Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24945.t1 | XP_003604495.2 | 93 | 313 | 22 | 0 | 1 | 313 | 343 | 655 | 2.80E-162 | 581.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24945.t1 | Q65CJ7 | 72.2 | 313 | 87 | 0 | 1 | 313 | 1 | 313 | 1.4e-125 | 450.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24945.t1 | G7JJF6 | 93.0 | 313 | 22 | 0 | 1 | 313 | 1 | 313 | 2.0e-162 | 581.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24945 | MS.gene87842 | PPI |
| MS.gene24945 | MS.gene37515 | PPI |
| MS.gene24945 | MS.gene37513 | PPI |
| MS.gene24945 | MS.gene019402 | PPI |
| MS.gene24945 | MS.gene23624 | PPI |
| MS.gene74946 | MS.gene24945 | PPI |
| MS.gene24945 | MS.gene019404 | PPI |
| MS.gene24945 | MS.gene76198 | PPI |
| MS.gene029300 | MS.gene24945 | PPI |
| MS.gene23623 | MS.gene24945 | PPI |
| MS.gene24945 | MS.gene37512 | PPI |
| MS.gene019406 | MS.gene24945 | PPI |
| MS.gene24945 | MS.gene37508 | PPI |
| MS.gene24945 | MS.gene87848 | PPI |
| MS.gene24945 | MS.gene065032 | PPI |
| MS.gene24945 | MS.gene87846 | PPI |
| MS.gene24945 | MS.gene019405 | PPI |
| MS.gene23633 | MS.gene24945 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24945.t1 | MTR_4g013090 | 92.971 | 313 | 22 | 0 | 1 | 313 | 1 | 313 | 0.0 | 591 |
| MS.gene24945.t1 | MTR_4g013100 | 87.261 | 314 | 39 | 1 | 1 | 313 | 1 | 314 | 0.0 | 555 |
| MS.gene24945.t1 | MTR_4g012960 | 86.901 | 313 | 38 | 1 | 1 | 313 | 1 | 310 | 0.0 | 554 |
| MS.gene24945.t1 | MTR_4g013135 | 84.665 | 313 | 48 | 0 | 1 | 313 | 1 | 313 | 0.0 | 501 |
| MS.gene24945.t1 | MTR_2g101840 | 61.465 | 314 | 120 | 1 | 1 | 313 | 1 | 314 | 9.95e-129 | 370 |
| MS.gene24945.t1 | MTR_8g033390 | 45.263 | 285 | 145 | 3 | 37 | 313 | 42 | 323 | 2.63e-88 | 267 |
| MS.gene24945.t1 | MTR_8g033400 | 42.958 | 284 | 152 | 3 | 37 | 313 | 53 | 333 | 3.80e-81 | 249 |
| MS.gene24945.t1 | MTR_8g033410 | 40.717 | 307 | 171 | 4 | 15 | 313 | 23 | 326 | 2.92e-80 | 246 |
| MS.gene24945.t1 | MTR_7g075830 | 42.222 | 270 | 141 | 4 | 57 | 312 | 46 | 314 | 1.87e-65 | 208 |
| MS.gene24945.t1 | MTR_4g013040 | 75.949 | 79 | 19 | 0 | 65 | 143 | 4 | 82 | 4.12e-36 | 129 |
| MS.gene24945.t1 | MTR_1g112510 | 32.632 | 285 | 166 | 6 | 49 | 308 | 66 | 349 | 1.30e-32 | 124 |
| MS.gene24945.t1 | MTR_1g107480 | 26.962 | 293 | 204 | 5 | 30 | 313 | 80 | 371 | 2.77e-27 | 112 |
| MS.gene24945.t1 | MTR_4g005880 | 28.346 | 254 | 173 | 4 | 68 | 313 | 152 | 404 | 3.31e-27 | 112 |
| MS.gene24945.t1 | MTR_3g005970 | 28.309 | 272 | 172 | 6 | 57 | 308 | 107 | 375 | 3.42e-24 | 101 |
| MS.gene24945.t1 | MTR_6g007170 | 29.008 | 262 | 169 | 5 | 57 | 306 | 111 | 367 | 1.56e-23 | 99.8 |
| MS.gene24945.t1 | MTR_7g078990 | 26.068 | 234 | 162 | 4 | 81 | 304 | 88 | 320 | 5.04e-18 | 84.7 |
| MS.gene24945.t1 | MTR_6g007175 | 26.070 | 257 | 164 | 5 | 57 | 306 | 80 | 317 | 1.04e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24945.t1 | AT1G79870 | 71.885 | 313 | 88 | 0 | 1 | 313 | 1 | 313 | 2.78e-158 | 444 |
| MS.gene24945.t1 | AT1G79870 | 67.412 | 313 | 83 | 1 | 1 | 313 | 1 | 294 | 1.12e-141 | 402 |
| MS.gene24945.t1 | AT1G12550 | 49.505 | 303 | 150 | 2 | 13 | 312 | 18 | 320 | 1.37e-99 | 296 |
| MS.gene24945.t1 | AT2G45630 | 44.086 | 279 | 154 | 2 | 37 | 313 | 60 | 338 | 3.20e-81 | 249 |
| MS.gene24945.t1 | AT1G17745 | 28.283 | 297 | 199 | 5 | 30 | 313 | 107 | 402 | 5.49e-31 | 122 |
| MS.gene24945.t1 | AT4G34200 | 28.328 | 293 | 200 | 5 | 30 | 313 | 86 | 377 | 2.38e-30 | 120 |
| MS.gene24945.t1 | AT1G68010 | 31.660 | 259 | 155 | 3 | 72 | 308 | 91 | 349 | 1.16e-29 | 116 |
| MS.gene24945.t1 | AT1G68010 | 32.000 | 250 | 148 | 3 | 72 | 299 | 91 | 340 | 4.48e-29 | 114 |
| MS.gene24945.t1 | AT1G68010 | 31.538 | 260 | 155 | 4 | 72 | 308 | 91 | 350 | 4.85e-28 | 112 |
| MS.gene24945.t1 | AT3G19480 | 29.804 | 255 | 168 | 6 | 68 | 313 | 110 | 362 | 7.15e-27 | 110 |
| MS.gene24945.t1 | AT1G72190 | 28.731 | 268 | 143 | 6 | 57 | 295 | 105 | 353 | 1.95e-25 | 105 |
| MS.gene24945.t1 | AT1G17745 | 26.006 | 323 | 200 | 7 | 30 | 313 | 107 | 429 | 3.39e-25 | 106 |
| MS.gene24945.t1 | AT5G14780 | 28.395 | 243 | 165 | 4 | 76 | 310 | 114 | 355 | 5.60e-24 | 100 |
| MS.gene24945.t1 | AT5G14780 | 28.244 | 262 | 179 | 4 | 57 | 310 | 83 | 343 | 5.62e-24 | 100 |
| MS.gene24945.t1 | AT5G14780 | 28.244 | 262 | 179 | 4 | 57 | 310 | 109 | 369 | 7.94e-24 | 100 |
| MS.gene24945.t1 | AT5G28310 | 33.918 | 171 | 63 | 4 | 143 | 313 | 113 | 233 | 1.36e-19 | 86.3 |
| MS.gene24945.t1 | AT2G45630 | 38.679 | 106 | 64 | 1 | 37 | 141 | 60 | 165 | 1.23e-18 | 82.4 |
| MS.gene24945.t1 | AT1G01510 | 24.473 | 237 | 166 | 4 | 81 | 304 | 96 | 332 | 1.51e-15 | 77.4 |
Find 91 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTCGACCAATGTTAATT+AGG | 0.280212 | 4.1:-82958549 | None:intergenic |
| TGCATTGCTTGATGGTCGTT+TGG | 0.281347 | 4.1:+82958600 | MS.gene24945:CDS |
| GCCATGGCTGACCTTGTTCT+TGG | 0.291981 | 4.1:+82958739 | MS.gene24945:CDS |
| GGTTGATGCTTACACTTCTT+AGG | 0.295369 | 4.1:+82956831 | MS.gene24945:CDS |
| GACTGACGATGTTGCTGATT+TGG | 0.318415 | 4.1:+82956802 | MS.gene24945:CDS |
| GGGAAAACCGTTGGCATTGT+TGG | 0.320417 | 4.1:+82958301 | MS.gene24945:CDS |
| GATGTTGCTGATTTGGCTAT+TGG | 0.325755 | 4.1:+82956809 | MS.gene24945:CDS |
| ATTGTTGGGCTGGGCAGGAT+TGG | 0.340496 | 4.1:+82958316 | MS.gene24945:CDS |
| ATTGCGTCTTTGCAGTTCTC+TGG | 0.344170 | 4.1:+82958280 | MS.gene24945:intron |
| AACCGTTGGCATTGTTGGGC+TGG | 0.352529 | 4.1:+82958306 | MS.gene24945:CDS |
| ACAGTGGCTTTCCAAGGAAA+TGG | 0.361820 | 4.1:-82958774 | None:intergenic |
| ATGTTGCTGATTTGGCTATT+GGG | 0.367912 | 4.1:+82956810 | MS.gene24945:CDS |
| TTGAGTTCTTGTTCTAAGTA+AGG | 0.368394 | 4.1:-82956542 | None:intergenic |
| TCTAGGGAAAGCAGCTCTTC+GGG | 0.386346 | 4.1:-82958664 | None:intergenic |
| CTGGTCTCTGCATTGCTTGA+TGG | 0.387204 | 4.1:+82958592 | MS.gene24945:CDS |
| CCTTGTTCTTGGAAACTTGG+AGG | 0.390337 | 4.1:+82958750 | MS.gene24945:CDS |
| TTGGCATTGTTGGGCTGGGC+AGG | 0.396717 | 4.1:+82958311 | MS.gene24945:CDS |
| TTCTAGGGAAAGCAGCTCTT+CGG | 0.399513 | 4.1:-82958665 | None:intergenic |
| ATTAAAACCTTCAGCTCTCT+TGG | 0.401991 | 4.1:-82958350 | None:intergenic |
| GCATTGCTTGATGGTCGTTT+GGG | 0.402915 | 4.1:+82958601 | MS.gene24945:CDS |
| AGCTACGAGGAGAACATCTA+TGG | 0.408821 | 4.1:-82956510 | None:intergenic |
| GATGGTCGTTTGGGTGGAGC+TGG | 0.411075 | 4.1:+82958610 | MS.gene24945:CDS |
| AACTTGGAGGCCCATTTCCT+TGG | 0.411135 | 4.1:+82958763 | MS.gene24945:CDS |
| ATCCGTGCGGTGGTGGGAAG+CGG | 0.412897 | 4.1:+82956638 | MS.gene24945:CDS |
| TGACCTTGTTCTTGGAAACT+TGG | 0.428681 | 4.1:+82958747 | MS.gene24945:CDS |
| CGTGTTGATCCGTGCGGTGG+TGG | 0.435939 | 4.1:+82956631 | MS.gene24945:CDS |
| CTCGAAACAATCTCCAGGTT+TGG | 0.438678 | 4.1:-82956698 | None:intergenic |
| GGAAAACCGTTGGCATTGTT+GGG | 0.441155 | 4.1:+82958302 | MS.gene24945:CDS |
| ACCGTTGGCATTGTTGGGCT+GGG | 0.444122 | 4.1:+82958307 | MS.gene24945:CDS |
| CTTAACAAGTGTAAGGAGAA+AGG | 0.448740 | 4.1:+82956749 | MS.gene24945:CDS |
| AGCATCCAACTGCGACATAC+TGG | 0.457202 | 4.1:+82958447 | MS.gene24945:CDS |
| CAGTGGCTTTCCAAGGAAAT+GGG | 0.458174 | 4.1:-82958773 | None:intergenic |
| AAACCCGTCACATCATCAAC+CGG | 0.461012 | 4.1:+82958494 | MS.gene24945:CDS |
| AAAGCCACTGTTAACTCCCT+TGG | 0.464385 | 4.1:+82958786 | MS.gene24945:CDS |
| TTGCGTCTTTGCAGTTCTCT+GGG | 0.491203 | 4.1:+82958281 | MS.gene24945:intron |
| TTAACAAGTGTAAGGAGAAA+GGG | 0.494005 | 4.1:+82956750 | MS.gene24945:CDS |
| TGAGTTCTTGTTCTAAGTAA+GGG | 0.499475 | 4.1:-82956541 | None:intergenic |
| CATTGATGCACTACCAAACC+TGG | 0.502169 | 4.1:+82956685 | MS.gene24945:CDS |
| CAGTTCTCTGGGAAAACCGT+TGG | 0.503997 | 4.1:+82958292 | MS.gene24945:intron |
| TTCCTAATTAACATTGGTCG+AGG | 0.510362 | 4.1:+82958547 | MS.gene24945:CDS |
| GATTGATCTTAACAAGTGTA+AGG | 0.511620 | 4.1:+82956742 | MS.gene24945:CDS |
| GTGGTGGGAAGCGGATCCTC+CGG | 0.514823 | 4.1:+82956647 | MS.gene24945:CDS |
| TTGTTACCTCATTGTGGAAG+CGG | 0.517009 | 4.1:+82958697 | MS.gene24945:CDS |
| TGTGATCGATTTGTTAGAAG+TGG | 0.519798 | 4.1:+82956866 | MS.gene24945:CDS |
| CATCAATGCACTTGGTCCGA+AGG | 0.522707 | 4.1:+82958522 | MS.gene24945:CDS |
| CGGGAGGTCATCAATGCACT+TGG | 0.525144 | 4.1:+82958514 | MS.gene24945:CDS |
| ACATCGTCAGTCAACACATC+AGG | 0.529708 | 4.1:-82956791 | None:intergenic |
| AGCAATGCAGAGACCAGCTC+TGG | 0.534018 | 4.1:-82958586 | None:intergenic |
| GATTTGTTAGAAGTGGAGAC+TGG | 0.538028 | 4.1:+82956873 | MS.gene24945:CDS |
| GATGCTAACTCAACAGCACT+TGG | 0.545705 | 4.1:-82958430 | None:intergenic |
| GTGTTGATCCGTGCGGTGGT+GGG | 0.548090 | 4.1:+82956632 | MS.gene24945:CDS |
| TAAATATAAGTTGACCACTA+AGG | 0.548484 | 4.1:+82956904 | MS.gene24945:CDS |
| AAGGGTTTCCTAATTAACAT+TGG | 0.548985 | 4.1:+82958541 | MS.gene24945:CDS |
| TGAAGCTCGAAACAATCTCC+AGG | 0.552320 | 4.1:-82956703 | None:intergenic |
| ATCAATGCACTTGGTCCGAA+GGG | 0.555023 | 4.1:+82958523 | MS.gene24945:CDS |
| GAGTTAACAGTGGCTTTCCA+AGG | 0.557323 | 4.1:-82958780 | None:intergenic |
| GCATGTTGATGAGCCAGAGC+TGG | 0.562230 | 4.1:+82958573 | MS.gene24945:CDS |
| GCAATTGCCAAGAGAGCTGA+AGG | 0.564274 | 4.1:+82958343 | MS.gene24945:CDS |
| ATGTTAATTAGGAAACCCTT+CGG | 0.565210 | 4.1:-82958538 | None:intergenic |
| GGTTTCCTCTGTAAGAGAGC+AGG | 0.567739 | 4.1:-82958476 | None:intergenic |
| CTCCCGGTTGATGATGTGAC+GGG | 0.570845 | 4.1:-82958497 | None:intergenic |
| TGTTGCCTGCTCTCTTACAG+AGG | 0.574421 | 4.1:+82958471 | MS.gene24945:CDS |
| CAAGTGCATTGATGACCTCC+CGG | 0.574575 | 4.1:-82958513 | None:intergenic |
| TGATGCTTACACTTCTTAGG+AGG | 0.574694 | 4.1:+82956834 | MS.gene24945:CDS |
| AGCAGCTCTTCGGGAACATG+AGG | 0.575222 | 4.1:-82958655 | None:intergenic |
| ATTGTTTCGAGCTTCAGCGT+TGG | 0.579525 | 4.1:+82956710 | MS.gene24945:CDS |
| CTATTCTAGAACTCAAAAGC+AGG | 0.579821 | 4.1:+82958387 | MS.gene24945:CDS |
| TTGCTTGATGGTCGTTTGGG+TGG | 0.580551 | 4.1:+82958604 | MS.gene24945:CDS |
| TCCAAGAACAAGGTCAGCCA+TGG | 0.581407 | 4.1:-82958740 | None:intergenic |
| CCTCCAAGTTTCCAAGAACA+AGG | 0.582993 | 4.1:-82958750 | None:intergenic |
| TTTGCTGGTAATCACATATG+CGG | 0.598668 | 4.1:-82956583 | None:intergenic |
| GCCCAGCCCAACAATGCCAA+CGG | 0.600871 | 4.1:-82958308 | None:intergenic |
| ACCTCATTGTGGAAGCGGCA+CGG | 0.604339 | 4.1:+82958702 | MS.gene24945:CDS |
| CCTCCCGGTTGATGATGTGA+CGG | 0.605464 | 4.1:-82958498 | None:intergenic |
| AACAACCAGTATGTCGCAGT+TGG | 0.611894 | 4.1:-82958452 | None:intergenic |
| AGGCATGTTAATTAAACCAA+GGG | 0.611922 | 4.1:-82958802 | None:intergenic |
| GGTAGAAACTCGAACTGCCA+TGG | 0.612477 | 4.1:+82958723 | MS.gene24945:CDS |
| GAGGCATGTTAATTAAACCA+AGG | 0.621442 | 4.1:-82958803 | None:intergenic |
| TCTCAATTCTTAACTCAACA+TGG | 0.624874 | 4.1:+82956608 | MS.gene24945:CDS |
| ATCCGCTTCCCACCACCGCA+CGG | 0.626104 | 4.1:-82956640 | None:intergenic |
| AGAAGTGGAGACTGGAAGCA+TGG | 0.626810 | 4.1:+82956881 | MS.gene24945:CDS |
| ACCGTGCCGCTTCCACAATG+AGG | 0.643583 | 4.1:-82958703 | None:intergenic |
| TGGCGTGTTGATCCGTGCGG+TGG | 0.650323 | 4.1:+82956628 | MS.gene24945:CDS |
| TAAACCAAGGGAGTTAACAG+TGG | 0.661671 | 4.1:-82958790 | None:intergenic |
| AACCCGTCACATCATCAACC+GGG | 0.665920 | 4.1:+82958495 | MS.gene24945:CDS |
| GTTGTCTTGTTACCTCATTG+TGG | 0.680257 | 4.1:+82958691 | MS.gene24945:CDS |
| GAGCTCAGAATCAACGCCGG+AGG | 0.685431 | 4.1:-82956663 | None:intergenic |
| AATGAGCTCAGAATCAACGC+CGG | 0.695912 | 4.1:-82956666 | None:intergenic |
| AAGGGAGTACGTGAGCTACG+AGG | 0.730691 | 4.1:-82956523 | None:intergenic |
| CCGTCACATCATCAACCGGG+AGG | 0.750270 | 4.1:+82958498 | MS.gene24945:CDS |
| ACATGGCGTGTTGATCCGTG+CGG | 0.784282 | 4.1:+82956625 | MS.gene24945:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAATATTATCAAGAAT+CGG | - | chr4.1:82957023-82957042 | None:intergenic | 15.0% |
| !!! | TAAATGTTTTTGCTTAAAAA+TGG | + | chr4.1:82958000-82958019 | MS.gene24945:intron | 15.0% |
| !! | ATATTATGAAAAAGTAGTTG+TGG | + | chr4.1:82957432-82957451 | MS.gene24945:intron | 20.0% |
| !! | TAATTTAAGAACTTGGTTAT+AGG | - | chr4.1:82957291-82957310 | None:intergenic | 20.0% |
| !! | TAGATTCAGAAAATTGAATT+GGG | - | chr4.1:82957897-82957916 | None:intergenic | 20.0% |
| !! | TCATAATATTATCAAGAATC+GGG | - | chr4.1:82957022-82957041 | None:intergenic | 20.0% |
| !! | TGTAAATATTGGAAAATAAG+TGG | - | chr4.1:82958085-82958104 | None:intergenic | 20.0% |
| !! | TTAGATTCAGAAAATTGAAT+TGG | - | chr4.1:82957898-82957917 | None:intergenic | 20.0% |
| !! | TTTGATATTGTGAAAAATTG+TGG | + | chr4.1:82957332-82957351 | MS.gene24945:intron | 20.0% |
| !!! | AATTCAATTTTCTGAATCTA+AGG | + | chr4.1:82957897-82957916 | MS.gene24945:intron | 20.0% |
| !!! | AGGAACATAGTTTTAAATTA+TGG | + | chr4.1:82957638-82957657 | MS.gene24945:intron | 20.0% |
| !!! | ATTAATTTGTTGTTGGAAAA+TGG | - | chr4.1:82958262-82958281 | None:intergenic | 20.0% |
| !!! | ATTCAATTTTCTGAATCTAA+GGG | + | chr4.1:82957898-82957917 | MS.gene24945:intron | 20.0% |
| !!! | TAATCTTACAATCTGATTTT+TGG | + | chr4.1:82957129-82957148 | MS.gene24945:intron | 20.0% |
| ! | AAAAACCATGATTAGAAAGT+TGG | - | chr4.1:82956944-82956963 | None:intergenic | 25.0% |
| ! | AGCTTACGAATTGTAAATAT+TGG | - | chr4.1:82958096-82958115 | None:intergenic | 25.0% |
| ! | ATTATGTTTCAGCAAATTGA+AGG | + | chr4.1:82957062-82957081 | MS.gene24945:intron | 25.0% |
| ! | GCAACATTAATTTAAGAACT+TGG | - | chr4.1:82957298-82957317 | None:intergenic | 25.0% |
| ! | TAACACACTAATTGTATGTT+TGG | + | chr4.1:82957469-82957488 | MS.gene24945:intron | 25.0% |
| ! | TACATAACTATGACAAGAAA+CGG | - | chr4.1:82957804-82957823 | None:intergenic | 25.0% |
| !! | CAGCTGTAATATAAAAGTTT+TGG | + | chr4.1:82957671-82957690 | MS.gene24945:intron | 25.0% |
| !! | TAAATATAAGTTGACCACTA+AGG | + | chr4.1:82956904-82956923 | MS.gene24945:CDS | 25.0% |
| !! | TAACAAGACAACATTTTCTA+GGG | - | chr4.1:82958683-82958702 | None:intergenic | 25.0% |
| !! | TTAAGAATTGAGATTTTTGC+TGG | - | chr4.1:82956601-82956620 | None:intergenic | 25.0% |
| !!! | AAACGTTTTTAGTGTAAGTT+TGG | - | chr4.1:82957613-82957632 | None:intergenic | 25.0% |
| !!! | ACACTAAAAACGTTTTAAGT+AGG | + | chr4.1:82957618-82957637 | MS.gene24945:intron | 25.0% |
| !!! | ATACTTTAGCTTTTGCTTTT+TGG | - | chr4.1:82957268-82957287 | None:intergenic | 25.0% |
| !!! | CTGTAATATAAAAGTTTTGG+AGG | + | chr4.1:82957674-82957693 | MS.gene24945:intron | 25.0% |
| !!! | TGCTTTTTGGTGTATATAAA+AGG | - | chr4.1:82957255-82957274 | None:intergenic | 25.0% |
| !!! | TTAATGTTGCTTTTCTTTTG+TGG | + | chr4.1:82957308-82957327 | MS.gene24945:intron | 25.0% |
| AAGGGTTTCCTAATTAACAT+TGG | + | chr4.1:82958541-82958560 | MS.gene24945:CDS | 30.0% | |
| AATAGCCAACTTTCTAATCA+TGG | + | chr4.1:82956936-82956955 | MS.gene24945:intron | 30.0% | |
| AGAGTGAAGAAAAAAATGCT+TGG | + | chr4.1:82957206-82957225 | MS.gene24945:intron | 30.0% | |
| ATGTTAATTAGGAAACCCTT+CGG | - | chr4.1:82958541-82958560 | None:intergenic | 30.0% | |
| ATTCGTAAGCTTTCAAGATA+CGG | + | chr4.1:82958105-82958124 | MS.gene24945:intron | 30.0% | |
| CAATGATGTATCATGTTGTA+AGG | + | chr4.1:82958151-82958170 | MS.gene24945:intron | 30.0% | |
| CTTTATATTGTGGCAAATAG+CGG | - | chr4.1:82957742-82957761 | None:intergenic | 30.0% | |
| GATTAGAAAGTTGGCTATTA+TGG | - | chr4.1:82956935-82956954 | None:intergenic | 30.0% | |
| GATTGATCTTAACAAGTGTA+AGG | + | chr4.1:82956742-82956761 | MS.gene24945:CDS | 30.0% | |
| GTCATACTGCTCATTAAAAT+CGG | + | chr4.1:82958201-82958220 | MS.gene24945:intron | 30.0% | |
| GTTTAGCATTACTGAATAGA+AGG | + | chr4.1:82957104-82957123 | MS.gene24945:intron | 30.0% | |
| GTTTGGATTGAAATTGAGAA+TGG | - | chr4.1:82957596-82957615 | None:intergenic | 30.0% | |
| TATTATCAAGAATCGGGATA+CGG | - | chr4.1:82957016-82957035 | None:intergenic | 30.0% | |
| TCTCAATTCTTAACTCAACA+TGG | + | chr4.1:82956608-82956627 | MS.gene24945:CDS | 30.0% | |
| TTAACAAGTGTAAGGAGAAA+GGG | + | chr4.1:82956750-82956769 | MS.gene24945:CDS | 30.0% | |
| TTTGCCACAATATAAAGGTT+CGG | + | chr4.1:82957745-82957764 | MS.gene24945:intron | 30.0% | |
| ! | CAATTAGTGTGTTACTACAT+TGG | - | chr4.1:82957463-82957482 | None:intergenic | 30.0% |
| ! | GTAACAAGACAACATTTTCT+AGG | - | chr4.1:82958684-82958703 | None:intergenic | 30.0% |
| ! | TGAGTTCTTGTTCTAAGTAA+GGG | - | chr4.1:82956544-82956563 | None:intergenic | 30.0% |
| ! | TTGAGTTCTTGTTCTAAGTA+AGG | - | chr4.1:82956545-82956564 | None:intergenic | 30.0% |
| ! | TTTTCTGAATCTAAGGGAAA+TGG | + | chr4.1:82957904-82957923 | MS.gene24945:intron | 30.0% |
| !! | AGACGCAATTAATTTGTTGT+TGG | - | chr4.1:82958269-82958288 | None:intergenic | 30.0% |
| !! | CTATTATGGTTTTACCTTAG+TGG | - | chr4.1:82956921-82956940 | None:intergenic | 30.0% |
| !!! | CTTTTGAGTTCTAGAATAGT+AGG | - | chr4.1:82958386-82958405 | None:intergenic | 30.0% |
| !!! | TCATAGTTTTGTCATGATCA+TGG | + | chr4.1:82956990-82957009 | MS.gene24945:intron | 30.0% |
| AATTGAAGGCCAGTCATTAA+CGG | + | chr4.1:82957076-82957095 | MS.gene24945:intron | 35.0% | |
| ATCAGAGTGTGAATATCTTC+TGG | + | chr4.1:82957855-82957874 | MS.gene24945:intron | 35.0% | |
| ATGACAAGAAACGGAGATAA+AGG | - | chr4.1:82957795-82957814 | None:intergenic | 35.0% | |
| ATTAAAACCTTCAGCTCTCT+TGG | - | chr4.1:82958353-82958372 | None:intergenic | 35.0% | |
| CGCTATTTGCCACAATATAA+AGG | + | chr4.1:82957740-82957759 | MS.gene24945:intron | 35.0% | |
| CTTAACAAGTGTAAGGAGAA+AGG | + | chr4.1:82956749-82956768 | MS.gene24945:CDS | 35.0% | |
| CTTCACTCTAATTCTCTCAT+TGG | - | chr4.1:82957195-82957214 | None:intergenic | 35.0% | |
| GTGAAGAAAAAAATGCTTGG+TGG | + | chr4.1:82957209-82957228 | MS.gene24945:intron | 35.0% | |
| TACCTCGACCAATGTTAATT+AGG | - | chr4.1:82958552-82958571 | None:intergenic | 35.0% | |
| TACTCCGAACCTTTATATTG+TGG | - | chr4.1:82957752-82957771 | None:intergenic | 35.0% | |
| TGGATTGAAATTGAGAATGG+TGG | - | chr4.1:82957593-82957612 | None:intergenic | 35.0% | |
| TTCCTAATTAACATTGGTCG+AGG | + | chr4.1:82958547-82958566 | MS.gene24945:CDS | 35.0% | |
| TTTGCTGGTAATCACATATG+CGG | - | chr4.1:82956586-82956605 | None:intergenic | 35.0% | |
| !! | AATGCTTGGTGGTTTGTTAT+AGG | + | chr4.1:82957220-82957239 | MS.gene24945:intron | 35.0% |
| !! | ATGCTTGGTGGTTTGTTATA+GGG | + | chr4.1:82957221-82957240 | MS.gene24945:intron | 35.0% |
| !! | ATGTTGCTGATTTGGCTATT+GGG | + | chr4.1:82956810-82956829 | MS.gene24945:CDS | 35.0% |
| !! | ATTTGTTGTTGGAAAATGGC+AGG | - | chr4.1:82958258-82958277 | None:intergenic | 35.0% |
| !! | CTATTCTAGAACTCAAAAGC+AGG | + | chr4.1:82958387-82958406 | MS.gene24945:CDS | 35.0% |
| !! | TGTGATCGATTTGTTAGAAG+TGG | + | chr4.1:82956866-82956885 | MS.gene24945:CDS | 35.0% |
| !! | TTTGTTGTTGGAAAATGGCA+GGG | - | chr4.1:82958257-82958276 | None:intergenic | 35.0% |
| AAACCATACCCGTTAATGAC+TGG | - | chr4.1:82957088-82957107 | None:intergenic | 40.0% | |
| AGACTTGAAACAAAACGCCA+TGG | - | chr4.1:82957381-82957400 | None:intergenic | 40.0% | |
| ATTGAAGGCCAGTCATTAAC+GGG | + | chr4.1:82957077-82957096 | MS.gene24945:intron | 40.0% | |
| GAATTGGGATTAATGCTGAG+AGG | - | chr4.1:82957882-82957901 | None:intergenic | 40.0% | |
| GTTTGGATTGACGTTGAGTT+TGG | + | chr4.1:82957486-82957505 | MS.gene24945:intron | 40.0% | |
| TAAACCAAGGGAGTTAACAG+TGG | - | chr4.1:82958793-82958812 | None:intergenic | 40.0% | |
| TATGAGTACATCCCAGAAAC+AGG | + | chr4.1:82957955-82957974 | MS.gene24945:intron | 40.0% | |
| TGACCTTGTTCTTGGAAACT+TGG | + | chr4.1:82958747-82958766 | MS.gene24945:CDS | 40.0% | |
| TGATGCTTACACTTCTTAGG+AGG | + | chr4.1:82956834-82956853 | MS.gene24945:CDS | 40.0% | |
| TTGTTACCTCATTGTGGAAG+CGG | + | chr4.1:82958697-82958716 | MS.gene24945:CDS | 40.0% | |
| ! | GAGTATTGTAGTGCACTCTT+AGG | + | chr4.1:82957767-82957786 | MS.gene24945:intron | 40.0% |
| ! | GGTTGATGCTTACACTTCTT+AGG | + | chr4.1:82956831-82956850 | MS.gene24945:CDS | 40.0% |
| ! | GTTGTCTTGTTACCTCATTG+TGG | + | chr4.1:82958691-82958710 | MS.gene24945:CDS | 40.0% |
| ! | TTTAAGCCTTGTCGTGATCA+TGG | + | chr4.1:82956967-82956986 | MS.gene24945:intron | 40.0% |
| !! | AGTGCTGATAAGAGTAACCA+TGG | + | chr4.1:82957361-82957380 | MS.gene24945:intron | 40.0% |
| !! | GATGTTGCTGATTTGGCTAT+TGG | + | chr4.1:82956809-82956828 | MS.gene24945:CDS | 40.0% |
| !! | GATTTGTTAGAAGTGGAGAC+TGG | + | chr4.1:82956873-82956892 | MS.gene24945:CDS | 40.0% |
| !! | TTGGTGGTTTGTTATAGGGA+TGG | + | chr4.1:82957225-82957244 | MS.gene24945:intron | 40.0% |
| !!! | GATTTTTGGCACTCATAGTG+TGG | + | chr4.1:82957143-82957162 | MS.gene24945:intron | 40.0% |
| AAACCCGTCACATCATCAAC+CGG | + | chr4.1:82958494-82958513 | MS.gene24945:CDS | 45.0% | |
| AAAGCCACTGTTAACTCCCT+TGG | + | chr4.1:82958786-82958805 | MS.gene24945:CDS | 45.0% | |
| AACAACCAGTATGTCGCAGT+TGG | - | chr4.1:82958455-82958474 | None:intergenic | 45.0% | |
| AATGAGCTCAGAATCAACGC+CGG | - | chr4.1:82956669-82956688 | None:intergenic | 45.0% | |
| ACAAACCAAGTCACACAGCT+CGG | - | chr4.1:82957981-82958000 | None:intergenic | 45.0% | |
| ACAGTGGCTTTCCAAGGAAA+TGG | - | chr4.1:82958777-82958796 | None:intergenic | 45.0% | |
| ACATCGTCAGTCAACACATC+AGG | - | chr4.1:82956794-82956813 | None:intergenic | 45.0% | |
| AGCTACGAGGAGAACATCTA+TGG | - | chr4.1:82956513-82956532 | None:intergenic | 45.0% | |
| ATCAATGCACTTGGTCCGAA+GGG | + | chr4.1:82958523-82958542 | MS.gene24945:CDS | 45.0% | |
| ATTGCGTCTTTGCAGTTCTC+TGG | + | chr4.1:82958280-82958299 | MS.gene24945:intron | 45.0% | |
| ATTGTTTCGAGCTTCAGCGT+TGG | + | chr4.1:82956710-82956729 | MS.gene24945:CDS | 45.0% | |
| CAGTGGCTTTCCAAGGAAAT+GGG | - | chr4.1:82958776-82958795 | None:intergenic | 45.0% | |
| CATTGATGCACTACCAAACC+TGG | + | chr4.1:82956685-82956704 | MS.gene24945:CDS | 45.0% | |
| CCTCCAAGTTTCCAAGAACA+AGG | - | chr4.1:82958753-82958772 | None:intergenic | 45.0% | |
| CCTTGTTCTTGGAAACTTGG+AGG | + | chr4.1:82958750-82958769 | MS.gene24945:CDS | 45.0% | |
| CTATGACCATGATCACGACA+AGG | - | chr4.1:82956976-82956995 | None:intergenic | 45.0% | |
| CTCGAAACAATCTCCAGGTT+TGG | - | chr4.1:82956701-82956720 | None:intergenic | 45.0% | |
| GAGTTAACAGTGGCTTTCCA+AGG | - | chr4.1:82958783-82958802 | None:intergenic | 45.0% | |
| GATGCTAACTCAACAGCACT+TGG | - | chr4.1:82958433-82958452 | None:intergenic | 45.0% | |
| GGAAAACCGTTGGCATTGTT+GGG | + | chr4.1:82958302-82958321 | MS.gene24945:CDS | 45.0% | |
| TGAAGCTCGAAACAATCTCC+AGG | - | chr4.1:82956706-82956725 | None:intergenic | 45.0% | |
| TTGAGTTTGGCAAAACCACG+TGG | + | chr4.1:82957499-82957518 | MS.gene24945:intron | 45.0% | |
| TTGCGTCTTTGCAGTTCTCT+GGG | + | chr4.1:82958281-82958300 | MS.gene24945:intron | 45.0% | |
| TTGGCACTCATAGTGTGGTA+TGG | + | chr4.1:82957148-82957167 | MS.gene24945:intron | 45.0% | |
| ! | ACTGCAAGCTGCAACGATTT+TGG | - | chr4.1:82957566-82957585 | None:intergenic | 45.0% |
| ! | GACTGACGATGTTGCTGATT+TGG | + | chr4.1:82956802-82956821 | MS.gene24945:CDS | 45.0% |
| ! | GCATTGCTTGATGGTCGTTT+GGG | + | chr4.1:82958601-82958620 | MS.gene24945:CDS | 45.0% |
| ! | TGCATTGCTTGATGGTCGTT+TGG | + | chr4.1:82958600-82958619 | MS.gene24945:CDS | 45.0% |
| ! | TTCTAGGGAAAGCAGCTCTT+CGG | - | chr4.1:82958668-82958687 | None:intergenic | 45.0% |
| !!! | AGTTTTGGAGGTAATCGCAG+CGG | + | chr4.1:82957686-82957705 | MS.gene24945:intron | 45.0% |
| AACCCGTCACATCATCAACC+GGG | + | chr4.1:82958495-82958514 | MS.gene24945:CDS | 50.0% | |
| AACTTGGAGGCCCATTTCCT+TGG | + | chr4.1:82958763-82958782 | MS.gene24945:CDS | 50.0% | |
| AGAAGTGGAGACTGGAAGCA+TGG | + | chr4.1:82956881-82956900 | MS.gene24945:CDS | 50.0% | |
| AGCAAAACCACAGTACCACG+TGG | - | chr4.1:82957517-82957536 | None:intergenic | 50.0% | |
| AGCATCCAACTGCGACATAC+TGG | + | chr4.1:82958447-82958466 | MS.gene24945:CDS | 50.0% | |
| CATCAATGCACTTGGTCCGA+AGG | + | chr4.1:82958522-82958541 | MS.gene24945:CDS | 50.0% | |
| CTGGTCTCTGCATTGCTTGA+TGG | + | chr4.1:82958592-82958611 | MS.gene24945:CDS | 50.0% | |
| GCAATTGCCAAGAGAGCTGA+AGG | + | chr4.1:82958343-82958362 | MS.gene24945:CDS | 50.0% | |
| GGGAAAACCGTTGGCATTGT+TGG | + | chr4.1:82958301-82958320 | MS.gene24945:CDS | 50.0% | |
| GGTAGAAACTCGAACTGCCA+TGG | + | chr4.1:82958723-82958742 | MS.gene24945:CDS | 50.0% | |
| GGTTTCCTCTGTAAGAGAGC+AGG | - | chr4.1:82958479-82958498 | None:intergenic | 50.0% | |
| GTTGTTGGAAAATGGCAGGG+AGG | - | chr4.1:82958254-82958273 | None:intergenic | 50.0% | |
| TCCAAGAACAAGGTCAGCCA+TGG | - | chr4.1:82958743-82958762 | None:intergenic | 50.0% | |
| TCTAGGGAAAGCAGCTCTTC+GGG | - | chr4.1:82958667-82958686 | None:intergenic | 50.0% | |
| TGTTGCCTGCTCTCTTACAG+AGG | + | chr4.1:82958471-82958490 | MS.gene24945:CDS | 50.0% | |
| ! | AGGCCAGTCATTAACGGGTA+TGG | + | chr4.1:82957082-82957101 | MS.gene24945:intron | 50.0% |
| ! | CAAGTGCATTGATGACCTCC+CGG | - | chr4.1:82958516-82958535 | None:intergenic | 50.0% |
| ! | CAGTTCTCTGGGAAAACCGT+TGG | + | chr4.1:82958292-82958311 | MS.gene24945:intron | 50.0% |
| ! | GCAAGCTGCAACGATTTTGG+TGG | - | chr4.1:82957563-82957582 | None:intergenic | 50.0% |
| ! | TTGCTTGATGGTCGTTTGGG+TGG | + | chr4.1:82958604-82958623 | MS.gene24945:CDS | 50.0% |
| AACCGTTGGCATTGTTGGGC+TGG | + | chr4.1:82958306-82958325 | MS.gene24945:CDS | 55.0% | |
| ACCGTTGGCATTGTTGGGCT+GGG | + | chr4.1:82958307-82958326 | MS.gene24945:CDS | 55.0% | |
| ACCTCATTGTGGAAGCGGCA+CGG | + | chr4.1:82958702-82958721 | MS.gene24945:CDS | 55.0% | |
| AGCAATGCAGAGACCAGCTC+TGG | - | chr4.1:82958589-82958608 | None:intergenic | 55.0% | |
| AGCAGCTCTTCGGGAACATG+AGG | - | chr4.1:82958658-82958677 | None:intergenic | 55.0% | |
| CGGGAGGTCATCAATGCACT+TGG | + | chr4.1:82958514-82958533 | MS.gene24945:CDS | 55.0% | |
| GCCATGGCTGACCTTGTTCT+TGG | + | chr4.1:82958739-82958758 | MS.gene24945:CDS | 55.0% | |
| GGCAAAACCACGTGGTACTG+TGG | + | chr4.1:82957507-82957526 | MS.gene24945:intron | 55.0% | |
| GTTGGAAAATGGCAGGGAGG+AGG | - | chr4.1:82958251-82958270 | None:intergenic | 55.0% | |
| ! | AAGGGAGTACGTGAGCTACG+AGG | - | chr4.1:82956526-82956545 | None:intergenic | 55.0% |
| ! | ACACAGCTCGGCCTGTTTCT+GGG | - | chr4.1:82957969-82957988 | None:intergenic | 55.0% |
| ! | ACATGGCGTGTTGATCCGTG+CGG | + | chr4.1:82956625-82956644 | MS.gene24945:CDS | 55.0% |
| ! | ATTGTTGGGCTGGGCAGGAT+TGG | + | chr4.1:82958316-82958335 | MS.gene24945:CDS | 55.0% |
| ! | GCATGTTGATGAGCCAGAGC+TGG | + | chr4.1:82958573-82958592 | MS.gene24945:CDS | 55.0% |
| !! | CCTCCCGGTTGATGATGTGA+CGG | - | chr4.1:82958501-82958520 | None:intergenic | 55.0% |
| !! | CTCCCGGTTGATGATGTGAC+GGG | - | chr4.1:82958500-82958519 | None:intergenic | 55.0% |
| ACAGGCCGAGCTGTGTGACT+TGG | + | chr4.1:82957973-82957992 | MS.gene24945:intron | 60.0% | |
| CACACAGCTCGGCCTGTTTC+TGG | - | chr4.1:82957970-82957989 | None:intergenic | 60.0% | |
| CCGTCACATCATCAACCGGG+AGG | + | chr4.1:82958498-82958517 | MS.gene24945:CDS | 60.0% | |
| GAGCTCAGAATCAACGCCGG+AGG | - | chr4.1:82956666-82956685 | None:intergenic | 60.0% | |
| GATGGTCGTTTGGGTGGAGC+TGG | + | chr4.1:82958610-82958629 | MS.gene24945:CDS | 60.0% | |
| GCCCAGCCCAACAATGCCAA+CGG | - | chr4.1:82958311-82958330 | None:intergenic | 60.0% | |
| ! | GTGTTGATCCGTGCGGTGGT+GGG | + | chr4.1:82956632-82956651 | MS.gene24945:CDS | 60.0% |
| ! | TTGGCATTGTTGGGCTGGGC+AGG | + | chr4.1:82958311-82958330 | MS.gene24945:CDS | 60.0% |
| !! | ACCGTGCCGCTTCCACAATG+AGG | - | chr4.1:82958706-82958725 | None:intergenic | 60.0% |
| ATCCGCTTCCCACCACCGCA+CGG | - | chr4.1:82956643-82956662 | None:intergenic | 65.0% | |
| ! | CGTGTTGATCCGTGCGGTGG+TGG | + | chr4.1:82956631-82956650 | MS.gene24945:CDS | 65.0% |
| ! | GTGGTGGGAAGCGGATCCTC+CGG | + | chr4.1:82956647-82956666 | MS.gene24945:CDS | 65.0% |
| ! | TGGCGTGTTGATCCGTGCGG+TGG | + | chr4.1:82956628-82956647 | MS.gene24945:CDS | 65.0% |
| !! | ATCCGTGCGGTGGTGGGAAG+CGG | + | chr4.1:82956638-82956657 | MS.gene24945:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 82956503 | 82958813 | 82956503 | ID=MS.gene24945 |
| chr4.1 | mRNA | 82956503 | 82958813 | 82956503 | ID=MS.gene24945.t1;Parent=MS.gene24945 |
| chr4.1 | exon | 82956503 | 82956925 | 82956503 | ID=MS.gene24945.t1.exon1;Parent=MS.gene24945.t1 |
| chr4.1 | CDS | 82956503 | 82956925 | 82956503 | ID=cds.MS.gene24945.t1;Parent=MS.gene24945.t1 |
| chr4.1 | exon | 82958295 | 82958813 | 82958295 | ID=MS.gene24945.t1.exon2;Parent=MS.gene24945.t1 |
| chr4.1 | CDS | 82958295 | 82958813 | 82958295 | ID=cds.MS.gene24945.t1;Parent=MS.gene24945.t1 |
| Gene Sequence |
| Protein sequence |
