Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33395.t1 | XP_003604495.2 | 96.5 | 313 | 11 | 0 | 1 | 313 | 343 | 655 | 4.70E-170 | 607.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33395.t1 | Q9CA90 | 74.1 | 313 | 81 | 0 | 1 | 313 | 1 | 313 | 9.1e-130 | 464.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33395.t1 | G7JJF6 | 96.5 | 313 | 11 | 0 | 1 | 313 | 1 | 313 | 3.4e-170 | 607.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33395 | MS.gene37512 | PPI |
MS.gene33395 | MS.gene065032 | PPI |
MS.gene23623 | MS.gene33395 | PPI |
MS.gene33395 | MS.gene87846 | PPI |
MS.gene33395 | MS.gene019405 | PPI |
MS.gene33395 | MS.gene37508 | PPI |
MS.gene33395 | MS.gene87848 | PPI |
MS.gene33395 | MS.gene87842 | PPI |
MS.gene33395 | MS.gene029300 | PPI |
MS.gene33395 | MS.gene37515 | PPI |
MS.gene33395 | MS.gene76198 | PPI |
MS.gene33395 | MS.gene37513 | PPI |
MS.gene33395 | MS.gene019402 | PPI |
MS.gene33395 | MS.gene23624 | PPI |
MS.gene23633 | MS.gene33395 | PPI |
MS.gene33395 | MS.gene019406 | PPI |
MS.gene33395 | MS.gene019404 | PPI |
MS.gene33395 | MS.gene74946 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33395.t1 | MTR_4g013090 | 96.486 | 313 | 11 | 0 | 1 | 313 | 1 | 313 | 0.0 | 613 |
MS.gene33395.t1 | MTR_4g013100 | 89.172 | 314 | 33 | 1 | 1 | 313 | 1 | 314 | 0.0 | 565 |
MS.gene33395.t1 | MTR_4g012960 | 87.859 | 313 | 35 | 1 | 1 | 313 | 1 | 310 | 0.0 | 563 |
MS.gene33395.t1 | MTR_4g013135 | 87.220 | 313 | 40 | 0 | 1 | 313 | 1 | 313 | 0.0 | 522 |
MS.gene33395.t1 | MTR_2g101840 | 62.102 | 314 | 118 | 1 | 1 | 313 | 1 | 314 | 8.92e-132 | 377 |
MS.gene33395.t1 | MTR_8g033390 | 45.965 | 285 | 143 | 3 | 37 | 313 | 42 | 323 | 2.96e-90 | 272 |
MS.gene33395.t1 | MTR_8g033400 | 40.656 | 305 | 171 | 3 | 16 | 313 | 32 | 333 | 4.81e-83 | 254 |
MS.gene33395.t1 | MTR_8g033410 | 39.739 | 307 | 174 | 3 | 15 | 313 | 23 | 326 | 1.34e-80 | 248 |
MS.gene33395.t1 | MTR_7g075830 | 42.593 | 270 | 140 | 4 | 57 | 312 | 46 | 314 | 3.51e-66 | 210 |
MS.gene33395.t1 | MTR_4g013040 | 75.949 | 79 | 19 | 0 | 65 | 143 | 4 | 82 | 4.34e-36 | 129 |
MS.gene33395.t1 | MTR_1g112510 | 33.333 | 285 | 164 | 7 | 49 | 308 | 66 | 349 | 6.03e-34 | 128 |
MS.gene33395.t1 | MTR_4g005880 | 29.457 | 258 | 167 | 5 | 67 | 313 | 151 | 404 | 4.55e-28 | 114 |
MS.gene33395.t1 | MTR_1g107480 | 27.365 | 296 | 199 | 6 | 30 | 313 | 80 | 371 | 5.22e-28 | 114 |
MS.gene33395.t1 | MTR_3g005970 | 27.206 | 272 | 175 | 5 | 57 | 308 | 107 | 375 | 9.01e-25 | 103 |
MS.gene33395.t1 | MTR_6g007170 | 28.244 | 262 | 171 | 5 | 57 | 306 | 111 | 367 | 9.26e-24 | 100 |
MS.gene33395.t1 | MTR_7g078990 | 24.786 | 234 | 165 | 4 | 81 | 304 | 88 | 320 | 2.09e-16 | 80.1 |
MS.gene33395.t1 | MTR_6g007175 | 25.000 | 256 | 168 | 4 | 57 | 306 | 80 | 317 | 1.23e-15 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33395.t1 | AT1G79870 | 74.121 | 313 | 81 | 0 | 1 | 313 | 1 | 313 | 7.90e-163 | 456 |
MS.gene33395.t1 | AT1G79870 | 69.329 | 313 | 77 | 1 | 1 | 313 | 1 | 294 | 5.13e-146 | 412 |
MS.gene33395.t1 | AT1G12550 | 52.347 | 277 | 131 | 1 | 37 | 312 | 44 | 320 | 2.80e-100 | 298 |
MS.gene33395.t1 | AT2G45630 | 43.728 | 279 | 155 | 2 | 37 | 313 | 60 | 338 | 3.07e-81 | 249 |
MS.gene33395.t1 | AT1G17745 | 28.283 | 297 | 199 | 5 | 30 | 313 | 107 | 402 | 6.27e-32 | 125 |
MS.gene33395.t1 | AT4G34200 | 27.986 | 293 | 201 | 5 | 30 | 313 | 86 | 377 | 2.76e-31 | 123 |
MS.gene33395.t1 | AT1G68010 | 31.338 | 284 | 171 | 4 | 49 | 308 | 66 | 349 | 8.08e-31 | 119 |
MS.gene33395.t1 | AT1G68010 | 31.636 | 275 | 164 | 4 | 49 | 299 | 66 | 340 | 2.02e-30 | 118 |
MS.gene33395.t1 | AT1G68010 | 31.228 | 285 | 171 | 5 | 49 | 308 | 66 | 350 | 4.03e-29 | 115 |
MS.gene33395.t1 | AT3G19480 | 29.730 | 259 | 165 | 7 | 67 | 313 | 109 | 362 | 2.20e-27 | 112 |
MS.gene33395.t1 | AT1G17745 | 26.006 | 323 | 200 | 7 | 30 | 313 | 107 | 429 | 5.10e-26 | 108 |
MS.gene33395.t1 | AT1G72190 | 28.958 | 259 | 154 | 5 | 57 | 295 | 105 | 353 | 5.09e-25 | 103 |
MS.gene33395.t1 | AT5G14780 | 27.203 | 261 | 183 | 3 | 57 | 310 | 95 | 355 | 2.50e-24 | 101 |
MS.gene33395.t1 | AT5G14780 | 27.203 | 261 | 183 | 3 | 57 | 310 | 83 | 343 | 2.55e-24 | 101 |
MS.gene33395.t1 | AT5G14780 | 27.203 | 261 | 183 | 3 | 57 | 310 | 109 | 369 | 3.73e-24 | 101 |
MS.gene33395.t1 | AT2G45630 | 36.441 | 118 | 74 | 1 | 37 | 153 | 60 | 177 | 6.32e-18 | 80.5 |
MS.gene33395.t1 | AT1G01510 | 23.207 | 237 | 169 | 4 | 81 | 304 | 96 | 332 | 3.12e-14 | 73.6 |
Find 90 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTAAAACGGTTGGCATTAT+TGG | 0.182597 | 4.2:+87734205 | MS.gene33395:CDS |
TTTGGGTAGTACTTGTATTT+TGG | 0.194546 | 4.2:-87734316 | None:intergenic |
ATTAAAACCTTCAGCTCTTT+TGG | 0.229484 | 4.2:-87734254 | None:intergenic |
TACCTCGACCGATGTTAATT+AGG | 0.273239 | 4.2:-87734453 | None:intergenic |
TGCACTCCTTGAAGGTCGTT+TGG | 0.280764 | 4.2:+87734504 | MS.gene33395:CDS |
CATGTTCCCGAAGAGCTATT+TGG | 0.283219 | 4.2:+87734562 | MS.gene33395:CDS |
GCCATGGCTGACCTTGTTCT+TGG | 0.291981 | 4.2:+87734643 | MS.gene33395:CDS |
GATGCTAACTCAACAACATT+TGG | 0.293329 | 4.2:-87734334 | None:intergenic |
GTTTGATGCTTACACTTCTT+AGG | 0.302322 | 4.2:+87732345 | MS.gene33395:CDS |
GACTGACGATGTTGCTGATT+TGG | 0.318415 | 4.2:+87732316 | MS.gene33395:CDS |
GTAAAACGGTTGGCATTATT+GGG | 0.321722 | 4.2:+87734206 | MS.gene33395:CDS |
TCTAGCCCAAATAGCTCTTC+GGG | 0.350761 | 4.2:-87734568 | None:intergenic |
GATGTTGCTGATTTGGCTAT+TGG | 0.367670 | 4.2:+87732323 | MS.gene33395:CDS |
TTGAGTTCTTGTTCTAAGTA+AGG | 0.368394 | 4.2:-87732056 | None:intergenic |
ATGTTCCCGAAGAGCTATTT+GGG | 0.374695 | 4.2:+87734563 | MS.gene33395:CDS |
TTCTAGCCCAAATAGCTCTT+CGG | 0.379604 | 4.2:-87734569 | None:intergenic |
AGCTAGGAGGAGAACATCTA+TGG | 0.381468 | 4.2:-87732024 | None:intergenic |
CCTTGTTCTTGGAAACTTGG+AGG | 0.385110 | 4.2:+87734654 | MS.gene33395:CDS |
CGCGTTGATCCGTGCGGTGG+TGG | 0.389537 | 4.2:+87732145 | MS.gene33395:CDS |
GCACTCCTTGAAGGTCGTTT+GGG | 0.391897 | 4.2:+87734505 | MS.gene33395:CDS |
AACTTGGAGGCTCATTTCCT+TGG | 0.395330 | 4.2:+87734667 | MS.gene33395:CDS |
AACGGTTGGCATTATTGGGC+TGG | 0.399643 | 4.2:+87734210 | MS.gene33395:CDS |
ATTGTGTCTTTGCAGTTCTC+TGG | 0.411443 | 4.2:+87734184 | MS.gene33395:intron |
ATCCGTGCGGTGGTGGGAAG+CGG | 0.412897 | 4.2:+87732152 | MS.gene33395:CDS |
CTGGTCTCTGCACTCCTTGA+AGG | 0.428194 | 4.2:+87734496 | MS.gene33395:CDS |
CTCGAAACAATCTCCAGCTT+TGG | 0.428346 | 4.2:-87732212 | None:intergenic |
TGACCTTGTTCTTGGAAACT+TGG | 0.428681 | 4.2:+87734651 | MS.gene33395:CDS |
GAAGGTCGTTTGGGTGGAGC+TGG | 0.435302 | 4.2:+87734514 | MS.gene33395:CDS |
CTTAACAAGTGTAAGGAGAA+AGG | 0.448740 | 4.2:+87732263 | MS.gene33395:CDS |
ATGCTAACTCAACAACATTT+GGG | 0.448912 | 4.2:-87734333 | None:intergenic |
AAAACCACTGTTAACTCCCT+TGG | 0.451254 | 4.2:+87734690 | MS.gene33395:CDS |
ATTATTGGGCTGGGAAGGAT+TGG | 0.452955 | 4.2:+87734220 | MS.gene33395:CDS |
CTCCACCCAAACGACCTTCA+AGG | 0.467709 | 4.2:-87734510 | None:intergenic |
GGTAATCACATATGCGGAAA+AGG | 0.474537 | 4.2:-87732091 | None:intergenic |
TTTGCAGTTCTCTGGTAAAA+CGG | 0.480038 | 4.2:+87734192 | MS.gene33395:intron |
ACGGTTGGCATTATTGGGCT+GGG | 0.485770 | 4.2:+87734211 | MS.gene33395:CDS |
TTAACAAGTGTAAGGAGAAA+GGG | 0.494005 | 4.2:+87732264 | MS.gene33395:CDS |
AAACCCGTCACATCATCAAT+CGG | 0.494601 | 4.2:+87734398 | MS.gene33395:CDS |
TATTGATGCACTACCAAAGC+TGG | 0.498698 | 4.2:+87732199 | MS.gene33395:CDS |
TGAGTTCTTGTTCTAAGTAA+GGG | 0.499475 | 4.2:-87732055 | None:intergenic |
CAGTTCTCTGGTAAAACGGT+TGG | 0.505237 | 4.2:+87734196 | MS.gene33395:intron |
GATTGATCTTAACAAGTGTA+AGG | 0.511620 | 4.2:+87732256 | MS.gene33395:CDS |
CGGGAGGTCATCAATGCACT+TGG | 0.512262 | 4.2:+87734418 | MS.gene33395:CDS |
GTGGTGGGAAGCGGATCCTC+CGG | 0.514823 | 4.2:+87732161 | MS.gene33395:CDS |
CTCCTTGAAGGTCGTTTGGG+TGG | 0.515771 | 4.2:+87734508 | MS.gene33395:CDS |
TTGGCATTATTGGGCTGGGA+AGG | 0.517587 | 4.2:+87734215 | MS.gene33395:CDS |
TGTGATCGATTTGTTAGAAG+TGG | 0.519798 | 4.2:+87732380 | MS.gene33395:CDS |
AGGAGTGCAGAGACCAGCTC+TGG | 0.522320 | 4.2:-87734490 | None:intergenic |
CATCAATGCACTTGGTCCGA+AGG | 0.522707 | 4.2:+87734426 | MS.gene33395:CDS |
ACATCGTCAGTCAACACATC+AGG | 0.529708 | 4.2:-87732305 | None:intergenic |
AGTAAGGGAGTACTTGAGCT+AGG | 0.535794 | 4.2:-87732040 | None:intergenic |
GATTTGTTAGAAGTGGAGAC+TGG | 0.538028 | 4.2:+87732387 | MS.gene33395:CDS |
TTCCTAATTAACATCGGTCG+AGG | 0.539379 | 4.2:+87734451 | MS.gene33395:CDS |
AACCCGTCACATCATCAATC+GGG | 0.545990 | 4.2:+87734399 | MS.gene33395:CDS |
GCGTTGATCCGTGCGGTGGT+GGG | 0.548090 | 4.2:+87732146 | MS.gene33395:CDS |
TAAATATAAGTTGACCACTA+AGG | 0.548484 | 4.2:+87732418 | MS.gene33395:CDS |
ATCAATGCACTTGGTCCGAA+GGG | 0.555023 | 4.2:+87734427 | MS.gene33395:CDS |
GCATGTTGATGAGCCAGAGC+TGG | 0.562230 | 4.2:+87734477 | MS.gene33395:CDS |
GCCTCATGTTGGAAGCGGCA+CGG | 0.562999 | 4.2:+87734606 | MS.gene33395:CDS |
ATGTTAATTAGGAAACCCTT+CGG | 0.565210 | 4.2:-87734442 | None:intergenic |
GGTTTCCTCTGTAAGAGAGC+AGG | 0.567739 | 4.2:-87734380 | None:intergenic |
GCAATTGCCAAAAGAGCTGA+AGG | 0.572482 | 4.2:+87734247 | MS.gene33395:CDS |
TGATGCTTACACTTCTTAGG+AGG | 0.574694 | 4.2:+87732348 | MS.gene33395:CDS |
ATTGTTTCGAGCTTCAGCGT+TGG | 0.579525 | 4.2:+87732224 | MS.gene33395:CDS |
TCCAAGAACAAGGTCAGCCA+TGG | 0.581407 | 4.2:-87734644 | None:intergenic |
TGTTGCCTGCTCTCTTACAG+AGG | 0.581856 | 4.2:+87734375 | MS.gene33395:CDS |
CCTCCAAGTTTCCAAGAACA+AGG | 0.582993 | 4.2:-87734654 | None:intergenic |
CTCCCGATTGATGATGTGAC+GGG | 0.583689 | 4.2:-87734401 | None:intergenic |
AACAACTAGTATGTCGCAGT+TGG | 0.597542 | 4.2:-87734356 | None:intergenic |
TTGCTGCCTCATGTTGGAAG+CGG | 0.600868 | 4.2:+87734601 | MS.gene33395:CDS |
CTATTCTAGAACTCAAAAGC+AGG | 0.606500 | 4.2:+87734291 | MS.gene33395:CDS |
GGTAGAAACTCGAACTGCCA+TGG | 0.612477 | 4.2:+87734627 | MS.gene33395:CDS |
AATAGCTCTTCGGGAACATG+AGG | 0.622578 | 4.2:-87734559 | None:intergenic |
TCTCAATTCTTAACTCAACA+TGG | 0.624464 | 4.2:+87732122 | MS.gene33395:CDS |
CCTCCCGATTGATGATGTGA+CGG | 0.624802 | 4.2:-87734402 | None:intergenic |
ACCGTGCCGCTTCCAACATG+AGG | 0.625427 | 4.2:-87734607 | None:intergenic |
ATCCGCTTCCCACCACCGCA+CGG | 0.626104 | 4.2:-87732154 | None:intergenic |
TTTGCGGGTAATCACATATG+CGG | 0.626467 | 4.2:-87732097 | None:intergenic |
AGAAGTGGAGACTGGAAGCA+TGG | 0.626810 | 4.2:+87732395 | MS.gene33395:CDS |
AGTCATGTAGATTAAACCAA+GGG | 0.639811 | 4.2:-87734706 | None:intergenic |
GTTGTGTTGCTGCCTCATGT+TGG | 0.642237 | 4.2:+87734595 | MS.gene33395:CDS |
TAAACCAAGGGAGTTAACAG+TGG | 0.644772 | 4.2:-87734694 | None:intergenic |
GAGTCATGTAGATTAAACCA+AGG | 0.656624 | 4.2:-87734707 | None:intergenic |
AAGGGAGTACTTGAGCTAGG+AGG | 0.665697 | 4.2:-87732037 | None:intergenic |
TGGCGCGTTGATCCGTGCGG+TGG | 0.667823 | 4.2:+87732142 | MS.gene33395:CDS |
AAGGGTTTCCTAATTAACAT+CGG | 0.671669 | 4.2:+87734445 | MS.gene33395:CDS |
CCGTCACATCATCAATCGGG+AGG | 0.679435 | 4.2:+87734402 | MS.gene33395:CDS |
AAGCTCAGAATCAACGCCGG+AGG | 0.690169 | 4.2:-87732177 | None:intergenic |
AATAAGCTCAGAATCAACGC+CGG | 0.694388 | 4.2:-87732180 | None:intergenic |
ACATGGCGCGTTGATCCGTG+CGG | 0.713860 | 4.2:+87732139 | MS.gene33395:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGTAAATATTGAAAAATAAG+TGG | - | chr4.2:87733989-87734008 | None:intergenic | 15.0% |
!! | TTCATAATATTATCAAGAAT+CGG | - | chr4.2:87732537-87732556 | None:intergenic | 15.0% |
!!! | AAATATTTTTAGTGTAAGTT+TGG | - | chr4.2:87733535-87733554 | None:intergenic | 15.0% |
!!! | TAAATGTTTTTGCTTAAAAA+TGG | + | chr4.2:87733904-87733923 | MS.gene33395:intron | 15.0% |
!! | AAATGCACTAAAAATGTTAT+AGG | + | chr4.2:87732807-87732826 | MS.gene33395:intron | 20.0% |
!! | ATATTATGAAAAAGTAGTTG+TGG | + | chr4.2:87733372-87733391 | MS.gene33395:intron | 20.0% |
!! | TCATAATATTATCAAGAATC+GGG | - | chr4.2:87732536-87732555 | None:intergenic | 20.0% |
!!! | ACACTAAAAATATTTCAAGT+AGG | + | chr4.2:87733540-87733559 | MS.gene33395:intron | 20.0% |
!!! | AGGAACATTGTTTTAAATTA+TGG | + | chr4.2:87733560-87733579 | MS.gene33395:intron | 20.0% |
!!! | ATTAATTTGTTGTTGGAAAA+TGG | - | chr4.2:87734166-87734185 | None:intergenic | 20.0% |
!!! | CTGTAATATAAAAGTTTTAG+AGG | + | chr4.2:87733596-87733615 | MS.gene33395:intron | 20.0% |
!!! | TTCCAAATTAAAAGTTTTAG+AGG | + | chr4.2:87732841-87732860 | MS.gene33395:intron | 20.0% |
! | AAAAACCATGATTAGAAAGT+TGG | - | chr4.2:87732458-87732477 | None:intergenic | 25.0% |
! | AAGAAAAGCAACATCAATTT+AGG | - | chr4.2:87733238-87733257 | None:intergenic | 25.0% |
! | AATAACCAACTTTCTAATCA+TGG | + | chr4.2:87732450-87732469 | MS.gene33395:intron | 25.0% |
! | ATGATCTAACGTTTATAGAT+AGG | + | chr4.2:87732948-87732967 | MS.gene33395:intron | 25.0% |
! | ATTATGTTTCAGCAAATTGA+AGG | + | chr4.2:87732996-87733015 | MS.gene33395:intron | 25.0% |
! | GTAAACTAAATGTGTATATG+TGG | + | chr4.2:87733394-87733413 | MS.gene33395:intron | 25.0% |
! | TAGAGTTAAGAAAAAATGCT+TGG | + | chr4.2:87733139-87733158 | MS.gene33395:intron | 25.0% |
! | TTCATACTGCTCATTAAAAT+CGG | + | chr4.2:87734105-87734124 | MS.gene33395:intron | 25.0% |
! | TTTGATATTGTGAAGAATTG+TGG | + | chr4.2:87733265-87733284 | MS.gene33395:intron | 25.0% |
!! | GATTAGAAAGTTGGTTATTA+TGG | - | chr4.2:87732449-87732468 | None:intergenic | 25.0% |
!! | GTTAAGAATTGAGATTTTTG+CGG | - | chr4.2:87732116-87732135 | None:intergenic | 25.0% |
!! | TAAATATAAGTTGACCACTA+AGG | + | chr4.2:87732418-87732437 | MS.gene33395:CDS | 25.0% |
!! | TAATCTTACCATCTGATTTT+TGG | + | chr4.2:87733063-87733082 | MS.gene33395:intron | 25.0% |
!! | TTAAGAATTGAGATTTTTGC+GGG | - | chr4.2:87732115-87732134 | None:intergenic | 25.0% |
!!! | ACATTTTTAGTGCATTTTTG+TGG | - | chr4.2:87732804-87732823 | None:intergenic | 25.0% |
!!! | AGACACAATTAATTTGTTGT+TGG | - | chr4.2:87734173-87734192 | None:intergenic | 25.0% |
!!! | ATACTTTAGCTTTTGCTTTT+TGG | - | chr4.2:87733201-87733220 | None:intergenic | 25.0% |
!!! | CTGTAGTTTTAGCAAAATTA+TGG | + | chr4.2:87733474-87733493 | MS.gene33395:intron | 25.0% |
!!! | GACCTCTAAAACTTTTAATT+TGG | - | chr4.2:87732846-87732865 | None:intergenic | 25.0% |
!!! | TGCTTTTTGGTGTATATAAA+AGG | - | chr4.2:87733188-87733207 | None:intergenic | 25.0% |
!!! | TTATTATGGTTTTACCTTAG+TGG | - | chr4.2:87732435-87732454 | None:intergenic | 25.0% |
AAGGGTTTCCTAATTAACAT+CGG | + | chr4.2:87734445-87734464 | MS.gene33395:CDS | 30.0% | |
AGACTTGAAACAAAAAGCAA+TGG | - | chr4.2:87733314-87733333 | None:intergenic | 30.0% | |
AGTTAAGAAAAAATGCTTGG+TGG | + | chr4.2:87733142-87733161 | MS.gene33395:intron | 30.0% | |
ATAACTTCCATTTCCATTAG+AGG | - | chr4.2:87733806-87733825 | None:intergenic | 30.0% | |
ATGCTAACTCAACAACATTT+GGG | - | chr4.2:87734336-87734355 | None:intergenic | 30.0% | |
ATGTTAATTAGGAAACCCTT+CGG | - | chr4.2:87734445-87734464 | None:intergenic | 30.0% | |
CAATGATGTATCATGTTGTA+AGG | + | chr4.2:87734055-87734074 | MS.gene33395:intron | 30.0% | |
CTAGTAGTTTGACAAAGTTA+TGG | + | chr4.2:87732560-87732579 | MS.gene33395:intron | 30.0% | |
CTTAACTCTAATTCTGTCAT+TGG | - | chr4.2:87733129-87733148 | None:intergenic | 30.0% | |
CTTTATATTGTGGCAAATAG+CGG | - | chr4.2:87733664-87733683 | None:intergenic | 30.0% | |
GATTGATCTTAACAAGTGTA+AGG | + | chr4.2:87732256-87732275 | MS.gene33395:CDS | 30.0% | |
GCACTAAAAATGTTATAGGT+AGG | + | chr4.2:87732811-87732830 | MS.gene33395:intron | 30.0% | |
GTCAAAATCAAGGTAGTTTA+TGG | + | chr4.2:87732755-87732774 | MS.gene33395:intron | 30.0% | |
GTTTAGCATTACTGAATAGA+AGG | + | chr4.2:87733038-87733057 | MS.gene33395:intron | 30.0% | |
TCTCAATTCTTAACTCAACA+TGG | + | chr4.2:87732122-87732141 | MS.gene33395:CDS | 30.0% | |
TGTGAGTTTCAACAAAATCA+CGG | - | chr4.2:87732719-87732738 | None:intergenic | 30.0% | |
TTAACAAGTGTAAGGAGAAA+GGG | + | chr4.2:87732264-87732283 | MS.gene33395:CDS | 30.0% | |
TTTGCCACAATATAAAGGTT+CGG | + | chr4.2:87733667-87733686 | MS.gene33395:intron | 30.0% | |
! | ATTAAAACCTTCAGCTCTTT+TGG | - | chr4.2:87734257-87734276 | None:intergenic | 30.0% |
! | TGAGTTCTTGTTCTAAGTAA+GGG | - | chr4.2:87732058-87732077 | None:intergenic | 30.0% |
! | TGTAGCTTTTGTCAAAATCA+AGG | + | chr4.2:87732745-87732764 | MS.gene33395:intron | 30.0% |
! | TTGAGTTCTTGTTCTAAGTA+AGG | - | chr4.2:87732059-87732078 | None:intergenic | 30.0% |
! | TTTGGGTAGTACTTGTATTT+TGG | - | chr4.2:87734319-87734338 | None:intergenic | 30.0% |
!! | ATTCGTTAGCTTTCAAGATA+CGG | + | chr4.2:87734009-87734028 | MS.gene33395:intron | 30.0% |
!!! | ACTTTTAGGATCCTTTATCT+CGG | + | chr4.2:87733703-87733722 | MS.gene33395:intron | 30.0% |
!!! | CAGCATGTGTGTTTTAATAT+TGG | - | chr4.2:87732650-87732669 | None:intergenic | 30.0% |
!!! | TGTTTTGACAAAAGCTACAA+TGG | - | chr4.2:87732615-87732634 | None:intergenic | 30.0% |
!!! | TTAAAAGTTTTAGAGGTCTC+TGG | + | chr4.2:87732848-87732867 | MS.gene33395:intron | 30.0% |
!!! | TTGATGTTGCTTTTCTTTTG+CGG | + | chr4.2:87733241-87733260 | MS.gene33395:intron | 30.0% |
AACCATGATGAAATGAACAG+TGG | - | chr4.2:87732905-87732924 | None:intergenic | 35.0% | |
AATATCTTCTGGACCTCTAA+TGG | + | chr4.2:87733790-87733809 | MS.gene33395:intron | 35.0% | |
ACAAAAGCTACAATGGCTTT+GGG | - | chr4.2:87732608-87732627 | None:intergenic | 35.0% | |
ATCAGAGTGTGAATATCTTC+TGG | + | chr4.2:87733779-87733798 | MS.gene33395:intron | 35.0% | |
ATGACAAGAAACCGAGATAA+AGG | - | chr4.2:87733717-87733736 | None:intergenic | 35.0% | |
ATGTTGAGTTAGGCAAAATC+AGG | + | chr4.2:87733421-87733440 | MS.gene33395:intron | 35.0% | |
CAATTTAGGAGCTTGGTTAT+AGG | - | chr4.2:87733224-87733243 | None:intergenic | 35.0% | |
CGCTATTTGCCACAATATAA+AGG | + | chr4.2:87733662-87733681 | MS.gene33395:intron | 35.0% | |
CTTAACAAGTGTAAGGAGAA+AGG | + | chr4.2:87732263-87732282 | MS.gene33395:CDS | 35.0% | |
GATGCTAACTCAACAACATT+TGG | - | chr4.2:87734337-87734356 | None:intergenic | 35.0% | |
GTAAAACGGTTGGCATTATT+GGG | + | chr4.2:87734206-87734225 | MS.gene33395:CDS | 35.0% | |
GTAGTTTGACAAAGTTATGG+TGG | + | chr4.2:87732563-87732582 | MS.gene33395:intron | 35.0% | |
GTTTGATGCTTACACTTCTT+AGG | + | chr4.2:87732345-87732364 | MS.gene33395:CDS | 35.0% | |
TACTCCGAACCTTTATATTG+TGG | - | chr4.2:87733674-87733693 | None:intergenic | 35.0% | |
TATGAGTGCCAAAAATCAGA+TGG | - | chr4.2:87733074-87733093 | None:intergenic | 35.0% | |
TATTATCAAGAATCGGGACA+CGG | - | chr4.2:87732530-87732549 | None:intergenic | 35.0% | |
TCAGTAATGCTAAACCATAC+CGG | - | chr4.2:87733033-87733052 | None:intergenic | 35.0% | |
TGTTGAGTTAGGCAAAATCA+GGG | + | chr4.2:87733422-87733441 | MS.gene33395:intron | 35.0% | |
TTCCACTGTTCATTTCATCA+TGG | + | chr4.2:87732900-87732919 | MS.gene33395:intron | 35.0% | |
TTTGCAGTTCTCTGGTAAAA+CGG | + | chr4.2:87734192-87734211 | MS.gene33395:intron | 35.0% | |
! | ACACATGCTGATTGTATGTT+GGG | + | chr4.2:87732660-87732679 | MS.gene33395:intron | 35.0% |
! | AGCTTTTGTCAAAACAGTAG+TGG | + | chr4.2:87732619-87732638 | MS.gene33395:intron | 35.0% |
! | ATGTGGATTGATGTTGAGTT+AGG | + | chr4.2:87733411-87733430 | MS.gene33395:intron | 35.0% |
! | GAGTATAGTAGTGCACTTTT+AGG | + | chr4.2:87733689-87733708 | MS.gene33395:intron | 35.0% |
! | TTAGTGCATTTTTGTGGTGA+CGG | - | chr4.2:87732798-87732817 | None:intergenic | 35.0% |
! | TTTGGGGTTTCAACAAATCA+CGG | - | chr4.2:87732591-87732610 | None:intergenic | 35.0% |
!! | AATGCTTGGTGGTTTGTTAT+AGG | + | chr4.2:87733153-87733172 | MS.gene33395:intron | 35.0% |
!! | ATGCTTGGTGGTTTGTTATA+GGG | + | chr4.2:87733154-87733173 | MS.gene33395:intron | 35.0% |
!! | ATTTGTTGTTGGAAAATGGC+AGG | - | chr4.2:87734162-87734181 | None:intergenic | 35.0% |
!! | CTATTCTAGAACTCAAAAGC+AGG | + | chr4.2:87734291-87734310 | MS.gene33395:CDS | 35.0% |
!! | TGTGATCGATTTGTTAGAAG+TGG | + | chr4.2:87732380-87732399 | MS.gene33395:CDS | 35.0% |
!! | TTTGTTGTTGGAAAATGGCA+GGG | - | chr4.2:87734161-87734180 | None:intergenic | 35.0% |
!!! | AGTTTTAGAGGTAATCACAG+CGG | + | chr4.2:87733608-87733627 | MS.gene33395:intron | 35.0% |
AAAACCACTGTTAACTCCCT+TGG | + | chr4.2:87734690-87734709 | MS.gene33395:CDS | 40.0% | |
AAACCCGTCACATCATCAAT+CGG | + | chr4.2:87734398-87734417 | MS.gene33395:CDS | 40.0% | |
AACAACTAGTATGTCGCAGT+TGG | - | chr4.2:87734359-87734378 | None:intergenic | 40.0% | |
AATAAGCTCAGAATCAACGC+CGG | - | chr4.2:87732183-87732202 | None:intergenic | 40.0% | |
ATGTTCCCGAAGAGCTATTT+GGG | + | chr4.2:87734563-87734582 | MS.gene33395:CDS | 40.0% | |
ATTGAAGGCCAGTCATTAAC+CGG | + | chr4.2:87733011-87733030 | MS.gene33395:intron | 40.0% | |
ATTGTGTCTTTGCAGTTCTC+TGG | + | chr4.2:87734184-87734203 | MS.gene33395:intron | 40.0% | |
GACAAAAGCTACAATGGCTT+TGG | - | chr4.2:87732609-87732628 | None:intergenic | 40.0% | |
GCAACATCAATTTAGGAGCT+TGG | - | chr4.2:87733231-87733250 | None:intergenic | 40.0% | |
GGTAAAACGGTTGGCATTAT+TGG | + | chr4.2:87734205-87734224 | MS.gene33395:CDS | 40.0% | |
GGTAATCACATATGCGGAAA+AGG | - | chr4.2:87732094-87732113 | None:intergenic | 40.0% | |
GTTTGGATTGAAAGCGAGAA+TGG | - | chr4.2:87733518-87733537 | None:intergenic | 40.0% | |
TAAACCAAGGGAGTTAACAG+TGG | - | chr4.2:87734697-87734716 | None:intergenic | 40.0% | |
TACCTCGACCGATGTTAATT+AGG | - | chr4.2:87734456-87734475 | None:intergenic | 40.0% | |
TATTGATGCACTACCAAAGC+TGG | + | chr4.2:87732199-87732218 | MS.gene33395:CDS | 40.0% | |
TGACCTTGTTCTTGGAAACT+TGG | + | chr4.2:87734651-87734670 | MS.gene33395:CDS | 40.0% | |
TGATGCTTACACTTCTTAGG+AGG | + | chr4.2:87732348-87732367 | MS.gene33395:CDS | 40.0% | |
TGATTGTATGTTGGGATTGG+CGG | + | chr4.2:87732668-87732687 | MS.gene33395:intron | 40.0% | |
TTCCTAATTAACATCGGTCG+AGG | + | chr4.2:87734451-87734470 | MS.gene33395:CDS | 40.0% | |
TTCTAGCCCAAATAGCTCTT+CGG | - | chr4.2:87734572-87734591 | None:intergenic | 40.0% | |
TTCTGGACCTCTAATGGAAA+TGG | + | chr4.2:87733796-87733815 | MS.gene33395:intron | 40.0% | |
TTTGCGGGTAATCACATATG+CGG | - | chr4.2:87732100-87732119 | None:intergenic | 40.0% | |
! | AAACCATACCGGTTAATGAC+TGG | - | chr4.2:87733022-87733041 | None:intergenic | 40.0% |
! | CAAAAGCTACAATGGCTTTG+GGG | - | chr4.2:87732607-87732626 | None:intergenic | 40.0% |
! | CACACATGCTGATTGTATGT+TGG | + | chr4.2:87732659-87732678 | MS.gene33395:intron | 40.0% |
! | GAGTTAACAGTGGTTTTCCA+AGG | - | chr4.2:87734687-87734706 | None:intergenic | 40.0% |
! | TGCTGATTGTATGTTGGGAT+TGG | + | chr4.2:87732665-87732684 | MS.gene33395:intron | 40.0% |
! | TTTAAGCCTTGTCGTGATCA+CGG | + | chr4.2:87732481-87732500 | MS.gene33395:intron | 40.0% |
!! | GATGTTGCTGATTTGGCTAT+TGG | + | chr4.2:87732323-87732342 | MS.gene33395:CDS | 40.0% |
!! | GATTTGTTAGAAGTGGAGAC+TGG | + | chr4.2:87732387-87732406 | MS.gene33395:CDS | 40.0% |
!! | TTGGTGGTTTGTTATAGGGA+TGG | + | chr4.2:87733158-87733177 | MS.gene33395:intron | 40.0% |
!!! | AGTTTTAGAGGTCTCTGGAA+TGG | + | chr4.2:87732853-87732872 | MS.gene33395:intron | 40.0% |
!!! | TTTTGTGGTGACGGTAAGAT+TGG | - | chr4.2:87732789-87732808 | None:intergenic | 40.0% |
AACCCGTCACATCATCAATC+GGG | + | chr4.2:87734399-87734418 | MS.gene33395:CDS | 45.0% | |
AACTTGGAGGCTCATTTCCT+TGG | + | chr4.2:87734667-87734686 | MS.gene33395:CDS | 45.0% | |
AATAGCTCTTCGGGAACATG+AGG | - | chr4.2:87734562-87734581 | None:intergenic | 45.0% | |
ACAAACCAAGTCACACAGCT+TGG | - | chr4.2:87733885-87733904 | None:intergenic | 45.0% | |
ACATCGTCAGTCAACACATC+AGG | - | chr4.2:87732308-87732327 | None:intergenic | 45.0% | |
AGCTAGGAGGAGAACATCTA+TGG | - | chr4.2:87732027-87732046 | None:intergenic | 45.0% | |
ATCAATGCACTTGGTCCGAA+GGG | + | chr4.2:87734427-87734446 | MS.gene33395:CDS | 45.0% | |
ATTGTTTCGAGCTTCAGCGT+TGG | + | chr4.2:87732224-87732243 | MS.gene33395:CDS | 45.0% | |
CAGTTCTCTGGTAAAACGGT+TGG | + | chr4.2:87734196-87734215 | MS.gene33395:intron | 45.0% | |
CATGTGTACATCCCAGAAAC+AGG | + | chr4.2:87733859-87733878 | MS.gene33395:intron | 45.0% | |
CATGTTCCCGAAGAGCTATT+TGG | + | chr4.2:87734562-87734581 | MS.gene33395:CDS | 45.0% | |
CCTCCAAGTTTCCAAGAACA+AGG | - | chr4.2:87734657-87734676 | None:intergenic | 45.0% | |
CCTTGTTCTTGGAAACTTGG+AGG | + | chr4.2:87734654-87734673 | MS.gene33395:CDS | 45.0% | |
CTCGAAACAATCTCCAGCTT+TGG | - | chr4.2:87732215-87732234 | None:intergenic | 45.0% | |
GATTGGCGGTGAGTTTAACA+AGG | + | chr4.2:87732682-87732701 | MS.gene33395:intron | 45.0% | |
GCAATTGCCAAAAGAGCTGA+AGG | + | chr4.2:87734247-87734266 | MS.gene33395:CDS | 45.0% | |
TCGTCGTCTTGTCATGATCA+TGG | + | chr4.2:87732504-87732523 | MS.gene33395:intron | 45.0% | |
TCTAGCCCAAATAGCTCTTC+GGG | - | chr4.2:87734571-87734590 | None:intergenic | 45.0% | |
TGAGTTAGGCAAAATCAGGG+CGG | + | chr4.2:87733425-87733444 | MS.gene33395:intron | 45.0% | |
TGGATTGAAAGCGAGAATGG+TGG | - | chr4.2:87733515-87733534 | None:intergenic | 45.0% | |
TTGGCACTCATAGTGTCGTA+TGG | + | chr4.2:87733082-87733101 | MS.gene33395:intron | 45.0% | |
! | ATTATTGGGCTGGGAAGGAT+TGG | + | chr4.2:87734220-87734239 | MS.gene33395:CDS | 45.0% |
! | GACTGACGATGTTGCTGATT+TGG | + | chr4.2:87732316-87732335 | MS.gene33395:CDS | 45.0% |
!! | AGTAAGGGAGTACTTGAGCT+AGG | - | chr4.2:87732043-87732062 | None:intergenic | 45.0% |
AACGGTTGGCATTATTGGGC+TGG | + | chr4.2:87734210-87734229 | MS.gene33395:CDS | 50.0% | |
ACGGTTGGCATTATTGGGCT+GGG | + | chr4.2:87734211-87734230 | MS.gene33395:CDS | 50.0% | |
AGAAGTGGAGACTGGAAGCA+TGG | + | chr4.2:87732395-87732414 | MS.gene33395:CDS | 50.0% | |
AGGCCAGTCATTAACCGGTA+TGG | + | chr4.2:87733016-87733035 | MS.gene33395:intron | 50.0% | |
CATCAATGCACTTGGTCCGA+AGG | + | chr4.2:87734426-87734445 | MS.gene33395:CDS | 50.0% | |
GCACTCCTTGAAGGTCGTTT+GGG | + | chr4.2:87734505-87734524 | MS.gene33395:CDS | 50.0% | |
GGTAGAAACTCGAACTGCCA+TGG | + | chr4.2:87734627-87734646 | MS.gene33395:CDS | 50.0% | |
GGTTTCCTCTGTAAGAGAGC+AGG | - | chr4.2:87734383-87734402 | None:intergenic | 50.0% | |
GTTGGAAAATGGCAGGGAAG+AGG | - | chr4.2:87734155-87734174 | None:intergenic | 50.0% | |
TCCAAGAACAAGGTCAGCCA+TGG | - | chr4.2:87734647-87734666 | None:intergenic | 50.0% | |
TGCACTCCTTGAAGGTCGTT+TGG | + | chr4.2:87734504-87734523 | MS.gene33395:CDS | 50.0% | |
TGTTGCCTGCTCTCTTACAG+AGG | + | chr4.2:87734375-87734394 | MS.gene33395:CDS | 50.0% | |
TTGCTGCCTCATGTTGGAAG+CGG | + | chr4.2:87734601-87734620 | MS.gene33395:CDS | 50.0% | |
! | ACACAGCTTGGCCTGTTTCT+GGG | - | chr4.2:87733873-87733892 | None:intergenic | 50.0% |
! | GTTGTGTTGCTGCCTCATGT+TGG | + | chr4.2:87734595-87734614 | MS.gene33395:CDS | 50.0% |
! | TTGGCATTATTGGGCTGGGA+AGG | + | chr4.2:87734215-87734234 | MS.gene33395:CDS | 50.0% |
!! | AAGGGAGTACTTGAGCTAGG+AGG | - | chr4.2:87732040-87732059 | None:intergenic | 50.0% |
!! | CCTCCCGATTGATGATGTGA+CGG | - | chr4.2:87734405-87734424 | None:intergenic | 50.0% |
!! | CTCCCGATTGATGATGTGAC+GGG | - | chr4.2:87734404-87734423 | None:intergenic | 50.0% |
AAGCTCAGAATCAACGCCGG+AGG | - | chr4.2:87732180-87732199 | None:intergenic | 55.0% | |
ACAGGCCAAGCTGTGTGACT+TGG | + | chr4.2:87733877-87733896 | MS.gene33395:intron | 55.0% | |
CACACAGCTTGGCCTGTTTC+TGG | - | chr4.2:87733874-87733893 | None:intergenic | 55.0% | |
CCGTCACATCATCAATCGGG+AGG | + | chr4.2:87734402-87734421 | MS.gene33395:CDS | 55.0% | |
CGGGAGGTCATCAATGCACT+TGG | + | chr4.2:87734418-87734437 | MS.gene33395:CDS | 55.0% | |
CTCCACCCAAACGACCTTCA+AGG | - | chr4.2:87734513-87734532 | None:intergenic | 55.0% | |
CTCCTTGAAGGTCGTTTGGG+TGG | + | chr4.2:87734508-87734527 | MS.gene33395:CDS | 55.0% | |
CTGGTCTCTGCACTCCTTGA+AGG | + | chr4.2:87734496-87734515 | MS.gene33395:CDS | 55.0% | |
GCCATGGCTGACCTTGTTCT+TGG | + | chr4.2:87734643-87734662 | MS.gene33395:CDS | 55.0% | |
GGTAATCACAGCGGCATCAC+AGG | + | chr4.2:87733617-87733636 | MS.gene33395:intron | 55.0% | |
! | GCATGTTGATGAGCCAGAGC+TGG | + | chr4.2:87734477-87734496 | MS.gene33395:CDS | 55.0% |
CGACGACCGTGATCACGACA+AGG | - | chr4.2:87732490-87732509 | None:intergenic | 60.0% | |
GAAGGTCGTTTGGGTGGAGC+TGG | + | chr4.2:87734514-87734533 | MS.gene33395:CDS | 60.0% | |
GCCTCATGTTGGAAGCGGCA+CGG | + | chr4.2:87734606-87734625 | MS.gene33395:CDS | 60.0% | |
! | ACATGGCGCGTTGATCCGTG+CGG | + | chr4.2:87732139-87732158 | MS.gene33395:CDS | 60.0% |
! | AGGAGTGCAGAGACCAGCTC+TGG | - | chr4.2:87734493-87734512 | None:intergenic | 60.0% |
!! | ACCGTGCCGCTTCCAACATG+AGG | - | chr4.2:87734610-87734629 | None:intergenic | 60.0% |
ATCCGCTTCCCACCACCGCA+CGG | - | chr4.2:87732157-87732176 | None:intergenic | 65.0% | |
! | GCGTTGATCCGTGCGGTGGT+GGG | + | chr4.2:87732146-87732165 | MS.gene33395:CDS | 65.0% |
! | GTGGTGGGAAGCGGATCCTC+CGG | + | chr4.2:87732161-87732180 | MS.gene33395:CDS | 65.0% |
!! | ATCCGTGCGGTGGTGGGAAG+CGG | + | chr4.2:87732152-87732171 | MS.gene33395:CDS | 65.0% |
! | CGCGTTGATCCGTGCGGTGG+TGG | + | chr4.2:87732145-87732164 | MS.gene33395:CDS | 70.0% |
! | TGGCGCGTTGATCCGTGCGG+TGG | + | chr4.2:87732142-87732161 | MS.gene33395:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 87732017 | 87734717 | 87732017 | ID=MS.gene33395 |
chr4.2 | mRNA | 87732017 | 87734717 | 87732017 | ID=MS.gene33395.t1;Parent=MS.gene33395 |
chr4.2 | exon | 87732017 | 87732439 | 87732017 | ID=MS.gene33395.t1.exon1;Parent=MS.gene33395.t1 |
chr4.2 | CDS | 87732017 | 87732439 | 87732017 | ID=cds.MS.gene33395.t1;Parent=MS.gene33395.t1 |
chr4.2 | exon | 87734199 | 87734717 | 87734199 | ID=MS.gene33395.t1.exon2;Parent=MS.gene33395.t1 |
chr4.2 | CDS | 87734199 | 87734717 | 87734199 | ID=cds.MS.gene33395.t1;Parent=MS.gene33395.t1 |
Gene Sequence |
Protein sequence |