AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33395


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33395.t1 MTR_4g013090 96.486 313 11 0 1 313 1 313 0.0 613
MS.gene33395.t1 MTR_4g013100 89.172 314 33 1 1 313 1 314 0.0 565
MS.gene33395.t1 MTR_4g012960 87.859 313 35 1 1 313 1 310 0.0 563
MS.gene33395.t1 MTR_4g013135 87.220 313 40 0 1 313 1 313 0.0 522
MS.gene33395.t1 MTR_2g101840 62.102 314 118 1 1 313 1 314 8.92e-132 377
MS.gene33395.t1 MTR_8g033390 45.965 285 143 3 37 313 42 323 2.96e-90 272
MS.gene33395.t1 MTR_8g033400 40.656 305 171 3 16 313 32 333 4.81e-83 254
MS.gene33395.t1 MTR_8g033410 39.739 307 174 3 15 313 23 326 1.34e-80 248
MS.gene33395.t1 MTR_7g075830 42.593 270 140 4 57 312 46 314 3.51e-66 210
MS.gene33395.t1 MTR_4g013040 75.949 79 19 0 65 143 4 82 4.34e-36 129
MS.gene33395.t1 MTR_1g112510 33.333 285 164 7 49 308 66 349 6.03e-34 128
MS.gene33395.t1 MTR_4g005880 29.457 258 167 5 67 313 151 404 4.55e-28 114
MS.gene33395.t1 MTR_1g107480 27.365 296 199 6 30 313 80 371 5.22e-28 114
MS.gene33395.t1 MTR_3g005970 27.206 272 175 5 57 308 107 375 9.01e-25 103
MS.gene33395.t1 MTR_6g007170 28.244 262 171 5 57 306 111 367 9.26e-24 100
MS.gene33395.t1 MTR_7g078990 24.786 234 165 4 81 304 88 320 2.09e-16 80.1
MS.gene33395.t1 MTR_6g007175 25.000 256 168 4 57 306 80 317 1.23e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33395.t1 AT1G79870 74.121 313 81 0 1 313 1 313 7.90e-163 456
MS.gene33395.t1 AT1G79870 69.329 313 77 1 1 313 1 294 5.13e-146 412
MS.gene33395.t1 AT1G12550 52.347 277 131 1 37 312 44 320 2.80e-100 298
MS.gene33395.t1 AT2G45630 43.728 279 155 2 37 313 60 338 3.07e-81 249
MS.gene33395.t1 AT1G17745 28.283 297 199 5 30 313 107 402 6.27e-32 125
MS.gene33395.t1 AT4G34200 27.986 293 201 5 30 313 86 377 2.76e-31 123
MS.gene33395.t1 AT1G68010 31.338 284 171 4 49 308 66 349 8.08e-31 119
MS.gene33395.t1 AT1G68010 31.636 275 164 4 49 299 66 340 2.02e-30 118
MS.gene33395.t1 AT1G68010 31.228 285 171 5 49 308 66 350 4.03e-29 115
MS.gene33395.t1 AT3G19480 29.730 259 165 7 67 313 109 362 2.20e-27 112
MS.gene33395.t1 AT1G17745 26.006 323 200 7 30 313 107 429 5.10e-26 108
MS.gene33395.t1 AT1G72190 28.958 259 154 5 57 295 105 353 5.09e-25 103
MS.gene33395.t1 AT5G14780 27.203 261 183 3 57 310 95 355 2.50e-24 101
MS.gene33395.t1 AT5G14780 27.203 261 183 3 57 310 83 343 2.55e-24 101
MS.gene33395.t1 AT5G14780 27.203 261 183 3 57 310 109 369 3.73e-24 101
MS.gene33395.t1 AT2G45630 36.441 118 74 1 37 153 60 177 6.32e-18 80.5
MS.gene33395.t1 AT1G01510 23.207 237 169 4 81 304 96 332 3.12e-14 73.6

Find 90 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAAAACGGTTGGCATTAT+TGG 0.182597 4.2:+87734205 MS.gene33395:CDS
TTTGGGTAGTACTTGTATTT+TGG 0.194546 4.2:-87734316 None:intergenic
ATTAAAACCTTCAGCTCTTT+TGG 0.229484 4.2:-87734254 None:intergenic
TACCTCGACCGATGTTAATT+AGG 0.273239 4.2:-87734453 None:intergenic
TGCACTCCTTGAAGGTCGTT+TGG 0.280764 4.2:+87734504 MS.gene33395:CDS
CATGTTCCCGAAGAGCTATT+TGG 0.283219 4.2:+87734562 MS.gene33395:CDS
GCCATGGCTGACCTTGTTCT+TGG 0.291981 4.2:+87734643 MS.gene33395:CDS
GATGCTAACTCAACAACATT+TGG 0.293329 4.2:-87734334 None:intergenic
GTTTGATGCTTACACTTCTT+AGG 0.302322 4.2:+87732345 MS.gene33395:CDS
GACTGACGATGTTGCTGATT+TGG 0.318415 4.2:+87732316 MS.gene33395:CDS
GTAAAACGGTTGGCATTATT+GGG 0.321722 4.2:+87734206 MS.gene33395:CDS
TCTAGCCCAAATAGCTCTTC+GGG 0.350761 4.2:-87734568 None:intergenic
GATGTTGCTGATTTGGCTAT+TGG 0.367670 4.2:+87732323 MS.gene33395:CDS
TTGAGTTCTTGTTCTAAGTA+AGG 0.368394 4.2:-87732056 None:intergenic
ATGTTCCCGAAGAGCTATTT+GGG 0.374695 4.2:+87734563 MS.gene33395:CDS
TTCTAGCCCAAATAGCTCTT+CGG 0.379604 4.2:-87734569 None:intergenic
AGCTAGGAGGAGAACATCTA+TGG 0.381468 4.2:-87732024 None:intergenic
CCTTGTTCTTGGAAACTTGG+AGG 0.385110 4.2:+87734654 MS.gene33395:CDS
CGCGTTGATCCGTGCGGTGG+TGG 0.389537 4.2:+87732145 MS.gene33395:CDS
GCACTCCTTGAAGGTCGTTT+GGG 0.391897 4.2:+87734505 MS.gene33395:CDS
AACTTGGAGGCTCATTTCCT+TGG 0.395330 4.2:+87734667 MS.gene33395:CDS
AACGGTTGGCATTATTGGGC+TGG 0.399643 4.2:+87734210 MS.gene33395:CDS
ATTGTGTCTTTGCAGTTCTC+TGG 0.411443 4.2:+87734184 MS.gene33395:intron
ATCCGTGCGGTGGTGGGAAG+CGG 0.412897 4.2:+87732152 MS.gene33395:CDS
CTGGTCTCTGCACTCCTTGA+AGG 0.428194 4.2:+87734496 MS.gene33395:CDS
CTCGAAACAATCTCCAGCTT+TGG 0.428346 4.2:-87732212 None:intergenic
TGACCTTGTTCTTGGAAACT+TGG 0.428681 4.2:+87734651 MS.gene33395:CDS
GAAGGTCGTTTGGGTGGAGC+TGG 0.435302 4.2:+87734514 MS.gene33395:CDS
CTTAACAAGTGTAAGGAGAA+AGG 0.448740 4.2:+87732263 MS.gene33395:CDS
ATGCTAACTCAACAACATTT+GGG 0.448912 4.2:-87734333 None:intergenic
AAAACCACTGTTAACTCCCT+TGG 0.451254 4.2:+87734690 MS.gene33395:CDS
ATTATTGGGCTGGGAAGGAT+TGG 0.452955 4.2:+87734220 MS.gene33395:CDS
CTCCACCCAAACGACCTTCA+AGG 0.467709 4.2:-87734510 None:intergenic
GGTAATCACATATGCGGAAA+AGG 0.474537 4.2:-87732091 None:intergenic
TTTGCAGTTCTCTGGTAAAA+CGG 0.480038 4.2:+87734192 MS.gene33395:intron
ACGGTTGGCATTATTGGGCT+GGG 0.485770 4.2:+87734211 MS.gene33395:CDS
TTAACAAGTGTAAGGAGAAA+GGG 0.494005 4.2:+87732264 MS.gene33395:CDS
AAACCCGTCACATCATCAAT+CGG 0.494601 4.2:+87734398 MS.gene33395:CDS
TATTGATGCACTACCAAAGC+TGG 0.498698 4.2:+87732199 MS.gene33395:CDS
TGAGTTCTTGTTCTAAGTAA+GGG 0.499475 4.2:-87732055 None:intergenic
CAGTTCTCTGGTAAAACGGT+TGG 0.505237 4.2:+87734196 MS.gene33395:intron
GATTGATCTTAACAAGTGTA+AGG 0.511620 4.2:+87732256 MS.gene33395:CDS
CGGGAGGTCATCAATGCACT+TGG 0.512262 4.2:+87734418 MS.gene33395:CDS
GTGGTGGGAAGCGGATCCTC+CGG 0.514823 4.2:+87732161 MS.gene33395:CDS
CTCCTTGAAGGTCGTTTGGG+TGG 0.515771 4.2:+87734508 MS.gene33395:CDS
TTGGCATTATTGGGCTGGGA+AGG 0.517587 4.2:+87734215 MS.gene33395:CDS
TGTGATCGATTTGTTAGAAG+TGG 0.519798 4.2:+87732380 MS.gene33395:CDS
AGGAGTGCAGAGACCAGCTC+TGG 0.522320 4.2:-87734490 None:intergenic
CATCAATGCACTTGGTCCGA+AGG 0.522707 4.2:+87734426 MS.gene33395:CDS
ACATCGTCAGTCAACACATC+AGG 0.529708 4.2:-87732305 None:intergenic
AGTAAGGGAGTACTTGAGCT+AGG 0.535794 4.2:-87732040 None:intergenic
GATTTGTTAGAAGTGGAGAC+TGG 0.538028 4.2:+87732387 MS.gene33395:CDS
TTCCTAATTAACATCGGTCG+AGG 0.539379 4.2:+87734451 MS.gene33395:CDS
AACCCGTCACATCATCAATC+GGG 0.545990 4.2:+87734399 MS.gene33395:CDS
GCGTTGATCCGTGCGGTGGT+GGG 0.548090 4.2:+87732146 MS.gene33395:CDS
TAAATATAAGTTGACCACTA+AGG 0.548484 4.2:+87732418 MS.gene33395:CDS
ATCAATGCACTTGGTCCGAA+GGG 0.555023 4.2:+87734427 MS.gene33395:CDS
GCATGTTGATGAGCCAGAGC+TGG 0.562230 4.2:+87734477 MS.gene33395:CDS
GCCTCATGTTGGAAGCGGCA+CGG 0.562999 4.2:+87734606 MS.gene33395:CDS
ATGTTAATTAGGAAACCCTT+CGG 0.565210 4.2:-87734442 None:intergenic
GGTTTCCTCTGTAAGAGAGC+AGG 0.567739 4.2:-87734380 None:intergenic
GCAATTGCCAAAAGAGCTGA+AGG 0.572482 4.2:+87734247 MS.gene33395:CDS
TGATGCTTACACTTCTTAGG+AGG 0.574694 4.2:+87732348 MS.gene33395:CDS
ATTGTTTCGAGCTTCAGCGT+TGG 0.579525 4.2:+87732224 MS.gene33395:CDS
TCCAAGAACAAGGTCAGCCA+TGG 0.581407 4.2:-87734644 None:intergenic
TGTTGCCTGCTCTCTTACAG+AGG 0.581856 4.2:+87734375 MS.gene33395:CDS
CCTCCAAGTTTCCAAGAACA+AGG 0.582993 4.2:-87734654 None:intergenic
CTCCCGATTGATGATGTGAC+GGG 0.583689 4.2:-87734401 None:intergenic
AACAACTAGTATGTCGCAGT+TGG 0.597542 4.2:-87734356 None:intergenic
TTGCTGCCTCATGTTGGAAG+CGG 0.600868 4.2:+87734601 MS.gene33395:CDS
CTATTCTAGAACTCAAAAGC+AGG 0.606500 4.2:+87734291 MS.gene33395:CDS
GGTAGAAACTCGAACTGCCA+TGG 0.612477 4.2:+87734627 MS.gene33395:CDS
AATAGCTCTTCGGGAACATG+AGG 0.622578 4.2:-87734559 None:intergenic
TCTCAATTCTTAACTCAACA+TGG 0.624464 4.2:+87732122 MS.gene33395:CDS
CCTCCCGATTGATGATGTGA+CGG 0.624802 4.2:-87734402 None:intergenic
ACCGTGCCGCTTCCAACATG+AGG 0.625427 4.2:-87734607 None:intergenic
ATCCGCTTCCCACCACCGCA+CGG 0.626104 4.2:-87732154 None:intergenic
TTTGCGGGTAATCACATATG+CGG 0.626467 4.2:-87732097 None:intergenic
AGAAGTGGAGACTGGAAGCA+TGG 0.626810 4.2:+87732395 MS.gene33395:CDS
AGTCATGTAGATTAAACCAA+GGG 0.639811 4.2:-87734706 None:intergenic
GTTGTGTTGCTGCCTCATGT+TGG 0.642237 4.2:+87734595 MS.gene33395:CDS
TAAACCAAGGGAGTTAACAG+TGG 0.644772 4.2:-87734694 None:intergenic
GAGTCATGTAGATTAAACCA+AGG 0.656624 4.2:-87734707 None:intergenic
AAGGGAGTACTTGAGCTAGG+AGG 0.665697 4.2:-87732037 None:intergenic
TGGCGCGTTGATCCGTGCGG+TGG 0.667823 4.2:+87732142 MS.gene33395:CDS
AAGGGTTTCCTAATTAACAT+CGG 0.671669 4.2:+87734445 MS.gene33395:CDS
CCGTCACATCATCAATCGGG+AGG 0.679435 4.2:+87734402 MS.gene33395:CDS
AAGCTCAGAATCAACGCCGG+AGG 0.690169 4.2:-87732177 None:intergenic
AATAAGCTCAGAATCAACGC+CGG 0.694388 4.2:-87732180 None:intergenic
ACATGGCGCGTTGATCCGTG+CGG 0.713860 4.2:+87732139 MS.gene33395:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAATATTGAAAAATAAG+TGG - chr4.2:87733989-87734008 None:intergenic 15.0%
!! TTCATAATATTATCAAGAAT+CGG - chr4.2:87732537-87732556 None:intergenic 15.0%
!!! AAATATTTTTAGTGTAAGTT+TGG - chr4.2:87733535-87733554 None:intergenic 15.0%
!!! TAAATGTTTTTGCTTAAAAA+TGG + chr4.2:87733904-87733923 MS.gene33395:intron 15.0%
!! AAATGCACTAAAAATGTTAT+AGG + chr4.2:87732807-87732826 MS.gene33395:intron 20.0%
!! ATATTATGAAAAAGTAGTTG+TGG + chr4.2:87733372-87733391 MS.gene33395:intron 20.0%
!! TCATAATATTATCAAGAATC+GGG - chr4.2:87732536-87732555 None:intergenic 20.0%
!!! ACACTAAAAATATTTCAAGT+AGG + chr4.2:87733540-87733559 MS.gene33395:intron 20.0%
!!! AGGAACATTGTTTTAAATTA+TGG + chr4.2:87733560-87733579 MS.gene33395:intron 20.0%
!!! ATTAATTTGTTGTTGGAAAA+TGG - chr4.2:87734166-87734185 None:intergenic 20.0%
!!! CTGTAATATAAAAGTTTTAG+AGG + chr4.2:87733596-87733615 MS.gene33395:intron 20.0%
!!! TTCCAAATTAAAAGTTTTAG+AGG + chr4.2:87732841-87732860 MS.gene33395:intron 20.0%
! AAAAACCATGATTAGAAAGT+TGG - chr4.2:87732458-87732477 None:intergenic 25.0%
! AAGAAAAGCAACATCAATTT+AGG - chr4.2:87733238-87733257 None:intergenic 25.0%
! AATAACCAACTTTCTAATCA+TGG + chr4.2:87732450-87732469 MS.gene33395:intron 25.0%
! ATGATCTAACGTTTATAGAT+AGG + chr4.2:87732948-87732967 MS.gene33395:intron 25.0%
! ATTATGTTTCAGCAAATTGA+AGG + chr4.2:87732996-87733015 MS.gene33395:intron 25.0%
! GTAAACTAAATGTGTATATG+TGG + chr4.2:87733394-87733413 MS.gene33395:intron 25.0%
! TAGAGTTAAGAAAAAATGCT+TGG + chr4.2:87733139-87733158 MS.gene33395:intron 25.0%
! TTCATACTGCTCATTAAAAT+CGG + chr4.2:87734105-87734124 MS.gene33395:intron 25.0%
! TTTGATATTGTGAAGAATTG+TGG + chr4.2:87733265-87733284 MS.gene33395:intron 25.0%
!! GATTAGAAAGTTGGTTATTA+TGG - chr4.2:87732449-87732468 None:intergenic 25.0%
!! GTTAAGAATTGAGATTTTTG+CGG - chr4.2:87732116-87732135 None:intergenic 25.0%
!! TAAATATAAGTTGACCACTA+AGG + chr4.2:87732418-87732437 MS.gene33395:CDS 25.0%
!! TAATCTTACCATCTGATTTT+TGG + chr4.2:87733063-87733082 MS.gene33395:intron 25.0%
!! TTAAGAATTGAGATTTTTGC+GGG - chr4.2:87732115-87732134 None:intergenic 25.0%
!!! ACATTTTTAGTGCATTTTTG+TGG - chr4.2:87732804-87732823 None:intergenic 25.0%
!!! AGACACAATTAATTTGTTGT+TGG - chr4.2:87734173-87734192 None:intergenic 25.0%
!!! ATACTTTAGCTTTTGCTTTT+TGG - chr4.2:87733201-87733220 None:intergenic 25.0%
!!! CTGTAGTTTTAGCAAAATTA+TGG + chr4.2:87733474-87733493 MS.gene33395:intron 25.0%
!!! GACCTCTAAAACTTTTAATT+TGG - chr4.2:87732846-87732865 None:intergenic 25.0%
!!! TGCTTTTTGGTGTATATAAA+AGG - chr4.2:87733188-87733207 None:intergenic 25.0%
!!! TTATTATGGTTTTACCTTAG+TGG - chr4.2:87732435-87732454 None:intergenic 25.0%
AAGGGTTTCCTAATTAACAT+CGG + chr4.2:87734445-87734464 MS.gene33395:CDS 30.0%
AGACTTGAAACAAAAAGCAA+TGG - chr4.2:87733314-87733333 None:intergenic 30.0%
AGTTAAGAAAAAATGCTTGG+TGG + chr4.2:87733142-87733161 MS.gene33395:intron 30.0%
ATAACTTCCATTTCCATTAG+AGG - chr4.2:87733806-87733825 None:intergenic 30.0%
ATGCTAACTCAACAACATTT+GGG - chr4.2:87734336-87734355 None:intergenic 30.0%
ATGTTAATTAGGAAACCCTT+CGG - chr4.2:87734445-87734464 None:intergenic 30.0%
CAATGATGTATCATGTTGTA+AGG + chr4.2:87734055-87734074 MS.gene33395:intron 30.0%
CTAGTAGTTTGACAAAGTTA+TGG + chr4.2:87732560-87732579 MS.gene33395:intron 30.0%
CTTAACTCTAATTCTGTCAT+TGG - chr4.2:87733129-87733148 None:intergenic 30.0%
CTTTATATTGTGGCAAATAG+CGG - chr4.2:87733664-87733683 None:intergenic 30.0%
GATTGATCTTAACAAGTGTA+AGG + chr4.2:87732256-87732275 MS.gene33395:CDS 30.0%
GCACTAAAAATGTTATAGGT+AGG + chr4.2:87732811-87732830 MS.gene33395:intron 30.0%
GTCAAAATCAAGGTAGTTTA+TGG + chr4.2:87732755-87732774 MS.gene33395:intron 30.0%
GTTTAGCATTACTGAATAGA+AGG + chr4.2:87733038-87733057 MS.gene33395:intron 30.0%
TCTCAATTCTTAACTCAACA+TGG + chr4.2:87732122-87732141 MS.gene33395:CDS 30.0%
TGTGAGTTTCAACAAAATCA+CGG - chr4.2:87732719-87732738 None:intergenic 30.0%
TTAACAAGTGTAAGGAGAAA+GGG + chr4.2:87732264-87732283 MS.gene33395:CDS 30.0%
TTTGCCACAATATAAAGGTT+CGG + chr4.2:87733667-87733686 MS.gene33395:intron 30.0%
! ATTAAAACCTTCAGCTCTTT+TGG - chr4.2:87734257-87734276 None:intergenic 30.0%
! TGAGTTCTTGTTCTAAGTAA+GGG - chr4.2:87732058-87732077 None:intergenic 30.0%
! TGTAGCTTTTGTCAAAATCA+AGG + chr4.2:87732745-87732764 MS.gene33395:intron 30.0%
! TTGAGTTCTTGTTCTAAGTA+AGG - chr4.2:87732059-87732078 None:intergenic 30.0%
! TTTGGGTAGTACTTGTATTT+TGG - chr4.2:87734319-87734338 None:intergenic 30.0%
!! ATTCGTTAGCTTTCAAGATA+CGG + chr4.2:87734009-87734028 MS.gene33395:intron 30.0%
!!! ACTTTTAGGATCCTTTATCT+CGG + chr4.2:87733703-87733722 MS.gene33395:intron 30.0%
!!! CAGCATGTGTGTTTTAATAT+TGG - chr4.2:87732650-87732669 None:intergenic 30.0%
!!! TGTTTTGACAAAAGCTACAA+TGG - chr4.2:87732615-87732634 None:intergenic 30.0%
!!! TTAAAAGTTTTAGAGGTCTC+TGG + chr4.2:87732848-87732867 MS.gene33395:intron 30.0%
!!! TTGATGTTGCTTTTCTTTTG+CGG + chr4.2:87733241-87733260 MS.gene33395:intron 30.0%
AACCATGATGAAATGAACAG+TGG - chr4.2:87732905-87732924 None:intergenic 35.0%
AATATCTTCTGGACCTCTAA+TGG + chr4.2:87733790-87733809 MS.gene33395:intron 35.0%
ACAAAAGCTACAATGGCTTT+GGG - chr4.2:87732608-87732627 None:intergenic 35.0%
ATCAGAGTGTGAATATCTTC+TGG + chr4.2:87733779-87733798 MS.gene33395:intron 35.0%
ATGACAAGAAACCGAGATAA+AGG - chr4.2:87733717-87733736 None:intergenic 35.0%
ATGTTGAGTTAGGCAAAATC+AGG + chr4.2:87733421-87733440 MS.gene33395:intron 35.0%
CAATTTAGGAGCTTGGTTAT+AGG - chr4.2:87733224-87733243 None:intergenic 35.0%
CGCTATTTGCCACAATATAA+AGG + chr4.2:87733662-87733681 MS.gene33395:intron 35.0%
CTTAACAAGTGTAAGGAGAA+AGG + chr4.2:87732263-87732282 MS.gene33395:CDS 35.0%
GATGCTAACTCAACAACATT+TGG - chr4.2:87734337-87734356 None:intergenic 35.0%
GTAAAACGGTTGGCATTATT+GGG + chr4.2:87734206-87734225 MS.gene33395:CDS 35.0%
GTAGTTTGACAAAGTTATGG+TGG + chr4.2:87732563-87732582 MS.gene33395:intron 35.0%
GTTTGATGCTTACACTTCTT+AGG + chr4.2:87732345-87732364 MS.gene33395:CDS 35.0%
TACTCCGAACCTTTATATTG+TGG - chr4.2:87733674-87733693 None:intergenic 35.0%
TATGAGTGCCAAAAATCAGA+TGG - chr4.2:87733074-87733093 None:intergenic 35.0%
TATTATCAAGAATCGGGACA+CGG - chr4.2:87732530-87732549 None:intergenic 35.0%
TCAGTAATGCTAAACCATAC+CGG - chr4.2:87733033-87733052 None:intergenic 35.0%
TGTTGAGTTAGGCAAAATCA+GGG + chr4.2:87733422-87733441 MS.gene33395:intron 35.0%
TTCCACTGTTCATTTCATCA+TGG + chr4.2:87732900-87732919 MS.gene33395:intron 35.0%
TTTGCAGTTCTCTGGTAAAA+CGG + chr4.2:87734192-87734211 MS.gene33395:intron 35.0%
! ACACATGCTGATTGTATGTT+GGG + chr4.2:87732660-87732679 MS.gene33395:intron 35.0%
! AGCTTTTGTCAAAACAGTAG+TGG + chr4.2:87732619-87732638 MS.gene33395:intron 35.0%
! ATGTGGATTGATGTTGAGTT+AGG + chr4.2:87733411-87733430 MS.gene33395:intron 35.0%
! GAGTATAGTAGTGCACTTTT+AGG + chr4.2:87733689-87733708 MS.gene33395:intron 35.0%
! TTAGTGCATTTTTGTGGTGA+CGG - chr4.2:87732798-87732817 None:intergenic 35.0%
! TTTGGGGTTTCAACAAATCA+CGG - chr4.2:87732591-87732610 None:intergenic 35.0%
!! AATGCTTGGTGGTTTGTTAT+AGG + chr4.2:87733153-87733172 MS.gene33395:intron 35.0%
!! ATGCTTGGTGGTTTGTTATA+GGG + chr4.2:87733154-87733173 MS.gene33395:intron 35.0%
!! ATTTGTTGTTGGAAAATGGC+AGG - chr4.2:87734162-87734181 None:intergenic 35.0%
!! CTATTCTAGAACTCAAAAGC+AGG + chr4.2:87734291-87734310 MS.gene33395:CDS 35.0%
!! TGTGATCGATTTGTTAGAAG+TGG + chr4.2:87732380-87732399 MS.gene33395:CDS 35.0%
!! TTTGTTGTTGGAAAATGGCA+GGG - chr4.2:87734161-87734180 None:intergenic 35.0%
!!! AGTTTTAGAGGTAATCACAG+CGG + chr4.2:87733608-87733627 MS.gene33395:intron 35.0%
AAAACCACTGTTAACTCCCT+TGG + chr4.2:87734690-87734709 MS.gene33395:CDS 40.0%
AAACCCGTCACATCATCAAT+CGG + chr4.2:87734398-87734417 MS.gene33395:CDS 40.0%
AACAACTAGTATGTCGCAGT+TGG - chr4.2:87734359-87734378 None:intergenic 40.0%
AATAAGCTCAGAATCAACGC+CGG - chr4.2:87732183-87732202 None:intergenic 40.0%
ATGTTCCCGAAGAGCTATTT+GGG + chr4.2:87734563-87734582 MS.gene33395:CDS 40.0%
ATTGAAGGCCAGTCATTAAC+CGG + chr4.2:87733011-87733030 MS.gene33395:intron 40.0%
ATTGTGTCTTTGCAGTTCTC+TGG + chr4.2:87734184-87734203 MS.gene33395:intron 40.0%
GACAAAAGCTACAATGGCTT+TGG - chr4.2:87732609-87732628 None:intergenic 40.0%
GCAACATCAATTTAGGAGCT+TGG - chr4.2:87733231-87733250 None:intergenic 40.0%
GGTAAAACGGTTGGCATTAT+TGG + chr4.2:87734205-87734224 MS.gene33395:CDS 40.0%
GGTAATCACATATGCGGAAA+AGG - chr4.2:87732094-87732113 None:intergenic 40.0%
GTTTGGATTGAAAGCGAGAA+TGG - chr4.2:87733518-87733537 None:intergenic 40.0%
TAAACCAAGGGAGTTAACAG+TGG - chr4.2:87734697-87734716 None:intergenic 40.0%
TACCTCGACCGATGTTAATT+AGG - chr4.2:87734456-87734475 None:intergenic 40.0%
TATTGATGCACTACCAAAGC+TGG + chr4.2:87732199-87732218 MS.gene33395:CDS 40.0%
TGACCTTGTTCTTGGAAACT+TGG + chr4.2:87734651-87734670 MS.gene33395:CDS 40.0%
TGATGCTTACACTTCTTAGG+AGG + chr4.2:87732348-87732367 MS.gene33395:CDS 40.0%
TGATTGTATGTTGGGATTGG+CGG + chr4.2:87732668-87732687 MS.gene33395:intron 40.0%
TTCCTAATTAACATCGGTCG+AGG + chr4.2:87734451-87734470 MS.gene33395:CDS 40.0%
TTCTAGCCCAAATAGCTCTT+CGG - chr4.2:87734572-87734591 None:intergenic 40.0%
TTCTGGACCTCTAATGGAAA+TGG + chr4.2:87733796-87733815 MS.gene33395:intron 40.0%
TTTGCGGGTAATCACATATG+CGG - chr4.2:87732100-87732119 None:intergenic 40.0%
! AAACCATACCGGTTAATGAC+TGG - chr4.2:87733022-87733041 None:intergenic 40.0%
! CAAAAGCTACAATGGCTTTG+GGG - chr4.2:87732607-87732626 None:intergenic 40.0%
! CACACATGCTGATTGTATGT+TGG + chr4.2:87732659-87732678 MS.gene33395:intron 40.0%
! GAGTTAACAGTGGTTTTCCA+AGG - chr4.2:87734687-87734706 None:intergenic 40.0%
! TGCTGATTGTATGTTGGGAT+TGG + chr4.2:87732665-87732684 MS.gene33395:intron 40.0%
! TTTAAGCCTTGTCGTGATCA+CGG + chr4.2:87732481-87732500 MS.gene33395:intron 40.0%
!! GATGTTGCTGATTTGGCTAT+TGG + chr4.2:87732323-87732342 MS.gene33395:CDS 40.0%
!! GATTTGTTAGAAGTGGAGAC+TGG + chr4.2:87732387-87732406 MS.gene33395:CDS 40.0%
!! TTGGTGGTTTGTTATAGGGA+TGG + chr4.2:87733158-87733177 MS.gene33395:intron 40.0%
!!! AGTTTTAGAGGTCTCTGGAA+TGG + chr4.2:87732853-87732872 MS.gene33395:intron 40.0%
!!! TTTTGTGGTGACGGTAAGAT+TGG - chr4.2:87732789-87732808 None:intergenic 40.0%
AACCCGTCACATCATCAATC+GGG + chr4.2:87734399-87734418 MS.gene33395:CDS 45.0%
AACTTGGAGGCTCATTTCCT+TGG + chr4.2:87734667-87734686 MS.gene33395:CDS 45.0%
AATAGCTCTTCGGGAACATG+AGG - chr4.2:87734562-87734581 None:intergenic 45.0%
ACAAACCAAGTCACACAGCT+TGG - chr4.2:87733885-87733904 None:intergenic 45.0%
ACATCGTCAGTCAACACATC+AGG - chr4.2:87732308-87732327 None:intergenic 45.0%
AGCTAGGAGGAGAACATCTA+TGG - chr4.2:87732027-87732046 None:intergenic 45.0%
ATCAATGCACTTGGTCCGAA+GGG + chr4.2:87734427-87734446 MS.gene33395:CDS 45.0%
ATTGTTTCGAGCTTCAGCGT+TGG + chr4.2:87732224-87732243 MS.gene33395:CDS 45.0%
CAGTTCTCTGGTAAAACGGT+TGG + chr4.2:87734196-87734215 MS.gene33395:intron 45.0%
CATGTGTACATCCCAGAAAC+AGG + chr4.2:87733859-87733878 MS.gene33395:intron 45.0%
CATGTTCCCGAAGAGCTATT+TGG + chr4.2:87734562-87734581 MS.gene33395:CDS 45.0%
CCTCCAAGTTTCCAAGAACA+AGG - chr4.2:87734657-87734676 None:intergenic 45.0%
CCTTGTTCTTGGAAACTTGG+AGG + chr4.2:87734654-87734673 MS.gene33395:CDS 45.0%
CTCGAAACAATCTCCAGCTT+TGG - chr4.2:87732215-87732234 None:intergenic 45.0%
GATTGGCGGTGAGTTTAACA+AGG + chr4.2:87732682-87732701 MS.gene33395:intron 45.0%
GCAATTGCCAAAAGAGCTGA+AGG + chr4.2:87734247-87734266 MS.gene33395:CDS 45.0%
TCGTCGTCTTGTCATGATCA+TGG + chr4.2:87732504-87732523 MS.gene33395:intron 45.0%
TCTAGCCCAAATAGCTCTTC+GGG - chr4.2:87734571-87734590 None:intergenic 45.0%
TGAGTTAGGCAAAATCAGGG+CGG + chr4.2:87733425-87733444 MS.gene33395:intron 45.0%
TGGATTGAAAGCGAGAATGG+TGG - chr4.2:87733515-87733534 None:intergenic 45.0%
TTGGCACTCATAGTGTCGTA+TGG + chr4.2:87733082-87733101 MS.gene33395:intron 45.0%
! ATTATTGGGCTGGGAAGGAT+TGG + chr4.2:87734220-87734239 MS.gene33395:CDS 45.0%
! GACTGACGATGTTGCTGATT+TGG + chr4.2:87732316-87732335 MS.gene33395:CDS 45.0%
!! AGTAAGGGAGTACTTGAGCT+AGG - chr4.2:87732043-87732062 None:intergenic 45.0%
AACGGTTGGCATTATTGGGC+TGG + chr4.2:87734210-87734229 MS.gene33395:CDS 50.0%
ACGGTTGGCATTATTGGGCT+GGG + chr4.2:87734211-87734230 MS.gene33395:CDS 50.0%
AGAAGTGGAGACTGGAAGCA+TGG + chr4.2:87732395-87732414 MS.gene33395:CDS 50.0%
AGGCCAGTCATTAACCGGTA+TGG + chr4.2:87733016-87733035 MS.gene33395:intron 50.0%
CATCAATGCACTTGGTCCGA+AGG + chr4.2:87734426-87734445 MS.gene33395:CDS 50.0%
GCACTCCTTGAAGGTCGTTT+GGG + chr4.2:87734505-87734524 MS.gene33395:CDS 50.0%
GGTAGAAACTCGAACTGCCA+TGG + chr4.2:87734627-87734646 MS.gene33395:CDS 50.0%
GGTTTCCTCTGTAAGAGAGC+AGG - chr4.2:87734383-87734402 None:intergenic 50.0%
GTTGGAAAATGGCAGGGAAG+AGG - chr4.2:87734155-87734174 None:intergenic 50.0%
TCCAAGAACAAGGTCAGCCA+TGG - chr4.2:87734647-87734666 None:intergenic 50.0%
TGCACTCCTTGAAGGTCGTT+TGG + chr4.2:87734504-87734523 MS.gene33395:CDS 50.0%
TGTTGCCTGCTCTCTTACAG+AGG + chr4.2:87734375-87734394 MS.gene33395:CDS 50.0%
TTGCTGCCTCATGTTGGAAG+CGG + chr4.2:87734601-87734620 MS.gene33395:CDS 50.0%
! ACACAGCTTGGCCTGTTTCT+GGG - chr4.2:87733873-87733892 None:intergenic 50.0%
! GTTGTGTTGCTGCCTCATGT+TGG + chr4.2:87734595-87734614 MS.gene33395:CDS 50.0%
! TTGGCATTATTGGGCTGGGA+AGG + chr4.2:87734215-87734234 MS.gene33395:CDS 50.0%
!! AAGGGAGTACTTGAGCTAGG+AGG - chr4.2:87732040-87732059 None:intergenic 50.0%
!! CCTCCCGATTGATGATGTGA+CGG - chr4.2:87734405-87734424 None:intergenic 50.0%
!! CTCCCGATTGATGATGTGAC+GGG - chr4.2:87734404-87734423 None:intergenic 50.0%
AAGCTCAGAATCAACGCCGG+AGG - chr4.2:87732180-87732199 None:intergenic 55.0%
ACAGGCCAAGCTGTGTGACT+TGG + chr4.2:87733877-87733896 MS.gene33395:intron 55.0%
CACACAGCTTGGCCTGTTTC+TGG - chr4.2:87733874-87733893 None:intergenic 55.0%
CCGTCACATCATCAATCGGG+AGG + chr4.2:87734402-87734421 MS.gene33395:CDS 55.0%
CGGGAGGTCATCAATGCACT+TGG + chr4.2:87734418-87734437 MS.gene33395:CDS 55.0%
CTCCACCCAAACGACCTTCA+AGG - chr4.2:87734513-87734532 None:intergenic 55.0%
CTCCTTGAAGGTCGTTTGGG+TGG + chr4.2:87734508-87734527 MS.gene33395:CDS 55.0%
CTGGTCTCTGCACTCCTTGA+AGG + chr4.2:87734496-87734515 MS.gene33395:CDS 55.0%
GCCATGGCTGACCTTGTTCT+TGG + chr4.2:87734643-87734662 MS.gene33395:CDS 55.0%
GGTAATCACAGCGGCATCAC+AGG + chr4.2:87733617-87733636 MS.gene33395:intron 55.0%
! GCATGTTGATGAGCCAGAGC+TGG + chr4.2:87734477-87734496 MS.gene33395:CDS 55.0%
CGACGACCGTGATCACGACA+AGG - chr4.2:87732490-87732509 None:intergenic 60.0%
GAAGGTCGTTTGGGTGGAGC+TGG + chr4.2:87734514-87734533 MS.gene33395:CDS 60.0%
GCCTCATGTTGGAAGCGGCA+CGG + chr4.2:87734606-87734625 MS.gene33395:CDS 60.0%
! ACATGGCGCGTTGATCCGTG+CGG + chr4.2:87732139-87732158 MS.gene33395:CDS 60.0%
! AGGAGTGCAGAGACCAGCTC+TGG - chr4.2:87734493-87734512 None:intergenic 60.0%
!! ACCGTGCCGCTTCCAACATG+AGG - chr4.2:87734610-87734629 None:intergenic 60.0%
ATCCGCTTCCCACCACCGCA+CGG - chr4.2:87732157-87732176 None:intergenic 65.0%
! GCGTTGATCCGTGCGGTGGT+GGG + chr4.2:87732146-87732165 MS.gene33395:CDS 65.0%
! GTGGTGGGAAGCGGATCCTC+CGG + chr4.2:87732161-87732180 MS.gene33395:CDS 65.0%
!! ATCCGTGCGGTGGTGGGAAG+CGG + chr4.2:87732152-87732171 MS.gene33395:CDS 65.0%
! CGCGTTGATCCGTGCGGTGG+TGG + chr4.2:87732145-87732164 MS.gene33395:CDS 70.0%
! TGGCGCGTTGATCCGTGCGG+TGG + chr4.2:87732142-87732161 MS.gene33395:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 87732017 87734717 87732017 ID=MS.gene33395
chr4.2 mRNA 87732017 87734717 87732017 ID=MS.gene33395.t1;Parent=MS.gene33395
chr4.2 exon 87732017 87732439 87732017 ID=MS.gene33395.t1.exon1;Parent=MS.gene33395.t1
chr4.2 CDS 87732017 87732439 87732017 ID=cds.MS.gene33395.t1;Parent=MS.gene33395.t1
chr4.2 exon 87734199 87734717 87734199 ID=MS.gene33395.t1.exon2;Parent=MS.gene33395.t1
chr4.2 CDS 87734199 87734717 87734199 ID=cds.MS.gene33395.t1;Parent=MS.gene33395.t1
Gene Sequence

>MS.gene33395

ATGGAATCCATAGATGTTCTCCTCCTAGCTCAAGTACTCCCTTACTTAGAACAAGAACTCAAGAAACGCTACAACCTTTTCCGCATATGTGATTACCCGCAAAAATCTCAATTCTTAACTCAACATGGCGCGTTGATCCGTGCGGTGGTGGGAAGCGGATCCTCCGGCGTTGATTCTGAGCTTATTGATGCACTACCAAAGCTGGAGATTGTTTCGAGCTTCAGCGTTGGTGTTGACAAGATTGATCTTAACAAGTGTAAGGAGAAAGGGATTCGTGTTACGTATACTCCTGATGTGTTGACTGACGATGTTGCTGATTTGGCTATTGGTTTGATGCTTACACTTCTTAGGAGGATTTGTGAATGTGATCGATTTGTTAGAAGTGGAGACTGGAAGCATGGTAAATATAAGTTGACCACTAAGGTAAAACCATAATAACCAACTTTCTAATCATGGTTTTTTGTTTTAAGCCTTGTCGTGATCACGGTCGTCGTCTTGTCATGATCATGGCCGTGTCCCGATTCTTGATAATATTATGAAAAACTAGTAGTTTGACAAAGTTATGGTGGCACCGTGATTTGTTGAAACCCCAAAGCCATTGTAGCTTTTGTCAAAACAGTAGTGGTGAAACCAATATTAAAACACACATGCTGATTGTATGTTGGGATTGGCGGTGAGTTTAACAAGGTAACAGTTGCACCGTGATTTTGTTGAAACTCACAAATTATTGTAGCTTTTGTCAAAATCAAGGTAGTTTATGGTGATTTAACCAATCTTACCGTCACCACAAAAATGCACTAAAAATGTTATAGGTAGGAGCATAGTTCCAAATTAAAAGTTTTAGAGGTCTCTGGAATGGCATTACAAGACTTAAAAGTTTTATTTCCACTGTTCATTTCATCATGGTTATCTAACTCACAAGTTGACTAGCATGATCTAACGTTTATAGATAGGAAAATTGAGTTCACTTGCATACAAAATTATGTTTCAGCAAATTGAAGGCCAGTCATTAACCGGTATGGTTTAGCATTACTGAATAGAAGGATTAATCTTACCATCTGATTTTTGGCACTCATAGTGTCGTATGGTTAATTATTGACTGATAAAGACCAATGACAGAATTAGAGTTAAGAAAAAATGCTTGGTGGTTTGTTATAGGGATGGTGCTCCTTTTATATACACCAAAAAGCAAAAGCTAAAGTATCCTATAACCAAGCTCCTAAATTGATGTTGCTTTTCTTTTGCGGATTTGATATTGTGAAGAATTGTGGTCTAATAGTATTGATAAGAATAACCATTGCTTTTTGTTTCAAGTCTTGTTGCGTTTATGATCGTATAGTGAGTCATGACTCTTAATATTATGAAAAAGTAGTTGTGGTAAACTAAATGTGTATATGTGGATTGATGTTGAGTTAGGCAAAATCAGGGCGGTACTGTGATTTTGTCGAGACTTCAAACTGTAGTTTTAGCAAAATTATGGCAGCTTGCAGTTATTCCACCATTCTCGCTTTCAATCCAAACTTACACTAAAAATATTTCAAGTAGGAACATTGTTTTAAATTATGGTTTGCAACTGCAGCTGTAATATAAAAGTTTTAGAGGTAATCACAGCGGCATCACAGGCACAATTGTGACTGAATTTGTCCGCTATTTGCCACAATATAAAGGTTCGGAGTATAGTAGTGCACTTTTAGGATCCTTTATCTCGGTTTCTTGTCATAGTTATGTAACTCACATCTTGATTAACACACAATTCATACATATCAGAGTGTGAATATCTTCTGGACCTCTAATGGAAATGGAAGTTATGAATCTCGTTGAATCGCATGATATGAATTCAATCATGTGTACATCCCAGAAACAGGCCAAGCTGTGTGACTTGGTTTGTAAATGTTTTTGCTTAAAAATGGCATATTTTTATAGTCTGCAGAAGATCTACTTGTTTGCACAGATTCTTGAGATTGACAAACCACTTATTTTTCAATATTTACAATTCGTTAGCTTTCAAGATACGGCTAAAAACATTTAAAATGCGACACAATGATGTATCATGTTGTAAGGTTTGCAGAACTTCAATCATATAATTGTTTCATACTGCTCATTAAAATCGGTTATATGTATTCTCATGTAGTATTCCTCTTCCCTGCCATTTTCCAACAACAAATTAATTGTGTCTTTGCAGTTCTCTGGTAAAACGGTTGGCATTATTGGGCTGGGAAGGATTGGCACAGCAATTGCCAAAAGAGCTGAAGGTTTTAATTGTTCAATATGTTACTATTCTAGAACTCAAAAGCAGGAACCAAAATACAAGTACTACCCAAATGTTGTTGAGTTAGCATCCAACTGCGACATACTAGTTGTTGCCTGCTCTCTTACAGAGGAAACCCGTCACATCATCAATCGGGAGGTCATCAATGCACTTGGTCCGAAGGGTTTCCTAATTAACATCGGTCGAGGTAAGCATGTTGATGAGCCAGAGCTGGTCTCTGCACTCCTTGAAGGTCGTTTGGGTGGAGCTGGACTCGATGTGTTTGAAAACGAGCCTCATGTTCCCGAAGAGCTATTTGGGCTAGAAAATGTTGTGTTGCTGCCTCATGTTGGAAGCGGCACGGTAGAAACTCGAACTGCCATGGCTGACCTTGTTCTTGGAAACTTGGAGGCTCATTTCCTTGGAAAACCACTGTTAACTCCCTTGGTTTAA

Protein sequence

>MS.gene33395.t1

MESIDVLLLAQVLPYLEQELKKRYNLFRICDYPQKSQFLTQHGALIRAVVGSGSSGVDSELIDALPKLEIVSSFSVGVDKIDLNKCKEKGIRVTYTPDVLTDDVADLAIGLMLTLLRRICECDRFVRSGDWKHGKYKLTTKFSGKTVGIIGLGRIGTAIAKRAEGFNCSICYYSRTQKQEPKYKYYPNVVELASNCDILVVACSLTEETRHIINREVINALGPKGFLINIGRGKHVDEPELVSALLEGRLGGAGLDVFENEPHVPEELFGLENVVLLPHVGSGTVETRTAMADLVLGNLEAHFLGKPLLTPLV