Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24947.t1 | XP_013454758.1 | 95.8 | 313 | 13 | 0 | 1 | 313 | 1 | 313 | 1.50E-168 | 602.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24947.t1 | Q9CA90 | 73.2 | 313 | 84 | 0 | 1 | 313 | 1 | 313 | 1.1e-130 | 467.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24947.t1 | A0A072UGC3 | 95.8 | 313 | 13 | 0 | 1 | 313 | 1 | 313 | 1.1e-168 | 602.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene24947 | MS.gene019404 | PPI |
MS.gene23624 | MS.gene24947 | PPI |
MS.gene37508 | MS.gene24947 | PPI |
MS.gene019406 | MS.gene24947 | PPI |
MS.gene24947 | MS.gene37512 | PPI |
MS.gene87848 | MS.gene24947 | PPI |
MS.gene23633 | MS.gene24947 | PPI |
MS.gene065032 | MS.gene24947 | PPI |
MS.gene74946 | MS.gene24947 | PPI |
MS.gene76198 | MS.gene24947 | PPI |
MS.gene24947 | MS.gene019405 | PPI |
MS.gene24947 | MS.gene87842 | PPI |
MS.gene87846 | MS.gene24947 | PPI |
MS.gene24947 | MS.gene37515 | PPI |
MS.gene029300 | MS.gene24947 | PPI |
MS.gene24947 | MS.gene37513 | PPI |
MS.gene23623 | MS.gene24947 | PPI |
MS.gene24947 | MS.gene019402 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24947.t1 | MTR_4g013100 | 88.535 | 314 | 35 | 1 | 1 | 313 | 1 | 314 | 0.0 | 573 |
MS.gene24947.t1 | MTR_4g013135 | 95.847 | 313 | 13 | 0 | 1 | 313 | 1 | 313 | 0.0 | 570 |
MS.gene24947.t1 | MTR_4g013090 | 88.179 | 313 | 37 | 0 | 1 | 313 | 1 | 313 | 0.0 | 570 |
MS.gene24947.t1 | MTR_4g012960 | 84.665 | 313 | 45 | 1 | 1 | 313 | 1 | 310 | 0.0 | 550 |
MS.gene24947.t1 | MTR_2g101840 | 61.465 | 314 | 120 | 1 | 1 | 313 | 1 | 314 | 8.79e-133 | 380 |
MS.gene24947.t1 | MTR_8g033390 | 42.553 | 282 | 157 | 2 | 37 | 313 | 42 | 323 | 2.57e-84 | 257 |
MS.gene24947.t1 | MTR_8g033400 | 42.014 | 288 | 157 | 3 | 33 | 313 | 49 | 333 | 3.23e-81 | 249 |
MS.gene24947.t1 | MTR_8g033410 | 39.414 | 307 | 175 | 3 | 15 | 313 | 23 | 326 | 1.48e-80 | 247 |
MS.gene24947.t1 | MTR_7g075830 | 42.857 | 266 | 137 | 4 | 61 | 312 | 50 | 314 | 5.46e-66 | 210 |
MS.gene24947.t1 | MTR_4g013040 | 81.818 | 77 | 14 | 0 | 65 | 141 | 4 | 80 | 5.95e-37 | 131 |
MS.gene24947.t1 | MTR_1g112510 | 32.646 | 291 | 170 | 7 | 43 | 308 | 60 | 349 | 2.01e-33 | 127 |
MS.gene24947.t1 | MTR_4g005880 | 30.916 | 262 | 162 | 5 | 67 | 313 | 151 | 408 | 6.02e-30 | 119 |
MS.gene24947.t1 | MTR_1g107480 | 29.688 | 256 | 169 | 6 | 67 | 313 | 118 | 371 | 1.26e-28 | 115 |
MS.gene24947.t1 | MTR_3g005970 | 27.907 | 258 | 163 | 6 | 58 | 295 | 108 | 362 | 1.07e-23 | 100 |
MS.gene24947.t1 | MTR_6g007170 | 29.134 | 254 | 169 | 6 | 62 | 306 | 116 | 367 | 2.31e-22 | 96.7 |
MS.gene24947.t1 | MTR_7g078990 | 24.786 | 234 | 165 | 3 | 81 | 304 | 88 | 320 | 2.19e-15 | 77.0 |
MS.gene24947.t1 | MTR_6g007175 | 25.806 | 248 | 166 | 5 | 62 | 306 | 85 | 317 | 8.30e-15 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24947.t1 | AT1G79870 | 73.163 | 313 | 84 | 0 | 1 | 313 | 1 | 313 | 1.14e-163 | 458 |
MS.gene24947.t1 | AT1G79870 | 69.010 | 313 | 78 | 1 | 1 | 313 | 1 | 294 | 4.82e-147 | 415 |
MS.gene24947.t1 | AT1G12550 | 48.026 | 304 | 153 | 3 | 13 | 312 | 18 | 320 | 2.10e-99 | 295 |
MS.gene24947.t1 | AT2G45630 | 42.568 | 296 | 167 | 3 | 21 | 313 | 43 | 338 | 2.67e-84 | 257 |
MS.gene24947.t1 | AT1G17745 | 32.692 | 260 | 160 | 7 | 67 | 313 | 145 | 402 | 8.97e-33 | 127 |
MS.gene24947.t1 | AT1G68010 | 31.379 | 290 | 175 | 5 | 43 | 308 | 60 | 349 | 3.76e-31 | 120 |
MS.gene24947.t1 | AT4G34200 | 30.859 | 256 | 166 | 6 | 67 | 313 | 124 | 377 | 5.61e-31 | 122 |
MS.gene24947.t1 | AT1G68010 | 31.884 | 276 | 164 | 5 | 43 | 294 | 60 | 335 | 1.12e-30 | 119 |
MS.gene24947.t1 | AT1G68010 | 31.271 | 291 | 175 | 6 | 43 | 308 | 60 | 350 | 2.19e-29 | 115 |
MS.gene24947.t1 | AT3G19480 | 30.078 | 256 | 168 | 6 | 67 | 313 | 109 | 362 | 1.26e-28 | 115 |
MS.gene24947.t1 | AT1G17745 | 29.965 | 287 | 159 | 9 | 67 | 313 | 145 | 429 | 1.13e-26 | 110 |
MS.gene24947.t1 | AT1G72190 | 29.644 | 253 | 158 | 5 | 58 | 295 | 106 | 353 | 8.82e-25 | 103 |
MS.gene24947.t1 | AT5G14780 | 30.041 | 243 | 161 | 5 | 76 | 310 | 102 | 343 | 1.99e-23 | 99.0 |
MS.gene24947.t1 | AT5G14780 | 30.041 | 243 | 161 | 5 | 76 | 310 | 114 | 355 | 2.02e-23 | 99.4 |
MS.gene24947.t1 | AT5G14780 | 30.041 | 243 | 161 | 5 | 76 | 310 | 128 | 369 | 2.93e-23 | 99.0 |
MS.gene24947.t1 | AT2G45630 | 35.156 | 128 | 81 | 2 | 21 | 146 | 43 | 170 | 2.37e-21 | 89.7 |
MS.gene24947.t1 | AT5G28310 | 33.846 | 195 | 73 | 7 | 123 | 313 | 91 | 233 | 2.78e-19 | 85.5 |
MS.gene24947.t1 | AT1G01510 | 23.750 | 240 | 164 | 3 | 81 | 304 | 96 | 332 | 2.57e-13 | 70.9 |
Find 88 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGAAAACCATTGGCATTAT+TGG | 0.108448 | 4.1:-82948881 | MS.gene24947:CDS |
CTTGGATAGTACTTGTATTT+TGG | 0.175534 | 4.1:+82948770 | None:intergenic |
CATGTTCCCGAAGAACTATT+TGG | 0.241347 | 4.1:-82948524 | MS.gene24947:CDS |
GCTACAATCTTTATCGCATT+TGG | 0.249078 | 4.1:-82951309 | MS.gene24947:CDS |
GACTGATGATGTTGCTGATT+TGG | 0.253175 | 4.1:-82951077 | MS.gene24947:CDS |
TGCATTACTTGAAGGTCGTT+TGG | 0.291318 | 4.1:-82948582 | MS.gene24947:CDS |
TTGAGTTCTTGATCTAAGTA+TGG | 0.305679 | 4.1:+82951337 | None:intergenic |
GATTTGTCAGAAGTGGAAAT+TGG | 0.306236 | 4.1:-82951006 | MS.gene24947:CDS |
TACGCTTCTTCGGAGGATTT+CGG | 0.309133 | 4.1:-82951038 | MS.gene24947:CDS |
GATGTTGCTGATTTGGCTAT+TGG | 0.316026 | 4.1:-82951070 | MS.gene24947:CDS |
CTACAATCTTTATCGCATTT+GGG | 0.335483 | 4.1:-82951308 | MS.gene24947:CDS |
TACCTCGGCCAATGTTAATT+AGG | 0.343446 | 4.1:+82948633 | None:intergenic |
TTCTAGCCCAAATAGTTCTT+CGG | 0.356251 | 4.1:+82948517 | None:intergenic |
TCTAGCCCAAATAGTTCTTC+GGG | 0.361285 | 4.1:+82948518 | None:intergenic |
GCATTACTTGAAGGTCGTTT+GGG | 0.382800 | 4.1:-82948581 | MS.gene24947:CDS |
GCCATGGCCGACCTTCTTCT+AGG | 0.398609 | 4.1:-82948443 | MS.gene24947:CDS |
AACTTGGAGGCTCATTTCCT+TGG | 0.398981 | 4.1:-82948419 | MS.gene24947:CDS |
ATTAAAACCTTCAGCTCTCT+TGG | 0.401991 | 4.1:+82948832 | None:intergenic |
GTTTGATCCTTACGCTTCTT+CGG | 0.404719 | 4.1:-82951048 | MS.gene24947:CDS |
ACCATTGGCATTATTGGAAT+GGG | 0.410967 | 4.1:-82948875 | MS.gene24947:CDS |
ATGTTCCCGAAGAACTATTT+GGG | 0.421570 | 4.1:-82948523 | MS.gene24947:CDS |
CGGGAGGTCATTAATGCAAT+TGG | 0.423538 | 4.1:-82948668 | MS.gene24947:CDS |
CTTTGGAGTTCTAGAATAGT+AGG | 0.425937 | 4.1:+82948799 | None:intergenic |
AACCATTGGCATTATTGGAA+TGG | 0.435784 | 4.1:-82948876 | MS.gene24947:CDS |
AAACTCATCACATCATCAAC+CGG | 0.440972 | 4.1:-82948688 | MS.gene24947:CDS |
CTTAACAAGTGTAAGGAGAA+AGG | 0.448740 | 4.1:-82951130 | MS.gene24947:CDS |
CGACCTTCTTCTAGGAAACT+TGG | 0.454624 | 4.1:-82948435 | MS.gene24947:CDS |
AGCATCCAACTGCGACATAC+TGG | 0.457202 | 4.1:-82948735 | MS.gene24947:CDS |
CTGGTCTCTGCATTACTTGA+AGG | 0.461779 | 4.1:-82948590 | MS.gene24947:CDS |
GAAGGTCGTTTGGGTGGTGC+TGG | 0.462451 | 4.1:-82948572 | MS.gene24947:CDS |
AAAGCCACTGTTAACTCCCT+TGG | 0.464385 | 4.1:-82948396 | MS.gene24947:CDS |
TGATGAGTTTCCTCTGTAAG+AGG | 0.469038 | 4.1:+82948701 | None:intergenic |
ATCAACACCAACGCTATAGC+TGG | 0.469096 | 4.1:+82951162 | None:intergenic |
CTGGAAACAATCTCAAGCTT+CGG | 0.481879 | 4.1:+82951181 | None:intergenic |
ATTATTGGAATGGGAAGGAT+TGG | 0.483559 | 4.1:-82948866 | MS.gene24947:CDS |
TTAACAAGTGTAAGGAGAAA+GGG | 0.494005 | 4.1:-82951129 | MS.gene24947:CDS |
TGCTTCAATGAGGTTAGAAT+CGG | 0.502193 | 4.1:+82951207 | None:intergenic |
GATTGATCTTAACAAGTGTA+AGG | 0.511207 | 4.1:-82951137 | MS.gene24947:CDS |
ACATCATCAGTCAAAACATC+AGG | 0.513625 | 4.1:+82951088 | None:intergenic |
ATGTTAATTAGGACACCCTT+CGG | 0.518527 | 4.1:+82948644 | None:intergenic |
GCGTCAATTCGTGCGGTGGT+CGG | 0.520525 | 4.1:-82951247 | MS.gene24947:CDS |
TCCCATTCCAATAATGCCAA+TGG | 0.521994 | 4.1:+82948874 | None:intergenic |
CAGTTCTCTGGGAAAACCAT+TGG | 0.522702 | 4.1:-82948890 | MS.gene24947:CDS |
TGTGATCGATTTGTCAGAAG+TGG | 0.532616 | 4.1:-82951013 | MS.gene24947:CDS |
GCAGTTGCCAAGAGAGCTGA+AGG | 0.536835 | 4.1:-82948839 | MS.gene24947:CDS |
TTATTGCCTCATGTTGGAAG+CGG | 0.540920 | 4.1:-82948485 | MS.gene24947:CDS |
CATTAATGCAATTGGTCCGA+AGG | 0.549098 | 4.1:-82948660 | MS.gene24947:CDS |
CCTCCAAGTTTCCTAGAAGA+AGG | 0.549489 | 4.1:+82948432 | None:intergenic |
GTGGTCGGAAATGCAAGCGC+CGG | 0.549559 | 4.1:-82951232 | MS.gene24947:CDS |
TCCTAGAAGAAGGTCGGCCA+TGG | 0.550756 | 4.1:+82948442 | None:intergenic |
CCTTCTTCTAGGAAACTTGG+AGG | 0.552158 | 4.1:-82948432 | MS.gene24947:CDS |
GATGCTAACTCAACAAGACT+TGG | 0.554749 | 4.1:+82948752 | None:intergenic |
GGTAGAAACTCGAGCTGCCA+TGG | 0.556384 | 4.1:-82948459 | MS.gene24947:CDS |
GAGTTAACAGTGGCTTTCCA+AGG | 0.557323 | 4.1:+82948402 | None:intergenic |
CAATTGCATTAATGACCTCC+CGG | 0.564836 | 4.1:+82948669 | None:intergenic |
TGTTGCCTGCCCTCTTACAG+AGG | 0.566261 | 4.1:-82948711 | MS.gene24947:CDS |
AGTTTCCTCTGTAAGAGGGC+AGG | 0.567739 | 4.1:+82948706 | None:intergenic |
GTCCTAATTAACATTGGCCG+AGG | 0.572801 | 4.1:-82948635 | MS.gene24947:CDS |
AGTAATGCAGAGACCAGCTC+TGG | 0.572833 | 4.1:+82948596 | None:intergenic |
TTGGCATTATTGGAATGGGA+AGG | 0.585206 | 4.1:-82948871 | MS.gene24947:CDS |
TGATTATAAGTTGACAACTA+AGG | 0.586743 | 4.1:-82950975 | MS.gene24947:intron |
GCATGTTGATGAACCAGAGC+TGG | 0.593862 | 4.1:-82948609 | MS.gene24947:CDS |
CTATTCTAGAACTCCAAAGC+AGG | 0.594716 | 4.1:-82948795 | MS.gene24947:CDS |
CGGCGCGTCAATTCGTGCGG+TGG | 0.598767 | 4.1:-82951251 | MS.gene24947:CDS |
GCCTCATGTTGGAAGCGGCA+CGG | 0.602877 | 4.1:-82948480 | MS.gene24947:CDS |
AAATCCTCCGAAGAAGCGTA+AGG | 0.604514 | 4.1:+82951041 | None:intergenic |
ATTGTTTCCAGCTATAGCGT+TGG | 0.607959 | 4.1:-82951169 | MS.gene24947:CDS |
AACAACCAGTATGTCGCAGT+TGG | 0.611894 | 4.1:+82948730 | None:intergenic |
CGGCATGCAGATTAAACCAA+GGG | 0.612509 | 4.1:+82948380 | None:intergenic |
AATAGTTCTTCGGGAACATG+AGG | 0.622864 | 4.1:+82948527 | None:intergenic |
AAGGGTGTCCTAATTAACAT+TGG | 0.623755 | 4.1:-82948641 | MS.gene24947:CDS |
ACCGTGCCGCTTCCAACATG+AGG | 0.623796 | 4.1:+82948479 | None:intergenic |
TGATCCTTACGCTTCTTCGG+AGG | 0.626638 | 4.1:-82951045 | MS.gene24947:CDS |
ATTAATGCAATTGGTCCGAA+GGG | 0.631084 | 4.1:-82948659 | MS.gene24947:CDS |
GTTGTCTTATTGCCTCATGT+TGG | 0.632321 | 4.1:-82948491 | MS.gene24947:CDS |
GTTCATCAACATGCGTACCT+CGG | 0.634450 | 4.1:+82948618 | None:intergenic |
CAAGTTTCCTAGAAGAAGGT+CGG | 0.637549 | 4.1:+82948436 | None:intergenic |
AATGAGGTTAGAATCGGCGC+CGG | 0.642307 | 4.1:+82951213 | None:intergenic |
GATGAGTTTCCTCTGTAAGA+GGG | 0.642427 | 4.1:+82948702 | None:intergenic |
GCTTCGGCAATGCTTCAATG+AGG | 0.644180 | 4.1:+82951197 | None:intergenic |
TTACTTGAAGGTCGTTTGGG+TGG | 0.644249 | 4.1:-82948578 | MS.gene24947:CDS |
AACTCATCACATCATCAACC+GGG | 0.655089 | 4.1:-82948687 | MS.gene24947:CDS |
GCGGCATGCAGATTAAACCA+AGG | 0.659732 | 4.1:+82948379 | None:intergenic |
ACACGGCGCGTCAATTCGTG+CGG | 0.666825 | 4.1:-82951254 | MS.gene24947:CDS |
TAAACCAAGGGAGTTAACAG+TGG | 0.668491 | 4.1:+82948392 | None:intergenic |
AGAAGTGGAAATTGGAAGCG+TGG | 0.693078 | 4.1:-82950998 | MS.gene24947:CDS |
ATGGAATTACTTTAGCTACG+AGG | 0.743135 | 4.1:+82951356 | None:intergenic |
TCATCACATCATCAACCGGG+AGG | 0.750770 | 4.1:-82948684 | MS.gene24947:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTGTAAATATTGAAATAT+AGG | + | chr4.1:82950651-82950670 | None:intergenic | 10.0% |
!!! | AAATAATTTATTTTTTCATC+CGG | - | chr4.1:82950843-82950862 | MS.gene24947:intron | 10.0% |
!!! | TGAAAAAATAAATTATTTTC+AGG | + | chr4.1:82950841-82950860 | None:intergenic | 10.0% |
!! | AGTGAAAAACATTTAAAAAT+TGG | - | chr4.1:82950690-82950709 | MS.gene24947:intron | 15.0% |
!! | TTATTAAAAGAACCTATTAA+TGG | + | chr4.1:82950571-82950590 | None:intergenic | 15.0% |
!!! | AAAATAAATTATTTTCAGGT+TGG | + | chr4.1:82950837-82950856 | None:intergenic | 15.0% |
!!! | ACATACATTAAATATGTTTT+AGG | - | chr4.1:82949662-82949681 | MS.gene24947:intron | 15.0% |
!!! | TTTATTGATAATGTATCTTA+TGG | - | chr4.1:82950308-82950327 | MS.gene24947:intron | 15.0% |
!!! | TTTTTCAATTAAGAATACAA+CGG | + | chr4.1:82949064-82949083 | None:intergenic | 15.0% |
!! | AAAAAATAAGTCAATCCAAA+CGG | + | chr4.1:82949374-82949393 | None:intergenic | 20.0% |
!! | AATATCATGTTATTCATTGT+AGG | - | chr4.1:82950082-82950101 | MS.gene24947:intron | 20.0% |
!! | AATCATAATGTTAACTGTTT+CGG | - | chr4.1:82949823-82949842 | MS.gene24947:intron | 20.0% |
!! | ATAAACTATAAGCTCAAAAA+TGG | + | chr4.1:82948917-82948936 | None:intergenic | 20.0% |
!! | ATATCATGTTATTCATTGTA+GGG | - | chr4.1:82950083-82950102 | MS.gene24947:intron | 20.0% |
!!! | TACATTAAATATGTTTTAGG+TGG | - | chr4.1:82949665-82949684 | MS.gene24947:intron | 20.0% |
!!! | TTAAAAGTTGAGATTTTTGT+GGG | + | chr4.1:82948489-82948508 | None:intergenic | 20.0% |
! | AAGCTAAAAAATTAGCCAAA+CGG | - | chr4.1:82949558-82949577 | MS.gene24947:intron | 25.0% |
! | AGTGAAAAATTGTGAATAGA+TGG | + | chr4.1:82949341-82949360 | None:intergenic | 25.0% |
! | ATAATGTATCTTATGGTTCA+TGG | - | chr4.1:82950315-82950334 | MS.gene24947:intron | 25.0% |
! | GCTAATTGAATTATGTTGTT+TGG | + | chr4.1:82949160-82949179 | None:intergenic | 25.0% |
! | GTTGATACTGTTAAAAATTG+TGG | - | chr4.1:82948862-82948881 | MS.gene24947:CDS | 25.0% |
! | TATTATTCATAAGCATGTCA+AGG | + | chr4.1:82949501-82949520 | None:intergenic | 25.0% |
!! | ATGTTGTTTGGTATATTTAG+CGG | + | chr4.1:82949148-82949167 | None:intergenic | 25.0% |
!! | GTTAAAAGTTGAGATTTTTG+TGG | + | chr4.1:82948490-82948509 | None:intergenic | 25.0% |
!! | TGATTATAAGTTGACAACTA+AGG | - | chr4.1:82948792-82948811 | MS.gene24947:CDS | 25.0% |
!!! | ATTATTTTCAGGTTGGAAAA+TGG | + | chr4.1:82950830-82950849 | None:intergenic | 25.0% |
!!! | TGGAACATAGTTTTAAATTG+TGG | - | chr4.1:82949685-82949704 | MS.gene24947:intron | 25.0% |
AGCTAAAAAATTAGCCAAAC+GGG | - | chr4.1:82949559-82949578 | MS.gene24947:intron | 30.0% | |
CTACAATCTTTATCGCATTT+GGG | - | chr4.1:82948459-82948478 | MS.gene24947:CDS | 30.0% | |
CTTGACTGAGTTTGATAAAA+AGG | - | chr4.1:82950046-82950065 | MS.gene24947:intron | 30.0% | |
GATTGATCTTAACAAGTGTA+AGG | - | chr4.1:82948630-82948649 | MS.gene24947:CDS | 30.0% | |
TACATGAGAATACACATAAC+CGG | + | chr4.1:82950791-82950810 | None:intergenic | 30.0% | |
TAGAGACACAATAAGACTTA+GGG | + | chr4.1:82949585-82949604 | None:intergenic | 30.0% | |
TGTCTTATAAGCTCATTTGA+TGG | - | chr4.1:82948949-82948968 | MS.gene24947:intron | 30.0% | |
TTAACAAGTGTAAGGAGAAA+GGG | - | chr4.1:82948638-82948657 | MS.gene24947:CDS | 30.0% | |
TTGAGTTCTTGATCTAAGTA+TGG | + | chr4.1:82948433-82948452 | None:intergenic | 30.0% | |
TTGGTATATTTAGCTGATAG+CGG | + | chr4.1:82949212-82949231 | None:intergenic | 30.0% | |
TTTGATGGAAAAGACATGTT+TGG | - | chr4.1:82948964-82948983 | MS.gene24947:intron | 30.0% | |
! | AAATACAGCTTCATTTTGCA+GGG | + | chr4.1:82950139-82950158 | None:intergenic | 30.0% |
! | AAATTGTGGTCTAGTTCAAT+AGG | - | chr4.1:82948876-82948895 | MS.gene24947:CDS | 30.0% |
! | ACATGCATGGAAATTGTTTT+AGG | - | chr4.1:82949714-82949733 | MS.gene24947:intron | 30.0% |
! | AGTTAGCTTATAGATGATAG+CGG | + | chr4.1:82949283-82949302 | None:intergenic | 30.0% |
! | CTTGGATAGTACTTGTATTT+TGG | + | chr4.1:82951000-82951019 | None:intergenic | 30.0% |
!! | TAAGTCTTATTGTGTCTCTA+GGG | - | chr4.1:82949585-82949604 | MS.gene24947:intron | 30.0% |
!! | TCTCAACTTTTAACTCAACA+CGG | - | chr4.1:82948496-82948515 | MS.gene24947:CDS | 30.0% |
!!! | AGCAGCATAGTTTTAAATTG+TGG | - | chr4.1:82949738-82949757 | MS.gene24947:intron | 30.0% |
AAACTCATCACATCATCAAC+CGG | - | chr4.1:82951079-82951098 | MS.gene24947:CDS | 35.0% | |
AAAGGAGTGAACAAAAGAGT+AGG | + | chr4.1:82950437-82950456 | None:intergenic | 35.0% | |
AACCATTGGCATTATTGGAA+TGG | - | chr4.1:82950891-82950910 | MS.gene24947:intron | 35.0% | |
AACTACGTGAGATTCAGAAA+TGG | + | chr4.1:82950163-82950182 | None:intergenic | 35.0% | |
ACATCATCAGTCAAAACATC+AGG | + | chr4.1:82948682-82948701 | None:intergenic | 35.0% | |
ACCATTGGCATTATTGGAAT+GGG | - | chr4.1:82950892-82950911 | MS.gene24947:intron | 35.0% | |
ATGATGAAGAGTGGAGATAA+AGG | + | chr4.1:82949903-82949922 | None:intergenic | 35.0% | |
ATGCAGTAGTGATCCTTAAT+GGG | + | chr4.1:82950521-82950540 | None:intergenic | 35.0% | |
ATGGAATTACTTTAGCTACG+AGG | + | chr4.1:82948414-82948433 | None:intergenic | 35.0% | |
ATGTTAATTAGGACACCCTT+CGG | + | chr4.1:82951126-82951145 | None:intergenic | 35.0% | |
ATGTTCCCGAAGAACTATTT+GGG | - | chr4.1:82951244-82951263 | MS.gene24947:CDS | 35.0% | |
ATTAAAACCTTCAGCTCTCT+TGG | + | chr4.1:82950938-82950957 | None:intergenic | 35.0% | |
ATTAATGCAATTGGTCCGAA+GGG | - | chr4.1:82951108-82951127 | MS.gene24947:CDS | 35.0% | |
ATTATTGGAATGGGAAGGAT+TGG | - | chr4.1:82950901-82950920 | MS.gene24947:intron | 35.0% | |
CTAGAGACACAATAAGACTT+AGG | + | chr4.1:82949586-82949605 | None:intergenic | 35.0% | |
CTTAACAAGTGTAAGGAGAA+AGG | - | chr4.1:82948637-82948656 | MS.gene24947:CDS | 35.0% | |
GAGTATAGTAGTGCTCTATT+AGG | - | chr4.1:82949874-82949893 | MS.gene24947:intron | 35.0% | |
GATCTATCATCATGTTGCAA+GGG | - | chr4.1:82950720-82950739 | MS.gene24947:intron | 35.0% | |
GATTTGTCAGAAGTGGAAAT+TGG | - | chr4.1:82948761-82948780 | MS.gene24947:CDS | 35.0% | |
GCTACAATCTTTATCGCATT+TGG | - | chr4.1:82948458-82948477 | MS.gene24947:CDS | 35.0% | |
GTGAATCTCATTGAATTGCA+CGG | - | chr4.1:82950190-82950209 | MS.gene24947:intron | 35.0% | |
TATGCAGTAGTGATCCTTAA+TGG | + | chr4.1:82950522-82950541 | None:intergenic | 35.0% | |
TGAACAAAAGAGTAGGTCTT+GGG | + | chr4.1:82950430-82950449 | None:intergenic | 35.0% | |
TGATCTATCATCATGTTGCA+AGG | - | chr4.1:82950719-82950738 | MS.gene24947:intron | 35.0% | |
TGATGAAGAGTGGAGATAAA+GGG | + | chr4.1:82949902-82949921 | None:intergenic | 35.0% | |
TGCTTCAATGAGGTTAGAAT+CGG | + | chr4.1:82948563-82948582 | None:intergenic | 35.0% | |
TTCTAGCCCAAATAGTTCTT+CGG | + | chr4.1:82951253-82951272 | None:intergenic | 35.0% | |
TTCTCTGCAATATCAAGACT+TGG | - | chr4.1:82949852-82949871 | MS.gene24947:intron | 35.0% | |
TTGTTGGAAGATTGCCAAAA+AGG | + | chr4.1:82950455-82950474 | None:intergenic | 35.0% | |
TTTATCTCCACTCTTCATCA+TGG | - | chr4.1:82949902-82949921 | MS.gene24947:intron | 35.0% | |
TTTCTGAATCTCACGTAGTT+AGG | - | chr4.1:82950163-82950182 | MS.gene24947:intron | 35.0% | |
! | AGCTAGCTTATAGATGATAG+CGG | + | chr4.1:82949316-82949335 | None:intergenic | 35.0% |
! | ATGAGTTGACGTTTCTAGAT+AGG | - | chr4.1:82949950-82949969 | MS.gene24947:intron | 35.0% |
! | CAAATACAGCTTCATTTTGC+AGG | + | chr4.1:82950140-82950159 | None:intergenic | 35.0% |
! | CACAGCTGAAACATAGTTTT+AGG | - | chr4.1:82949634-82949653 | MS.gene24947:intron | 35.0% |
! | CTCTTTTGTTCACTCCTTTT+TGG | - | chr4.1:82950438-82950457 | MS.gene24947:intron | 35.0% |
! | GAATCTCGATTTGATAACCT+CGG | - | chr4.1:82950390-82950409 | MS.gene24947:intron | 35.0% |
! | TATTTTCGTTGCAGTTCTCT+GGG | - | chr4.1:82950866-82950885 | MS.gene24947:intron | 35.0% |
! | TCTAGTTCAATAGGTCTGTT+TGG | - | chr4.1:82948885-82948904 | MS.gene24947:CDS | 35.0% |
!! | AAGGGTGTCCTAATTAACAT+TGG | - | chr4.1:82951126-82951145 | MS.gene24947:CDS | 35.0% |
!! | CTAAGTCTTATTGTGTCTCT+AGG | - | chr4.1:82949584-82949603 | MS.gene24947:intron | 35.0% |
!! | CTTTGGAGTTCTAGAATAGT+AGG | + | chr4.1:82950971-82950990 | None:intergenic | 35.0% |
!!! | ATTTTCAGGTTGGAAAATGG+AGG | + | chr4.1:82950827-82950846 | None:intergenic | 35.0% |
!!! | TTGTATTTTGGTTCCTGCTT+TGG | + | chr4.1:82950988-82951007 | None:intergenic | 35.0% |
!!! | TTTTCAGGTTGGAAAATGGA+GGG | + | chr4.1:82950826-82950845 | None:intergenic | 35.0% |
AACTCATCACATCATCAACC+GGG | - | chr4.1:82951080-82951099 | MS.gene24947:CDS | 40.0% | |
AATAGTTCTTCGGGAACATG+AGG | + | chr4.1:82951243-82951262 | None:intergenic | 40.0% | |
ACAAACCAATTTGAGGGACT+TGG | - | chr4.1:82950238-82950257 | MS.gene24947:intron | 40.0% | |
AGAAACCAAGTCCCTCAAAT+TGG | + | chr4.1:82950246-82950265 | None:intergenic | 40.0% | |
ATTGTTTCCAGCTATAGCGT+TGG | - | chr4.1:82948598-82948617 | MS.gene24947:CDS | 40.0% | |
CAAGTTTCCTAGAAGAAGGT+CGG | + | chr4.1:82951334-82951353 | None:intergenic | 40.0% | |
CAATTGCATTAATGACCTCC+CGG | + | chr4.1:82951101-82951120 | None:intergenic | 40.0% | |
CATGTTCCCGAAGAACTATT+TGG | - | chr4.1:82951243-82951262 | MS.gene24947:CDS | 40.0% | |
CATTAATGCAATTGGTCCGA+AGG | - | chr4.1:82951107-82951126 | MS.gene24947:CDS | 40.0% | |
CTGGAAACAATCTCAAGCTT+CGG | + | chr4.1:82948589-82948608 | None:intergenic | 40.0% | |
GAGAACTGCAACGAAAATAC+CGG | + | chr4.1:82950865-82950884 | None:intergenic | 40.0% | |
GATGAGTTTCCTCTGTAAGA+GGG | + | chr4.1:82951068-82951087 | None:intergenic | 40.0% | |
GATGCTAACTCAACAAGACT+TGG | + | chr4.1:82951018-82951037 | None:intergenic | 40.0% | |
GCATCCACAAACCAATTTGA+GGG | - | chr4.1:82950232-82950251 | MS.gene24947:intron | 40.0% | |
GCATTACTTGAAGGTCGTTT+GGG | - | chr4.1:82951186-82951205 | MS.gene24947:CDS | 40.0% | |
GGGAAAACCATTGGCATTAT+TGG | - | chr4.1:82950886-82950905 | MS.gene24947:intron | 40.0% | |
GTCACACTGCTCATTAAAAC+CGG | - | chr4.1:82950769-82950788 | MS.gene24947:intron | 40.0% | |
GTGAACAAAAGAGTAGGTCT+TGG | + | chr4.1:82950431-82950450 | None:intergenic | 40.0% | |
GTGATCCAATTCACCCATTA+AGG | - | chr4.1:82950505-82950524 | MS.gene24947:intron | 40.0% | |
GTTTGATCCTTACGCTTCTT+CGG | - | chr4.1:82948719-82948738 | MS.gene24947:CDS | 40.0% | |
TAAACCAAGGGAGTTAACAG+TGG | + | chr4.1:82951378-82951397 | None:intergenic | 40.0% | |
TACCTCGGCCAATGTTAATT+AGG | + | chr4.1:82951137-82951156 | None:intergenic | 40.0% | |
TCCCATTCCAATAATGCCAA+TGG | + | chr4.1:82950896-82950915 | None:intergenic | 40.0% | |
TCGATAACCATGATGAAGAG+TGG | + | chr4.1:82949912-82949931 | None:intergenic | 40.0% | |
TCTAGCCCAAATAGTTCTTC+GGG | + | chr4.1:82951252-82951271 | None:intergenic | 40.0% | |
TGATGAGTTTCCTCTGTAAG+AGG | + | chr4.1:82951069-82951088 | None:intergenic | 40.0% | |
TGCATCCACAAACCAATTTG+AGG | - | chr4.1:82950231-82950250 | MS.gene24947:intron | 40.0% | |
TGCATTACTTGAAGGTCGTT+TGG | - | chr4.1:82951185-82951204 | MS.gene24947:CDS | 40.0% | |
TGCTGAAACACGAGTTTGTA+TGG | + | chr4.1:82949987-82950006 | None:intergenic | 40.0% | |
TTATTGCCTCATGTTGGAAG+CGG | - | chr4.1:82951282-82951301 | MS.gene24947:CDS | 40.0% | |
TTGGCATTATTGGAATGGGA+AGG | - | chr4.1:82950896-82950915 | MS.gene24947:intron | 40.0% | |
! | AGATGTTTCTACTGCCTACT+GGG | + | chr4.1:82950480-82950499 | None:intergenic | 40.0% |
! | GACTGATGATGTTGCTGATT+TGG | - | chr4.1:82948690-82948709 | MS.gene24947:CDS | 40.0% |
! | GTATTTTCGTTGCAGTTCTC+TGG | - | chr4.1:82950865-82950884 | MS.gene24947:intron | 40.0% |
! | GTGATCCTTAATGGGTGAAT+TGG | + | chr4.1:82950513-82950532 | None:intergenic | 40.0% |
! | GTTGTCTTATTGCCTCATGT+TGG | - | chr4.1:82951276-82951295 | MS.gene24947:CDS | 40.0% |
!! | AAGTCCCTCAAATTGGTTTG+TGG | + | chr4.1:82950239-82950258 | None:intergenic | 40.0% |
!! | CTATTCTAGAACTCCAAAGC+AGG | - | chr4.1:82950972-82950991 | MS.gene24947:intron | 40.0% |
!! | GATGTTGCTGATTTGGCTAT+TGG | - | chr4.1:82948697-82948716 | MS.gene24947:CDS | 40.0% |
!! | TCACTAAACAAAGTGCCGTT+TGG | - | chr4.1:82949356-82949375 | MS.gene24947:intron | 40.0% |
!! | TGTGATCGATTTGTCAGAAG+TGG | - | chr4.1:82948754-82948773 | MS.gene24947:CDS | 40.0% |
!! | TTTCAGGTTGGAAAATGGAG+GGG | + | chr4.1:82950825-82950844 | None:intergenic | 40.0% |
AAAGCCACTGTTAACTCCCT+TGG | - | chr4.1:82951371-82951390 | MS.gene24947:CDS | 45.0% | |
AACAACCAGTATGTCGCAGT+TGG | + | chr4.1:82951040-82951059 | None:intergenic | 45.0% | |
AACTTGGAGGCTCATTTCCT+TGG | - | chr4.1:82951348-82951367 | MS.gene24947:CDS | 45.0% | |
AATAAGACTTAGGGCCCGTT+TGG | + | chr4.1:82949576-82949595 | None:intergenic | 45.0% | |
ACAAAAGAGTAGGTCTTGGG+TGG | + | chr4.1:82950427-82950446 | None:intergenic | 45.0% | |
ACGCTGCTCTTGCCATTAAT+AGG | - | chr4.1:82950556-82950575 | MS.gene24947:intron | 45.0% | |
AGAAGTGGAAATTGGAAGCG+TGG | - | chr4.1:82948769-82948788 | MS.gene24947:CDS | 45.0% | |
ATCAACACCAACGCTATAGC+TGG | + | chr4.1:82948608-82948627 | None:intergenic | 45.0% | |
ATCTTCCAACAATCCCCAGT+AGG | - | chr4.1:82950463-82950482 | MS.gene24947:intron | 45.0% | |
ATTGTGGTTCGCAACATGCA+TGG | - | chr4.1:82949701-82949720 | MS.gene24947:intron | 45.0% | |
CACGGTATGAGTTCAGTCAT+GGG | - | chr4.1:82950208-82950227 | MS.gene24947:intron | 45.0% | |
CCTCCAAGTTTCCTAGAAGA+AGG | + | chr4.1:82951338-82951357 | None:intergenic | 45.0% | |
CGGGAGGTCATTAATGCAAT+TGG | - | chr4.1:82951099-82951118 | MS.gene24947:CDS | 45.0% | |
CTGGTCTCTGCATTACTTGA+AGG | - | chr4.1:82951177-82951196 | MS.gene24947:CDS | 45.0% | |
GAGTTAACAGTGGCTTTCCA+AGG | + | chr4.1:82951368-82951387 | None:intergenic | 45.0% | |
GTCCTAATTAACATTGGCCG+AGG | - | chr4.1:82951132-82951151 | MS.gene24947:CDS | 45.0% | |
GTTCATCAACATGCGTACCT+CGG | + | chr4.1:82951152-82951171 | None:intergenic | 45.0% | |
TACGCTTCTTCGGAGGATTT+CGG | - | chr4.1:82948729-82948748 | MS.gene24947:CDS | 45.0% | |
TTACTTGAAGGTCGTTTGGG+TGG | - | chr4.1:82951189-82951208 | MS.gene24947:CDS | 45.0% | |
! | AAATCCTCCGAAGAAGCGTA+AGG | + | chr4.1:82948729-82948748 | None:intergenic | 45.0% |
! | CAGATGTTTCTACTGCCTAC+TGG | + | chr4.1:82950481-82950500 | None:intergenic | 45.0% |
! | CAGTTCTCTGGGAAAACCAT+TGG | - | chr4.1:82950877-82950896 | MS.gene24947:intron | 45.0% |
! | CCTTCTTCTAGGAAACTTGG+AGG | - | chr4.1:82951335-82951354 | MS.gene24947:CDS | 45.0% |
! | CGACCTTCTTCTAGGAAACT+TGG | - | chr4.1:82951332-82951351 | MS.gene24947:CDS | 45.0% |
! | CGATTTGATAACCTCGGTTC+CGG | - | chr4.1:82950396-82950415 | MS.gene24947:intron | 45.0% |
! | GATGTTTCTACTGCCTACTG+GGG | + | chr4.1:82950479-82950498 | None:intergenic | 45.0% |
! | GTCTTATTGTGTCTCTAGGG+TGG | - | chr4.1:82949588-82949607 | MS.gene24947:intron | 45.0% |
!! | TTCAGGTTGGAAAATGGAGG+GGG | + | chr4.1:82950824-82950843 | None:intergenic | 45.0% |
!! | ATAATAAGATTAAATTAATT+TGG | - | chr4.1:82950341-82950360 | MS.gene24947:intron | 5.0% |
!!! | TTTAATAATACTTTTATATT+TGG | - | chr4.1:82950583-82950602 | MS.gene24947:intron | 5.0% |
AATGAGGTTAGAATCGGCGC+CGG | + | chr4.1:82948557-82948576 | None:intergenic | 50.0% | |
AGAGTAGGTCTTGGGTGGTA+AGG | + | chr4.1:82950422-82950441 | None:intergenic | 50.0% | |
AGCATCCAACTGCGACATAC+TGG | - | chr4.1:82951032-82951051 | MS.gene24947:CDS | 50.0% | |
AGTAATGCAGAGACCAGCTC+TGG | + | chr4.1:82951174-82951193 | None:intergenic | 50.0% | |
AGTTTCCTCTGTAAGAGGGC+AGG | + | chr4.1:82951064-82951083 | None:intergenic | 50.0% | |
GCACGGTATGAGTTCAGTCA+TGG | - | chr4.1:82950207-82950226 | MS.gene24947:intron | 50.0% | |
GCTTCGGCAATGCTTCAATG+AGG | + | chr4.1:82948573-82948592 | None:intergenic | 50.0% | |
TACTGCCTACTGGGGATTGT+TGG | + | chr4.1:82950471-82950490 | None:intergenic | 50.0% | |
TCATCACATCATCAACCGGG+AGG | - | chr4.1:82951083-82951102 | MS.gene24947:CDS | 50.0% | |
TGATCCTTACGCTTCTTCGG+AGG | - | chr4.1:82948722-82948741 | MS.gene24947:CDS | 50.0% | |
! | GCATGTTGATGAACCAGAGC+TGG | - | chr4.1:82951158-82951177 | MS.gene24947:CDS | 50.0% |
!! | TCAGGTTGGAAAATGGAGGG+GGG | + | chr4.1:82950823-82950842 | None:intergenic | 50.0% |
!! | TTTGCAGGGAAGCACTGAGA+GGG | + | chr4.1:82950125-82950144 | None:intergenic | 50.0% |
!!! | TTTTGCAGGGAAGCACTGAG+AGG | + | chr4.1:82950126-82950145 | None:intergenic | 50.0% |
AATGGCAAGAGCAGCGTCAC+AGG | + | chr4.1:82950553-82950572 | None:intergenic | 55.0% | |
GCAGTTGCCAAGAGAGCTGA+AGG | - | chr4.1:82950928-82950947 | MS.gene24947:intron | 55.0% | |
GGTAGAAACTCGAGCTGCCA+TGG | - | chr4.1:82951308-82951327 | MS.gene24947:CDS | 55.0% | |
GTTGGAAAATGGAGGGGGGA+GGG | + | chr4.1:82950819-82950838 | None:intergenic | 55.0% | |
TAGGTCTTGGGTGGTAAGGC+CGG | + | chr4.1:82950418-82950437 | None:intergenic | 55.0% | |
TCCTAGAAGAAGGTCGGCCA+TGG | + | chr4.1:82951328-82951347 | None:intergenic | 55.0% | |
TGTTGCCTGCCCTCTTACAG+AGG | - | chr4.1:82951056-82951075 | MS.gene24947:CDS | 55.0% | |
TTGGAAAATGGAGGGGGGAG+GGG | + | chr4.1:82950818-82950837 | None:intergenic | 55.0% | |
! | GTGGTTTGCAGCTGCAGTCA+TGG | - | chr4.1:82949757-82949776 | MS.gene24947:intron | 55.0% |
ACACGGCGCGTCAATTCGTG+CGG | - | chr4.1:82948513-82948532 | MS.gene24947:CDS | 60.0% | |
GAAGGTCGTTTGGGTGGTGC+TGG | - | chr4.1:82951195-82951214 | MS.gene24947:CDS | 60.0% | |
GCCATGGCCGACCTTCTTCT+AGG | - | chr4.1:82951324-82951343 | MS.gene24947:CDS | 60.0% | |
GCCTCATGTTGGAAGCGGCA+CGG | - | chr4.1:82951287-82951306 | MS.gene24947:CDS | 60.0% | |
GCGTCAATTCGTGCGGTGGT+CGG | - | chr4.1:82948520-82948539 | MS.gene24947:CDS | 60.0% | |
GGTTGGAAAATGGAGGGGGG+AGG | + | chr4.1:82950820-82950839 | None:intergenic | 60.0% | |
GTGGTCGGAAATGCAAGCGC+CGG | - | chr4.1:82948535-82948554 | MS.gene24947:CDS | 60.0% | |
TGGAAAATGGAGGGGGGAGG+GGG | + | chr4.1:82950817-82950836 | None:intergenic | 60.0% | |
!! | ACCGTGCCGCTTCCAACATG+AGG | + | chr4.1:82951291-82951310 | None:intergenic | 60.0% |
GGAAAATGGAGGGGGGAGGG+GGG | + | chr4.1:82950816-82950835 | None:intergenic | 65.0% | |
CGGCGCGTCAATTCGTGCGG+TGG | - | chr4.1:82948516-82948535 | MS.gene24947:CDS | 70.0% | |
GGGTGGTAAGGCCGGAACCG+AGG | + | chr4.1:82950410-82950429 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 82948391 | 82951398 | 82948391 | ID=MS.gene24947 |
chr4.1 | mRNA | 82948391 | 82951398 | 82948391 | ID=MS.gene24947.t1;Parent=MS.gene24947 |
chr4.1 | exon | 82950976 | 82951398 | 82950976 | ID=MS.gene24947.t1.exon1;Parent=MS.gene24947.t1 |
chr4.1 | CDS | 82950976 | 82951398 | 82950976 | ID=cds.MS.gene24947.t1;Parent=MS.gene24947.t1 |
chr4.1 | exon | 82948391 | 82948909 | 82948391 | ID=MS.gene24947.t1.exon2;Parent=MS.gene24947.t1 |
chr4.1 | CDS | 82948391 | 82948909 | 82948391 | ID=cds.MS.gene24947.t1;Parent=MS.gene24947.t1 |
Gene Sequence |
Protein sequence |