AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24947


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24947.t1 MTR_4g013100 88.535 314 35 1 1 313 1 314 0.0 573
MS.gene24947.t1 MTR_4g013135 95.847 313 13 0 1 313 1 313 0.0 570
MS.gene24947.t1 MTR_4g013090 88.179 313 37 0 1 313 1 313 0.0 570
MS.gene24947.t1 MTR_4g012960 84.665 313 45 1 1 313 1 310 0.0 550
MS.gene24947.t1 MTR_2g101840 61.465 314 120 1 1 313 1 314 8.79e-133 380
MS.gene24947.t1 MTR_8g033390 42.553 282 157 2 37 313 42 323 2.57e-84 257
MS.gene24947.t1 MTR_8g033400 42.014 288 157 3 33 313 49 333 3.23e-81 249
MS.gene24947.t1 MTR_8g033410 39.414 307 175 3 15 313 23 326 1.48e-80 247
MS.gene24947.t1 MTR_7g075830 42.857 266 137 4 61 312 50 314 5.46e-66 210
MS.gene24947.t1 MTR_4g013040 81.818 77 14 0 65 141 4 80 5.95e-37 131
MS.gene24947.t1 MTR_1g112510 32.646 291 170 7 43 308 60 349 2.01e-33 127
MS.gene24947.t1 MTR_4g005880 30.916 262 162 5 67 313 151 408 6.02e-30 119
MS.gene24947.t1 MTR_1g107480 29.688 256 169 6 67 313 118 371 1.26e-28 115
MS.gene24947.t1 MTR_3g005970 27.907 258 163 6 58 295 108 362 1.07e-23 100
MS.gene24947.t1 MTR_6g007170 29.134 254 169 6 62 306 116 367 2.31e-22 96.7
MS.gene24947.t1 MTR_7g078990 24.786 234 165 3 81 304 88 320 2.19e-15 77.0
MS.gene24947.t1 MTR_6g007175 25.806 248 166 5 62 306 85 317 8.30e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24947.t1 AT1G79870 73.163 313 84 0 1 313 1 313 1.14e-163 458
MS.gene24947.t1 AT1G79870 69.010 313 78 1 1 313 1 294 4.82e-147 415
MS.gene24947.t1 AT1G12550 48.026 304 153 3 13 312 18 320 2.10e-99 295
MS.gene24947.t1 AT2G45630 42.568 296 167 3 21 313 43 338 2.67e-84 257
MS.gene24947.t1 AT1G17745 32.692 260 160 7 67 313 145 402 8.97e-33 127
MS.gene24947.t1 AT1G68010 31.379 290 175 5 43 308 60 349 3.76e-31 120
MS.gene24947.t1 AT4G34200 30.859 256 166 6 67 313 124 377 5.61e-31 122
MS.gene24947.t1 AT1G68010 31.884 276 164 5 43 294 60 335 1.12e-30 119
MS.gene24947.t1 AT1G68010 31.271 291 175 6 43 308 60 350 2.19e-29 115
MS.gene24947.t1 AT3G19480 30.078 256 168 6 67 313 109 362 1.26e-28 115
MS.gene24947.t1 AT1G17745 29.965 287 159 9 67 313 145 429 1.13e-26 110
MS.gene24947.t1 AT1G72190 29.644 253 158 5 58 295 106 353 8.82e-25 103
MS.gene24947.t1 AT5G14780 30.041 243 161 5 76 310 102 343 1.99e-23 99.0
MS.gene24947.t1 AT5G14780 30.041 243 161 5 76 310 114 355 2.02e-23 99.4
MS.gene24947.t1 AT5G14780 30.041 243 161 5 76 310 128 369 2.93e-23 99.0
MS.gene24947.t1 AT2G45630 35.156 128 81 2 21 146 43 170 2.37e-21 89.7
MS.gene24947.t1 AT5G28310 33.846 195 73 7 123 313 91 233 2.78e-19 85.5
MS.gene24947.t1 AT1G01510 23.750 240 164 3 81 304 96 332 2.57e-13 70.9

Find 88 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAAACCATTGGCATTAT+TGG 0.108448 4.1:-82948881 MS.gene24947:CDS
CTTGGATAGTACTTGTATTT+TGG 0.175534 4.1:+82948770 None:intergenic
CATGTTCCCGAAGAACTATT+TGG 0.241347 4.1:-82948524 MS.gene24947:CDS
GCTACAATCTTTATCGCATT+TGG 0.249078 4.1:-82951309 MS.gene24947:CDS
GACTGATGATGTTGCTGATT+TGG 0.253175 4.1:-82951077 MS.gene24947:CDS
TGCATTACTTGAAGGTCGTT+TGG 0.291318 4.1:-82948582 MS.gene24947:CDS
TTGAGTTCTTGATCTAAGTA+TGG 0.305679 4.1:+82951337 None:intergenic
GATTTGTCAGAAGTGGAAAT+TGG 0.306236 4.1:-82951006 MS.gene24947:CDS
TACGCTTCTTCGGAGGATTT+CGG 0.309133 4.1:-82951038 MS.gene24947:CDS
GATGTTGCTGATTTGGCTAT+TGG 0.316026 4.1:-82951070 MS.gene24947:CDS
CTACAATCTTTATCGCATTT+GGG 0.335483 4.1:-82951308 MS.gene24947:CDS
TACCTCGGCCAATGTTAATT+AGG 0.343446 4.1:+82948633 None:intergenic
TTCTAGCCCAAATAGTTCTT+CGG 0.356251 4.1:+82948517 None:intergenic
TCTAGCCCAAATAGTTCTTC+GGG 0.361285 4.1:+82948518 None:intergenic
GCATTACTTGAAGGTCGTTT+GGG 0.382800 4.1:-82948581 MS.gene24947:CDS
GCCATGGCCGACCTTCTTCT+AGG 0.398609 4.1:-82948443 MS.gene24947:CDS
AACTTGGAGGCTCATTTCCT+TGG 0.398981 4.1:-82948419 MS.gene24947:CDS
ATTAAAACCTTCAGCTCTCT+TGG 0.401991 4.1:+82948832 None:intergenic
GTTTGATCCTTACGCTTCTT+CGG 0.404719 4.1:-82951048 MS.gene24947:CDS
ACCATTGGCATTATTGGAAT+GGG 0.410967 4.1:-82948875 MS.gene24947:CDS
ATGTTCCCGAAGAACTATTT+GGG 0.421570 4.1:-82948523 MS.gene24947:CDS
CGGGAGGTCATTAATGCAAT+TGG 0.423538 4.1:-82948668 MS.gene24947:CDS
CTTTGGAGTTCTAGAATAGT+AGG 0.425937 4.1:+82948799 None:intergenic
AACCATTGGCATTATTGGAA+TGG 0.435784 4.1:-82948876 MS.gene24947:CDS
AAACTCATCACATCATCAAC+CGG 0.440972 4.1:-82948688 MS.gene24947:CDS
CTTAACAAGTGTAAGGAGAA+AGG 0.448740 4.1:-82951130 MS.gene24947:CDS
CGACCTTCTTCTAGGAAACT+TGG 0.454624 4.1:-82948435 MS.gene24947:CDS
AGCATCCAACTGCGACATAC+TGG 0.457202 4.1:-82948735 MS.gene24947:CDS
CTGGTCTCTGCATTACTTGA+AGG 0.461779 4.1:-82948590 MS.gene24947:CDS
GAAGGTCGTTTGGGTGGTGC+TGG 0.462451 4.1:-82948572 MS.gene24947:CDS
AAAGCCACTGTTAACTCCCT+TGG 0.464385 4.1:-82948396 MS.gene24947:CDS
TGATGAGTTTCCTCTGTAAG+AGG 0.469038 4.1:+82948701 None:intergenic
ATCAACACCAACGCTATAGC+TGG 0.469096 4.1:+82951162 None:intergenic
CTGGAAACAATCTCAAGCTT+CGG 0.481879 4.1:+82951181 None:intergenic
ATTATTGGAATGGGAAGGAT+TGG 0.483559 4.1:-82948866 MS.gene24947:CDS
TTAACAAGTGTAAGGAGAAA+GGG 0.494005 4.1:-82951129 MS.gene24947:CDS
TGCTTCAATGAGGTTAGAAT+CGG 0.502193 4.1:+82951207 None:intergenic
GATTGATCTTAACAAGTGTA+AGG 0.511207 4.1:-82951137 MS.gene24947:CDS
ACATCATCAGTCAAAACATC+AGG 0.513625 4.1:+82951088 None:intergenic
ATGTTAATTAGGACACCCTT+CGG 0.518527 4.1:+82948644 None:intergenic
GCGTCAATTCGTGCGGTGGT+CGG 0.520525 4.1:-82951247 MS.gene24947:CDS
TCCCATTCCAATAATGCCAA+TGG 0.521994 4.1:+82948874 None:intergenic
CAGTTCTCTGGGAAAACCAT+TGG 0.522702 4.1:-82948890 MS.gene24947:CDS
TGTGATCGATTTGTCAGAAG+TGG 0.532616 4.1:-82951013 MS.gene24947:CDS
GCAGTTGCCAAGAGAGCTGA+AGG 0.536835 4.1:-82948839 MS.gene24947:CDS
TTATTGCCTCATGTTGGAAG+CGG 0.540920 4.1:-82948485 MS.gene24947:CDS
CATTAATGCAATTGGTCCGA+AGG 0.549098 4.1:-82948660 MS.gene24947:CDS
CCTCCAAGTTTCCTAGAAGA+AGG 0.549489 4.1:+82948432 None:intergenic
GTGGTCGGAAATGCAAGCGC+CGG 0.549559 4.1:-82951232 MS.gene24947:CDS
TCCTAGAAGAAGGTCGGCCA+TGG 0.550756 4.1:+82948442 None:intergenic
CCTTCTTCTAGGAAACTTGG+AGG 0.552158 4.1:-82948432 MS.gene24947:CDS
GATGCTAACTCAACAAGACT+TGG 0.554749 4.1:+82948752 None:intergenic
GGTAGAAACTCGAGCTGCCA+TGG 0.556384 4.1:-82948459 MS.gene24947:CDS
GAGTTAACAGTGGCTTTCCA+AGG 0.557323 4.1:+82948402 None:intergenic
CAATTGCATTAATGACCTCC+CGG 0.564836 4.1:+82948669 None:intergenic
TGTTGCCTGCCCTCTTACAG+AGG 0.566261 4.1:-82948711 MS.gene24947:CDS
AGTTTCCTCTGTAAGAGGGC+AGG 0.567739 4.1:+82948706 None:intergenic
GTCCTAATTAACATTGGCCG+AGG 0.572801 4.1:-82948635 MS.gene24947:CDS
AGTAATGCAGAGACCAGCTC+TGG 0.572833 4.1:+82948596 None:intergenic
TTGGCATTATTGGAATGGGA+AGG 0.585206 4.1:-82948871 MS.gene24947:CDS
TGATTATAAGTTGACAACTA+AGG 0.586743 4.1:-82950975 MS.gene24947:intron
GCATGTTGATGAACCAGAGC+TGG 0.593862 4.1:-82948609 MS.gene24947:CDS
CTATTCTAGAACTCCAAAGC+AGG 0.594716 4.1:-82948795 MS.gene24947:CDS
CGGCGCGTCAATTCGTGCGG+TGG 0.598767 4.1:-82951251 MS.gene24947:CDS
GCCTCATGTTGGAAGCGGCA+CGG 0.602877 4.1:-82948480 MS.gene24947:CDS
AAATCCTCCGAAGAAGCGTA+AGG 0.604514 4.1:+82951041 None:intergenic
ATTGTTTCCAGCTATAGCGT+TGG 0.607959 4.1:-82951169 MS.gene24947:CDS
AACAACCAGTATGTCGCAGT+TGG 0.611894 4.1:+82948730 None:intergenic
CGGCATGCAGATTAAACCAA+GGG 0.612509 4.1:+82948380 None:intergenic
AATAGTTCTTCGGGAACATG+AGG 0.622864 4.1:+82948527 None:intergenic
AAGGGTGTCCTAATTAACAT+TGG 0.623755 4.1:-82948641 MS.gene24947:CDS
ACCGTGCCGCTTCCAACATG+AGG 0.623796 4.1:+82948479 None:intergenic
TGATCCTTACGCTTCTTCGG+AGG 0.626638 4.1:-82951045 MS.gene24947:CDS
ATTAATGCAATTGGTCCGAA+GGG 0.631084 4.1:-82948659 MS.gene24947:CDS
GTTGTCTTATTGCCTCATGT+TGG 0.632321 4.1:-82948491 MS.gene24947:CDS
GTTCATCAACATGCGTACCT+CGG 0.634450 4.1:+82948618 None:intergenic
CAAGTTTCCTAGAAGAAGGT+CGG 0.637549 4.1:+82948436 None:intergenic
AATGAGGTTAGAATCGGCGC+CGG 0.642307 4.1:+82951213 None:intergenic
GATGAGTTTCCTCTGTAAGA+GGG 0.642427 4.1:+82948702 None:intergenic
GCTTCGGCAATGCTTCAATG+AGG 0.644180 4.1:+82951197 None:intergenic
TTACTTGAAGGTCGTTTGGG+TGG 0.644249 4.1:-82948578 MS.gene24947:CDS
AACTCATCACATCATCAACC+GGG 0.655089 4.1:-82948687 MS.gene24947:CDS
GCGGCATGCAGATTAAACCA+AGG 0.659732 4.1:+82948379 None:intergenic
ACACGGCGCGTCAATTCGTG+CGG 0.666825 4.1:-82951254 MS.gene24947:CDS
TAAACCAAGGGAGTTAACAG+TGG 0.668491 4.1:+82948392 None:intergenic
AGAAGTGGAAATTGGAAGCG+TGG 0.693078 4.1:-82950998 MS.gene24947:CDS
ATGGAATTACTTTAGCTACG+AGG 0.743135 4.1:+82951356 None:intergenic
TCATCACATCATCAACCGGG+AGG 0.750770 4.1:-82948684 MS.gene24947:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTAAATATTGAAATAT+AGG + chr4.1:82950651-82950670 None:intergenic 10.0%
!!! AAATAATTTATTTTTTCATC+CGG - chr4.1:82950843-82950862 MS.gene24947:intron 10.0%
!!! TGAAAAAATAAATTATTTTC+AGG + chr4.1:82950841-82950860 None:intergenic 10.0%
!! AGTGAAAAACATTTAAAAAT+TGG - chr4.1:82950690-82950709 MS.gene24947:intron 15.0%
!! TTATTAAAAGAACCTATTAA+TGG + chr4.1:82950571-82950590 None:intergenic 15.0%
!!! AAAATAAATTATTTTCAGGT+TGG + chr4.1:82950837-82950856 None:intergenic 15.0%
!!! ACATACATTAAATATGTTTT+AGG - chr4.1:82949662-82949681 MS.gene24947:intron 15.0%
!!! TTTATTGATAATGTATCTTA+TGG - chr4.1:82950308-82950327 MS.gene24947:intron 15.0%
!!! TTTTTCAATTAAGAATACAA+CGG + chr4.1:82949064-82949083 None:intergenic 15.0%
!! AAAAAATAAGTCAATCCAAA+CGG + chr4.1:82949374-82949393 None:intergenic 20.0%
!! AATATCATGTTATTCATTGT+AGG - chr4.1:82950082-82950101 MS.gene24947:intron 20.0%
!! AATCATAATGTTAACTGTTT+CGG - chr4.1:82949823-82949842 MS.gene24947:intron 20.0%
!! ATAAACTATAAGCTCAAAAA+TGG + chr4.1:82948917-82948936 None:intergenic 20.0%
!! ATATCATGTTATTCATTGTA+GGG - chr4.1:82950083-82950102 MS.gene24947:intron 20.0%
!!! TACATTAAATATGTTTTAGG+TGG - chr4.1:82949665-82949684 MS.gene24947:intron 20.0%
!!! TTAAAAGTTGAGATTTTTGT+GGG + chr4.1:82948489-82948508 None:intergenic 20.0%
! AAGCTAAAAAATTAGCCAAA+CGG - chr4.1:82949558-82949577 MS.gene24947:intron 25.0%
! AGTGAAAAATTGTGAATAGA+TGG + chr4.1:82949341-82949360 None:intergenic 25.0%
! ATAATGTATCTTATGGTTCA+TGG - chr4.1:82950315-82950334 MS.gene24947:intron 25.0%
! GCTAATTGAATTATGTTGTT+TGG + chr4.1:82949160-82949179 None:intergenic 25.0%
! GTTGATACTGTTAAAAATTG+TGG - chr4.1:82948862-82948881 MS.gene24947:CDS 25.0%
! TATTATTCATAAGCATGTCA+AGG + chr4.1:82949501-82949520 None:intergenic 25.0%
!! ATGTTGTTTGGTATATTTAG+CGG + chr4.1:82949148-82949167 None:intergenic 25.0%
!! GTTAAAAGTTGAGATTTTTG+TGG + chr4.1:82948490-82948509 None:intergenic 25.0%
!! TGATTATAAGTTGACAACTA+AGG - chr4.1:82948792-82948811 MS.gene24947:CDS 25.0%
!!! ATTATTTTCAGGTTGGAAAA+TGG + chr4.1:82950830-82950849 None:intergenic 25.0%
!!! TGGAACATAGTTTTAAATTG+TGG - chr4.1:82949685-82949704 MS.gene24947:intron 25.0%
AGCTAAAAAATTAGCCAAAC+GGG - chr4.1:82949559-82949578 MS.gene24947:intron 30.0%
CTACAATCTTTATCGCATTT+GGG - chr4.1:82948459-82948478 MS.gene24947:CDS 30.0%
CTTGACTGAGTTTGATAAAA+AGG - chr4.1:82950046-82950065 MS.gene24947:intron 30.0%
GATTGATCTTAACAAGTGTA+AGG - chr4.1:82948630-82948649 MS.gene24947:CDS 30.0%
TACATGAGAATACACATAAC+CGG + chr4.1:82950791-82950810 None:intergenic 30.0%
TAGAGACACAATAAGACTTA+GGG + chr4.1:82949585-82949604 None:intergenic 30.0%
TGTCTTATAAGCTCATTTGA+TGG - chr4.1:82948949-82948968 MS.gene24947:intron 30.0%
TTAACAAGTGTAAGGAGAAA+GGG - chr4.1:82948638-82948657 MS.gene24947:CDS 30.0%
TTGAGTTCTTGATCTAAGTA+TGG + chr4.1:82948433-82948452 None:intergenic 30.0%
TTGGTATATTTAGCTGATAG+CGG + chr4.1:82949212-82949231 None:intergenic 30.0%
TTTGATGGAAAAGACATGTT+TGG - chr4.1:82948964-82948983 MS.gene24947:intron 30.0%
! AAATACAGCTTCATTTTGCA+GGG + chr4.1:82950139-82950158 None:intergenic 30.0%
! AAATTGTGGTCTAGTTCAAT+AGG - chr4.1:82948876-82948895 MS.gene24947:CDS 30.0%
! ACATGCATGGAAATTGTTTT+AGG - chr4.1:82949714-82949733 MS.gene24947:intron 30.0%
! AGTTAGCTTATAGATGATAG+CGG + chr4.1:82949283-82949302 None:intergenic 30.0%
! CTTGGATAGTACTTGTATTT+TGG + chr4.1:82951000-82951019 None:intergenic 30.0%
!! TAAGTCTTATTGTGTCTCTA+GGG - chr4.1:82949585-82949604 MS.gene24947:intron 30.0%
!! TCTCAACTTTTAACTCAACA+CGG - chr4.1:82948496-82948515 MS.gene24947:CDS 30.0%
!!! AGCAGCATAGTTTTAAATTG+TGG - chr4.1:82949738-82949757 MS.gene24947:intron 30.0%
AAACTCATCACATCATCAAC+CGG - chr4.1:82951079-82951098 MS.gene24947:CDS 35.0%
AAAGGAGTGAACAAAAGAGT+AGG + chr4.1:82950437-82950456 None:intergenic 35.0%
AACCATTGGCATTATTGGAA+TGG - chr4.1:82950891-82950910 MS.gene24947:intron 35.0%
AACTACGTGAGATTCAGAAA+TGG + chr4.1:82950163-82950182 None:intergenic 35.0%
ACATCATCAGTCAAAACATC+AGG + chr4.1:82948682-82948701 None:intergenic 35.0%
ACCATTGGCATTATTGGAAT+GGG - chr4.1:82950892-82950911 MS.gene24947:intron 35.0%
ATGATGAAGAGTGGAGATAA+AGG + chr4.1:82949903-82949922 None:intergenic 35.0%
ATGCAGTAGTGATCCTTAAT+GGG + chr4.1:82950521-82950540 None:intergenic 35.0%
ATGGAATTACTTTAGCTACG+AGG + chr4.1:82948414-82948433 None:intergenic 35.0%
ATGTTAATTAGGACACCCTT+CGG + chr4.1:82951126-82951145 None:intergenic 35.0%
ATGTTCCCGAAGAACTATTT+GGG - chr4.1:82951244-82951263 MS.gene24947:CDS 35.0%
ATTAAAACCTTCAGCTCTCT+TGG + chr4.1:82950938-82950957 None:intergenic 35.0%
ATTAATGCAATTGGTCCGAA+GGG - chr4.1:82951108-82951127 MS.gene24947:CDS 35.0%
ATTATTGGAATGGGAAGGAT+TGG - chr4.1:82950901-82950920 MS.gene24947:intron 35.0%
CTAGAGACACAATAAGACTT+AGG + chr4.1:82949586-82949605 None:intergenic 35.0%
CTTAACAAGTGTAAGGAGAA+AGG - chr4.1:82948637-82948656 MS.gene24947:CDS 35.0%
GAGTATAGTAGTGCTCTATT+AGG - chr4.1:82949874-82949893 MS.gene24947:intron 35.0%
GATCTATCATCATGTTGCAA+GGG - chr4.1:82950720-82950739 MS.gene24947:intron 35.0%
GATTTGTCAGAAGTGGAAAT+TGG - chr4.1:82948761-82948780 MS.gene24947:CDS 35.0%
GCTACAATCTTTATCGCATT+TGG - chr4.1:82948458-82948477 MS.gene24947:CDS 35.0%
GTGAATCTCATTGAATTGCA+CGG - chr4.1:82950190-82950209 MS.gene24947:intron 35.0%
TATGCAGTAGTGATCCTTAA+TGG + chr4.1:82950522-82950541 None:intergenic 35.0%
TGAACAAAAGAGTAGGTCTT+GGG + chr4.1:82950430-82950449 None:intergenic 35.0%
TGATCTATCATCATGTTGCA+AGG - chr4.1:82950719-82950738 MS.gene24947:intron 35.0%
TGATGAAGAGTGGAGATAAA+GGG + chr4.1:82949902-82949921 None:intergenic 35.0%
TGCTTCAATGAGGTTAGAAT+CGG + chr4.1:82948563-82948582 None:intergenic 35.0%
TTCTAGCCCAAATAGTTCTT+CGG + chr4.1:82951253-82951272 None:intergenic 35.0%
TTCTCTGCAATATCAAGACT+TGG - chr4.1:82949852-82949871 MS.gene24947:intron 35.0%
TTGTTGGAAGATTGCCAAAA+AGG + chr4.1:82950455-82950474 None:intergenic 35.0%
TTTATCTCCACTCTTCATCA+TGG - chr4.1:82949902-82949921 MS.gene24947:intron 35.0%
TTTCTGAATCTCACGTAGTT+AGG - chr4.1:82950163-82950182 MS.gene24947:intron 35.0%
! AGCTAGCTTATAGATGATAG+CGG + chr4.1:82949316-82949335 None:intergenic 35.0%
! ATGAGTTGACGTTTCTAGAT+AGG - chr4.1:82949950-82949969 MS.gene24947:intron 35.0%
! CAAATACAGCTTCATTTTGC+AGG + chr4.1:82950140-82950159 None:intergenic 35.0%
! CACAGCTGAAACATAGTTTT+AGG - chr4.1:82949634-82949653 MS.gene24947:intron 35.0%
! CTCTTTTGTTCACTCCTTTT+TGG - chr4.1:82950438-82950457 MS.gene24947:intron 35.0%
! GAATCTCGATTTGATAACCT+CGG - chr4.1:82950390-82950409 MS.gene24947:intron 35.0%
! TATTTTCGTTGCAGTTCTCT+GGG - chr4.1:82950866-82950885 MS.gene24947:intron 35.0%
! TCTAGTTCAATAGGTCTGTT+TGG - chr4.1:82948885-82948904 MS.gene24947:CDS 35.0%
!! AAGGGTGTCCTAATTAACAT+TGG - chr4.1:82951126-82951145 MS.gene24947:CDS 35.0%
!! CTAAGTCTTATTGTGTCTCT+AGG - chr4.1:82949584-82949603 MS.gene24947:intron 35.0%
!! CTTTGGAGTTCTAGAATAGT+AGG + chr4.1:82950971-82950990 None:intergenic 35.0%
!!! ATTTTCAGGTTGGAAAATGG+AGG + chr4.1:82950827-82950846 None:intergenic 35.0%
!!! TTGTATTTTGGTTCCTGCTT+TGG + chr4.1:82950988-82951007 None:intergenic 35.0%
!!! TTTTCAGGTTGGAAAATGGA+GGG + chr4.1:82950826-82950845 None:intergenic 35.0%
AACTCATCACATCATCAACC+GGG - chr4.1:82951080-82951099 MS.gene24947:CDS 40.0%
AATAGTTCTTCGGGAACATG+AGG + chr4.1:82951243-82951262 None:intergenic 40.0%
ACAAACCAATTTGAGGGACT+TGG - chr4.1:82950238-82950257 MS.gene24947:intron 40.0%
AGAAACCAAGTCCCTCAAAT+TGG + chr4.1:82950246-82950265 None:intergenic 40.0%
ATTGTTTCCAGCTATAGCGT+TGG - chr4.1:82948598-82948617 MS.gene24947:CDS 40.0%
CAAGTTTCCTAGAAGAAGGT+CGG + chr4.1:82951334-82951353 None:intergenic 40.0%
CAATTGCATTAATGACCTCC+CGG + chr4.1:82951101-82951120 None:intergenic 40.0%
CATGTTCCCGAAGAACTATT+TGG - chr4.1:82951243-82951262 MS.gene24947:CDS 40.0%
CATTAATGCAATTGGTCCGA+AGG - chr4.1:82951107-82951126 MS.gene24947:CDS 40.0%
CTGGAAACAATCTCAAGCTT+CGG + chr4.1:82948589-82948608 None:intergenic 40.0%
GAGAACTGCAACGAAAATAC+CGG + chr4.1:82950865-82950884 None:intergenic 40.0%
GATGAGTTTCCTCTGTAAGA+GGG + chr4.1:82951068-82951087 None:intergenic 40.0%
GATGCTAACTCAACAAGACT+TGG + chr4.1:82951018-82951037 None:intergenic 40.0%
GCATCCACAAACCAATTTGA+GGG - chr4.1:82950232-82950251 MS.gene24947:intron 40.0%
GCATTACTTGAAGGTCGTTT+GGG - chr4.1:82951186-82951205 MS.gene24947:CDS 40.0%
GGGAAAACCATTGGCATTAT+TGG - chr4.1:82950886-82950905 MS.gene24947:intron 40.0%
GTCACACTGCTCATTAAAAC+CGG - chr4.1:82950769-82950788 MS.gene24947:intron 40.0%
GTGAACAAAAGAGTAGGTCT+TGG + chr4.1:82950431-82950450 None:intergenic 40.0%
GTGATCCAATTCACCCATTA+AGG - chr4.1:82950505-82950524 MS.gene24947:intron 40.0%
GTTTGATCCTTACGCTTCTT+CGG - chr4.1:82948719-82948738 MS.gene24947:CDS 40.0%
TAAACCAAGGGAGTTAACAG+TGG + chr4.1:82951378-82951397 None:intergenic 40.0%
TACCTCGGCCAATGTTAATT+AGG + chr4.1:82951137-82951156 None:intergenic 40.0%
TCCCATTCCAATAATGCCAA+TGG + chr4.1:82950896-82950915 None:intergenic 40.0%
TCGATAACCATGATGAAGAG+TGG + chr4.1:82949912-82949931 None:intergenic 40.0%
TCTAGCCCAAATAGTTCTTC+GGG + chr4.1:82951252-82951271 None:intergenic 40.0%
TGATGAGTTTCCTCTGTAAG+AGG + chr4.1:82951069-82951088 None:intergenic 40.0%
TGCATCCACAAACCAATTTG+AGG - chr4.1:82950231-82950250 MS.gene24947:intron 40.0%
TGCATTACTTGAAGGTCGTT+TGG - chr4.1:82951185-82951204 MS.gene24947:CDS 40.0%
TGCTGAAACACGAGTTTGTA+TGG + chr4.1:82949987-82950006 None:intergenic 40.0%
TTATTGCCTCATGTTGGAAG+CGG - chr4.1:82951282-82951301 MS.gene24947:CDS 40.0%
TTGGCATTATTGGAATGGGA+AGG - chr4.1:82950896-82950915 MS.gene24947:intron 40.0%
! AGATGTTTCTACTGCCTACT+GGG + chr4.1:82950480-82950499 None:intergenic 40.0%
! GACTGATGATGTTGCTGATT+TGG - chr4.1:82948690-82948709 MS.gene24947:CDS 40.0%
! GTATTTTCGTTGCAGTTCTC+TGG - chr4.1:82950865-82950884 MS.gene24947:intron 40.0%
! GTGATCCTTAATGGGTGAAT+TGG + chr4.1:82950513-82950532 None:intergenic 40.0%
! GTTGTCTTATTGCCTCATGT+TGG - chr4.1:82951276-82951295 MS.gene24947:CDS 40.0%
!! AAGTCCCTCAAATTGGTTTG+TGG + chr4.1:82950239-82950258 None:intergenic 40.0%
!! CTATTCTAGAACTCCAAAGC+AGG - chr4.1:82950972-82950991 MS.gene24947:intron 40.0%
!! GATGTTGCTGATTTGGCTAT+TGG - chr4.1:82948697-82948716 MS.gene24947:CDS 40.0%
!! TCACTAAACAAAGTGCCGTT+TGG - chr4.1:82949356-82949375 MS.gene24947:intron 40.0%
!! TGTGATCGATTTGTCAGAAG+TGG - chr4.1:82948754-82948773 MS.gene24947:CDS 40.0%
!! TTTCAGGTTGGAAAATGGAG+GGG + chr4.1:82950825-82950844 None:intergenic 40.0%
AAAGCCACTGTTAACTCCCT+TGG - chr4.1:82951371-82951390 MS.gene24947:CDS 45.0%
AACAACCAGTATGTCGCAGT+TGG + chr4.1:82951040-82951059 None:intergenic 45.0%
AACTTGGAGGCTCATTTCCT+TGG - chr4.1:82951348-82951367 MS.gene24947:CDS 45.0%
AATAAGACTTAGGGCCCGTT+TGG + chr4.1:82949576-82949595 None:intergenic 45.0%
ACAAAAGAGTAGGTCTTGGG+TGG + chr4.1:82950427-82950446 None:intergenic 45.0%
ACGCTGCTCTTGCCATTAAT+AGG - chr4.1:82950556-82950575 MS.gene24947:intron 45.0%
AGAAGTGGAAATTGGAAGCG+TGG - chr4.1:82948769-82948788 MS.gene24947:CDS 45.0%
ATCAACACCAACGCTATAGC+TGG + chr4.1:82948608-82948627 None:intergenic 45.0%
ATCTTCCAACAATCCCCAGT+AGG - chr4.1:82950463-82950482 MS.gene24947:intron 45.0%
ATTGTGGTTCGCAACATGCA+TGG - chr4.1:82949701-82949720 MS.gene24947:intron 45.0%
CACGGTATGAGTTCAGTCAT+GGG - chr4.1:82950208-82950227 MS.gene24947:intron 45.0%
CCTCCAAGTTTCCTAGAAGA+AGG + chr4.1:82951338-82951357 None:intergenic 45.0%
CGGGAGGTCATTAATGCAAT+TGG - chr4.1:82951099-82951118 MS.gene24947:CDS 45.0%
CTGGTCTCTGCATTACTTGA+AGG - chr4.1:82951177-82951196 MS.gene24947:CDS 45.0%
GAGTTAACAGTGGCTTTCCA+AGG + chr4.1:82951368-82951387 None:intergenic 45.0%
GTCCTAATTAACATTGGCCG+AGG - chr4.1:82951132-82951151 MS.gene24947:CDS 45.0%
GTTCATCAACATGCGTACCT+CGG + chr4.1:82951152-82951171 None:intergenic 45.0%
TACGCTTCTTCGGAGGATTT+CGG - chr4.1:82948729-82948748 MS.gene24947:CDS 45.0%
TTACTTGAAGGTCGTTTGGG+TGG - chr4.1:82951189-82951208 MS.gene24947:CDS 45.0%
! AAATCCTCCGAAGAAGCGTA+AGG + chr4.1:82948729-82948748 None:intergenic 45.0%
! CAGATGTTTCTACTGCCTAC+TGG + chr4.1:82950481-82950500 None:intergenic 45.0%
! CAGTTCTCTGGGAAAACCAT+TGG - chr4.1:82950877-82950896 MS.gene24947:intron 45.0%
! CCTTCTTCTAGGAAACTTGG+AGG - chr4.1:82951335-82951354 MS.gene24947:CDS 45.0%
! CGACCTTCTTCTAGGAAACT+TGG - chr4.1:82951332-82951351 MS.gene24947:CDS 45.0%
! CGATTTGATAACCTCGGTTC+CGG - chr4.1:82950396-82950415 MS.gene24947:intron 45.0%
! GATGTTTCTACTGCCTACTG+GGG + chr4.1:82950479-82950498 None:intergenic 45.0%
! GTCTTATTGTGTCTCTAGGG+TGG - chr4.1:82949588-82949607 MS.gene24947:intron 45.0%
!! TTCAGGTTGGAAAATGGAGG+GGG + chr4.1:82950824-82950843 None:intergenic 45.0%
!! ATAATAAGATTAAATTAATT+TGG - chr4.1:82950341-82950360 MS.gene24947:intron 5.0%
!!! TTTAATAATACTTTTATATT+TGG - chr4.1:82950583-82950602 MS.gene24947:intron 5.0%
AATGAGGTTAGAATCGGCGC+CGG + chr4.1:82948557-82948576 None:intergenic 50.0%
AGAGTAGGTCTTGGGTGGTA+AGG + chr4.1:82950422-82950441 None:intergenic 50.0%
AGCATCCAACTGCGACATAC+TGG - chr4.1:82951032-82951051 MS.gene24947:CDS 50.0%
AGTAATGCAGAGACCAGCTC+TGG + chr4.1:82951174-82951193 None:intergenic 50.0%
AGTTTCCTCTGTAAGAGGGC+AGG + chr4.1:82951064-82951083 None:intergenic 50.0%
GCACGGTATGAGTTCAGTCA+TGG - chr4.1:82950207-82950226 MS.gene24947:intron 50.0%
GCTTCGGCAATGCTTCAATG+AGG + chr4.1:82948573-82948592 None:intergenic 50.0%
TACTGCCTACTGGGGATTGT+TGG + chr4.1:82950471-82950490 None:intergenic 50.0%
TCATCACATCATCAACCGGG+AGG - chr4.1:82951083-82951102 MS.gene24947:CDS 50.0%
TGATCCTTACGCTTCTTCGG+AGG - chr4.1:82948722-82948741 MS.gene24947:CDS 50.0%
! GCATGTTGATGAACCAGAGC+TGG - chr4.1:82951158-82951177 MS.gene24947:CDS 50.0%
!! TCAGGTTGGAAAATGGAGGG+GGG + chr4.1:82950823-82950842 None:intergenic 50.0%
!! TTTGCAGGGAAGCACTGAGA+GGG + chr4.1:82950125-82950144 None:intergenic 50.0%
!!! TTTTGCAGGGAAGCACTGAG+AGG + chr4.1:82950126-82950145 None:intergenic 50.0%
AATGGCAAGAGCAGCGTCAC+AGG + chr4.1:82950553-82950572 None:intergenic 55.0%
GCAGTTGCCAAGAGAGCTGA+AGG - chr4.1:82950928-82950947 MS.gene24947:intron 55.0%
GGTAGAAACTCGAGCTGCCA+TGG - chr4.1:82951308-82951327 MS.gene24947:CDS 55.0%
GTTGGAAAATGGAGGGGGGA+GGG + chr4.1:82950819-82950838 None:intergenic 55.0%
TAGGTCTTGGGTGGTAAGGC+CGG + chr4.1:82950418-82950437 None:intergenic 55.0%
TCCTAGAAGAAGGTCGGCCA+TGG + chr4.1:82951328-82951347 None:intergenic 55.0%
TGTTGCCTGCCCTCTTACAG+AGG - chr4.1:82951056-82951075 MS.gene24947:CDS 55.0%
TTGGAAAATGGAGGGGGGAG+GGG + chr4.1:82950818-82950837 None:intergenic 55.0%
! GTGGTTTGCAGCTGCAGTCA+TGG - chr4.1:82949757-82949776 MS.gene24947:intron 55.0%
ACACGGCGCGTCAATTCGTG+CGG - chr4.1:82948513-82948532 MS.gene24947:CDS 60.0%
GAAGGTCGTTTGGGTGGTGC+TGG - chr4.1:82951195-82951214 MS.gene24947:CDS 60.0%
GCCATGGCCGACCTTCTTCT+AGG - chr4.1:82951324-82951343 MS.gene24947:CDS 60.0%
GCCTCATGTTGGAAGCGGCA+CGG - chr4.1:82951287-82951306 MS.gene24947:CDS 60.0%
GCGTCAATTCGTGCGGTGGT+CGG - chr4.1:82948520-82948539 MS.gene24947:CDS 60.0%
GGTTGGAAAATGGAGGGGGG+AGG + chr4.1:82950820-82950839 None:intergenic 60.0%
GTGGTCGGAAATGCAAGCGC+CGG - chr4.1:82948535-82948554 MS.gene24947:CDS 60.0%
TGGAAAATGGAGGGGGGAGG+GGG + chr4.1:82950817-82950836 None:intergenic 60.0%
!! ACCGTGCCGCTTCCAACATG+AGG + chr4.1:82951291-82951310 None:intergenic 60.0%
GGAAAATGGAGGGGGGAGGG+GGG + chr4.1:82950816-82950835 None:intergenic 65.0%
CGGCGCGTCAATTCGTGCGG+TGG - chr4.1:82948516-82948535 MS.gene24947:CDS 70.0%
GGGTGGTAAGGCCGGAACCG+AGG + chr4.1:82950410-82950429 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 82948391 82951398 82948391 ID=MS.gene24947
chr4.1 mRNA 82948391 82951398 82948391 ID=MS.gene24947.t1;Parent=MS.gene24947
chr4.1 exon 82950976 82951398 82950976 ID=MS.gene24947.t1.exon1;Parent=MS.gene24947.t1
chr4.1 CDS 82950976 82951398 82950976 ID=cds.MS.gene24947.t1;Parent=MS.gene24947.t1
chr4.1 exon 82948391 82948909 82948391 ID=MS.gene24947.t1.exon2;Parent=MS.gene24947.t1
chr4.1 CDS 82948391 82948909 82948391 ID=cds.MS.gene24947.t1;Parent=MS.gene24947.t1
Gene Sequence

>MS.gene24947

ATGGGATCTATAGATCTTCTCCTCGTAGCTAAAGTAATTCCATACTTAGATCAAGAACTCAATAAACGCTACAATCTTTATCGCATTTGGGATTACCCACAAAAATCTCAACTTTTAACTCAACACGGCGCGTCAATTCGTGCGGTGGTCGGAAATGCAAGCGCCGGCGCCGATTCTAACCTCATTGAAGCATTGCCGAAGCTTGAGATTGTTTCCAGCTATAGCGTTGGTGTTGATATGATTGATCTTAACAAGTGTAAGGAGAAAGGGATTCGTGTGACGAATACACCTGATGTTTTGACTGATGATGTTGCTGATTTGGCTATTGGTTTGATCCTTACGCTTCTTCGGAGGATTTCGGAATGTGATCGATTTGTCAGAAGTGGAAATTGGAAGCGTGGTGATTATAAGTTGACAACTAAGGTAAATCGCTAATGATTAAGTTTCTAAATTGATGTTGCTTTTTATGATGTTGATACTGTTAAAAATTGTGGTCTAGTTCAATAGGTCTGTTTGGCATGTTCCATTTTTGAGCTTATAGTTTATAGTTTATTTATATGTCTTATAAGCTCATTTGATGGAAAAGACATGTTTGGTAACAGTCACTTTCTCGCGAGCTTAGAGCTTATTTTTACTAACTTATAGCTTATCATTATTTATTCTAATTTTACCGTTGTATTCTTAATTGAAAAAAAATTAAATTTTAATTAAATATATTATTTTTATGTCATTTCATATTTATAAGCTAGTTCAACCGCTAAATATACCAAACAACATAATTCAATTAGCTATCAGCTATAAGCTAACTTATCGACTATCCGCTATCAGCTAAATATACCAAACAACATAATTCAATTAGCTATCAGCTATAAGCTAACTTATCGACTATCCGCTATCATCTATAAGCTAACTTATCAACTGTCCGCTATCATCTATAAGCTAGCTTACCATCTATTCACAATTTTTCACTAAACAAAGTGCCGTTTGGATTGACTTATTTTTTGAGCTTATGAAAAATAGCTTATACAAATAAATAAGCTTTTATATTAATTCATAAGTTCTCACTAATGAAAACTGTATCTTCATAAGCTATTTTTTCATAAACTACCTTGACATGCTTATGAATAATACACAAAAGCTTATTTATTTGCATAAGTTATTTTGAATAAGCTAAAAAATTAGCCAAACGGGCCCTAAGTCTTATTGTGTCTCTAGGGTGGTATCACATTTCACAATTCTTAATCACAGCTGAAACATAGTTTTAGGTCAGAACATACATTAAATATGTTTTAGGTGGAACATAGTTTTAAATTGTGGTTCGCAACATGCATGGAAATTGTTTTAGGTAGCAGCATAGTTTTAAATTGTGGTTTGCAGCTGCAGTCATGGTATAAAAGATTTAGAGATGTCTGCAAGACTGCAACAGCATCACAATCATAATGTTAACTGTTTCGGATGCATTTCTCTGCAATATCAAGACTTGGAGTATAGTAGTGCTCTATTAGGATCCCTTTATCTCCACTCTTCATCATGGTTATCGAACTCGCAAGTTGACTTGTATGAGTTGACGTTTCTAGATAGGAAAATTGAATTCCATACAAACTCGTGTTTCAGCAAACTCAGTTGAACTAATACAAACTTGTTCATATATCATACTTGACTGAGTTTGATAAAAAGGCAACATCATAATCAATATCATGTTATTCATTGTAGGGTTTCTACATTTTTGTTCCCTCTCAGTGCTTCCCTGCAAAATGAAGCTGTATTTGCCATTTCTGAATCTCACGTAGTTAGGAGTTGTGAATCTCATTGAATTGCACGGTATGAGTTCAGTCATGGGTGCATCCACAAACCAATTTGAGGGACTTGGTTTCTAAATGTTGCTTATGTCATTTGTTTTTATTTAACAATGTCATTTTTATTGATAATGTATCTTATGGTTCATGGTTCATAATAAGATTAAATTAATTTGGAAAATAAGTTTTCTTATTCACAATTTGAATCTCGATTTGATAACCTCGGTTCCGGCCTTACCACCCAAGACCTACTCTTTTGTTCACTCCTTTTTGGCAATCTTCCAACAATCCCCAGTAGGCAGTAGAAACATCTGTCTAGTGATCCAATTCACCCATTAAGGATCACTACTGCATAAAAGTGAACCTGTGACGCTGCTCTTGCCATTAATAGGTTCTTTTAATAATACTTTTATATTTGGTCAACATGTCGAGTCTGCAAAAGCTTTATATTTGACAAACTACCTATATTTCAATATTTACAAATTTGTAATCTTTCATAAAACAGTGAAAAACATTTAAAAATTGGACGCAGTGATCTATCATCATGTTGCAAGGGTTGCAGAGCTTCAATCATATAATTGTGTCACACTGCTCATTAAAACCGGTTATGTGTATTCTCATGTAGTCCCCCCTCCCCCCTCCATTTTCCAACCTGAAAATAATTTATTTTTTCATCCGGTATTTTCGTTGCAGTTCTCTGGGAAAACCATTGGCATTATTGGAATGGGAAGGATTGGCACAGCAGTTGCCAAGAGAGCTGAAGGTTTTAATTGTTCAATATCCTACTATTCTAGAACTCCAAAGCAGGAACCAAAATACAAGTACTATCCAAGTCTTGTTGAGTTAGCATCCAACTGCGACATACTGGTTGTTGCCTGCCCTCTTACAGAGGAAACTCATCACATCATCAACCGGGAGGTCATTAATGCAATTGGTCCGAAGGGTGTCCTAATTAACATTGGCCGAGGTACGCATGTTGATGAACCAGAGCTGGTCTCTGCATTACTTGAAGGTCGTTTGGGTGGTGCTGGACTTGATGTGTATGAAAACGAGCCTCATGTTCCCGAAGAACTATTTGGGCTAGAAAATGTTGTCTTATTGCCTCATGTTGGAAGCGGCACGGTAGAAACTCGAGCTGCCATGGCCGACCTTCTTCTAGGAAACTTGGAGGCTCATTTCCTTGGAAAGCCACTGTTAACTCCCTTGGTTTAA

Protein sequence

>MS.gene24947.t1

MGSIDLLLVAKVIPYLDQELNKRYNLYRIWDYPQKSQLLTQHGASIRAVVGNASAGADSNLIEALPKLEIVSSYSVGVDMIDLNKCKEKGIRVTNTPDVLTDDVADLAIGLILTLLRRISECDRFVRSGNWKRGDYKLTTKFSGKTIGIIGMGRIGTAVAKRAEGFNCSISYYSRTPKQEPKYKYYPSLVELASNCDILVVACPLTEETHHIINREVINAIGPKGVLINIGRGTHVDEPELVSALLEGRLGGAGLDVYENEPHVPEELFGLENVVLLPHVGSGTVETRAAMADLLLGNLEAHFLGKPLLTPLV