Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24946.t1 | AES86693.1 | 98.7 | 314 | 4 | 0 | 1 | 314 | 1 | 314 | 5.80E-176 | 626.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24946.t1 | Q9CA90 | 76.1 | 314 | 74 | 1 | 1 | 314 | 1 | 313 | 1.6e-134 | 480.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24946.t1 | G7JJF7 | 98.7 | 314 | 4 | 0 | 1 | 314 | 1 | 314 | 4.2e-176 | 626.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24946 | MS.gene87846 | PPI |
| MS.gene24946 | MS.gene23623 | PPI |
| MS.gene23633 | MS.gene24946 | PPI |
| MS.gene24946 | MS.gene019405 | PPI |
| MS.gene24946 | MS.gene87842 | PPI |
| MS.gene24946 | MS.gene029300 | PPI |
| MS.gene24946 | MS.gene74946 | PPI |
| MS.gene24946 | MS.gene37515 | PPI |
| MS.gene24946 | MS.gene76198 | PPI |
| MS.gene24946 | MS.gene37513 | PPI |
| MS.gene24946 | MS.gene019402 | PPI |
| MS.gene24946 | MS.gene23624 | PPI |
| MS.gene24946 | MS.gene019406 | PPI |
| MS.gene24946 | MS.gene019404 | PPI |
| MS.gene24946 | MS.gene37512 | PPI |
| MS.gene24946 | MS.gene37508 | PPI |
| MS.gene24946 | MS.gene87848 | PPI |
| MS.gene24946 | MS.gene065032 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24946.t1 | MTR_4g013100 | 98.726 | 314 | 4 | 0 | 1 | 314 | 1 | 314 | 0.0 | 634 |
| MS.gene24946.t1 | MTR_4g013090 | 89.172 | 314 | 33 | 1 | 1 | 314 | 1 | 313 | 0.0 | 566 |
| MS.gene24946.t1 | MTR_4g012960 | 86.306 | 314 | 39 | 2 | 1 | 314 | 1 | 310 | 0.0 | 551 |
| MS.gene24946.t1 | MTR_4g013135 | 88.535 | 314 | 35 | 1 | 1 | 314 | 1 | 313 | 0.0 | 531 |
| MS.gene24946.t1 | MTR_2g101840 | 62.857 | 315 | 115 | 2 | 1 | 314 | 1 | 314 | 4.08e-135 | 386 |
| MS.gene24946.t1 | MTR_8g033390 | 45.745 | 282 | 148 | 2 | 38 | 314 | 42 | 323 | 4.03e-88 | 267 |
| MS.gene24946.t1 | MTR_8g033410 | 40.391 | 307 | 172 | 3 | 16 | 314 | 23 | 326 | 3.70e-82 | 251 |
| MS.gene24946.t1 | MTR_8g033400 | 40.000 | 305 | 173 | 3 | 17 | 314 | 32 | 333 | 9.60e-82 | 251 |
| MS.gene24946.t1 | MTR_7g075830 | 42.481 | 266 | 138 | 4 | 62 | 313 | 50 | 314 | 1.24e-65 | 209 |
| MS.gene24946.t1 | MTR_4g013040 | 78.481 | 79 | 17 | 0 | 66 | 144 | 4 | 82 | 1.75e-36 | 130 |
| MS.gene24946.t1 | MTR_1g112510 | 32.990 | 291 | 169 | 6 | 44 | 309 | 60 | 349 | 1.69e-33 | 127 |
| MS.gene24946.t1 | MTR_1g107480 | 28.627 | 255 | 173 | 4 | 68 | 314 | 118 | 371 | 1.71e-29 | 118 |
| MS.gene24946.t1 | MTR_4g005880 | 29.412 | 255 | 171 | 4 | 68 | 314 | 151 | 404 | 3.51e-29 | 117 |
| MS.gene24946.t1 | MTR_3g005970 | 28.295 | 258 | 162 | 6 | 59 | 296 | 108 | 362 | 7.75e-25 | 103 |
| MS.gene24946.t1 | MTR_6g007170 | 25.993 | 277 | 196 | 4 | 40 | 307 | 91 | 367 | 4.07e-21 | 92.8 |
| MS.gene24946.t1 | MTR_7g078990 | 23.932 | 234 | 167 | 3 | 82 | 305 | 88 | 320 | 1.51e-15 | 77.4 |
| MS.gene24946.t1 | MTR_6g007175 | 23.162 | 272 | 191 | 4 | 40 | 307 | 60 | 317 | 7.57e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24946.t1 | AT1G79870 | 76.115 | 314 | 74 | 1 | 1 | 314 | 1 | 313 | 1.76e-168 | 470 |
| MS.gene24946.t1 | AT1G79870 | 71.338 | 314 | 70 | 2 | 1 | 314 | 1 | 294 | 7.66e-152 | 427 |
| MS.gene24946.t1 | AT1G12550 | 53.430 | 277 | 128 | 1 | 38 | 313 | 44 | 320 | 7.77e-103 | 304 |
| MS.gene24946.t1 | AT2G45630 | 42.905 | 296 | 166 | 3 | 22 | 314 | 43 | 338 | 7.28e-85 | 259 |
| MS.gene24946.t1 | AT1G68010 | 32.069 | 290 | 173 | 4 | 44 | 309 | 60 | 349 | 1.81e-32 | 124 |
| MS.gene24946.t1 | AT1G68010 | 32.384 | 281 | 166 | 4 | 44 | 300 | 60 | 340 | 7.59e-32 | 122 |
| MS.gene24946.t1 | AT4G34200 | 30.196 | 255 | 169 | 4 | 68 | 314 | 124 | 377 | 7.75e-32 | 125 |
| MS.gene24946.t1 | AT1G17745 | 30.116 | 259 | 168 | 4 | 68 | 314 | 145 | 402 | 1.49e-31 | 124 |
| MS.gene24946.t1 | AT1G68010 | 31.959 | 291 | 173 | 5 | 44 | 309 | 60 | 350 | 8.92e-31 | 119 |
| MS.gene24946.t1 | AT3G19480 | 30.859 | 256 | 166 | 7 | 68 | 314 | 109 | 362 | 1.58e-29 | 118 |
| MS.gene24946.t1 | AT1G72190 | 30.435 | 253 | 156 | 5 | 59 | 296 | 106 | 353 | 8.81e-26 | 105 |
| MS.gene24946.t1 | AT1G17745 | 27.622 | 286 | 167 | 6 | 68 | 314 | 145 | 429 | 1.96e-25 | 107 |
| MS.gene24946.t1 | AT5G14780 | 27.273 | 242 | 169 | 3 | 77 | 311 | 114 | 355 | 2.46e-23 | 99.0 |
| MS.gene24946.t1 | AT5G14780 | 27.273 | 242 | 169 | 3 | 77 | 311 | 102 | 343 | 2.66e-23 | 99.0 |
| MS.gene24946.t1 | AT5G14780 | 27.273 | 242 | 169 | 3 | 77 | 311 | 128 | 369 | 3.61e-23 | 99.0 |
| MS.gene24946.t1 | AT2G45630 | 34.074 | 135 | 87 | 2 | 22 | 154 | 43 | 177 | 9.44e-21 | 88.2 |
| MS.gene24946.t1 | AT5G28310 | 33.333 | 180 | 68 | 5 | 136 | 314 | 105 | 233 | 8.05e-19 | 84.3 |
| MS.gene24946.t1 | AT1G01510 | 21.930 | 228 | 165 | 3 | 91 | 305 | 105 | 332 | 1.19e-12 | 68.9 |
Find 92 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGTTCTTGTTCTAAGTA+TGG | 0.219870 | 4.1:-82952699 | None:intergenic |
| CATGTTCCTGAGGAGCTATT+TGG | 0.223949 | 4.1:+82955395 | MS.gene24946:CDS |
| GACTGATGATGTTGCTGATT+TGG | 0.253175 | 4.1:+82952959 | MS.gene24946:CDS |
| GCTACAACCTCTTCCGCTTA+TGG | 0.260804 | 4.1:+82952727 | MS.gene24946:CDS |
| TACCACGGCCGATGTTAATT+AGG | 0.282501 | 4.1:-82955286 | None:intergenic |
| GCCATGGCTGACCTTGTTCT+TGG | 0.291981 | 4.1:+82955476 | MS.gene24946:CDS |
| TGCACTCGTTGAAGGTCGTT+TGG | 0.294166 | 4.1:+82955337 | MS.gene24946:CDS |
| GATGTTGCTGATTTGGCTAT+TGG | 0.316026 | 4.1:+82952966 | MS.gene24946:CDS |
| GATATGTTAGAGGTGGAAAT+TGG | 0.319341 | 4.1:+82953030 | MS.gene24946:CDS |
| GTTCTGGAATAGTAGGATAT+TGG | 0.331013 | 4.1:-82955113 | None:intergenic |
| CTACAACCTCTTCCGCTTAT+GGG | 0.337685 | 4.1:+82952728 | MS.gene24946:CDS |
| ATGTTCCTGAGGAGCTATTT+GGG | 0.342324 | 4.1:+82955396 | MS.gene24946:CDS |
| AACCTAGAGGCTCATTTCCT+TGG | 0.387843 | 4.1:+82955500 | MS.gene24946:CDS |
| TGATGCTTACGCTTCTTAGA+AGG | 0.390098 | 4.1:+82952991 | MS.gene24946:CDS |
| ATTAAAACCTTCAGCTCTCT+TGG | 0.401991 | 4.1:-82955087 | None:intergenic |
| AACTGTCGGCATTATTGGGC+TGG | 0.407245 | 4.1:+82955043 | MS.gene24946:CDS |
| CGCCGTGTTGAGTTAAAAGT+TGG | 0.409513 | 4.1:-82952767 | None:intergenic |
| GCACTCGTTGAAGGTCGTTT+GGG | 0.421415 | 4.1:+82955338 | MS.gene24946:CDS |
| CTGGTCTCTGCACTCGTTGA+AGG | 0.431513 | 4.1:+82955329 | MS.gene24946:CDS |
| GGTGTTGATAAGATTGATCT+TGG | 0.438180 | 4.1:+82952888 | MS.gene24946:CDS |
| AAACCCATCACATCATCAAC+CGG | 0.447905 | 4.1:+82955231 | MS.gene24946:CDS |
| GAAGGTCGTTTGGGTGGAGC+TGG | 0.449114 | 4.1:+82955347 | MS.gene24946:CDS |
| TCTAGCCCAAATAGCTCCTC+AGG | 0.450904 | 4.1:-82955401 | None:intergenic |
| ATGTTAATTAGGAAACCCTT+TGG | 0.451535 | 4.1:-82955275 | None:intergenic |
| ATTATTGGGCTGGGAAGGAT+TGG | 0.459694 | 4.1:+82955053 | MS.gene24946:CDS |
| TAAGTTCTTGTTCTAAGTAT+GGG | 0.462386 | 4.1:-82952698 | None:intergenic |
| CTCGAAACGATTTCAAGCTT+CGG | 0.469789 | 4.1:-82952855 | None:intergenic |
| TGATGGGTTTCCTCTGTAAG+AGG | 0.471334 | 4.1:-82955218 | None:intergenic |
| AAAGCCACTGTTAACTCCCC+TGG | 0.471371 | 4.1:+82955523 | MS.gene24946:CDS |
| TGCTTCAATGAGGTCAGAAT+CGG | 0.492845 | 4.1:-82952829 | None:intergenic |
| CTTGGCAAGTGTAAGGAGAA+AGG | 0.493276 | 4.1:+82952906 | MS.gene24946:CDS |
| GATTGATCTTGGCAAGTGTA+AGG | 0.493761 | 4.1:+82952899 | MS.gene24946:CDS |
| GCGTCGATCCGTGCGGTGGT+CGG | 0.513126 | 4.1:+82952789 | MS.gene24946:CDS |
| ACATCATCAGTCAAAACATC+AGG | 0.513625 | 4.1:-82952948 | None:intergenic |
| CTCGTTGAAGGTCGTTTGGG+TGG | 0.518253 | 4.1:+82955341 | MS.gene24946:CDS |
| ACCCTAATTATGGGATCCAT+TGG | 0.520511 | 4.1:+82952648 | None:intergenic |
| ACGAGTGCAGAGACCAGCTC+TGG | 0.523782 | 4.1:-82955323 | None:intergenic |
| GAATGTGATCGATATGTTAG+AGG | 0.530505 | 4.1:+82953020 | MS.gene24946:CDS |
| ACTGTCGGCATTATTGGGCT+GGG | 0.532064 | 4.1:+82955044 | MS.gene24946:CDS |
| GGAAATCCCATAAGCGGAAG+AGG | 0.532620 | 4.1:-82952734 | None:intergenic |
| TTCCTAATTAACATCGGCCG+TGG | 0.535538 | 4.1:+82955284 | MS.gene24946:CDS |
| TTGGCAAGTGTAAGGAGAAA+GGG | 0.537192 | 4.1:+82952907 | MS.gene24946:CDS |
| GCCGTGTTGAGTTAAAAGTT+GGG | 0.543583 | 4.1:-82952766 | None:intergenic |
| CATTAACGCACTCGGTCCAA+AGG | 0.544536 | 4.1:+82955259 | MS.gene24946:CDS |
| CCTCCCGGTTGATGATGTGA+TGG | 0.545747 | 4.1:-82955235 | None:intergenic |
| TCGGCATTATTGGGCTGGGA+AGG | 0.553176 | 4.1:+82955048 | MS.gene24946:CDS |
| AACAACTAGTATATCACAGT+TGG | 0.560464 | 4.1:-82955189 | None:intergenic |
| ATCGTTTCGAGCTTCAGTGT+TGG | 0.560718 | 4.1:+82952867 | MS.gene24946:CDS |
| ATTAACGCACTCGGTCCAAA+GGG | 0.561964 | 4.1:+82955260 | MS.gene24946:CDS |
| GCATGTTGATGAGCCAGAGC+TGG | 0.562230 | 4.1:+82955310 | MS.gene24946:CDS |
| GAGTTAACAGTGGCTTTCCA+AGG | 0.564143 | 4.1:-82955517 | None:intergenic |
| GGTTTCCTCTGTAAGAGGGC+AGG | 0.567739 | 4.1:-82955213 | None:intergenic |
| AGATACAAGGAGGACGCCAA+TGG | 0.569927 | 4.1:-82952664 | None:intergenic |
| CTATTCCAGAACTCAAAAGC+AGG | 0.570346 | 4.1:+82955124 | MS.gene24946:CDS |
| TTCCAAGGAAATGAGCCTCT+AGG | 0.572892 | 4.1:-82955502 | None:intergenic |
| TGTTGCCTGCCCTCTTACAG+AGG | 0.573697 | 4.1:+82955208 | MS.gene24946:CDS |
| GGTTGAAACTCGAACTGCCA+TGG | 0.576061 | 4.1:+82955460 | MS.gene24946:CDS |
| GCAATTGCCAAGAGAGCTGA+AGG | 0.580974 | 4.1:+82955080 | MS.gene24946:CDS |
| TCCAAGAACAAGGTCAGCCA+TGG | 0.581407 | 4.1:-82955477 | None:intergenic |
| GATGCAAGCTCAACAACACT+TGG | 0.581576 | 4.1:-82955167 | None:intergenic |
| CCTCTAGGTTTCCAAGAACA+AGG | 0.585248 | 4.1:-82955487 | None:intergenic |
| TGATTATAAGTTGACAACTA+AGG | 0.586743 | 4.1:+82953061 | MS.gene24946:CDS |
| CTCCCGGTTGATGATGTGAT+GGG | 0.589362 | 4.1:-82955234 | None:intergenic |
| GCCTCATGTTGGAAGCGCCA+CGG | 0.595237 | 4.1:+82955439 | MS.gene24946:CDS |
| GTTGTATTGCTGCCTCATGT+TGG | 0.596611 | 4.1:+82955428 | MS.gene24946:CDS |
| AGAGTCATCTAGCTTAAACC+AGG | 0.597644 | 4.1:-82955541 | None:intergenic |
| CGAGTGCGTTAATGACCTCC+CGG | 0.598154 | 4.1:-82955250 | None:intergenic |
| CGGCGCGTCGATCCGTGCGG+TGG | 0.601787 | 4.1:+82952785 | MS.gene24946:CDS |
| GAGTCATCTAGCTTAAACCA+GGG | 0.602403 | 4.1:-82955540 | None:intergenic |
| GTGGTCGGAGATGCATTCGC+CGG | 0.604792 | 4.1:+82952804 | MS.gene24946:CDS |
| GGATTACTTGATGAGATACA+AGG | 0.605192 | 4.1:-82952677 | None:intergenic |
| CGGGAGGTCATTAACGCACT+CGG | 0.607092 | 4.1:+82955251 | MS.gene24946:CDS |
| AATGAGGTCAGAATCGGCAC+CGG | 0.609039 | 4.1:-82952823 | None:intergenic |
| ATGCATCTCCGACCACCGCA+CGG | 0.620236 | 4.1:-82952797 | None:intergenic |
| ACCGTGGCGCTTCCAACATG+AGG | 0.621456 | 4.1:-82955440 | None:intergenic |
| AATAGCTCCTCAGGAACATG+AGG | 0.635446 | 4.1:-82955392 | None:intergenic |
| GATGGGTTTCCTCTGTAAGA+GGG | 0.637287 | 4.1:-82955217 | None:intergenic |
| AAGGGTTTCCTAATTAACAT+CGG | 0.642821 | 4.1:+82955278 | MS.gene24946:CDS |
| TGTGATCGATATGTTAGAGG+TGG | 0.650476 | 4.1:+82953023 | MS.gene24946:CDS |
| CCTTGTTCTTGGAAACCTAG+AGG | 0.654183 | 4.1:+82955487 | MS.gene24946:CDS |
| TTTGTGGGAAATCCCATAAG+CGG | 0.659741 | 4.1:-82952740 | None:intergenic |
| AACCCATCACATCATCAACC+GGG | 0.665510 | 4.1:+82955232 | MS.gene24946:CDS |
| AAACGAGCCTCATGTTCCTG+AGG | 0.675619 | 4.1:+82955385 | MS.gene24946:CDS |
| GCTTCGGCAGTGCTTCAATG+AGG | 0.679340 | 4.1:-82952839 | None:intergenic |
| GGCAGTTCGAGTTTCAACCG+TGG | 0.681063 | 4.1:-82955456 | None:intergenic |
| AGAGGTGGAAATTGGAAACG+TGG | 0.686715 | 4.1:+82953038 | MS.gene24946:CDS |
| TAAACCAGGGGAGTTAACAG+TGG | 0.689434 | 4.1:-82955527 | None:intergenic |
| AGTCATCTAGCTTAAACCAG+GGG | 0.699457 | 4.1:-82955539 | None:intergenic |
| ACACGGCGCGTCGATCCGTG+CGG | 0.702895 | 4.1:+82952782 | MS.gene24946:CDS |
| GCTCATCAACATGCTTACCA+CGG | 0.732970 | 4.1:-82955301 | None:intergenic |
| CCATCACATCATCAACCGGG+AGG | 0.750270 | 4.1:+82955235 | MS.gene24946:CDS |
| TTACTTGATGAGATACAAGG+AGG | 0.773364 | 4.1:-82952674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATTTTTTATATTT+AGG | + | chr4.1:82953208-82953227 | MS.gene24946:intron | 0.0% |
| !! | CAAAAAGAAAATTAATTTCT+TGG | - | chr4.1:82954993-82955012 | None:intergenic | 15.0% |
| !!! | AAATTAATTTTCTTTTTGTC+TGG | + | chr4.1:82954995-82955014 | MS.gene24946:intron | 15.0% |
| !!! | TTATTTTTTATATTTAGGAC+TGG | + | chr4.1:82953213-82953232 | MS.gene24946:intron | 15.0% |
| !! | AAATATTTATAGTGCATGTT+TGG | - | chr4.1:82953558-82953577 | None:intergenic | 20.0% |
| !! | AAGCTTACAAATTGTAAATA+TGG | - | chr4.1:82954783-82954802 | None:intergenic | 20.0% |
| !! | ATATAGTTTGATTGAAATTG+CGG | + | chr4.1:82953592-82953611 | MS.gene24946:intron | 20.0% |
| !! | GTAATATTGTGAAAAATTAG+CGG | + | chr4.1:82953241-82953260 | MS.gene24946:intron | 20.0% |
| !! | TGTAAATATGGAAAAATAAG+TGG | - | chr4.1:82954771-82954790 | None:intergenic | 20.0% |
| !! | TTATGACACAATAATCTAAT+TGG | + | chr4.1:82954683-82954702 | MS.gene24946:intron | 20.0% |
| !! | TTTGTCATACTCATTAAAAT+TGG | + | chr4.1:82954887-82954906 | MS.gene24946:intron | 20.0% |
| !!! | ACATGCACTATAAATATTTT+AGG | + | chr4.1:82953559-82953578 | MS.gene24946:intron | 20.0% |
| !!! | ATAAATATTTTAGGTAGGAA+AGG | + | chr4.1:82953568-82953587 | MS.gene24946:intron | 20.0% |
| !!! | ATAAATATTTTAGGTTGGAA+AGG | + | chr4.1:82954025-82954044 | MS.gene24946:intron | 20.0% |
| !!! | TATATCCGATTTTTTTTTTG+TGG | - | chr4.1:82954932-82954951 | None:intergenic | 20.0% |
| ! | AACTAACACAATTGTATGTT+TGG | + | chr4.1:82953871-82953890 | MS.gene24946:intron | 25.0% |
| ! | AGTTAACAAGTATGAGTTAA+CGG | + | chr4.1:82953777-82953796 | MS.gene24946:intron | 25.0% |
| ! | ATACAATTGTGTTAGTACAT+CGG | - | chr4.1:82953403-82953422 | None:intergenic | 25.0% |
| ! | ATACAATTGTGTTAGTTGAT+TGG | - | chr4.1:82953868-82953887 | None:intergenic | 25.0% |
| ! | CAATGAGTCTACTTATATTT+AGG | - | chr4.1:82953161-82953180 | None:intergenic | 25.0% |
| ! | CTGTACCACAAAAAAAAAAT+CGG | + | chr4.1:82954924-82954943 | MS.gene24946:intron | 25.0% |
| ! | TACTAACACAATTGTATGTT+TGG | + | chr4.1:82953406-82953425 | MS.gene24946:intron | 25.0% |
| ! | TGCAAATCAATTGAGAAATT+CGG | - | chr4.1:82953102-82953121 | None:intergenic | 25.0% |
| !! | TAAGTTCTTGTTCTAAGTAT+GGG | - | chr4.1:82952701-82952720 | None:intergenic | 25.0% |
| !! | TGATCTATCATCATGTTTTA+AGG | + | chr4.1:82954840-82954859 | MS.gene24946:intron | 25.0% |
| !! | TGATTATAAGTTGACAACTA+AGG | + | chr4.1:82953061-82953080 | MS.gene24946:CDS | 25.0% |
| !! | TGATTTTATGTTTAGATTGG+TGG | + | chr4.1:82953293-82953312 | MS.gene24946:intron | 25.0% |
| !! | TGGTGATTTTATGTTTAGAT+TGG | + | chr4.1:82953290-82953309 | MS.gene24946:intron | 25.0% |
| !! | TTAAAAGTTGGGATTTTTGT+GGG | - | chr4.1:82952758-82952777 | None:intergenic | 25.0% |
| !! | TTAAGTTCTTGTTCTAAGTA+TGG | - | chr4.1:82952702-82952721 | None:intergenic | 25.0% |
| !! | TTGTGATTTGAAGTTAATGT+AGG | + | chr4.1:82953352-82953371 | MS.gene24946:intron | 25.0% |
| !!! | GATCTATCATCATGTTTTAA+GGG | + | chr4.1:82954841-82954860 | MS.gene24946:intron | 25.0% |
| !!! | GCACTATAAATATTTTAGGT+AGG | + | chr4.1:82953563-82953582 | MS.gene24946:intron | 25.0% |
| !!! | GCACTATAAATATTTTAGGT+TGG | + | chr4.1:82953563-82953582 | MS.gene24946:intron | 25.0% |
| !!! | TTGTAGTGTATAAGTTTTAG+AGG | + | chr4.1:82954081-82954100 | MS.gene24946:intron | 25.0% |
| !!! | TTTTTATATTTAGGACTGGA+GGG | + | chr4.1:82953217-82953236 | MS.gene24946:intron | 25.0% |
| !!! | TTTTTTATATTTAGGACTGG+AGG | + | chr4.1:82953216-82953235 | MS.gene24946:intron | 25.0% |
| AACAACTAGTATATCACAGT+TGG | - | chr4.1:82955192-82955211 | None:intergenic | 30.0% | |
| AAGGGTTTCCTAATTAACAT+CGG | + | chr4.1:82955278-82955297 | MS.gene24946:CDS | 30.0% | |
| ACACAATTGTATGTTTGGAT+TGG | + | chr4.1:82953411-82953430 | MS.gene24946:intron | 30.0% | |
| ACGTGAAAACAAATGTCATA+AGG | - | chr4.1:82954615-82954634 | None:intergenic | 30.0% | |
| ATATTGTGAAAAATTAGCGG+TGG | + | chr4.1:82953244-82953263 | MS.gene24946:intron | 30.0% | |
| ATGATGAACAGTAGAGATAA+AGG | - | chr4.1:82954211-82954230 | None:intergenic | 30.0% | |
| ATGTTAATTAGGAAACCCTT+TGG | - | chr4.1:82955278-82955297 | None:intergenic | 30.0% | |
| ATTTCTTGGTTGAAAATGCA+TGG | - | chr4.1:82954979-82954998 | None:intergenic | 30.0% | |
| ATTTGTAAGCTTGCAGAAAA+TGG | + | chr4.1:82954791-82954810 | MS.gene24946:intron | 30.0% | |
| CAATTGTATGTTTGGATTGT+TGG | + | chr4.1:82953879-82953898 | MS.gene24946:intron | 30.0% | |
| GAATAACTGATGTATCAATC+TGG | + | chr4.1:82953180-82953199 | MS.gene24946:intron | 30.0% | |
| GAGATTCAGCAAATTGAATT+GGG | - | chr4.1:82954501-82954520 | None:intergenic | 30.0% | |
| GTGCATAGTATTACTCTATT+AGG | + | chr4.1:82954183-82954202 | MS.gene24946:intron | 30.0% | |
| TGAGATTCAGCAAATTGAAT+TGG | - | chr4.1:82954502-82954521 | None:intergenic | 30.0% | |
| TTTATAGTGCATGTTTGGAT+TGG | - | chr4.1:82953553-82953572 | None:intergenic | 30.0% | |
| TTTCTTGGTTGAAAATGCAT+GGG | - | chr4.1:82954978-82954997 | None:intergenic | 30.0% | |
| ! | GTTAAAAGTTGGGATTTTTG+TGG | - | chr4.1:82952759-82952778 | None:intergenic | 30.0% |
| ! | TATAGCTTTTGTCAAAATCG+TGG | + | chr4.1:82953497-82953516 | MS.gene24946:intron | 30.0% |
| !! | AGGTTTTGTCAAAATCATAG+TGG | + | chr4.1:82953372-82953391 | MS.gene24946:intron | 30.0% |
| !! | ATTCAATTTGCTGAATCTCA+TGG | + | chr4.1:82954502-82954521 | MS.gene24946:intron | 30.0% |
| !! | TGAGAAATTCGGTGTTATTA+GGG | - | chr4.1:82953091-82953110 | None:intergenic | 30.0% |
| !! | TTGAGAAATTCGGTGTTATT+AGG | - | chr4.1:82953092-82953111 | None:intergenic | 30.0% |
| !!! | GATTTGCATTTTTAGTCTTG+TGG | + | chr4.1:82953114-82953133 | MS.gene24946:intron | 30.0% |
| AACCAATGTAGAAACACACT+TGG | + | chr4.1:82953270-82953289 | MS.gene24946:intron | 35.0% | |
| AATCACAATTGTGGCTACAT+CGG | + | chr4.1:82953669-82953688 | MS.gene24946:intron | 35.0% | |
| AATCACAATTGTGGCTACAT+TGG | + | chr4.1:82953669-82953688 | MS.gene24946:intron | 35.0% | |
| AATCTCAGTTGAATCATGGT+GGG | + | chr4.1:82954539-82954558 | MS.gene24946:intron | 35.0% | |
| ACATCATCAGTCAAAACATC+AGG | - | chr4.1:82952951-82952970 | None:intergenic | 35.0% | |
| AGGAACATAGTTGGAAATTG+TGG | + | chr4.1:82954045-82954064 | MS.gene24946:intron | 35.0% | |
| ATTAAAACCTTCAGCTCTCT+TGG | - | chr4.1:82955090-82955109 | None:intergenic | 35.0% | |
| CAAACTCAGTTGAAGTTGTA+TGG | + | chr4.1:82954318-82954337 | MS.gene24946:intron | 35.0% | |
| CTTGATATTGCAGCAAAATG+AGG | - | chr4.1:82953705-82953724 | None:intergenic | 35.0% | |
| GAAAAACTGTCGGCATTATT+GGG | + | chr4.1:82955039-82955058 | MS.gene24946:CDS | 35.0% | |
| GAAGTTCTACTTGTTTGCAT+AGG | + | chr4.1:82954728-82954747 | MS.gene24946:intron | 35.0% | |
| GAATGTGATCGATATGTTAG+AGG | + | chr4.1:82953020-82953039 | MS.gene24946:CDS | 35.0% | |
| GATATGTTAGAGGTGGAAAT+TGG | + | chr4.1:82953030-82953049 | MS.gene24946:CDS | 35.0% | |
| GGATTACTTGATGAGATACA+AGG | - | chr4.1:82952680-82952699 | None:intergenic | 35.0% | |
| TAACAAGTATGAGTTAACGG+TGG | + | chr4.1:82953780-82953799 | MS.gene24946:intron | 35.0% | |
| TGTGAATCTCAGTTGAATCA+TGG | + | chr4.1:82954535-82954554 | MS.gene24946:intron | 35.0% | |
| TTACTTGATGAGATACAAGG+AGG | - | chr4.1:82952677-82952696 | None:intergenic | 35.0% | |
| ! | CAATTGTATGTTTGGATTGG+TGG | + | chr4.1:82953414-82953433 | MS.gene24946:intron | 35.0% |
| ! | CTCATTTTGCTGCAATATCA+AGG | + | chr4.1:82953703-82953722 | MS.gene24946:intron | 35.0% |
| ! | TGTAGCTTTTGTCAAAATCG+TGG | + | chr4.1:82953834-82953853 | MS.gene24946:intron | 35.0% |
| !! | CTTGTTAACTTGTGAGTTAG+TGG | - | chr4.1:82953767-82953786 | None:intergenic | 35.0% |
| !! | GGTGTTGATAAGATTGATCT+TGG | + | chr4.1:82952888-82952907 | MS.gene24946:CDS | 35.0% |
| !! | GTTCTGGAATAGTAGGATAT+TGG | - | chr4.1:82955116-82955135 | None:intergenic | 35.0% |
| !! | TCCCAACTTTTAACTCAACA+CGG | + | chr4.1:82952765-82952784 | MS.gene24946:CDS | 35.0% |
| !! | TCGCAGTGTATAAGTTTTAG+AGG | + | chr4.1:82953628-82953647 | MS.gene24946:intron | 35.0% |
| !!! | AGTTTTAGAGGTCTCTACAA+CGG | + | chr4.1:82953640-82953659 | MS.gene24946:intron | 35.0% |
| !!! | CTTTTGAGTTCTGGAATAGT+AGG | - | chr4.1:82955123-82955142 | None:intergenic | 35.0% |
| !!! | TCATCATGTTTTAAGGGTTG+CGG | + | chr4.1:82954847-82954866 | MS.gene24946:intron | 35.0% |
| AAACCCATCACATCATCAAC+CGG | + | chr4.1:82955231-82955250 | MS.gene24946:CDS | 40.0% | |
| AGAAACCAAGTCGTTCAACT+CGG | - | chr4.1:82954582-82954601 | None:intergenic | 40.0% | |
| AGGTTGGAAAGGAACATAGT+TGG | + | chr4.1:82954036-82954055 | MS.gene24946:intron | 40.0% | |
| ATGTTCCTGAGGAGCTATTT+GGG | + | chr4.1:82955396-82955415 | MS.gene24946:CDS | 40.0% | |
| CGGCAATACAATCACAATTG+TGG | + | chr4.1:82953660-82953679 | MS.gene24946:intron | 40.0% | |
| CTATTCCAGAACTCAAAAGC+AGG | + | chr4.1:82955124-82955143 | MS.gene24946:CDS | 40.0% | |
| CTCGAAACGATTTCAAGCTT+CGG | - | chr4.1:82952858-82952877 | None:intergenic | 40.0% | |
| GAATCTCAGTTGAATCATGG+TGG | + | chr4.1:82954538-82954557 | MS.gene24946:intron | 40.0% | |
| GATTGATCTTGGCAAGTGTA+AGG | + | chr4.1:82952899-82952918 | MS.gene24946:CDS | 40.0% | |
| GCATGAATCGTAAGATAGTG+AGG | - | chr4.1:82954394-82954413 | None:intergenic | 40.0% | |
| GCCGTGTTGAGTTAAAAGTT+GGG | - | chr4.1:82952769-82952788 | None:intergenic | 40.0% | |
| GGAAAAACTGTCGGCATTAT+TGG | + | chr4.1:82955038-82955057 | MS.gene24946:CDS | 40.0% | |
| GTGGTAAGATTGATGGAATC+AGG | - | chr4.1:82953531-82953550 | None:intergenic | 40.0% | |
| TGAGTTTGGAAAAGTCTGAG+TGG | + | chr4.1:82953437-82953456 | MS.gene24946:intron | 40.0% | |
| TGATGCTTACGCTTCTTAGA+AGG | + | chr4.1:82952991-82953010 | MS.gene24946:CDS | 40.0% | |
| TGCTTCAATGAGGTCAGAAT+CGG | - | chr4.1:82952832-82952851 | None:intergenic | 40.0% | |
| TGTGATCGATATGTTAGAGG+TGG | + | chr4.1:82953023-82953042 | MS.gene24946:CDS | 40.0% | |
| TTGCTGAATCTCATGGAGTT+GGG | + | chr4.1:82954509-82954528 | MS.gene24946:intron | 40.0% | |
| TTGGCAAGTGTAAGGAGAAA+GGG | + | chr4.1:82952907-82952926 | MS.gene24946:CDS | 40.0% | |
| TTTGCTGAATCTCATGGAGT+TGG | + | chr4.1:82954508-82954527 | MS.gene24946:intron | 40.0% | |
| TTTGTGGGAAATCCCATAAG+CGG | - | chr4.1:82952743-82952762 | None:intergenic | 40.0% | |
| ! | AGTTTTTCCAGAGAACTGCA+AGG | - | chr4.1:82955027-82955046 | None:intergenic | 40.0% |
| ! | ATAGTGCATGTTTGGATTGG+TGG | - | chr4.1:82953550-82953569 | None:intergenic | 40.0% |
| ! | CACCAAGTGTGTTTCTACAT+TGG | - | chr4.1:82953275-82953294 | None:intergenic | 40.0% |
| ! | CAGTTCTCTGGAAAAACTGT+CGG | + | chr4.1:82955029-82955048 | MS.gene24946:intron | 40.0% |
| ! | GACTGATGATGTTGCTGATT+TGG | + | chr4.1:82952959-82952978 | MS.gene24946:CDS | 40.0% |
| ! | GTATTTTCCTTGCAGTTCTC+TGG | + | chr4.1:82955017-82955036 | MS.gene24946:intron | 40.0% |
| ! | GTTTGGATTGTTGGTGAGTT+TGG | + | chr4.1:82953888-82953907 | MS.gene24946:intron | 40.0% |
| !! | GATGTTGCTGATTTGGCTAT+TGG | + | chr4.1:82952966-82952985 | MS.gene24946:CDS | 40.0% |
| !! | GTTTAGATTGGTGGTGAGTT+TGG | + | chr4.1:82953302-82953321 | MS.gene24946:intron | 40.0% |
| !! | TGGATTGGTGGTAAGATTGA+TGG | - | chr4.1:82953538-82953557 | None:intergenic | 40.0% |
| !!! | AGTTTTAGAGGTCTCTGCAA+CGG | + | chr4.1:82954093-82954112 | MS.gene24946:intron | 40.0% |
| !!! | TGAATCCTGCTTTTGAGTTC+TGG | - | chr4.1:82955132-82955151 | None:intergenic | 40.0% |
| AACCCATCACATCATCAACC+GGG | + | chr4.1:82955232-82955251 | MS.gene24946:CDS | 45.0% | |
| AACCTAGAGGCTCATTTCCT+TGG | + | chr4.1:82955500-82955519 | MS.gene24946:CDS | 45.0% | |
| AATAGCTCCTCAGGAACATG+AGG | - | chr4.1:82955395-82955414 | None:intergenic | 45.0% | |
| AGAGGTGGAAATTGGAAACG+TGG | + | chr4.1:82953038-82953057 | MS.gene24946:CDS | 45.0% | |
| ATCGTTTCGAGCTTCAGTGT+TGG | + | chr4.1:82952867-82952886 | MS.gene24946:CDS | 45.0% | |
| ATTAACGCACTCGGTCCAAA+GGG | + | chr4.1:82955260-82955279 | MS.gene24946:CDS | 45.0% | |
| CATGTTCCTGAGGAGCTATT+TGG | + | chr4.1:82955395-82955414 | MS.gene24946:CDS | 45.0% | |
| CCTCTAGGTTTCCAAGAACA+AGG | - | chr4.1:82955490-82955509 | None:intergenic | 45.0% | |
| CCTTGTTCTTGGAAACCTAG+AGG | + | chr4.1:82955487-82955506 | MS.gene24946:CDS | 45.0% | |
| CGCCGTGTTGAGTTAAAAGT+TGG | - | chr4.1:82952770-82952789 | None:intergenic | 45.0% | |
| CTACAACCTCTTCCGCTTAT+GGG | + | chr4.1:82952728-82952747 | MS.gene24946:CDS | 45.0% | |
| CTTGGCAAGTGTAAGGAGAA+AGG | + | chr4.1:82952906-82952925 | MS.gene24946:CDS | 45.0% | |
| CTTGGTTGAAAATGCATGGG+TGG | - | chr4.1:82954975-82954994 | None:intergenic | 45.0% | |
| GAGCATAGTAGTGCTCTGTT+AGG | + | chr4.1:82953730-82953749 | MS.gene24946:intron | 45.0% | |
| GAGTTAACAGTGGCTTTCCA+AGG | - | chr4.1:82955520-82955539 | None:intergenic | 45.0% | |
| GATGCAAGCTCAACAACACT+TGG | - | chr4.1:82955170-82955189 | None:intergenic | 45.0% | |
| GCTCATCAACATGCTTACCA+CGG | - | chr4.1:82955304-82955323 | None:intergenic | 45.0% | |
| GTTGTATTGCTGCCTCATGT+TGG | + | chr4.1:82955428-82955447 | MS.gene24946:CDS | 45.0% | |
| TAAACCAGGGGAGTTAACAG+TGG | - | chr4.1:82955530-82955549 | None:intergenic | 45.0% | |
| TACCACGGCCGATGTTAATT+AGG | - | chr4.1:82955289-82955308 | None:intergenic | 45.0% | |
| TGGCGATTACGATCGTATTG+CGG | + | chr4.1:82953134-82953153 | MS.gene24946:intron | 45.0% | |
| TGGTGAGTTTGGTAAAGTCG+CGG | + | chr4.1:82953313-82953332 | MS.gene24946:intron | 45.0% | |
| TTCCAAGGAAATGAGCCTCT+AGG | - | chr4.1:82955505-82955524 | None:intergenic | 45.0% | |
| TTCCTAATTAACATCGGCCG+TGG | + | chr4.1:82955284-82955303 | MS.gene24946:CDS | 45.0% | |
| ! | ATTATTGGGCTGGGAAGGAT+TGG | + | chr4.1:82955053-82955072 | MS.gene24946:CDS | 45.0% |
| ! | GATGGGTTTCCTCTGTAAGA+GGG | - | chr4.1:82955220-82955239 | None:intergenic | 45.0% |
| !! | GTTTGGATTGGTGGTGAGTT+TGG | + | chr4.1:82953423-82953442 | MS.gene24946:intron | 45.0% |
| !! | TGATGGGTTTCCTCTGTAAG+AGG | - | chr4.1:82955221-82955240 | None:intergenic | 45.0% |
| AAACGAGCCTCATGTTCCTG+AGG | + | chr4.1:82955385-82955404 | MS.gene24946:CDS | 50.0% | |
| AAAGCCACTGTTAACTCCCC+TGG | + | chr4.1:82955523-82955542 | MS.gene24946:CDS | 50.0% | |
| AACTGTCGGCATTATTGGGC+TGG | + | chr4.1:82955043-82955062 | MS.gene24946:CDS | 50.0% | |
| AATGAGGTCAGAATCGGCAC+CGG | - | chr4.1:82952826-82952845 | None:intergenic | 50.0% | |
| ACTGTCGGCATTATTGGGCT+GGG | + | chr4.1:82955044-82955063 | MS.gene24946:CDS | 50.0% | |
| AGATACAAGGAGGACGCCAA+TGG | - | chr4.1:82952667-82952686 | None:intergenic | 50.0% | |
| CATTAACGCACTCGGTCCAA+AGG | + | chr4.1:82955259-82955278 | MS.gene24946:CDS | 50.0% | |
| GCAATTGCCAAGAGAGCTGA+AGG | + | chr4.1:82955080-82955099 | MS.gene24946:CDS | 50.0% | |
| GCACTCGTTGAAGGTCGTTT+GGG | + | chr4.1:82955338-82955357 | MS.gene24946:CDS | 50.0% | |
| GCTACAACCTCTTCCGCTTA+TGG | + | chr4.1:82952727-82952746 | MS.gene24946:CDS | 50.0% | |
| GGAAATCCCATAAGCGGAAG+AGG | - | chr4.1:82952737-82952756 | None:intergenic | 50.0% | |
| GGTTGAAACTCGAACTGCCA+TGG | + | chr4.1:82955460-82955479 | MS.gene24946:CDS | 50.0% | |
| TCCAAGAACAAGGTCAGCCA+TGG | - | chr4.1:82955480-82955499 | None:intergenic | 50.0% | |
| TCTAGCCCAAATAGCTCCTC+AGG | - | chr4.1:82955404-82955423 | None:intergenic | 50.0% | |
| TGCACTCGTTGAAGGTCGTT+TGG | + | chr4.1:82955337-82955356 | MS.gene24946:CDS | 50.0% | |
| ! | GTTCAACTCGGCCTGTTTCT+GGG | - | chr4.1:82954570-82954589 | None:intergenic | 50.0% |
| !! | CTCCCGGTTGATGATGTGAT+GGG | - | chr4.1:82955237-82955256 | None:intergenic | 50.0% |
| CCATCACATCATCAACCGGG+AGG | + | chr4.1:82955235-82955254 | MS.gene24946:CDS | 55.0% | |
| CGAGTGCGTTAATGACCTCC+CGG | - | chr4.1:82955253-82955272 | None:intergenic | 55.0% | |
| CGGGAGGTCATTAACGCACT+CGG | + | chr4.1:82955251-82955270 | MS.gene24946:CDS | 55.0% | |
| CGTTCAACTCGGCCTGTTTC+TGG | - | chr4.1:82954571-82954590 | None:intergenic | 55.0% | |
| CTCGTTGAAGGTCGTTTGGG+TGG | + | chr4.1:82955341-82955360 | MS.gene24946:CDS | 55.0% | |
| CTGGTCTCTGCACTCGTTGA+AGG | + | chr4.1:82955329-82955348 | MS.gene24946:CDS | 55.0% | |
| GCCATGGCTGACCTTGTTCT+TGG | + | chr4.1:82955476-82955495 | MS.gene24946:CDS | 55.0% | |
| GCTTCGGCAGTGCTTCAATG+AGG | - | chr4.1:82952842-82952861 | None:intergenic | 55.0% | |
| GGTGGGTACATCCCAGAAAC+AGG | + | chr4.1:82954556-82954575 | MS.gene24946:intron | 55.0% | |
| GGTTTCCTCTGTAAGAGGGC+AGG | - | chr4.1:82955216-82955235 | None:intergenic | 55.0% | |
| TGTTGCCTGCCCTCTTACAG+AGG | + | chr4.1:82955208-82955227 | MS.gene24946:CDS | 55.0% | |
| ! | ACAGGCCGAGTTGAACGACT+TGG | + | chr4.1:82954574-82954593 | MS.gene24946:intron | 55.0% |
| ! | GCATGTTGATGAGCCAGAGC+TGG | + | chr4.1:82955310-82955329 | MS.gene24946:CDS | 55.0% |
| ! | GGCAGTTCGAGTTTCAACCG+TGG | - | chr4.1:82955459-82955478 | None:intergenic | 55.0% |
| ! | TCGGCATTATTGGGCTGGGA+AGG | + | chr4.1:82955048-82955067 | MS.gene24946:CDS | 55.0% |
| !! | CCTCCCGGTTGATGATGTGA+TGG | - | chr4.1:82955238-82955257 | None:intergenic | 55.0% |
| ACCGTGGCGCTTCCAACATG+AGG | - | chr4.1:82955443-82955462 | None:intergenic | 60.0% | |
| ACGAGTGCAGAGACCAGCTC+TGG | - | chr4.1:82955326-82955345 | None:intergenic | 60.0% | |
| ATGCATCTCCGACCACCGCA+CGG | - | chr4.1:82952800-82952819 | None:intergenic | 60.0% | |
| GAAGGTCGTTTGGGTGGAGC+TGG | + | chr4.1:82955347-82955366 | MS.gene24946:CDS | 60.0% | |
| GTGGTCGGAGATGCATTCGC+CGG | + | chr4.1:82952804-82952823 | MS.gene24946:CDS | 60.0% | |
| !! | GCCTCATGTTGGAAGCGCCA+CGG | + | chr4.1:82955439-82955458 | MS.gene24946:CDS | 60.0% |
| ! | ACACGGCGCGTCGATCCGTG+CGG | + | chr4.1:82952782-82952801 | MS.gene24946:CDS | 70.0% |
| ! | GCGTCGATCCGTGCGGTGGT+CGG | + | chr4.1:82952789-82952808 | MS.gene24946:CDS | 70.0% |
| !! | CGGCGCGTCGATCCGTGCGG+TGG | + | chr4.1:82952785-82952804 | MS.gene24946:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 82952657 | 82955550 | 82952657 | ID=MS.gene24946 |
| chr4.1 | mRNA | 82952657 | 82955550 | 82952657 | ID=MS.gene24946.t1;Parent=MS.gene24946 |
| chr4.1 | exon | 82952657 | 82953082 | 82952657 | ID=MS.gene24946.t1.exon1;Parent=MS.gene24946.t1 |
| chr4.1 | CDS | 82952657 | 82953082 | 82952657 | ID=cds.MS.gene24946.t1;Parent=MS.gene24946.t1 |
| chr4.1 | exon | 82955032 | 82955550 | 82955032 | ID=MS.gene24946.t1.exon2;Parent=MS.gene24946.t1 |
| chr4.1 | CDS | 82955032 | 82955550 | 82955032 | ID=cds.MS.gene24946.t1;Parent=MS.gene24946.t1 |
| Gene Sequence |
| Protein sequence |
