Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33396.t1 | AES86693.1 | 99 | 314 | 3 | 0 | 1 | 314 | 1 | 314 | 4.40E-176 | 627.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33396.t1 | Q9CA90 | 75.5 | 314 | 76 | 1 | 1 | 314 | 1 | 313 | 1.8e-133 | 476.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33396.t1 | G7JJF7 | 99.0 | 314 | 3 | 0 | 1 | 314 | 1 | 314 | 3.2e-176 | 627.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene019406 | MS.gene33396 | PPI |
MS.gene87848 | MS.gene33396 | PPI |
MS.gene23633 | MS.gene33396 | PPI |
MS.gene065032 | MS.gene33396 | PPI |
MS.gene37513 | MS.gene33396 | PPI |
MS.gene33396 | MS.gene37515 | PPI |
MS.gene33396 | MS.gene019402 | PPI |
MS.gene74946 | MS.gene33396 | PPI |
MS.gene76198 | MS.gene33396 | PPI |
MS.gene33396 | MS.gene019404 | PPI |
MS.gene87846 | MS.gene33396 | PPI |
MS.gene029300 | MS.gene33396 | PPI |
MS.gene23623 | MS.gene33396 | PPI |
MS.gene019405 | MS.gene33396 | PPI |
MS.gene33396 | MS.gene37512 | PPI |
MS.gene23624 | MS.gene33396 | PPI |
MS.gene87842 | MS.gene33396 | PPI |
MS.gene37508 | MS.gene33396 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33396.t1 | MTR_4g013100 | 99.045 | 314 | 3 | 0 | 1 | 314 | 1 | 314 | 0.0 | 634 |
MS.gene33396.t1 | MTR_4g013090 | 89.172 | 314 | 33 | 1 | 1 | 314 | 1 | 313 | 0.0 | 566 |
MS.gene33396.t1 | MTR_4g012960 | 86.943 | 314 | 37 | 2 | 1 | 314 | 1 | 310 | 0.0 | 553 |
MS.gene33396.t1 | MTR_4g013135 | 88.535 | 314 | 35 | 1 | 1 | 314 | 1 | 313 | 0.0 | 531 |
MS.gene33396.t1 | MTR_2g101840 | 62.857 | 315 | 115 | 2 | 1 | 314 | 1 | 314 | 9.88e-135 | 385 |
MS.gene33396.t1 | MTR_8g033390 | 45.390 | 282 | 149 | 2 | 38 | 314 | 42 | 323 | 1.45e-87 | 265 |
MS.gene33396.t1 | MTR_8g033410 | 40.065 | 307 | 173 | 3 | 16 | 314 | 23 | 326 | 2.32e-81 | 249 |
MS.gene33396.t1 | MTR_8g033400 | 39.672 | 305 | 174 | 3 | 17 | 314 | 32 | 333 | 2.66e-81 | 249 |
MS.gene33396.t1 | MTR_7g075830 | 42.105 | 266 | 139 | 4 | 62 | 313 | 50 | 314 | 4.42e-65 | 207 |
MS.gene33396.t1 | MTR_4g013040 | 77.215 | 79 | 18 | 0 | 66 | 144 | 4 | 82 | 6.87e-36 | 128 |
MS.gene33396.t1 | MTR_1g112510 | 32.990 | 291 | 169 | 6 | 44 | 309 | 60 | 349 | 2.89e-33 | 126 |
MS.gene33396.t1 | MTR_4g005880 | 29.412 | 255 | 171 | 4 | 68 | 314 | 151 | 404 | 2.21e-29 | 118 |
MS.gene33396.t1 | MTR_1g107480 | 28.627 | 255 | 173 | 4 | 68 | 314 | 118 | 371 | 2.45e-29 | 118 |
MS.gene33396.t1 | MTR_3g005970 | 28.295 | 258 | 162 | 6 | 59 | 296 | 108 | 362 | 2.54e-24 | 102 |
MS.gene33396.t1 | MTR_6g007170 | 25.632 | 277 | 197 | 4 | 40 | 307 | 91 | 367 | 8.86e-22 | 94.7 |
MS.gene33396.t1 | MTR_7g078990 | 23.932 | 234 | 167 | 3 | 82 | 305 | 88 | 320 | 2.51e-16 | 79.7 |
MS.gene33396.t1 | MTR_6g007175 | 23.529 | 272 | 190 | 4 | 40 | 307 | 60 | 317 | 4.00e-15 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33396.t1 | AT1G79870 | 75.478 | 314 | 76 | 1 | 1 | 314 | 1 | 313 | 5.19e-167 | 466 |
MS.gene33396.t1 | AT1G79870 | 70.701 | 314 | 72 | 2 | 1 | 314 | 1 | 294 | 5.30e-150 | 423 |
MS.gene33396.t1 | AT1G12550 | 53.069 | 277 | 129 | 1 | 38 | 313 | 44 | 320 | 3.27e-102 | 303 |
MS.gene33396.t1 | AT2G45630 | 42.230 | 296 | 168 | 3 | 22 | 314 | 43 | 338 | 2.50e-83 | 255 |
MS.gene33396.t1 | AT1G68010 | 32.069 | 290 | 173 | 4 | 44 | 309 | 60 | 349 | 3.27e-32 | 123 |
MS.gene33396.t1 | AT1G17745 | 30.888 | 259 | 166 | 5 | 68 | 314 | 145 | 402 | 1.28e-31 | 124 |
MS.gene33396.t1 | AT1G68010 | 32.384 | 281 | 166 | 4 | 44 | 300 | 60 | 340 | 1.48e-31 | 121 |
MS.gene33396.t1 | AT4G34200 | 30.196 | 255 | 169 | 4 | 68 | 314 | 124 | 377 | 1.66e-31 | 124 |
MS.gene33396.t1 | AT1G68010 | 31.959 | 291 | 173 | 5 | 44 | 309 | 60 | 350 | 1.47e-30 | 119 |
MS.gene33396.t1 | AT3G19480 | 30.078 | 256 | 168 | 6 | 68 | 314 | 109 | 362 | 3.86e-29 | 117 |
MS.gene33396.t1 | AT1G17745 | 28.322 | 286 | 165 | 7 | 68 | 314 | 145 | 429 | 1.18e-25 | 107 |
MS.gene33396.t1 | AT1G72190 | 30.435 | 253 | 156 | 5 | 59 | 296 | 106 | 353 | 2.26e-25 | 104 |
MS.gene33396.t1 | AT5G14780 | 27.686 | 242 | 168 | 3 | 77 | 311 | 114 | 355 | 4.73e-24 | 100 |
MS.gene33396.t1 | AT5G14780 | 27.686 | 242 | 168 | 3 | 77 | 311 | 102 | 343 | 5.18e-24 | 100 |
MS.gene33396.t1 | AT5G14780 | 27.686 | 242 | 168 | 3 | 77 | 311 | 128 | 369 | 6.25e-24 | 100 |
MS.gene33396.t1 | AT2G45630 | 33.333 | 135 | 88 | 2 | 22 | 154 | 43 | 177 | 4.25e-20 | 86.7 |
MS.gene33396.t1 | AT5G28310 | 33.333 | 180 | 68 | 5 | 136 | 314 | 105 | 233 | 1.17e-18 | 83.6 |
MS.gene33396.t1 | AT1G01510 | 22.807 | 228 | 163 | 3 | 91 | 305 | 105 | 332 | 9.70e-14 | 72.0 |
Find 97 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAAGTTCTTGTTCTAAGTA+TGG | 0.219870 | 4.2:-87728275 | None:intergenic |
CATGTTCCTGAGGAGCTATT+TGG | 0.223949 | 4.2:+87730913 | MS.gene33396:CDS |
GCTACAACCTCTTCCGCTTA+TGG | 0.260804 | 4.2:+87728303 | MS.gene33396:CDS |
GACTGATGAAGTTGCTGATT+TGG | 0.274964 | 4.2:+87728535 | MS.gene33396:CDS |
TACCACGGCCGATGTTAATT+AGG | 0.282501 | 4.2:-87730804 | None:intergenic |
GCCATGGCTGACCTTGTTCT+TGG | 0.291981 | 4.2:+87730994 | MS.gene33396:CDS |
TGCACTCGTTGAAGGTCGTT+TGG | 0.294166 | 4.2:+87730855 | MS.gene33396:CDS |
GAAGTTGCTGATTTGGCTAT+TGG | 0.325922 | 4.2:+87728542 | MS.gene33396:CDS |
GTTCTGGAATAGTAGGATAT+TGG | 0.331013 | 4.2:-87730631 | None:intergenic |
CTACAACCTCTTCCGCTTAT+GGG | 0.337685 | 4.2:+87728304 | MS.gene33396:CDS |
ATGTTCCTGAGGAGCTATTT+GGG | 0.342324 | 4.2:+87730914 | MS.gene33396:CDS |
TTGACGCGCCGTGTTGAGTT+AGG | 0.386120 | 4.2:-87728349 | None:intergenic |
AACCTAGAGGCTCATTTCCT+TGG | 0.387843 | 4.2:+87731018 | MS.gene33396:CDS |
TGATGCTTACGCTTCTTAGA+AGG | 0.390098 | 4.2:+87728567 | MS.gene33396:CDS |
ATTAAAACCTTCGGCTCTCT+TGG | 0.419458 | 4.2:-87730605 | None:intergenic |
GCACTCGTTGAAGGTCGTTT+GGG | 0.421415 | 4.2:+87730856 | MS.gene33396:CDS |
CTGGTCTCTGCACTCGTTGA+AGG | 0.431513 | 4.2:+87730847 | MS.gene33396:CDS |
GATATGTTAGAGGTGGGAAT+TGG | 0.431710 | 4.2:+87728606 | MS.gene33396:CDS |
ACCGTCGGCATTATTGGGTT+GGG | 0.433408 | 4.2:+87730562 | MS.gene33396:CDS |
CGCCGTGTTGAGTTAGGAGT+TGG | 0.435225 | 4.2:-87728343 | None:intergenic |
GGTGTTGATAAGATTGATCT+TGG | 0.438180 | 4.2:+87728464 | MS.gene33396:CDS |
ATTATTGGGTTGGGAAGGAT+TGG | 0.445098 | 4.2:+87730571 | MS.gene33396:CDS |
AAACCCATCACATCATCAAC+CGG | 0.447905 | 4.2:+87730749 | MS.gene33396:CDS |
GAAGGTCGTTTGGGTGGAGC+TGG | 0.449114 | 4.2:+87730865 | MS.gene33396:CDS |
TCTAGCCCAAATAGCTCCTC+AGG | 0.450904 | 4.2:-87730919 | None:intergenic |
ATGTTAATTAGGAAACCCTT+TGG | 0.451535 | 4.2:-87730793 | None:intergenic |
AACCGTCGGCATTATTGGGT+TGG | 0.454362 | 4.2:+87730561 | MS.gene33396:CDS |
TAAGTTCTTGTTCTAAGTAT+GGG | 0.462386 | 4.2:-87728274 | None:intergenic |
TATTGGACAATTAAAACCTT+CGG | 0.464821 | 4.2:-87730614 | None:intergenic |
CTCGAAACGATTTCAAGCTT+CGG | 0.469789 | 4.2:-87728431 | None:intergenic |
TGATGGGTTTCCTCTGTAAG+AGG | 0.471334 | 4.2:-87730736 | None:intergenic |
AAAGCCACTGTTAACTCCCC+TGG | 0.471371 | 4.2:+87731041 | MS.gene33396:CDS |
TGCTTCAATGAGGTCAGAAT+CGG | 0.492845 | 4.2:-87728405 | None:intergenic |
CTTGGCAAGTGTAAGGAGAA+AGG | 0.493276 | 4.2:+87728482 | MS.gene33396:CDS |
GATTGATCTTGGCAAGTGTA+AGG | 0.493761 | 4.2:+87728475 | MS.gene33396:CDS |
CTCGTTGAAGGTCGTTTGGG+TGG | 0.518253 | 4.2:+87730859 | MS.gene33396:CDS |
ACCCTAATTATGGGATCCAT+TGG | 0.520511 | 4.2:+87728224 | None:intergenic |
ACTTCATCAGTCAAAACATC+AGG | 0.522096 | 4.2:-87728524 | None:intergenic |
GCGTCAATCCGTGCGGTGGT+CGG | 0.522401 | 4.2:+87728365 | MS.gene33396:CDS |
ACGAGTGCAGAGACCAGCTC+TGG | 0.523782 | 4.2:-87730841 | None:intergenic |
GGAAATCCCATAAGCGGAAG+AGG | 0.528335 | 4.2:-87728310 | None:intergenic |
GAATGTGATCGATATGTTAG+AGG | 0.530505 | 4.2:+87728596 | MS.gene33396:CDS |
GCCGTGTTGAGTTAGGAGTT+GGG | 0.534313 | 4.2:-87728342 | None:intergenic |
TTCCTAATTAACATCGGCCG+TGG | 0.535538 | 4.2:+87730802 | MS.gene33396:CDS |
TTGGCAAGTGTAAGGAGAAA+GGG | 0.537192 | 4.2:+87728483 | MS.gene33396:CDS |
CATTAACGCACTCGGTCCAA+AGG | 0.544536 | 4.2:+87730777 | MS.gene33396:CDS |
CCTCCCGGTTGATGATGTGA+TGG | 0.545747 | 4.2:-87730753 | None:intergenic |
AACAACTAGTATATCACAGT+TGG | 0.560464 | 4.2:-87730707 | None:intergenic |
ATCGTTTCGAGCTTCAGTGT+TGG | 0.560718 | 4.2:+87728443 | MS.gene33396:CDS |
ATTAACGCACTCGGTCCAAA+GGG | 0.561964 | 4.2:+87730778 | MS.gene33396:CDS |
GCATGTTGATGAGCCAGAGC+TGG | 0.562230 | 4.2:+87730828 | MS.gene33396:CDS |
GAGTTAACAGTGGCTTTCCA+AGG | 0.564143 | 4.2:-87731035 | None:intergenic |
GGTTTCCTCTGTAAGAGGGC+AGG | 0.567739 | 4.2:-87730731 | None:intergenic |
AGATACAAGGAGGACGCCAA+TGG | 0.569927 | 4.2:-87728240 | None:intergenic |
TCGGCATTATTGGGTTGGGA+AGG | 0.570005 | 4.2:+87730566 | MS.gene33396:CDS |
GTGATCGATATGTTAGAGGT+GGG | 0.572738 | 4.2:+87728600 | MS.gene33396:CDS |
TTCCAAGGAAATGAGCCTCT+AGG | 0.572892 | 4.2:-87731020 | None:intergenic |
TGTTGCCTGCCCTCTTACAG+AGG | 0.573697 | 4.2:+87730726 | MS.gene33396:CDS |
GGTTGAAACTCGAACTGCCA+TGG | 0.576061 | 4.2:+87730978 | MS.gene33396:CDS |
CTATTCCAGAACTCAAAAGC+AGG | 0.576607 | 4.2:+87730642 | MS.gene33396:CDS |
TCCAAGAACAAGGTCAGCCA+TGG | 0.581407 | 4.2:-87730995 | None:intergenic |
GATGCAAGCTCAACAACACT+TGG | 0.581576 | 4.2:-87730685 | None:intergenic |
CCTCTAGGTTTCCAAGAACA+AGG | 0.585248 | 4.2:-87731005 | None:intergenic |
CTCCCGGTTGATGATGTGAT+GGG | 0.589362 | 4.2:-87730752 | None:intergenic |
GCAATTGCCAAGAGAGCCGA+AGG | 0.593845 | 4.2:+87730598 | MS.gene33396:CDS |
TCCCAACCCAATAATGCCGA+CGG | 0.594240 | 4.2:-87730563 | None:intergenic |
GCCTCATGTTGGAAGCGCCA+CGG | 0.595237 | 4.2:+87730957 | MS.gene33396:CDS |
GTTGTATTGCTGCCTCATGT+TGG | 0.596611 | 4.2:+87730946 | MS.gene33396:CDS |
TGATTATAAGTTGACCACTA+AGG | 0.596925 | 4.2:+87728637 | MS.gene33396:CDS |
AGAGTCATCTAGCTTAAACC+AGG | 0.597644 | 4.2:-87731059 | None:intergenic |
CGAGTGCGTTAATGACCTCC+CGG | 0.598154 | 4.2:-87730768 | None:intergenic |
GAGTCATCTAGCTTAAACCA+GGG | 0.602403 | 4.2:-87731058 | None:intergenic |
GTGGTCGGAGATGCATTCGC+CGG | 0.604792 | 4.2:+87728380 | MS.gene33396:CDS |
GGATTACTTGATGAGATACA+AGG | 0.605192 | 4.2:-87728253 | None:intergenic |
CGGGAGGTCATTAACGCACT+CGG | 0.607092 | 4.2:+87730769 | MS.gene33396:CDS |
AATGAGGTCAGAATCGGCAC+CGG | 0.609039 | 4.2:-87728399 | None:intergenic |
ATGCATCTCCGACCACCGCA+CGG | 0.620236 | 4.2:-87728373 | None:intergenic |
ACCGTGGCGCTTCCAACATG+AGG | 0.621456 | 4.2:-87730958 | None:intergenic |
TTTGAGGGAAATCCCATAAG+CGG | 0.621788 | 4.2:-87728316 | None:intergenic |
CGGCGCGTCAATCCGTGCGG+TGG | 0.622908 | 4.2:+87728361 | MS.gene33396:CDS |
AATAGCTCCTCAGGAACATG+AGG | 0.635446 | 4.2:-87730910 | None:intergenic |
GATGGGTTTCCTCTGTAAGA+GGG | 0.637287 | 4.2:-87730735 | None:intergenic |
TGTGATCGATATGTTAGAGG+TGG | 0.638881 | 4.2:+87728599 | MS.gene33396:CDS |
AAGGGTTTCCTAATTAACAT+CGG | 0.642821 | 4.2:+87730796 | MS.gene33396:CDS |
TCCCAACTCCTAACTCAACA+CGG | 0.649294 | 4.2:+87728341 | MS.gene33396:CDS |
CCTTGTTCTTGGAAACCTAG+AGG | 0.654183 | 4.2:+87731005 | MS.gene33396:CDS |
AACCCATCACATCATCAACC+GGG | 0.665510 | 4.2:+87730750 | MS.gene33396:CDS |
AAACGAGCCTCATGTTCCTG+AGG | 0.675619 | 4.2:+87730903 | MS.gene33396:CDS |
GCTTCGGCAGTGCTTCAATG+AGG | 0.679340 | 4.2:-87728415 | None:intergenic |
GGCAGTTCGAGTTTCAACCG+TGG | 0.681063 | 4.2:-87730974 | None:intergenic |
TAAACCAGGGGAGTTAACAG+TGG | 0.689434 | 4.2:-87731045 | None:intergenic |
AGTCATCTAGCTTAAACCAG+GGG | 0.699457 | 4.2:-87731057 | None:intergenic |
AGAGGTGGGAATTGGAAACG+TGG | 0.731684 | 4.2:+87728614 | MS.gene33396:CDS |
ACACGGCGCGTCAATCCGTG+CGG | 0.731922 | 4.2:+87728358 | MS.gene33396:CDS |
GCTCATCAACATGCTTACCA+CGG | 0.732970 | 4.2:-87730819 | None:intergenic |
CCATCACATCATCAACCGGG+AGG | 0.750270 | 4.2:+87730753 | MS.gene33396:CDS |
TTACTTGATGAGATACAAGG+AGG | 0.773364 | 4.2:-87728250 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATTCTTTTCTTATATTT+AGG | + | chr4.2:87728808-87728827 | MS.gene33396:intron | 10.0% |
!! | ATATAGTTTGATTGAAATTA+CGG | + | chr4.2:87729111-87729130 | MS.gene33396:intron | 15.0% |
!! | CAAAAAGAAAATTAATTTCT+TGG | - | chr4.2:87730511-87730530 | None:intergenic | 15.0% |
!!! | AAATTAATTTTCTTTTTGTC+TGG | + | chr4.2:87730513-87730532 | MS.gene33396:intron | 15.0% |
!! | AAATATTTATAGTGCATGTT+TGG | - | chr4.2:87729077-87729096 | None:intergenic | 20.0% |
!! | AAGCTTACAAATTGTAAATA+TGG | - | chr4.2:87730304-87730323 | None:intergenic | 20.0% |
!! | TGATATTGTGAAAAAATTAG+CGG | + | chr4.2:87728842-87728861 | MS.gene33396:intron | 20.0% |
!! | TGTAAATATGGAAAAATAAG+TGG | - | chr4.2:87730292-87730311 | None:intergenic | 20.0% |
!! | TTTGTCATACTCATTAAAAT+TGG | + | chr4.2:87730408-87730427 | MS.gene33396:intron | 20.0% |
!!! | AAATCAATTGAGAAATTTTG+CGG | - | chr4.2:87728677-87728696 | None:intergenic | 20.0% |
!!! | ACATGCACTATAAATATTTT+AGG | + | chr4.2:87729078-87729097 | MS.gene33396:intron | 20.0% |
!!! | ATAAATATTTTAGGTAGGAA+AGG | + | chr4.2:87729087-87729106 | MS.gene33396:intron | 20.0% |
!!! | ATAAATATTTTAGGTTGGAA+AGG | + | chr4.2:87729544-87729563 | MS.gene33396:intron | 20.0% |
!!! | TCTTTTCTTATATTTAGGAT+CGG | + | chr4.2:87728813-87728832 | MS.gene33396:intron | 20.0% |
! | AACTAACACAATTGTATGTT+TGG | + | chr4.2:87729390-87729409 | MS.gene33396:intron | 25.0% |
! | AAGTGAAAACAAATGTCATA+AGG | - | chr4.2:87730134-87730153 | None:intergenic | 25.0% |
! | AGTTTACAAGTATGAGTTAA+CGG | + | chr4.2:87729296-87729315 | MS.gene33396:intron | 25.0% |
! | ATACAATTGTGTTAGTTGAT+TGG | - | chr4.2:87729387-87729406 | None:intergenic | 25.0% |
! | ATGATGAACAGTAAAGATAA+AGG | - | chr4.2:87729730-87729749 | None:intergenic | 25.0% |
! | TATTGGACAATTAAAACCTT+CGG | - | chr4.2:87730617-87730636 | None:intergenic | 25.0% |
!! | TAAGTTCTTGTTCTAAGTAT+GGG | - | chr4.2:87728277-87728296 | None:intergenic | 25.0% |
!! | TGATCTATCATCATGTTTTA+AGG | + | chr4.2:87730361-87730380 | MS.gene33396:intron | 25.0% |
!! | TTAAGTTCTTGTTCTAAGTA+TGG | - | chr4.2:87728278-87728297 | None:intergenic | 25.0% |
!!! | ACATGTTTTTATTGAGTCTT+CGG | + | chr4.2:87730227-87730246 | MS.gene33396:intron | 25.0% |
!!! | CATATATCCGATTTTTTTTG+TGG | - | chr4.2:87730453-87730472 | None:intergenic | 25.0% |
!!! | GATCTATCATCATGTTTTAA+GGG | + | chr4.2:87730362-87730381 | MS.gene33396:intron | 25.0% |
!!! | GCACTATAAATATTTTAGGT+AGG | + | chr4.2:87729082-87729101 | MS.gene33396:intron | 25.0% |
!!! | GCACTATAAATATTTTAGGT+TGG | + | chr4.2:87729082-87729101 | MS.gene33396:intron | 25.0% |
!!! | TTGTAGTGTATAAGTTTTAG+AGG | + | chr4.2:87729600-87729619 | MS.gene33396:intron | 25.0% |
AACAACTAGTATATCACAGT+TGG | - | chr4.2:87730710-87730729 | None:intergenic | 30.0% | |
AAGGGTTTCCTAATTAACAT+CGG | + | chr4.2:87730796-87730815 | MS.gene33396:CDS | 30.0% | |
ACACAATTGTATGTTTGGAT+TGG | + | chr4.2:87729395-87729414 | MS.gene33396:intron | 30.0% | |
AGCTGTACCACAAAAAAAAT+CGG | + | chr4.2:87730443-87730462 | MS.gene33396:intron | 30.0% | |
ATGTTAATTAGGAAACCCTT+TGG | - | chr4.2:87730796-87730815 | None:intergenic | 30.0% | |
ATTTCTTGGTTGAAAATGCA+TGG | - | chr4.2:87730497-87730516 | None:intergenic | 30.0% | |
ATTTGTAAGCTTGCAGAAAA+CGG | + | chr4.2:87730312-87730331 | MS.gene33396:intron | 30.0% | |
CTAACTCAATTGAAGTTGTA+TGG | + | chr4.2:87729837-87729856 | MS.gene33396:intron | 30.0% | |
GAGATTCAGCAAATTGAATT+GGG | - | chr4.2:87730020-87730039 | None:intergenic | 30.0% | |
GAGCATAGTATTACTCTATT+AGG | + | chr4.2:87729702-87729721 | MS.gene33396:intron | 30.0% | |
TATTGTGAAAAAATTAGCGG+TGG | + | chr4.2:87728845-87728864 | MS.gene33396:intron | 30.0% | |
TGAGATTCAGCAAATTGAAT+TGG | - | chr4.2:87730021-87730040 | None:intergenic | 30.0% | |
TTTATAGTGCATGTTTGGAT+TGG | - | chr4.2:87729072-87729091 | None:intergenic | 30.0% | |
TTTCTTGGTTGAAAATGCAT+GGG | - | chr4.2:87730496-87730515 | None:intergenic | 30.0% | |
! | AGGAACATAGTTTGAAATTG+TGG | + | chr4.2:87729564-87729583 | MS.gene33396:intron | 30.0% |
! | CTTTTTCCAGATTGATACAT+CGG | - | chr4.2:87728781-87728800 | None:intergenic | 30.0% |
! | GAGAAATTTTGCGGTTATTA+GGG | - | chr4.2:87728668-87728687 | None:intergenic | 30.0% |
! | TATAGCTTTTGTCAAAATCG+TGG | + | chr4.2:87729016-87729035 | MS.gene33396:intron | 30.0% |
! | TGAGAAATTTTGCGGTTATT+AGG | - | chr4.2:87728669-87728688 | None:intergenic | 30.0% |
! | TGATTATAAGTTGACCACTA+AGG | + | chr4.2:87728637-87728656 | MS.gene33396:CDS | 30.0% |
! | TTATTAGGGTTTTACCTTAG+TGG | - | chr4.2:87728654-87728673 | None:intergenic | 30.0% |
! | TTCTTATATTTAGGATCGGA+GGG | + | chr4.2:87728817-87728836 | MS.gene33396:intron | 30.0% |
! | TTTCTTATATTTAGGATCGG+AGG | + | chr4.2:87728816-87728835 | MS.gene33396:intron | 30.0% |
!! | ATTCAATTTGCTGAATCTCA+TGG | + | chr4.2:87730021-87730040 | MS.gene33396:intron | 30.0% |
!!! | GATTTGCATTTTTAGTCTTG+TGG | + | chr4.2:87728692-87728711 | MS.gene33396:intron | 30.0% |
AACCAATGTAGAAACACACT+TGG | + | chr4.2:87728871-87728890 | MS.gene33396:intron | 35.0% | |
AATCACAATTGTGGCTACAT+CGG | + | chr4.2:87729188-87729207 | MS.gene33396:intron | 35.0% | |
AATCACAATTGTGGCTACAT+TGG | + | chr4.2:87729188-87729207 | MS.gene33396:intron | 35.0% | |
AATCTCAGTTGAATCATGGT+GGG | + | chr4.2:87730058-87730077 | MS.gene33396:intron | 35.0% | |
ACTTCATCAGTCAAAACATC+AGG | - | chr4.2:87728527-87728546 | None:intergenic | 35.0% | |
CTTGATATTGCAGCAAAATG+AGG | - | chr4.2:87729224-87729243 | None:intergenic | 35.0% | |
CTTGTAAACTTGTGAGTTAG+TGG | - | chr4.2:87729286-87729305 | None:intergenic | 35.0% | |
GAAAAACCGATGTATCAATC+TGG | + | chr4.2:87728772-87728791 | MS.gene33396:intron | 35.0% | |
GAATGTGATCGATATGTTAG+AGG | + | chr4.2:87728596-87728615 | MS.gene33396:CDS | 35.0% | |
GGATTACTTGATGAGATACA+AGG | - | chr4.2:87728256-87728275 | None:intergenic | 35.0% | |
TGGTGATTGTATGTTTGGAT+TGG | + | chr4.2:87728891-87728910 | MS.gene33396:intron | 35.0% | |
TGTGAATCTCAGTTGAATCA+TGG | + | chr4.2:87730054-87730073 | MS.gene33396:intron | 35.0% | |
TTACAAGTATGAGTTAACGG+TGG | + | chr4.2:87729299-87729318 | MS.gene33396:intron | 35.0% | |
TTACTTGATGAGATACAAGG+AGG | - | chr4.2:87728253-87728272 | None:intergenic | 35.0% | |
! | ACACTTGGTGATTGTATGTT+TGG | + | chr4.2:87728886-87728905 | MS.gene33396:intron | 35.0% |
! | AGCTTTTGTCAAAATCGTAG+TGG | + | chr4.2:87729356-87729375 | MS.gene33396:intron | 35.0% |
! | CAATTGTATGTTTGGATTGG+TGG | + | chr4.2:87729398-87729417 | MS.gene33396:intron | 35.0% |
! | CTCATTTTGCTGCAATATCA+AGG | + | chr4.2:87729222-87729241 | MS.gene33396:intron | 35.0% |
! | TTAGGAGTTGGGATTTTTGA+GGG | - | chr4.2:87728334-87728353 | None:intergenic | 35.0% |
!! | GGTGTTGATAAGATTGATCT+TGG | + | chr4.2:87728464-87728483 | MS.gene33396:CDS | 35.0% |
!! | GTTCTGGAATAGTAGGATAT+TGG | - | chr4.2:87730634-87730653 | None:intergenic | 35.0% |
!! | TCGCAGTGTATAAGTTTTAG+AGG | + | chr4.2:87729147-87729166 | MS.gene33396:intron | 35.0% |
!!! | AGTTTTAGAGGTCTCTACAA+CGG | + | chr4.2:87729159-87729178 | MS.gene33396:intron | 35.0% |
!!! | CTTTTGAGTTCTGGAATAGT+AGG | - | chr4.2:87730641-87730660 | None:intergenic | 35.0% |
AAACCCATCACATCATCAAC+CGG | + | chr4.2:87730749-87730768 | MS.gene33396:CDS | 40.0% | |
AGAAACCAAGTCGTTCAACT+CGG | - | chr4.2:87730101-87730120 | None:intergenic | 40.0% | |
ATGTTCCTGAGGAGCTATTT+GGG | + | chr4.2:87730914-87730933 | MS.gene33396:CDS | 40.0% | |
ATTAAAACCTTCGGCTCTCT+TGG | - | chr4.2:87730608-87730627 | None:intergenic | 40.0% | |
CGGCAATACAATCACAATTG+TGG | + | chr4.2:87729179-87729198 | MS.gene33396:intron | 40.0% | |
CTATTCCAGAACTCAAAAGC+AGG | + | chr4.2:87730642-87730661 | MS.gene33396:CDS | 40.0% | |
CTCGAAACGATTTCAAGCTT+CGG | - | chr4.2:87728434-87728453 | None:intergenic | 40.0% | |
CTTGACATTGCAGCAAAATG+AGG | - | chr4.2:87729677-87729696 | None:intergenic | 40.0% | |
GAAAAACCGTCGGCATTATT+GGG | + | chr4.2:87730557-87730576 | MS.gene33396:CDS | 40.0% | |
GAATCTCAGTTGAATCATGG+TGG | + | chr4.2:87730057-87730076 | MS.gene33396:intron | 40.0% | |
GATATGTTAGAGGTGGGAAT+TGG | + | chr4.2:87728606-87728625 | MS.gene33396:CDS | 40.0% | |
GATTGATCTTGGCAAGTGTA+AGG | + | chr4.2:87728475-87728494 | MS.gene33396:CDS | 40.0% | |
GCATGAATCGTAAGATAGTG+AGG | - | chr4.2:87729913-87729932 | None:intergenic | 40.0% | |
GGAAGTTCTACTTGTTTGCA+TGG | + | chr4.2:87730248-87730267 | MS.gene33396:intron | 40.0% | |
GTGATCGATATGTTAGAGGT+GGG | + | chr4.2:87728600-87728619 | MS.gene33396:CDS | 40.0% | |
GTGGTAAGATTGATGGAATC+AGG | - | chr4.2:87729050-87729069 | None:intergenic | 40.0% | |
TGAGTTTGGAAAAGTCTGAG+TGG | + | chr4.2:87729421-87729440 | MS.gene33396:intron | 40.0% | |
TGATGCTTACGCTTCTTAGA+AGG | + | chr4.2:87728567-87728586 | MS.gene33396:CDS | 40.0% | |
TGCTTCAATGAGGTCAGAAT+CGG | - | chr4.2:87728408-87728427 | None:intergenic | 40.0% | |
TGTGATCGATATGTTAGAGG+TGG | + | chr4.2:87728599-87728618 | MS.gene33396:CDS | 40.0% | |
TTGCTGAATCTCATGGAGTT+GGG | + | chr4.2:87730028-87730047 | MS.gene33396:intron | 40.0% | |
TTGGCAAGTGTAAGGAGAAA+GGG | + | chr4.2:87728483-87728502 | MS.gene33396:CDS | 40.0% | |
TTTGAGGGAAATCCCATAAG+CGG | - | chr4.2:87728319-87728338 | None:intergenic | 40.0% | |
TTTGCTGAATCTCATGGAGT+TGG | + | chr4.2:87730027-87730046 | MS.gene33396:intron | 40.0% | |
! | ATAGTGCATGTTTGGATTGG+TGG | - | chr4.2:87729069-87729088 | None:intergenic | 40.0% |
! | CACCAAGTGTGTTTCTACAT+TGG | - | chr4.2:87728876-87728895 | None:intergenic | 40.0% |
! | CTCATTTTGCTGCAATGTCA+AGG | + | chr4.2:87729675-87729694 | MS.gene33396:intron | 40.0% |
! | GACTGATGAAGTTGCTGATT+TGG | + | chr4.2:87728535-87728554 | MS.gene33396:CDS | 40.0% |
! | GTATTTTCCTTGCAGTTCTC+TGG | + | chr4.2:87730535-87730554 | MS.gene33396:intron | 40.0% |
! | GTTAGGAGTTGGGATTTTTG+AGG | - | chr4.2:87728335-87728354 | None:intergenic | 40.0% |
!! | ATTATTGGGTTGGGAAGGAT+TGG | + | chr4.2:87730571-87730590 | MS.gene33396:CDS | 40.0% |
!! | GAAGTTGCTGATTTGGCTAT+TGG | + | chr4.2:87728542-87728561 | MS.gene33396:CDS | 40.0% |
!! | TGGATTGGTGGTAAGATTGA+TGG | - | chr4.2:87729057-87729076 | None:intergenic | 40.0% |
!!! | AGTTTTAGAGGTCTCTGCAA+CGG | + | chr4.2:87729612-87729631 | MS.gene33396:intron | 40.0% |
AACCCATCACATCATCAACC+GGG | + | chr4.2:87730750-87730769 | MS.gene33396:CDS | 45.0% | |
AACCTAGAGGCTCATTTCCT+TGG | + | chr4.2:87731018-87731037 | MS.gene33396:CDS | 45.0% | |
AATAGCTCCTCAGGAACATG+AGG | - | chr4.2:87730913-87730932 | None:intergenic | 45.0% | |
ATCGTTTCGAGCTTCAGTGT+TGG | + | chr4.2:87728443-87728462 | MS.gene33396:CDS | 45.0% | |
ATTAACGCACTCGGTCCAAA+GGG | + | chr4.2:87730778-87730797 | MS.gene33396:CDS | 45.0% | |
CATGTTCCTGAGGAGCTATT+TGG | + | chr4.2:87730913-87730932 | MS.gene33396:CDS | 45.0% | |
CCTCTAGGTTTCCAAGAACA+AGG | - | chr4.2:87731008-87731027 | None:intergenic | 45.0% | |
CCTTGTTCTTGGAAACCTAG+AGG | + | chr4.2:87731005-87731024 | MS.gene33396:CDS | 45.0% | |
CTACAACCTCTTCCGCTTAT+GGG | + | chr4.2:87728304-87728323 | MS.gene33396:CDS | 45.0% | |
CTTGGCAAGTGTAAGGAGAA+AGG | + | chr4.2:87728482-87728501 | MS.gene33396:CDS | 45.0% | |
CTTGGTTGAAAATGCATGGG+TGG | - | chr4.2:87730493-87730512 | None:intergenic | 45.0% | |
GAGCATAGTAGTGCTCTGTT+AGG | + | chr4.2:87729249-87729268 | MS.gene33396:intron | 45.0% | |
GAGTTAACAGTGGCTTTCCA+AGG | - | chr4.2:87731038-87731057 | None:intergenic | 45.0% | |
GATGCAAGCTCAACAACACT+TGG | - | chr4.2:87730688-87730707 | None:intergenic | 45.0% | |
GCTCATCAACATGCTTACCA+CGG | - | chr4.2:87730822-87730841 | None:intergenic | 45.0% | |
GGAAAAACCGTCGGCATTAT+TGG | + | chr4.2:87730556-87730575 | MS.gene33396:CDS | 45.0% | |
GTTGTATTGCTGCCTCATGT+TGG | + | chr4.2:87730946-87730965 | MS.gene33396:CDS | 45.0% | |
TAAACCAGGGGAGTTAACAG+TGG | - | chr4.2:87731048-87731067 | None:intergenic | 45.0% | |
TACCACGGCCGATGTTAATT+AGG | - | chr4.2:87730807-87730826 | None:intergenic | 45.0% | |
TCCCAACTCCTAACTCAACA+CGG | + | chr4.2:87728341-87728360 | MS.gene33396:CDS | 45.0% | |
TTCCAAGGAAATGAGCCTCT+AGG | - | chr4.2:87731023-87731042 | None:intergenic | 45.0% | |
TTCCTAATTAACATCGGCCG+TGG | + | chr4.2:87730802-87730821 | MS.gene33396:CDS | 45.0% | |
! | AGTGGTTTGTCAAACTCGAG+AGG | - | chr4.2:87730274-87730293 | None:intergenic | 45.0% |
! | CAGTTCTCTGGAAAAACCGT+CGG | + | chr4.2:87730547-87730566 | MS.gene33396:intron | 45.0% |
! | GATGGGTTTCCTCTGTAAGA+GGG | - | chr4.2:87730738-87730757 | None:intergenic | 45.0% |
! | GGTTTTTCCAGAGAACTGCA+AGG | - | chr4.2:87730545-87730564 | None:intergenic | 45.0% |
!! | GTTTGGATTGGTGGTGAGTT+TGG | + | chr4.2:87729407-87729426 | MS.gene33396:intron | 45.0% |
!! | TGATGGGTTTCCTCTGTAAG+AGG | - | chr4.2:87730739-87730758 | None:intergenic | 45.0% |
!!! | TGACTCCTGCTTTTGAGTTC+TGG | - | chr4.2:87730650-87730669 | None:intergenic | 45.0% |
!!! | AATAATTTTTACTTATATTT+AGG | - | chr4.2:87728739-87728758 | None:intergenic | 5.0% |
AAACGAGCCTCATGTTCCTG+AGG | + | chr4.2:87730903-87730922 | MS.gene33396:CDS | 50.0% | |
AAAGCCACTGTTAACTCCCC+TGG | + | chr4.2:87731041-87731060 | MS.gene33396:CDS | 50.0% | |
AACCGTCGGCATTATTGGGT+TGG | + | chr4.2:87730561-87730580 | MS.gene33396:CDS | 50.0% | |
AATGAGGTCAGAATCGGCAC+CGG | - | chr4.2:87728402-87728421 | None:intergenic | 50.0% | |
ACCGTCGGCATTATTGGGTT+GGG | + | chr4.2:87730562-87730581 | MS.gene33396:CDS | 50.0% | |
AGAGGTGGGAATTGGAAACG+TGG | + | chr4.2:87728614-87728633 | MS.gene33396:CDS | 50.0% | |
AGATACAAGGAGGACGCCAA+TGG | - | chr4.2:87728243-87728262 | None:intergenic | 50.0% | |
CATTAACGCACTCGGTCCAA+AGG | + | chr4.2:87730777-87730796 | MS.gene33396:CDS | 50.0% | |
CGAGTTTGGCAAAGTCACAG+TGG | + | chr4.2:87728917-87728936 | MS.gene33396:intron | 50.0% | |
GCACTCGTTGAAGGTCGTTT+GGG | + | chr4.2:87730856-87730875 | MS.gene33396:CDS | 50.0% | |
GCCGTGTTGAGTTAGGAGTT+GGG | - | chr4.2:87728345-87728364 | None:intergenic | 50.0% | |
GCTACAACCTCTTCCGCTTA+TGG | + | chr4.2:87728303-87728322 | MS.gene33396:CDS | 50.0% | |
GGAAATCCCATAAGCGGAAG+AGG | - | chr4.2:87728313-87728332 | None:intergenic | 50.0% | |
GGTTGAAACTCGAACTGCCA+TGG | + | chr4.2:87730978-87730997 | MS.gene33396:CDS | 50.0% | |
TCCAAGAACAAGGTCAGCCA+TGG | - | chr4.2:87730998-87731017 | None:intergenic | 50.0% | |
TCCCAACCCAATAATGCCGA+CGG | - | chr4.2:87730566-87730585 | None:intergenic | 50.0% | |
TCTAGCCCAAATAGCTCCTC+AGG | - | chr4.2:87730922-87730941 | None:intergenic | 50.0% | |
TGCACTCGTTGAAGGTCGTT+TGG | + | chr4.2:87730855-87730874 | MS.gene33396:CDS | 50.0% | |
! | GTTCAACTCGGCCTGTTTCT+GGG | - | chr4.2:87730089-87730108 | None:intergenic | 50.0% |
!! | CTCCCGGTTGATGATGTGAT+GGG | - | chr4.2:87730755-87730774 | None:intergenic | 50.0% |
!! | GTTTGGATTGGCAGCGAGTT+TGG | + | chr4.2:87728903-87728922 | MS.gene33396:intron | 50.0% |
!! | TCGGCATTATTGGGTTGGGA+AGG | + | chr4.2:87730566-87730585 | MS.gene33396:CDS | 50.0% |
CCATCACATCATCAACCGGG+AGG | + | chr4.2:87730753-87730772 | MS.gene33396:CDS | 55.0% | |
CGAGTGCGTTAATGACCTCC+CGG | - | chr4.2:87730771-87730790 | None:intergenic | 55.0% | |
CGCCGTGTTGAGTTAGGAGT+TGG | - | chr4.2:87728346-87728365 | None:intergenic | 55.0% | |
CGGGAGGTCATTAACGCACT+CGG | + | chr4.2:87730769-87730788 | MS.gene33396:CDS | 55.0% | |
CGTTCAACTCGGCCTGTTTC+TGG | - | chr4.2:87730090-87730109 | None:intergenic | 55.0% | |
CTCGTTGAAGGTCGTTTGGG+TGG | + | chr4.2:87730859-87730878 | MS.gene33396:CDS | 55.0% | |
CTGGTCTCTGCACTCGTTGA+AGG | + | chr4.2:87730847-87730866 | MS.gene33396:CDS | 55.0% | |
GCAATTGCCAAGAGAGCCGA+AGG | + | chr4.2:87730598-87730617 | MS.gene33396:CDS | 55.0% | |
GCCATGGCTGACCTTGTTCT+TGG | + | chr4.2:87730994-87731013 | MS.gene33396:CDS | 55.0% | |
GCTTCGGCAGTGCTTCAATG+AGG | - | chr4.2:87728418-87728437 | None:intergenic | 55.0% | |
GGTGGGTACATCCCAGAAAC+AGG | + | chr4.2:87730075-87730094 | MS.gene33396:intron | 55.0% | |
GGTTTCCTCTGTAAGAGGGC+AGG | - | chr4.2:87730734-87730753 | None:intergenic | 55.0% | |
TGTTGCCTGCCCTCTTACAG+AGG | + | chr4.2:87730726-87730745 | MS.gene33396:CDS | 55.0% | |
TTGACGCGCCGTGTTGAGTT+AGG | - | chr4.2:87728352-87728371 | None:intergenic | 55.0% | |
! | ACAGGCCGAGTTGAACGACT+TGG | + | chr4.2:87730093-87730112 | MS.gene33396:intron | 55.0% |
! | GCATGTTGATGAGCCAGAGC+TGG | + | chr4.2:87730828-87730847 | MS.gene33396:CDS | 55.0% |
! | GGCAGTTCGAGTTTCAACCG+TGG | - | chr4.2:87730977-87730996 | None:intergenic | 55.0% |
!! | CCTCCCGGTTGATGATGTGA+TGG | - | chr4.2:87730756-87730775 | None:intergenic | 55.0% |
ACCGTGGCGCTTCCAACATG+AGG | - | chr4.2:87730961-87730980 | None:intergenic | 60.0% | |
ACGAGTGCAGAGACCAGCTC+TGG | - | chr4.2:87730844-87730863 | None:intergenic | 60.0% | |
ATGCATCTCCGACCACCGCA+CGG | - | chr4.2:87728376-87728395 | None:intergenic | 60.0% | |
GAAGGTCGTTTGGGTGGAGC+TGG | + | chr4.2:87730865-87730884 | MS.gene33396:CDS | 60.0% | |
GTGGTCGGAGATGCATTCGC+CGG | + | chr4.2:87728380-87728399 | MS.gene33396:CDS | 60.0% | |
!! | GCCTCATGTTGGAAGCGCCA+CGG | + | chr4.2:87730957-87730976 | MS.gene33396:CDS | 60.0% |
ACACGGCGCGTCAATCCGTG+CGG | + | chr4.2:87728358-87728377 | MS.gene33396:CDS | 65.0% | |
GCGTCAATCCGTGCGGTGGT+CGG | + | chr4.2:87728365-87728384 | MS.gene33396:CDS | 65.0% | |
CGGCGCGTCAATCCGTGCGG+TGG | + | chr4.2:87728361-87728380 | MS.gene33396:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 87728233 | 87731068 | 87728233 | ID=MS.gene33396 |
chr4.2 | mRNA | 87728233 | 87731068 | 87728233 | ID=MS.gene33396.t1;Parent=MS.gene33396 |
chr4.2 | exon | 87728233 | 87728658 | 87728233 | ID=MS.gene33396.t1.exon1;Parent=MS.gene33396.t1 |
chr4.2 | CDS | 87728233 | 87728658 | 87728233 | ID=cds.MS.gene33396.t1;Parent=MS.gene33396.t1 |
chr4.2 | exon | 87730550 | 87731068 | 87730550 | ID=MS.gene33396.t1.exon2;Parent=MS.gene33396.t1 |
chr4.2 | CDS | 87730550 | 87731068 | 87730550 | ID=cds.MS.gene33396.t1;Parent=MS.gene33396.t1 |
Gene Sequence |
Protein sequence |