| ATTGTGTCTTTGCAGTTCTC+TGG | + | chr4.4:87285932-87285951 | MS.gene068262:intron | 40.0% | |
| CATGTTCCCAAAGAGCTATT+TGG | + | chr4.4:87286310-87286329 | MS.gene068262:CDS | 40.0% | |
| GACAAAAGCTACAATGGCTT+TGG | - | chr4.4:87284357-87284376 | None:intergenic | 40.0% | |
| GCAACATCAATTTAGGAGCT+TGG | - | chr4.4:87284979-87284998 | None:intergenic | 40.0% | |
| GGTAAAACGGTTGGCATTAT+TGG | + | chr4.4:87285953-87285972 | MS.gene068262:CDS | 40.0% | |
| GGTAATCACATATGCGGAAA+AGG | - | chr4.4:87283841-87283860 | None:intergenic | 40.0% | |
| GTTTGGATTGAAAGCGAGAA+TGG | - | chr4.4:87285266-87285285 | None:intergenic | 40.0% | |
| TAAACCAGAGGAGTTAACAG+TGG | - | chr4.4:87286445-87286464 | None:intergenic | 40.0% | |
| TACCTCGACCGATGTTAATT+AGG | - | chr4.4:87286204-87286223 | None:intergenic | 40.0% | |
| TATTGATGCACTACCAAAGC+TGG | + | chr4.4:87283946-87283965 | MS.gene068262:CDS | 40.0% | |
| TCTAGCCCAAATAGCTCTTT+GGG | - | chr4.4:87286319-87286338 | None:intergenic | 40.0% | |
| TGACCTTGTTCTTGGAAACT+TGG | + | chr4.4:87286399-87286418 | MS.gene068262:CDS | 40.0% | |
| TGAGTTAGGCAAAATCAAGG+CGG | + | chr4.4:87285173-87285192 | MS.gene068262:intron | 40.0% | |
| TGATGCTTACACTTCTTAGG+AGG | + | chr4.4:87284095-87284114 | MS.gene068262:CDS | 40.0% | |
| TGATTGTATGTTGGGATTGG+CGG | + | chr4.4:87284416-87284435 | MS.gene068262:intron | 40.0% | |
| TTCCTAATTAACATCGGTCG+AGG | + | chr4.4:87286199-87286218 | MS.gene068262:CDS | 40.0% | |
| TTCTAGCCCAAATAGCTCTT+TGG | - | chr4.4:87286320-87286339 | None:intergenic | 40.0% | |
| TTCTGGACCTCTAATGGAAA+TGG | + | chr4.4:87285544-87285563 | MS.gene068262:intron | 40.0% | |
| TTTGCGGGTAATCACATATG+CGG | - | chr4.4:87283847-87283866 | None:intergenic | 40.0% | |
| ! | AAACCATACCGGTTAATGAC+TGG | - | chr4.4:87284770-87284789 | None:intergenic | 40.0% |
| ! | AACTTGGAGGCTCATTTTCT+TGG | + | chr4.4:87286415-87286434 | MS.gene068262:CDS | 40.0% |
| ! | AATAGCTCTTTGGGAACATG+AGG | - | chr4.4:87286310-87286329 | None:intergenic | 40.0% |
| ! | CAAAAGCTACAATGGCTTTG+GGG | - | chr4.4:87284355-87284374 | None:intergenic | 40.0% |
| ! | CACACATGCTGATTGTATGT+TGG | + | chr4.4:87284407-87284426 | MS.gene068262:intron | 40.0% |
| ! | GTGTGGATTGATGTTGAGTT+AGG | + | chr4.4:87285159-87285178 | MS.gene068262:intron | 40.0% |
| ! | TGCTGATTGTATGTTGGGAT+TGG | + | chr4.4:87284413-87284432 | MS.gene068262:intron | 40.0% |
| ! | TTTAAGCCTTGTCGTGATCA+CGG | + | chr4.4:87284228-87284247 | MS.gene068262:intron | 40.0% |
| !! | GATGTTGCTGATTTGGCTAT+TGG | + | chr4.4:87284070-87284089 | MS.gene068262:CDS | 40.0% |
| !! | GATTTGTTAGAAGTGGAGAC+TGG | + | chr4.4:87284134-87284153 | MS.gene068262:CDS | 40.0% |
| !! | TTGGTGGTTTGTTATAGGGA+TGG | + | chr4.4:87284906-87284925 | MS.gene068262:intron | 40.0% |
| !!! | AGTTTTAGAGGTCTCTGGAA+TGG | + | chr4.4:87284601-87284620 | MS.gene068262:intron | 40.0% |
| !!! | TTTTGTGGTGACGGTAAGAT+TGG | - | chr4.4:87284537-87284556 | None:intergenic | 40.0% |
| AAAGCCACTGTTAACTCCTC+TGG | + | chr4.4:87286438-87286457 | MS.gene068262:CDS | 45.0% | |
| AACCCGTCACATCATCAATC+GGG | + | chr4.4:87286147-87286166 | MS.gene068262:CDS | 45.0% | |
| ACAAACCAAGTCACACAGCT+TGG | - | chr4.4:87285633-87285652 | None:intergenic | 45.0% | |
| ACATCGTCAGTCAACACATC+AGG | - | chr4.4:87284055-87284074 | None:intergenic | 45.0% | |
| AGCTAGGAGGAGAACATCTA+TGG | - | chr4.4:87283774-87283793 | None:intergenic | 45.0% | |
| ATCAATGCACTTGGTCCGAA+GGG | + | chr4.4:87286175-87286194 | MS.gene068262:CDS | 45.0% | |
| ATTGTTTCGAGCTTCAGCGT+TGG | + | chr4.4:87283971-87283990 | MS.gene068262:CDS | 45.0% | |
| CAGTTCTCTGGTAAAACGGT+TGG | + | chr4.4:87285944-87285963 | MS.gene068262:intron | 45.0% | |
| CATGTGTACATCCCAGAAAC+AGG | + | chr4.4:87285607-87285626 | MS.gene068262:intron | 45.0% | |
| CCTCCAAGTTTCCAAGAACA+AGG | - | chr4.4:87286405-87286424 | None:intergenic | 45.0% | |
| CCTTGTTCTTGGAAACTTGG+AGG | + | chr4.4:87286402-87286421 | MS.gene068262:CDS | 45.0% | |
| CTCGAAACAATCTCCAGCTT+TGG | - | chr4.4:87283962-87283981 | None:intergenic | 45.0% | |
| GATTGGCGGTGAGTTTAACA+AGG | + | chr4.4:87284430-87284449 | MS.gene068262:intron | 45.0% | |
| GCAATTGCCAAAAGAGCTGA+AGG | + | chr4.4:87285995-87286014 | MS.gene068262:CDS | 45.0% | |
| TCGTCGTCTTGTCATGATCA+TGG | + | chr4.4:87284251-87284270 | MS.gene068262:intron | 45.0% | |
| TGGATTGAAAGCGAGAATGG+TGG | - | chr4.4:87285263-87285282 | None:intergenic | 45.0% | |
| TTGGCACTCATAGTGTCGTA+TGG | + | chr4.4:87284830-87284849 | MS.gene068262:intron | 45.0% | |
| ! | ATTATTGGGCTGGGAAGGAT+TGG | + | chr4.4:87285968-87285987 | MS.gene068262:CDS | 45.0% |
| ! | GACTGACGATGTTGCTGATT+TGG | + | chr4.4:87284063-87284082 | MS.gene068262:CDS | 45.0% |
| !! | AGTAAGGGAGTACTTGAGCT+AGG | - | chr4.4:87283790-87283809 | None:intergenic | 45.0% |
| AACGGTTGGCATTATTGGGC+TGG | + | chr4.4:87285958-87285977 | MS.gene068262:CDS | 50.0% | |
| ACGGTTGGCATTATTGGGCT+GGG | + | chr4.4:87285959-87285978 | MS.gene068262:CDS | 50.0% | |
| AGAAGTGGAGACTGGAAGCA+TGG | + | chr4.4:87284142-87284161 | MS.gene068262:CDS | 50.0% | |
| AGGCCAGTCATTAACCGGTA+TGG | + | chr4.4:87284764-87284783 | MS.gene068262:intron | 50.0% | |
| CATCAATGCACTTGGTCCGA+AGG | + | chr4.4:87286174-87286193 | MS.gene068262:CDS | 50.0% | |
| GGTAGAAACTCGAACTGCCA+TGG | + | chr4.4:87286375-87286394 | MS.gene068262:CDS | 50.0% | |
| GGTTTCCTCTGTAAGAGAGC+AGG | - | chr4.4:87286131-87286150 | None:intergenic | 50.0% | |
| GTTGGAAAATGGCAGGGAAG+AGG | - | chr4.4:87285903-87285922 | None:intergenic | 50.0% | |
| TCCAAGAACAAGGTCAGCCA+TGG | - | chr4.4:87286395-87286414 | None:intergenic | 50.0% | |
| TGCACTCCTTGAAGGTCGTT+TGG | + | chr4.4:87286252-87286271 | MS.gene068262:CDS | 50.0% | |
| TGTTGCCTGCTCTCTTACAG+AGG | + | chr4.4:87286123-87286142 | MS.gene068262:CDS | 50.0% | |
| TTGCTGCCTCATGTTGGAAG+CGG | + | chr4.4:87286349-87286368 | MS.gene068262:CDS | 50.0% | |
| ! | ACACAGCTTGGCCTGTTTCT+GGG | - | chr4.4:87285621-87285640 | None:intergenic | 50.0% |
| ! | GTTGTGTTGCTGCCTCATGT+TGG | + | chr4.4:87286343-87286362 | MS.gene068262:CDS | 50.0% |
| ! | TTGGCATTATTGGGCTGGGA+AGG | + | chr4.4:87285963-87285982 | MS.gene068262:CDS | 50.0% |
| !! | AAGGGAGTACTTGAGCTAGG+AGG | - | chr4.4:87283787-87283806 | None:intergenic | 50.0% |
| !! | CCTCCCGATTGATGATGTGA+CGG | - | chr4.4:87286153-87286172 | None:intergenic | 50.0% |
| !! | CTCCCGATTGATGATGTGAC+GGG | - | chr4.4:87286152-87286171 | None:intergenic | 50.0% |
| AAGCTCAGAATCAACGCCGG+AGG | - | chr4.4:87283927-87283946 | None:intergenic | 55.0% | |
| ACAGGCCAAGCTGTGTGACT+TGG | + | chr4.4:87285625-87285644 | MS.gene068262:intron | 55.0% | |
| CACACAGCTTGGCCTGTTTC+TGG | - | chr4.4:87285622-87285641 | None:intergenic | 55.0% | |
| CCGTCACATCATCAATCGGG+AGG | + | chr4.4:87286150-87286169 | MS.gene068262:CDS | 55.0% | |
| CGGGAGGTCATCAATGCACT+TGG | + | chr4.4:87286166-87286185 | MS.gene068262:CDS | 55.0% | |
| CTCCAGCCAAACGACCTTCA+AGG | - | chr4.4:87286261-87286280 | None:intergenic | 55.0% | |
| CTCCTTGAAGGTCGTTTGGC+TGG | + | chr4.4:87286256-87286275 | MS.gene068262:CDS | 55.0% | |
| CTGGTCTCTGCACTCCTTGA+AGG | + | chr4.4:87286244-87286263 | MS.gene068262:CDS | 55.0% | |
| GCCATGGCTGACCTTGTTCT+TGG | + | chr4.4:87286391-87286410 | MS.gene068262:CDS | 55.0% | |
| GGTAATCACAGCGGCATCAC+AGG | + | chr4.4:87285365-87285384 | MS.gene068262:intron | 55.0% | |
| ! | GCATGTTGATGAGCCAGAGC+TGG | + | chr4.4:87286225-87286244 | MS.gene068262:CDS | 55.0% |
| CGACGACCGTGATCACGACA+AGG | - | chr4.4:87284237-87284256 | None:intergenic | 60.0% | |
| GAAGGTCGTTTGGCTGGAGC+TGG | + | chr4.4:87286262-87286281 | MS.gene068262:CDS | 60.0% | |
| GCCTCATGTTGGAAGCGGCA+CGG | + | chr4.4:87286354-87286373 | MS.gene068262:CDS | 60.0% | |
| ! | ACATGGCGCGTTGATCCGTG+CGG | + | chr4.4:87283886-87283905 | MS.gene068262:CDS | 60.0% |
| ! | AGGAGTGCAGAGACCAGCTC+TGG | - | chr4.4:87286241-87286260 | None:intergenic | 60.0% |
| !! | ACCGTGCCGCTTCCAACATG+AGG | - | chr4.4:87286358-87286377 | None:intergenic | 60.0% |
| ATCCGCTTCCCACCACCGCA+CGG | - | chr4.4:87283904-87283923 | None:intergenic | 65.0% | |
| ! | GCGTTGATCCGTGCGGTGGT+GGG | + | chr4.4:87283893-87283912 | MS.gene068262:CDS | 65.0% |
| ! | GTGGTGGGAAGCGGATCCTC+CGG | + | chr4.4:87283908-87283927 | MS.gene068262:CDS | 65.0% |
| !! | ATCCGTGCGGTGGTGGGAAG+CGG | + | chr4.4:87283899-87283918 | MS.gene068262:CDS | 65.0% |
| ! | CGCGTTGATCCGTGCGGTGG+TGG | + | chr4.4:87283892-87283911 | MS.gene068262:CDS | 70.0% |
| ! | TGGCGCGTTGATCCGTGCGG+TGG | + | chr4.4:87283889-87283908 | MS.gene068262:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 87283764 | 87286465 | 87283764 | ID=MS.gene068262 |
| chr4.4 | mRNA | 87283764 | 87286465 | 87283764 | ID=MS.gene068262.t1;Parent=MS.gene068262 |
| chr4.4 | exon | 87283764 | 87284186 | 87283764 | ID=MS.gene068262.t1.exon1;Parent=MS.gene068262.t1 |
| chr4.4 | CDS | 87283764 | 87284186 | 87283764 | ID=cds.MS.gene068262.t1;Parent=MS.gene068262.t1 |
| chr4.4 | exon | 87285947 | 87286465 | 87285947 | ID=MS.gene068262.t1.exon2;Parent=MS.gene068262.t1 |
| chr4.4 | CDS | 87285947 | 87286465 | 87285947 | ID=cds.MS.gene068262.t1;Parent=MS.gene068262.t1 |
| Gene Sequence |
| Protein sequence |
