AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33396


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33396.t1 MTR_4g013100 99.045 314 3 0 1 314 1 314 0.0 634
MS.gene33396.t1 MTR_4g013090 89.172 314 33 1 1 314 1 313 0.0 566
MS.gene33396.t1 MTR_4g012960 86.943 314 37 2 1 314 1 310 0.0 553
MS.gene33396.t1 MTR_4g013135 88.535 314 35 1 1 314 1 313 0.0 531
MS.gene33396.t1 MTR_2g101840 62.857 315 115 2 1 314 1 314 9.88e-135 385
MS.gene33396.t1 MTR_8g033390 45.390 282 149 2 38 314 42 323 1.45e-87 265
MS.gene33396.t1 MTR_8g033410 40.065 307 173 3 16 314 23 326 2.32e-81 249
MS.gene33396.t1 MTR_8g033400 39.672 305 174 3 17 314 32 333 2.66e-81 249
MS.gene33396.t1 MTR_7g075830 42.105 266 139 4 62 313 50 314 4.42e-65 207
MS.gene33396.t1 MTR_4g013040 77.215 79 18 0 66 144 4 82 6.87e-36 128
MS.gene33396.t1 MTR_1g112510 32.990 291 169 6 44 309 60 349 2.89e-33 126
MS.gene33396.t1 MTR_4g005880 29.412 255 171 4 68 314 151 404 2.21e-29 118
MS.gene33396.t1 MTR_1g107480 28.627 255 173 4 68 314 118 371 2.45e-29 118
MS.gene33396.t1 MTR_3g005970 28.295 258 162 6 59 296 108 362 2.54e-24 102
MS.gene33396.t1 MTR_6g007170 25.632 277 197 4 40 307 91 367 8.86e-22 94.7
MS.gene33396.t1 MTR_7g078990 23.932 234 167 3 82 305 88 320 2.51e-16 79.7
MS.gene33396.t1 MTR_6g007175 23.529 272 190 4 40 307 60 317 4.00e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33396.t1 AT1G79870 75.478 314 76 1 1 314 1 313 5.19e-167 466
MS.gene33396.t1 AT1G79870 70.701 314 72 2 1 314 1 294 5.30e-150 423
MS.gene33396.t1 AT1G12550 53.069 277 129 1 38 313 44 320 3.27e-102 303
MS.gene33396.t1 AT2G45630 42.230 296 168 3 22 314 43 338 2.50e-83 255
MS.gene33396.t1 AT1G68010 32.069 290 173 4 44 309 60 349 3.27e-32 123
MS.gene33396.t1 AT1G17745 30.888 259 166 5 68 314 145 402 1.28e-31 124
MS.gene33396.t1 AT1G68010 32.384 281 166 4 44 300 60 340 1.48e-31 121
MS.gene33396.t1 AT4G34200 30.196 255 169 4 68 314 124 377 1.66e-31 124
MS.gene33396.t1 AT1G68010 31.959 291 173 5 44 309 60 350 1.47e-30 119
MS.gene33396.t1 AT3G19480 30.078 256 168 6 68 314 109 362 3.86e-29 117
MS.gene33396.t1 AT1G17745 28.322 286 165 7 68 314 145 429 1.18e-25 107
MS.gene33396.t1 AT1G72190 30.435 253 156 5 59 296 106 353 2.26e-25 104
MS.gene33396.t1 AT5G14780 27.686 242 168 3 77 311 114 355 4.73e-24 100
MS.gene33396.t1 AT5G14780 27.686 242 168 3 77 311 102 343 5.18e-24 100
MS.gene33396.t1 AT5G14780 27.686 242 168 3 77 311 128 369 6.25e-24 100
MS.gene33396.t1 AT2G45630 33.333 135 88 2 22 154 43 177 4.25e-20 86.7
MS.gene33396.t1 AT5G28310 33.333 180 68 5 136 314 105 233 1.17e-18 83.6
MS.gene33396.t1 AT1G01510 22.807 228 163 3 91 305 105 332 9.70e-14 72.0

Find 97 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGTTCTTGTTCTAAGTA+TGG 0.219870 4.2:-87728275 None:intergenic
CATGTTCCTGAGGAGCTATT+TGG 0.223949 4.2:+87730913 MS.gene33396:CDS
GCTACAACCTCTTCCGCTTA+TGG 0.260804 4.2:+87728303 MS.gene33396:CDS
GACTGATGAAGTTGCTGATT+TGG 0.274964 4.2:+87728535 MS.gene33396:CDS
TACCACGGCCGATGTTAATT+AGG 0.282501 4.2:-87730804 None:intergenic
GCCATGGCTGACCTTGTTCT+TGG 0.291981 4.2:+87730994 MS.gene33396:CDS
TGCACTCGTTGAAGGTCGTT+TGG 0.294166 4.2:+87730855 MS.gene33396:CDS
GAAGTTGCTGATTTGGCTAT+TGG 0.325922 4.2:+87728542 MS.gene33396:CDS
GTTCTGGAATAGTAGGATAT+TGG 0.331013 4.2:-87730631 None:intergenic
CTACAACCTCTTCCGCTTAT+GGG 0.337685 4.2:+87728304 MS.gene33396:CDS
ATGTTCCTGAGGAGCTATTT+GGG 0.342324 4.2:+87730914 MS.gene33396:CDS
TTGACGCGCCGTGTTGAGTT+AGG 0.386120 4.2:-87728349 None:intergenic
AACCTAGAGGCTCATTTCCT+TGG 0.387843 4.2:+87731018 MS.gene33396:CDS
TGATGCTTACGCTTCTTAGA+AGG 0.390098 4.2:+87728567 MS.gene33396:CDS
ATTAAAACCTTCGGCTCTCT+TGG 0.419458 4.2:-87730605 None:intergenic
GCACTCGTTGAAGGTCGTTT+GGG 0.421415 4.2:+87730856 MS.gene33396:CDS
CTGGTCTCTGCACTCGTTGA+AGG 0.431513 4.2:+87730847 MS.gene33396:CDS
GATATGTTAGAGGTGGGAAT+TGG 0.431710 4.2:+87728606 MS.gene33396:CDS
ACCGTCGGCATTATTGGGTT+GGG 0.433408 4.2:+87730562 MS.gene33396:CDS
CGCCGTGTTGAGTTAGGAGT+TGG 0.435225 4.2:-87728343 None:intergenic
GGTGTTGATAAGATTGATCT+TGG 0.438180 4.2:+87728464 MS.gene33396:CDS
ATTATTGGGTTGGGAAGGAT+TGG 0.445098 4.2:+87730571 MS.gene33396:CDS
AAACCCATCACATCATCAAC+CGG 0.447905 4.2:+87730749 MS.gene33396:CDS
GAAGGTCGTTTGGGTGGAGC+TGG 0.449114 4.2:+87730865 MS.gene33396:CDS
TCTAGCCCAAATAGCTCCTC+AGG 0.450904 4.2:-87730919 None:intergenic
ATGTTAATTAGGAAACCCTT+TGG 0.451535 4.2:-87730793 None:intergenic
AACCGTCGGCATTATTGGGT+TGG 0.454362 4.2:+87730561 MS.gene33396:CDS
TAAGTTCTTGTTCTAAGTAT+GGG 0.462386 4.2:-87728274 None:intergenic
TATTGGACAATTAAAACCTT+CGG 0.464821 4.2:-87730614 None:intergenic
CTCGAAACGATTTCAAGCTT+CGG 0.469789 4.2:-87728431 None:intergenic
TGATGGGTTTCCTCTGTAAG+AGG 0.471334 4.2:-87730736 None:intergenic
AAAGCCACTGTTAACTCCCC+TGG 0.471371 4.2:+87731041 MS.gene33396:CDS
TGCTTCAATGAGGTCAGAAT+CGG 0.492845 4.2:-87728405 None:intergenic
CTTGGCAAGTGTAAGGAGAA+AGG 0.493276 4.2:+87728482 MS.gene33396:CDS
GATTGATCTTGGCAAGTGTA+AGG 0.493761 4.2:+87728475 MS.gene33396:CDS
CTCGTTGAAGGTCGTTTGGG+TGG 0.518253 4.2:+87730859 MS.gene33396:CDS
ACCCTAATTATGGGATCCAT+TGG 0.520511 4.2:+87728224 None:intergenic
ACTTCATCAGTCAAAACATC+AGG 0.522096 4.2:-87728524 None:intergenic
GCGTCAATCCGTGCGGTGGT+CGG 0.522401 4.2:+87728365 MS.gene33396:CDS
ACGAGTGCAGAGACCAGCTC+TGG 0.523782 4.2:-87730841 None:intergenic
GGAAATCCCATAAGCGGAAG+AGG 0.528335 4.2:-87728310 None:intergenic
GAATGTGATCGATATGTTAG+AGG 0.530505 4.2:+87728596 MS.gene33396:CDS
GCCGTGTTGAGTTAGGAGTT+GGG 0.534313 4.2:-87728342 None:intergenic
TTCCTAATTAACATCGGCCG+TGG 0.535538 4.2:+87730802 MS.gene33396:CDS
TTGGCAAGTGTAAGGAGAAA+GGG 0.537192 4.2:+87728483 MS.gene33396:CDS
CATTAACGCACTCGGTCCAA+AGG 0.544536 4.2:+87730777 MS.gene33396:CDS
CCTCCCGGTTGATGATGTGA+TGG 0.545747 4.2:-87730753 None:intergenic
AACAACTAGTATATCACAGT+TGG 0.560464 4.2:-87730707 None:intergenic
ATCGTTTCGAGCTTCAGTGT+TGG 0.560718 4.2:+87728443 MS.gene33396:CDS
ATTAACGCACTCGGTCCAAA+GGG 0.561964 4.2:+87730778 MS.gene33396:CDS
GCATGTTGATGAGCCAGAGC+TGG 0.562230 4.2:+87730828 MS.gene33396:CDS
GAGTTAACAGTGGCTTTCCA+AGG 0.564143 4.2:-87731035 None:intergenic
GGTTTCCTCTGTAAGAGGGC+AGG 0.567739 4.2:-87730731 None:intergenic
AGATACAAGGAGGACGCCAA+TGG 0.569927 4.2:-87728240 None:intergenic
TCGGCATTATTGGGTTGGGA+AGG 0.570005 4.2:+87730566 MS.gene33396:CDS
GTGATCGATATGTTAGAGGT+GGG 0.572738 4.2:+87728600 MS.gene33396:CDS
TTCCAAGGAAATGAGCCTCT+AGG 0.572892 4.2:-87731020 None:intergenic
TGTTGCCTGCCCTCTTACAG+AGG 0.573697 4.2:+87730726 MS.gene33396:CDS
GGTTGAAACTCGAACTGCCA+TGG 0.576061 4.2:+87730978 MS.gene33396:CDS
CTATTCCAGAACTCAAAAGC+AGG 0.576607 4.2:+87730642 MS.gene33396:CDS
TCCAAGAACAAGGTCAGCCA+TGG 0.581407 4.2:-87730995 None:intergenic
GATGCAAGCTCAACAACACT+TGG 0.581576 4.2:-87730685 None:intergenic
CCTCTAGGTTTCCAAGAACA+AGG 0.585248 4.2:-87731005 None:intergenic
CTCCCGGTTGATGATGTGAT+GGG 0.589362 4.2:-87730752 None:intergenic
GCAATTGCCAAGAGAGCCGA+AGG 0.593845 4.2:+87730598 MS.gene33396:CDS
TCCCAACCCAATAATGCCGA+CGG 0.594240 4.2:-87730563 None:intergenic
GCCTCATGTTGGAAGCGCCA+CGG 0.595237 4.2:+87730957 MS.gene33396:CDS
GTTGTATTGCTGCCTCATGT+TGG 0.596611 4.2:+87730946 MS.gene33396:CDS
TGATTATAAGTTGACCACTA+AGG 0.596925 4.2:+87728637 MS.gene33396:CDS
AGAGTCATCTAGCTTAAACC+AGG 0.597644 4.2:-87731059 None:intergenic
CGAGTGCGTTAATGACCTCC+CGG 0.598154 4.2:-87730768 None:intergenic
GAGTCATCTAGCTTAAACCA+GGG 0.602403 4.2:-87731058 None:intergenic
GTGGTCGGAGATGCATTCGC+CGG 0.604792 4.2:+87728380 MS.gene33396:CDS
GGATTACTTGATGAGATACA+AGG 0.605192 4.2:-87728253 None:intergenic
CGGGAGGTCATTAACGCACT+CGG 0.607092 4.2:+87730769 MS.gene33396:CDS
AATGAGGTCAGAATCGGCAC+CGG 0.609039 4.2:-87728399 None:intergenic
ATGCATCTCCGACCACCGCA+CGG 0.620236 4.2:-87728373 None:intergenic
ACCGTGGCGCTTCCAACATG+AGG 0.621456 4.2:-87730958 None:intergenic
TTTGAGGGAAATCCCATAAG+CGG 0.621788 4.2:-87728316 None:intergenic
CGGCGCGTCAATCCGTGCGG+TGG 0.622908 4.2:+87728361 MS.gene33396:CDS
AATAGCTCCTCAGGAACATG+AGG 0.635446 4.2:-87730910 None:intergenic
GATGGGTTTCCTCTGTAAGA+GGG 0.637287 4.2:-87730735 None:intergenic
TGTGATCGATATGTTAGAGG+TGG 0.638881 4.2:+87728599 MS.gene33396:CDS
AAGGGTTTCCTAATTAACAT+CGG 0.642821 4.2:+87730796 MS.gene33396:CDS
TCCCAACTCCTAACTCAACA+CGG 0.649294 4.2:+87728341 MS.gene33396:CDS
CCTTGTTCTTGGAAACCTAG+AGG 0.654183 4.2:+87731005 MS.gene33396:CDS
AACCCATCACATCATCAACC+GGG 0.665510 4.2:+87730750 MS.gene33396:CDS
AAACGAGCCTCATGTTCCTG+AGG 0.675619 4.2:+87730903 MS.gene33396:CDS
GCTTCGGCAGTGCTTCAATG+AGG 0.679340 4.2:-87728415 None:intergenic
GGCAGTTCGAGTTTCAACCG+TGG 0.681063 4.2:-87730974 None:intergenic
TAAACCAGGGGAGTTAACAG+TGG 0.689434 4.2:-87731045 None:intergenic
AGTCATCTAGCTTAAACCAG+GGG 0.699457 4.2:-87731057 None:intergenic
AGAGGTGGGAATTGGAAACG+TGG 0.731684 4.2:+87728614 MS.gene33396:CDS
ACACGGCGCGTCAATCCGTG+CGG 0.731922 4.2:+87728358 MS.gene33396:CDS
GCTCATCAACATGCTTACCA+CGG 0.732970 4.2:-87730819 None:intergenic
CCATCACATCATCAACCGGG+AGG 0.750270 4.2:+87730753 MS.gene33396:CDS
TTACTTGATGAGATACAAGG+AGG 0.773364 4.2:-87728250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTCTTTTCTTATATTT+AGG + chr4.2:87728808-87728827 MS.gene33396:intron 10.0%
!! ATATAGTTTGATTGAAATTA+CGG + chr4.2:87729111-87729130 MS.gene33396:intron 15.0%
!! CAAAAAGAAAATTAATTTCT+TGG - chr4.2:87730511-87730530 None:intergenic 15.0%
!!! AAATTAATTTTCTTTTTGTC+TGG + chr4.2:87730513-87730532 MS.gene33396:intron 15.0%
!! AAATATTTATAGTGCATGTT+TGG - chr4.2:87729077-87729096 None:intergenic 20.0%
!! AAGCTTACAAATTGTAAATA+TGG - chr4.2:87730304-87730323 None:intergenic 20.0%
!! TGATATTGTGAAAAAATTAG+CGG + chr4.2:87728842-87728861 MS.gene33396:intron 20.0%
!! TGTAAATATGGAAAAATAAG+TGG - chr4.2:87730292-87730311 None:intergenic 20.0%
!! TTTGTCATACTCATTAAAAT+TGG + chr4.2:87730408-87730427 MS.gene33396:intron 20.0%
!!! AAATCAATTGAGAAATTTTG+CGG - chr4.2:87728677-87728696 None:intergenic 20.0%
!!! ACATGCACTATAAATATTTT+AGG + chr4.2:87729078-87729097 MS.gene33396:intron 20.0%
!!! ATAAATATTTTAGGTAGGAA+AGG + chr4.2:87729087-87729106 MS.gene33396:intron 20.0%
!!! ATAAATATTTTAGGTTGGAA+AGG + chr4.2:87729544-87729563 MS.gene33396:intron 20.0%
!!! TCTTTTCTTATATTTAGGAT+CGG + chr4.2:87728813-87728832 MS.gene33396:intron 20.0%
! AACTAACACAATTGTATGTT+TGG + chr4.2:87729390-87729409 MS.gene33396:intron 25.0%
! AAGTGAAAACAAATGTCATA+AGG - chr4.2:87730134-87730153 None:intergenic 25.0%
! AGTTTACAAGTATGAGTTAA+CGG + chr4.2:87729296-87729315 MS.gene33396:intron 25.0%
! ATACAATTGTGTTAGTTGAT+TGG - chr4.2:87729387-87729406 None:intergenic 25.0%
! ATGATGAACAGTAAAGATAA+AGG - chr4.2:87729730-87729749 None:intergenic 25.0%
! TATTGGACAATTAAAACCTT+CGG - chr4.2:87730617-87730636 None:intergenic 25.0%
!! TAAGTTCTTGTTCTAAGTAT+GGG - chr4.2:87728277-87728296 None:intergenic 25.0%
!! TGATCTATCATCATGTTTTA+AGG + chr4.2:87730361-87730380 MS.gene33396:intron 25.0%
!! TTAAGTTCTTGTTCTAAGTA+TGG - chr4.2:87728278-87728297 None:intergenic 25.0%
!!! ACATGTTTTTATTGAGTCTT+CGG + chr4.2:87730227-87730246 MS.gene33396:intron 25.0%
!!! CATATATCCGATTTTTTTTG+TGG - chr4.2:87730453-87730472 None:intergenic 25.0%
!!! GATCTATCATCATGTTTTAA+GGG + chr4.2:87730362-87730381 MS.gene33396:intron 25.0%
!!! GCACTATAAATATTTTAGGT+AGG + chr4.2:87729082-87729101 MS.gene33396:intron 25.0%
!!! GCACTATAAATATTTTAGGT+TGG + chr4.2:87729082-87729101 MS.gene33396:intron 25.0%
!!! TTGTAGTGTATAAGTTTTAG+AGG + chr4.2:87729600-87729619 MS.gene33396:intron 25.0%
AACAACTAGTATATCACAGT+TGG - chr4.2:87730710-87730729 None:intergenic 30.0%
AAGGGTTTCCTAATTAACAT+CGG + chr4.2:87730796-87730815 MS.gene33396:CDS 30.0%
ACACAATTGTATGTTTGGAT+TGG + chr4.2:87729395-87729414 MS.gene33396:intron 30.0%
AGCTGTACCACAAAAAAAAT+CGG + chr4.2:87730443-87730462 MS.gene33396:intron 30.0%
ATGTTAATTAGGAAACCCTT+TGG - chr4.2:87730796-87730815 None:intergenic 30.0%
ATTTCTTGGTTGAAAATGCA+TGG - chr4.2:87730497-87730516 None:intergenic 30.0%
ATTTGTAAGCTTGCAGAAAA+CGG + chr4.2:87730312-87730331 MS.gene33396:intron 30.0%
CTAACTCAATTGAAGTTGTA+TGG + chr4.2:87729837-87729856 MS.gene33396:intron 30.0%
GAGATTCAGCAAATTGAATT+GGG - chr4.2:87730020-87730039 None:intergenic 30.0%
GAGCATAGTATTACTCTATT+AGG + chr4.2:87729702-87729721 MS.gene33396:intron 30.0%
TATTGTGAAAAAATTAGCGG+TGG + chr4.2:87728845-87728864 MS.gene33396:intron 30.0%
TGAGATTCAGCAAATTGAAT+TGG - chr4.2:87730021-87730040 None:intergenic 30.0%
TTTATAGTGCATGTTTGGAT+TGG - chr4.2:87729072-87729091 None:intergenic 30.0%
TTTCTTGGTTGAAAATGCAT+GGG - chr4.2:87730496-87730515 None:intergenic 30.0%
! AGGAACATAGTTTGAAATTG+TGG + chr4.2:87729564-87729583 MS.gene33396:intron 30.0%
! CTTTTTCCAGATTGATACAT+CGG - chr4.2:87728781-87728800 None:intergenic 30.0%
! GAGAAATTTTGCGGTTATTA+GGG - chr4.2:87728668-87728687 None:intergenic 30.0%
! TATAGCTTTTGTCAAAATCG+TGG + chr4.2:87729016-87729035 MS.gene33396:intron 30.0%
! TGAGAAATTTTGCGGTTATT+AGG - chr4.2:87728669-87728688 None:intergenic 30.0%
! TGATTATAAGTTGACCACTA+AGG + chr4.2:87728637-87728656 MS.gene33396:CDS 30.0%
! TTATTAGGGTTTTACCTTAG+TGG - chr4.2:87728654-87728673 None:intergenic 30.0%
! TTCTTATATTTAGGATCGGA+GGG + chr4.2:87728817-87728836 MS.gene33396:intron 30.0%
! TTTCTTATATTTAGGATCGG+AGG + chr4.2:87728816-87728835 MS.gene33396:intron 30.0%
!! ATTCAATTTGCTGAATCTCA+TGG + chr4.2:87730021-87730040 MS.gene33396:intron 30.0%
!!! GATTTGCATTTTTAGTCTTG+TGG + chr4.2:87728692-87728711 MS.gene33396:intron 30.0%
AACCAATGTAGAAACACACT+TGG + chr4.2:87728871-87728890 MS.gene33396:intron 35.0%
AATCACAATTGTGGCTACAT+CGG + chr4.2:87729188-87729207 MS.gene33396:intron 35.0%
AATCACAATTGTGGCTACAT+TGG + chr4.2:87729188-87729207 MS.gene33396:intron 35.0%
AATCTCAGTTGAATCATGGT+GGG + chr4.2:87730058-87730077 MS.gene33396:intron 35.0%
ACTTCATCAGTCAAAACATC+AGG - chr4.2:87728527-87728546 None:intergenic 35.0%
CTTGATATTGCAGCAAAATG+AGG - chr4.2:87729224-87729243 None:intergenic 35.0%
CTTGTAAACTTGTGAGTTAG+TGG - chr4.2:87729286-87729305 None:intergenic 35.0%
GAAAAACCGATGTATCAATC+TGG + chr4.2:87728772-87728791 MS.gene33396:intron 35.0%
GAATGTGATCGATATGTTAG+AGG + chr4.2:87728596-87728615 MS.gene33396:CDS 35.0%
GGATTACTTGATGAGATACA+AGG - chr4.2:87728256-87728275 None:intergenic 35.0%
TGGTGATTGTATGTTTGGAT+TGG + chr4.2:87728891-87728910 MS.gene33396:intron 35.0%
TGTGAATCTCAGTTGAATCA+TGG + chr4.2:87730054-87730073 MS.gene33396:intron 35.0%
TTACAAGTATGAGTTAACGG+TGG + chr4.2:87729299-87729318 MS.gene33396:intron 35.0%
TTACTTGATGAGATACAAGG+AGG - chr4.2:87728253-87728272 None:intergenic 35.0%
! ACACTTGGTGATTGTATGTT+TGG + chr4.2:87728886-87728905 MS.gene33396:intron 35.0%
! AGCTTTTGTCAAAATCGTAG+TGG + chr4.2:87729356-87729375 MS.gene33396:intron 35.0%
! CAATTGTATGTTTGGATTGG+TGG + chr4.2:87729398-87729417 MS.gene33396:intron 35.0%
! CTCATTTTGCTGCAATATCA+AGG + chr4.2:87729222-87729241 MS.gene33396:intron 35.0%
! TTAGGAGTTGGGATTTTTGA+GGG - chr4.2:87728334-87728353 None:intergenic 35.0%
!! GGTGTTGATAAGATTGATCT+TGG + chr4.2:87728464-87728483 MS.gene33396:CDS 35.0%
!! GTTCTGGAATAGTAGGATAT+TGG - chr4.2:87730634-87730653 None:intergenic 35.0%
!! TCGCAGTGTATAAGTTTTAG+AGG + chr4.2:87729147-87729166 MS.gene33396:intron 35.0%
!!! AGTTTTAGAGGTCTCTACAA+CGG + chr4.2:87729159-87729178 MS.gene33396:intron 35.0%
!!! CTTTTGAGTTCTGGAATAGT+AGG - chr4.2:87730641-87730660 None:intergenic 35.0%
AAACCCATCACATCATCAAC+CGG + chr4.2:87730749-87730768 MS.gene33396:CDS 40.0%
AGAAACCAAGTCGTTCAACT+CGG - chr4.2:87730101-87730120 None:intergenic 40.0%
ATGTTCCTGAGGAGCTATTT+GGG + chr4.2:87730914-87730933 MS.gene33396:CDS 40.0%
ATTAAAACCTTCGGCTCTCT+TGG - chr4.2:87730608-87730627 None:intergenic 40.0%
CGGCAATACAATCACAATTG+TGG + chr4.2:87729179-87729198 MS.gene33396:intron 40.0%
CTATTCCAGAACTCAAAAGC+AGG + chr4.2:87730642-87730661 MS.gene33396:CDS 40.0%
CTCGAAACGATTTCAAGCTT+CGG - chr4.2:87728434-87728453 None:intergenic 40.0%
CTTGACATTGCAGCAAAATG+AGG - chr4.2:87729677-87729696 None:intergenic 40.0%
GAAAAACCGTCGGCATTATT+GGG + chr4.2:87730557-87730576 MS.gene33396:CDS 40.0%
GAATCTCAGTTGAATCATGG+TGG + chr4.2:87730057-87730076 MS.gene33396:intron 40.0%
GATATGTTAGAGGTGGGAAT+TGG + chr4.2:87728606-87728625 MS.gene33396:CDS 40.0%
GATTGATCTTGGCAAGTGTA+AGG + chr4.2:87728475-87728494 MS.gene33396:CDS 40.0%
GCATGAATCGTAAGATAGTG+AGG - chr4.2:87729913-87729932 None:intergenic 40.0%
GGAAGTTCTACTTGTTTGCA+TGG + chr4.2:87730248-87730267 MS.gene33396:intron 40.0%
GTGATCGATATGTTAGAGGT+GGG + chr4.2:87728600-87728619 MS.gene33396:CDS 40.0%
GTGGTAAGATTGATGGAATC+AGG - chr4.2:87729050-87729069 None:intergenic 40.0%
TGAGTTTGGAAAAGTCTGAG+TGG + chr4.2:87729421-87729440 MS.gene33396:intron 40.0%
TGATGCTTACGCTTCTTAGA+AGG + chr4.2:87728567-87728586 MS.gene33396:CDS 40.0%
TGCTTCAATGAGGTCAGAAT+CGG - chr4.2:87728408-87728427 None:intergenic 40.0%
TGTGATCGATATGTTAGAGG+TGG + chr4.2:87728599-87728618 MS.gene33396:CDS 40.0%
TTGCTGAATCTCATGGAGTT+GGG + chr4.2:87730028-87730047 MS.gene33396:intron 40.0%
TTGGCAAGTGTAAGGAGAAA+GGG + chr4.2:87728483-87728502 MS.gene33396:CDS 40.0%
TTTGAGGGAAATCCCATAAG+CGG - chr4.2:87728319-87728338 None:intergenic 40.0%
TTTGCTGAATCTCATGGAGT+TGG + chr4.2:87730027-87730046 MS.gene33396:intron 40.0%
! ATAGTGCATGTTTGGATTGG+TGG - chr4.2:87729069-87729088 None:intergenic 40.0%
! CACCAAGTGTGTTTCTACAT+TGG - chr4.2:87728876-87728895 None:intergenic 40.0%
! CTCATTTTGCTGCAATGTCA+AGG + chr4.2:87729675-87729694 MS.gene33396:intron 40.0%
! GACTGATGAAGTTGCTGATT+TGG + chr4.2:87728535-87728554 MS.gene33396:CDS 40.0%
! GTATTTTCCTTGCAGTTCTC+TGG + chr4.2:87730535-87730554 MS.gene33396:intron 40.0%
! GTTAGGAGTTGGGATTTTTG+AGG - chr4.2:87728335-87728354 None:intergenic 40.0%
!! ATTATTGGGTTGGGAAGGAT+TGG + chr4.2:87730571-87730590 MS.gene33396:CDS 40.0%
!! GAAGTTGCTGATTTGGCTAT+TGG + chr4.2:87728542-87728561 MS.gene33396:CDS 40.0%
!! TGGATTGGTGGTAAGATTGA+TGG - chr4.2:87729057-87729076 None:intergenic 40.0%
!!! AGTTTTAGAGGTCTCTGCAA+CGG + chr4.2:87729612-87729631 MS.gene33396:intron 40.0%
AACCCATCACATCATCAACC+GGG + chr4.2:87730750-87730769 MS.gene33396:CDS 45.0%
AACCTAGAGGCTCATTTCCT+TGG + chr4.2:87731018-87731037 MS.gene33396:CDS 45.0%
AATAGCTCCTCAGGAACATG+AGG - chr4.2:87730913-87730932 None:intergenic 45.0%
ATCGTTTCGAGCTTCAGTGT+TGG + chr4.2:87728443-87728462 MS.gene33396:CDS 45.0%
ATTAACGCACTCGGTCCAAA+GGG + chr4.2:87730778-87730797 MS.gene33396:CDS 45.0%
CATGTTCCTGAGGAGCTATT+TGG + chr4.2:87730913-87730932 MS.gene33396:CDS 45.0%
CCTCTAGGTTTCCAAGAACA+AGG - chr4.2:87731008-87731027 None:intergenic 45.0%
CCTTGTTCTTGGAAACCTAG+AGG + chr4.2:87731005-87731024 MS.gene33396:CDS 45.0%
CTACAACCTCTTCCGCTTAT+GGG + chr4.2:87728304-87728323 MS.gene33396:CDS 45.0%
CTTGGCAAGTGTAAGGAGAA+AGG + chr4.2:87728482-87728501 MS.gene33396:CDS 45.0%
CTTGGTTGAAAATGCATGGG+TGG - chr4.2:87730493-87730512 None:intergenic 45.0%
GAGCATAGTAGTGCTCTGTT+AGG + chr4.2:87729249-87729268 MS.gene33396:intron 45.0%
GAGTTAACAGTGGCTTTCCA+AGG - chr4.2:87731038-87731057 None:intergenic 45.0%
GATGCAAGCTCAACAACACT+TGG - chr4.2:87730688-87730707 None:intergenic 45.0%
GCTCATCAACATGCTTACCA+CGG - chr4.2:87730822-87730841 None:intergenic 45.0%
GGAAAAACCGTCGGCATTAT+TGG + chr4.2:87730556-87730575 MS.gene33396:CDS 45.0%
GTTGTATTGCTGCCTCATGT+TGG + chr4.2:87730946-87730965 MS.gene33396:CDS 45.0%
TAAACCAGGGGAGTTAACAG+TGG - chr4.2:87731048-87731067 None:intergenic 45.0%
TACCACGGCCGATGTTAATT+AGG - chr4.2:87730807-87730826 None:intergenic 45.0%
TCCCAACTCCTAACTCAACA+CGG + chr4.2:87728341-87728360 MS.gene33396:CDS 45.0%
TTCCAAGGAAATGAGCCTCT+AGG - chr4.2:87731023-87731042 None:intergenic 45.0%
TTCCTAATTAACATCGGCCG+TGG + chr4.2:87730802-87730821 MS.gene33396:CDS 45.0%
! AGTGGTTTGTCAAACTCGAG+AGG - chr4.2:87730274-87730293 None:intergenic 45.0%
! CAGTTCTCTGGAAAAACCGT+CGG + chr4.2:87730547-87730566 MS.gene33396:intron 45.0%
! GATGGGTTTCCTCTGTAAGA+GGG - chr4.2:87730738-87730757 None:intergenic 45.0%
! GGTTTTTCCAGAGAACTGCA+AGG - chr4.2:87730545-87730564 None:intergenic 45.0%
!! GTTTGGATTGGTGGTGAGTT+TGG + chr4.2:87729407-87729426 MS.gene33396:intron 45.0%
!! TGATGGGTTTCCTCTGTAAG+AGG - chr4.2:87730739-87730758 None:intergenic 45.0%
!!! TGACTCCTGCTTTTGAGTTC+TGG - chr4.2:87730650-87730669 None:intergenic 45.0%
!!! AATAATTTTTACTTATATTT+AGG - chr4.2:87728739-87728758 None:intergenic 5.0%
AAACGAGCCTCATGTTCCTG+AGG + chr4.2:87730903-87730922 MS.gene33396:CDS 50.0%
AAAGCCACTGTTAACTCCCC+TGG + chr4.2:87731041-87731060 MS.gene33396:CDS 50.0%
AACCGTCGGCATTATTGGGT+TGG + chr4.2:87730561-87730580 MS.gene33396:CDS 50.0%
AATGAGGTCAGAATCGGCAC+CGG - chr4.2:87728402-87728421 None:intergenic 50.0%
ACCGTCGGCATTATTGGGTT+GGG + chr4.2:87730562-87730581 MS.gene33396:CDS 50.0%
AGAGGTGGGAATTGGAAACG+TGG + chr4.2:87728614-87728633 MS.gene33396:CDS 50.0%
AGATACAAGGAGGACGCCAA+TGG - chr4.2:87728243-87728262 None:intergenic 50.0%
CATTAACGCACTCGGTCCAA+AGG + chr4.2:87730777-87730796 MS.gene33396:CDS 50.0%
CGAGTTTGGCAAAGTCACAG+TGG + chr4.2:87728917-87728936 MS.gene33396:intron 50.0%
GCACTCGTTGAAGGTCGTTT+GGG + chr4.2:87730856-87730875 MS.gene33396:CDS 50.0%
GCCGTGTTGAGTTAGGAGTT+GGG - chr4.2:87728345-87728364 None:intergenic 50.0%
GCTACAACCTCTTCCGCTTA+TGG + chr4.2:87728303-87728322 MS.gene33396:CDS 50.0%
GGAAATCCCATAAGCGGAAG+AGG - chr4.2:87728313-87728332 None:intergenic 50.0%
GGTTGAAACTCGAACTGCCA+TGG + chr4.2:87730978-87730997 MS.gene33396:CDS 50.0%
TCCAAGAACAAGGTCAGCCA+TGG - chr4.2:87730998-87731017 None:intergenic 50.0%
TCCCAACCCAATAATGCCGA+CGG - chr4.2:87730566-87730585 None:intergenic 50.0%
TCTAGCCCAAATAGCTCCTC+AGG - chr4.2:87730922-87730941 None:intergenic 50.0%
TGCACTCGTTGAAGGTCGTT+TGG + chr4.2:87730855-87730874 MS.gene33396:CDS 50.0%
! GTTCAACTCGGCCTGTTTCT+GGG - chr4.2:87730089-87730108 None:intergenic 50.0%
!! CTCCCGGTTGATGATGTGAT+GGG - chr4.2:87730755-87730774 None:intergenic 50.0%
!! GTTTGGATTGGCAGCGAGTT+TGG + chr4.2:87728903-87728922 MS.gene33396:intron 50.0%
!! TCGGCATTATTGGGTTGGGA+AGG + chr4.2:87730566-87730585 MS.gene33396:CDS 50.0%
CCATCACATCATCAACCGGG+AGG + chr4.2:87730753-87730772 MS.gene33396:CDS 55.0%
CGAGTGCGTTAATGACCTCC+CGG - chr4.2:87730771-87730790 None:intergenic 55.0%
CGCCGTGTTGAGTTAGGAGT+TGG - chr4.2:87728346-87728365 None:intergenic 55.0%
CGGGAGGTCATTAACGCACT+CGG + chr4.2:87730769-87730788 MS.gene33396:CDS 55.0%
CGTTCAACTCGGCCTGTTTC+TGG - chr4.2:87730090-87730109 None:intergenic 55.0%
CTCGTTGAAGGTCGTTTGGG+TGG + chr4.2:87730859-87730878 MS.gene33396:CDS 55.0%
CTGGTCTCTGCACTCGTTGA+AGG + chr4.2:87730847-87730866 MS.gene33396:CDS 55.0%
GCAATTGCCAAGAGAGCCGA+AGG + chr4.2:87730598-87730617 MS.gene33396:CDS 55.0%
GCCATGGCTGACCTTGTTCT+TGG + chr4.2:87730994-87731013 MS.gene33396:CDS 55.0%
GCTTCGGCAGTGCTTCAATG+AGG - chr4.2:87728418-87728437 None:intergenic 55.0%
GGTGGGTACATCCCAGAAAC+AGG + chr4.2:87730075-87730094 MS.gene33396:intron 55.0%
GGTTTCCTCTGTAAGAGGGC+AGG - chr4.2:87730734-87730753 None:intergenic 55.0%
TGTTGCCTGCCCTCTTACAG+AGG + chr4.2:87730726-87730745 MS.gene33396:CDS 55.0%
TTGACGCGCCGTGTTGAGTT+AGG - chr4.2:87728352-87728371 None:intergenic 55.0%
! ACAGGCCGAGTTGAACGACT+TGG + chr4.2:87730093-87730112 MS.gene33396:intron 55.0%
! GCATGTTGATGAGCCAGAGC+TGG + chr4.2:87730828-87730847 MS.gene33396:CDS 55.0%
! GGCAGTTCGAGTTTCAACCG+TGG - chr4.2:87730977-87730996 None:intergenic 55.0%
!! CCTCCCGGTTGATGATGTGA+TGG - chr4.2:87730756-87730775 None:intergenic 55.0%
ACCGTGGCGCTTCCAACATG+AGG - chr4.2:87730961-87730980 None:intergenic 60.0%
ACGAGTGCAGAGACCAGCTC+TGG - chr4.2:87730844-87730863 None:intergenic 60.0%
ATGCATCTCCGACCACCGCA+CGG - chr4.2:87728376-87728395 None:intergenic 60.0%
GAAGGTCGTTTGGGTGGAGC+TGG + chr4.2:87730865-87730884 MS.gene33396:CDS 60.0%
GTGGTCGGAGATGCATTCGC+CGG + chr4.2:87728380-87728399 MS.gene33396:CDS 60.0%
!! GCCTCATGTTGGAAGCGCCA+CGG + chr4.2:87730957-87730976 MS.gene33396:CDS 60.0%
ACACGGCGCGTCAATCCGTG+CGG + chr4.2:87728358-87728377 MS.gene33396:CDS 65.0%
GCGTCAATCCGTGCGGTGGT+CGG + chr4.2:87728365-87728384 MS.gene33396:CDS 65.0%
CGGCGCGTCAATCCGTGCGG+TGG + chr4.2:87728361-87728380 MS.gene33396:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 87728233 87731068 87728233 ID=MS.gene33396
chr4.2 mRNA 87728233 87731068 87728233 ID=MS.gene33396.t1;Parent=MS.gene33396
chr4.2 exon 87728233 87728658 87728233 ID=MS.gene33396.t1.exon1;Parent=MS.gene33396.t1
chr4.2 CDS 87728233 87728658 87728233 ID=cds.MS.gene33396.t1;Parent=MS.gene33396.t1
chr4.2 exon 87730550 87731068 87730550 ID=MS.gene33396.t1.exon2;Parent=MS.gene33396.t1
chr4.2 CDS 87730550 87731068 87730550 ID=cds.MS.gene33396.t1;Parent=MS.gene33396.t1
Gene Sequence

>MS.gene33396

ATGGGATCCATTGGCGTCCTCCTTGTATCTCATCAAGTAATCCCATACTTAGAACAAGAACTTAACAAACGCTACAACCTCTTCCGCTTATGGGATTTCCCTCAAAAATCCCAACTCCTAACTCAACACGGCGCGTCAATCCGTGCGGTGGTCGGAGATGCATTCGCCGGTGCCGATTCTGACCTCATTGAAGCACTGCCGAAGCTTGAAATCGTTTCGAGCTTCAGTGTTGGTGTTGATAAGATTGATCTTGGCAAGTGTAAGGAGAAAGGGATTCGCGTGACGAATACACCTGATGTTTTGACTGATGAAGTTGCTGATTTGGCTATTGGTTTGATGCTTACGCTTCTTAGAAGGATTTGTGAATGTGATCGATATGTTAGAGGTGGGAATTGGAAACGTGGTGATTATAAGTTGACCACTAAGGTAAAACCCTAATAACCGCAAAATTTCTCAATTGATTTGCATTTTTAGTCTTGTGGCGATTATGATCGTATTGCTGTCCTAAATATAAGTAAAAATTATTTTTCAGACTCATTGAAAAACCGATGTATCAATCTGGAAAAAGTAAAAAAAAAATTCTTTTCTTATATTTAGGATCGGAGGGAGTGATATTGTGAAAAAATTAGCGGTGGTGAAACCAATGTAGAAACACACTTGGTGATTGTATGTTTGGATTGGCAGCGAGTTTGGCAAAGTCACAGTGGCATTGTATTTTGTTGAAACTTAATAGCTAATTTAGCTTTTGTCAAAATTTGTTGAAACTCAAAACTCACAAGTTACTATAGCTTTTGTCAAAATCGTGGCAGTTCATTCTGATTCCATCAATCTTACCACCAATCCAAACATGCACTATAAATATTTTAGGTAGGAAAGGAATATAGTTTGATTGAAATTACGGTTCGCAGCTATAATCGCAGTGTATAAGTTTTAGAGGTCTCTACAACGGCAATACAATCACAATTGTGGCTACATCGGTTGCATTTGTCCTCATTTTGCTGCAATATCAAGGTTCAGAGCATAGTAGTGCTCTGTTAGGATTATTTATCTCCACTAACTCACAAGTTTACAAGTATGAGTTAACGGTGGCAATGTGATTTTGTTGAAACTTTGAAGCTACTGTAGCTTTTGTCAAAATCGTAGTGGTGATACCAATCAACTAACACAATTGTATGTTTGGATTGGTGGTGAGTTTGGAAAAGTCTGAGTGGTATGTGATTTTGTTGAAACTCAAAGCTACTATAGCTTTTGTCAAAATCGTGGCAGTTTGTCCTGATTCCATCAATCTTACCACCAATCCAAACATGCACTATAAATATTTTAGGTTGGAAAGGAACATAGTTTGAAATTGTGGTTCGCAACTATAATTGTAGTGTATAAGTTTTAGAGGTCTCTGCAACGGCAATACAATCACAATTGTGGCTACATTGGTTGCACTTGTCCTCATTTTGCTGCAATGTCAAGGTTCAGAGCATAGTATTACTCTATTAGGATCCTTTATCTTTACTGTTCATCATGATTAGCTAACTCATAAATTGACAAGTATGAGTTAACATTTCTAGATAGTAAAGTTGTGTTCGATTTCATAGAAGCTCTCGTTTTAGCTAACTCAATTGAAGTTGTATGGACTCGTTCATACACACTCTTGATCAGAATCGCAAATTTATACTCAAGTGTCCTCACTATCTTACGATTCATGCGATTCACATCTTGATTCAATATGATATCAAACACACTTGATACATATCAGAGTGTGAATTTCTTTTGAACTTCTCATCATGAATCCCAATTCAATTTGCTGAATCTCATGGAGTTGGGAGATGTGAATCTCAGTTGAATCATGGTGGGTACATCCCAGAAACAGGCCGAGTTGAACGACTTGGTTTCTAAATGTTTTTCCTTATGACATTTGTTTTCACTTTAAAAATGACATATTTTTATCGAATCTGCAGATATTCGACTTGTTTCTCGTTATGACACAATAATCTAATTGTACATGTTTTTATTGAGTCTTCGGAAGTTCTACTTGTTTGCATGGCCTCTCGAGTTTGACAAACCACTTATTTTTCCATATTTACAATTTGTAAGCTTGCAGAAAACGGTGAAAAACATTTAAAATTGAACACAATGATCTATCATCATGTTTTAAGGGTTGCAGAGCTTCAATCATACAATTTTGTCATACTCATTAAAATTGGTTATATGTCTGTAGCTGTACCACAAAAAAAATCGGATATATGTATTTTCATGCAATATTCCACCCATGCATTTTCAACCAAGAAATTAATTTTCTTTTTGTCTGGTATTTTCCTTGCAGTTCTCTGGAAAAACCGTCGGCATTATTGGGTTGGGAAGGATTGGCGAAGCAATTGCCAAGAGAGCCGAAGGTTTTAATTGTCCAATATCCTACTATTCCAGAACTCAAAAGCAGGAGTCAAAATACAAGTACTATCCAAGTGTTGTTGAGCTTGCATCCAACTGTGATATACTAGTTGTTGCCTGCCCTCTTACAGAGGAAACCCATCACATCATCAACCGGGAGGTCATTAACGCACTCGGTCCAAAGGGTTTCCTAATTAACATCGGCCGTGGTAAGCATGTTGATGAGCCAGAGCTGGTCTCTGCACTCGTTGAAGGTCGTTTGGGTGGAGCTGGACTTGATGTGTTTGAAAACGAGCCTCATGTTCCTGAGGAGCTATTTGGGCTAGAAAATGTTGTATTGCTGCCTCATGTTGGAAGCGCCACGGTTGAAACTCGAACTGCCATGGCTGACCTTGTTCTTGGAAACCTAGAGGCTCATTTCCTTGGAAAGCCACTGTTAACTCCCCTGGTTTAA

Protein sequence

>MS.gene33396.t1

MGSIGVLLVSHQVIPYLEQELNKRYNLFRLWDFPQKSQLLTQHGASIRAVVGDAFAGADSDLIEALPKLEIVSSFSVGVDKIDLGKCKEKGIRVTNTPDVLTDEVADLAIGLMLTLLRRICECDRYVRGGNWKRGDYKLTTKFSGKTVGIIGLGRIGEAIAKRAEGFNCPISYYSRTQKQESKYKYYPSVVELASNCDILVVACPLTEETHHIINREVINALGPKGFLINIGRGKHVDEPELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLLPHVGSATVETRTAMADLVLGNLEAHFLGKPLLTPLV