Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019404.t1 | KEH19019.1 | 89.2 | 334 | 35 | 1 | 1 | 334 | 1 | 333 | 9.20E-164 | 586.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019404.t1 | Q9LE33 | 53.2 | 327 | 138 | 5 | 13 | 333 | 3 | 320 | 3.5e-87 | 323.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019404.t1 | A0A072TNE4 | 89.2 | 334 | 35 | 1 | 1 | 334 | 1 | 333 | 6.6e-164 | 586.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029300 | MS.gene019404 | PPI |
| MS.gene24947 | MS.gene019404 | PPI |
| MS.gene017129 | MS.gene019404 | PPI |
| MS.gene038363 | MS.gene019404 | PPI |
| MS.gene24945 | MS.gene019404 | PPI |
| MS.gene07262 | MS.gene019404 | PPI |
| MS.gene24946 | MS.gene019404 | PPI |
| MS.gene33396 | MS.gene019404 | PPI |
| MS.gene068259 | MS.gene019404 | PPI |
| MS.gene33394 | MS.gene019404 | PPI |
| MS.gene062351 | MS.gene019404 | PPI |
| MS.gene37513 | MS.gene019404 | PPI |
| MS.gene20783 | MS.gene019404 | PPI |
| MS.gene068263 | MS.gene019404 | PPI |
| MS.gene74946 | MS.gene019404 | PPI |
| MS.gene33395 | MS.gene019404 | PPI |
| MS.gene76198 | MS.gene019404 | PPI |
| MS.gene065032 | MS.gene019404 | PPI |
| MS.gene068262 | MS.gene019404 | PPI |
| MS.gene030057 | MS.gene019404 | PPI |
| MS.gene20834 | MS.gene019404 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019404.t1 | MTR_8g033400 | 89.222 | 334 | 35 | 1 | 1 | 334 | 1 | 333 | 0.0 | 605 |
| MS.gene019404.t1 | MTR_8g033410 | 77.545 | 334 | 67 | 1 | 1 | 334 | 1 | 326 | 0.0 | 529 |
| MS.gene019404.t1 | MTR_8g033390 | 60.938 | 320 | 124 | 1 | 16 | 334 | 4 | 323 | 4.27e-141 | 402 |
| MS.gene019404.t1 | MTR_7g075830 | 54.545 | 297 | 120 | 5 | 51 | 333 | 19 | 314 | 6.93e-101 | 300 |
| MS.gene019404.t1 | MTR_4g013100 | 41.503 | 306 | 168 | 3 | 32 | 334 | 17 | 314 | 1.03e-84 | 258 |
| MS.gene019404.t1 | MTR_4g012960 | 41.584 | 303 | 169 | 2 | 32 | 334 | 16 | 310 | 1.14e-84 | 258 |
| MS.gene019404.t1 | MTR_4g013090 | 41.830 | 306 | 167 | 3 | 32 | 334 | 16 | 313 | 2.04e-84 | 258 |
| MS.gene019404.t1 | MTR_2g101840 | 44.079 | 304 | 164 | 3 | 32 | 334 | 16 | 314 | 2.58e-80 | 247 |
| MS.gene019404.t1 | MTR_4g013135 | 43.599 | 289 | 152 | 3 | 49 | 334 | 33 | 313 | 1.36e-70 | 222 |
| MS.gene019404.t1 | MTR_3g005970 | 26.990 | 289 | 171 | 7 | 69 | 329 | 99 | 375 | 6.12e-25 | 103 |
| MS.gene019404.t1 | MTR_1g112510 | 27.907 | 258 | 162 | 3 | 94 | 329 | 94 | 349 | 1.58e-22 | 97.4 |
| MS.gene019404.t1 | MTR_4g005880 | 26.761 | 284 | 190 | 7 | 63 | 332 | 127 | 406 | 1.76e-18 | 86.7 |
| MS.gene019404.t1 | MTR_1g107480 | 26.923 | 234 | 158 | 5 | 87 | 313 | 119 | 346 | 5.19e-17 | 82.4 |
| MS.gene019404.t1 | MTR_6g007170 | 26.592 | 267 | 171 | 7 | 76 | 327 | 111 | 367 | 3.08e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019404.t1 | AT2G45630 | 53.731 | 335 | 147 | 5 | 4 | 334 | 8 | 338 | 7.56e-122 | 354 |
| MS.gene019404.t1 | AT1G12550 | 53.211 | 327 | 138 | 5 | 13 | 333 | 3 | 320 | 1.48e-113 | 332 |
| MS.gene019404.t1 | AT1G79870 | 41.290 | 310 | 171 | 3 | 28 | 334 | 12 | 313 | 4.44e-78 | 241 |
| MS.gene019404.t1 | AT1G79870 | 41.606 | 274 | 139 | 2 | 61 | 334 | 42 | 294 | 2.07e-68 | 216 |
| MS.gene019404.t1 | AT2G45630 | 47.239 | 163 | 79 | 4 | 4 | 163 | 8 | 166 | 1.25e-39 | 138 |
| MS.gene019404.t1 | AT5G28310 | 37.113 | 194 | 70 | 3 | 142 | 334 | 91 | 233 | 3.52e-30 | 115 |
| MS.gene019404.t1 | AT1G72190 | 25.688 | 327 | 202 | 10 | 12 | 316 | 46 | 353 | 1.99e-27 | 110 |
| MS.gene019404.t1 | AT1G68010 | 28.682 | 258 | 160 | 3 | 94 | 329 | 94 | 349 | 7.14e-23 | 98.6 |
| MS.gene019404.t1 | AT1G68010 | 29.317 | 249 | 152 | 3 | 94 | 320 | 94 | 340 | 3.19e-22 | 96.3 |
| MS.gene019404.t1 | AT1G68010 | 28.571 | 259 | 160 | 4 | 94 | 329 | 94 | 350 | 2.78e-21 | 94.0 |
| MS.gene019404.t1 | AT1G17745 | 25.532 | 282 | 188 | 8 | 67 | 332 | 125 | 400 | 4.98e-19 | 88.6 |
| MS.gene019404.t1 | AT3G19480 | 29.020 | 255 | 165 | 8 | 67 | 312 | 89 | 336 | 5.30e-18 | 85.1 |
| MS.gene019404.t1 | AT4G34200 | 26.538 | 260 | 170 | 6 | 87 | 331 | 125 | 378 | 2.00e-17 | 83.6 |
| MS.gene019404.t1 | AT5G14780 | 25.403 | 248 | 166 | 6 | 92 | 327 | 99 | 339 | 6.46e-17 | 80.9 |
| MS.gene019404.t1 | AT5G14780 | 25.403 | 248 | 166 | 6 | 92 | 327 | 111 | 351 | 7.40e-17 | 80.9 |
| MS.gene019404.t1 | AT5G14780 | 25.403 | 248 | 166 | 6 | 92 | 327 | 125 | 365 | 9.71e-17 | 80.9 |
| MS.gene019404.t1 | AT1G17745 | 24.013 | 304 | 192 | 8 | 67 | 332 | 125 | 427 | 5.54e-16 | 79.3 |
Find 91 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTCGTGGAACAAAATT+TGG | 0.191247 | 8.2:+63847854 | MS.gene019404:CDS |
| AAGAACTCTTTAGGAATATT+AGG | 0.194193 | 8.2:-63847762 | None:intergenic |
| GCATAATATCATACAATTCT+AGG | 0.238026 | 8.2:+63847481 | MS.gene019404:CDS |
| TTCTGAAGATGTTGCTGATA+TGG | 0.254694 | 8.2:+63846731 | MS.gene019404:CDS |
| TGACTGGTGTTTCAGTTAAC+AGG | 0.275368 | 8.2:+63847387 | MS.gene019404:intron |
| GTGTCGACGTCGCGGAATTC+AGG | 0.313830 | 8.2:+63846686 | MS.gene019404:CDS |
| TCCAATGAAAAGAACTCTTT+AGG | 0.322889 | 8.2:-63847771 | None:intergenic |
| GCTTCAGCCGCCTGCATCTT+GGG | 0.337052 | 8.2:+63846818 | MS.gene019404:CDS |
| TGCAAACAAGACGGAGGGCG+GGG | 0.358454 | 8.2:-63846626 | None:intergenic |
| TGATATGGCTGTGGCTTTGT+TGG | 0.364353 | 8.2:+63846746 | MS.gene019404:CDS |
| TGGAGGATGAAGGAGAATTC+AGG | 0.382969 | 8.2:-63846450 | None:intergenic |
| ATGGAAATTGTGAGAAGGAT+TGG | 0.386915 | 8.2:-63846475 | None:intergenic |
| AGCTTCAGCCGCCTGCATCT+TGG | 0.390288 | 8.2:+63846817 | MS.gene019404:CDS |
| CTCCCAAAGGTATTCCTTCA+TGG | 0.392849 | 8.2:+63846423 | MS.gene019404:CDS |
| TTTACTTCAGAGTCTTTCAT+TGG | 0.394682 | 8.2:+63847825 | MS.gene019404:CDS |
| GAGAAGAAGGGTTTAAGATA+TGG | 0.395144 | 8.2:-63846494 | None:intergenic |
| TGGAGAGGAGGATGAGAAGA+AGG | 0.404161 | 8.2:-63846507 | None:intergenic |
| GACGGAGGGCGGGGAGAAGT+TGG | 0.409298 | 8.2:-63846617 | None:intergenic |
| GGAATTCAGGTTGCCGGAGC+TGG | 0.410518 | 8.2:+63846699 | MS.gene019404:CDS |
| GGAGGCATGGTGAGGATTGA+GGG | 0.414126 | 8.2:-63846541 | None:intergenic |
| GTGCAAACAAGACGGAGGGC+GGG | 0.419214 | 8.2:-63846627 | None:intergenic |
| GGTGCAAACAAGACGGAGGG+CGG | 0.423241 | 8.2:-63846628 | None:intergenic |
| AGGTGCTCTCATTGATGAAA+AGG | 0.435320 | 8.2:+63847674 | MS.gene019404:CDS |
| GGACCATGAAGGAATACCTT+TGG | 0.435760 | 8.2:-63846426 | None:intergenic |
| TGTTGACAATGTGCCATGTT+TGG | 0.446795 | 8.2:-63847599 | None:intergenic |
| TTGGAGGACATCGGCGTTGA+CGG | 0.446845 | 8.2:-63846598 | None:intergenic |
| AGGAGGCATGGTGAGGATTG+AGG | 0.447068 | 8.2:-63846542 | None:intergenic |
| AGGATTGGGTTGGAGGATGA+AGG | 0.451140 | 8.2:-63846460 | None:intergenic |
| GACCATGAAGGAATACCTTT+GGG | 0.452835 | 8.2:-63846425 | None:intergenic |
| AAAGATTGGAATTGTTGGTA+TGG | 0.453340 | 8.2:+63847413 | MS.gene019404:CDS |
| TGTTTGATTGAAGATGAGAT+TGG | 0.458698 | 8.2:+63847708 | MS.gene019404:CDS |
| ATTGTTGGTATGGGAAGAAT+TGG | 0.461025 | 8.2:+63847423 | MS.gene019404:CDS |
| CAAAGAAGTCATGTTGGCAT+TGG | 0.461896 | 8.2:+63847620 | MS.gene019404:CDS |
| AAAGAAGTCATGTTGGCATT+GGG | 0.462215 | 8.2:+63847621 | MS.gene019404:CDS |
| TGTGAGAAGGATTGGGTTGG+AGG | 0.462813 | 8.2:-63846467 | None:intergenic |
| TGGAAATTGTGAGAAGGATT+GGG | 0.463593 | 8.2:-63846474 | None:intergenic |
| GAGATCAATATGATCAGTTC+CGG | 0.464182 | 8.2:-63846658 | None:intergenic |
| GAAGCTGTCTTCTCAAGAAC+CGG | 0.468027 | 8.2:-63846800 | None:intergenic |
| GGAGGAATTATAGTGAATGT+TGG | 0.468232 | 8.2:+63847648 | MS.gene019404:CDS |
| TATGATCAGTTCCGGCGCTA+GGG | 0.486905 | 8.2:-63846650 | None:intergenic |
| GAAGATGAGATTGGAGGTGC+TGG | 0.487892 | 8.2:+63847717 | MS.gene019404:CDS |
| ATATGATCAGTTCCGGCGCT+AGG | 0.495157 | 8.2:-63846651 | None:intergenic |
| GACAATAGCGGCAATGGAGG+AGG | 0.501959 | 8.2:-63846559 | None:intergenic |
| GTCATGTTGGCATTGGGAAA+AGG | 0.502044 | 8.2:+63847627 | MS.gene019404:CDS |
| GTGGCTTTGTTGGTTGATGT+TGG | 0.505017 | 8.2:+63846756 | MS.gene019404:CDS |
| CGTCGCGGAATTCAGGTTGC+CGG | 0.509522 | 8.2:+63846693 | MS.gene019404:CDS |
| GAGGATTGAGGGATAAGAAT+TGG | 0.512540 | 8.2:-63846530 | None:intergenic |
| ATCAGCACCAACTATATGAC+TGG | 0.513016 | 8.2:-63847909 | None:intergenic |
| GGAGAGGAGGATGAGAAGAA+GGG | 0.517048 | 8.2:-63846506 | None:intergenic |
| AAGATTGGAATTGTTGGTAT+GGG | 0.525390 | 8.2:+63847414 | MS.gene019404:CDS |
| CTTGTTTGCACCCCTAGCGC+CGG | 0.526289 | 8.2:+63846639 | MS.gene019404:CDS |
| GGAGGGCGGGGAGAAGTTGG+AGG | 0.527008 | 8.2:-63846614 | None:intergenic |
| CATTGGTATCTGCCAACTCG+TGG | 0.531474 | 8.2:+63847842 | MS.gene019404:CDS |
| GCCGCTATTGTCTGTATCGT+CGG | 0.532819 | 8.2:+63846570 | MS.gene019404:CDS |
| CTTTGTTGGTTGATGTTGGT+AGG | 0.535021 | 8.2:+63846760 | MS.gene019404:CDS |
| GGAAGATTTCAGCTGCGGAC+CGG | 0.546304 | 8.2:+63846781 | MS.gene019404:CDS |
| AATTGTGAGAAGGATTGGGT+TGG | 0.550046 | 8.2:-63846470 | None:intergenic |
| GATACAGACAATAGCGGCAA+TGG | 0.551338 | 8.2:-63846565 | None:intergenic |
| AGTGGAAAATCCCAAGATGC+AGG | 0.552755 | 8.2:-63846828 | None:intergenic |
| GATAAGAATTGGTGGAGAGG+AGG | 0.555304 | 8.2:-63846519 | None:intergenic |
| ATTATAGTGAATGTTGGAAG+AGG | 0.555952 | 8.2:+63847654 | MS.gene019404:CDS |
| AAGATATGGAAATTGTGAGA+AGG | 0.559376 | 8.2:-63846480 | None:intergenic |
| GATTGAGGGATAAGAATTGG+TGG | 0.574137 | 8.2:-63846527 | None:intergenic |
| GTGAACTAAACGACCAAACA+TGG | 0.576631 | 8.2:+63847586 | MS.gene019404:CDS |
| AGGGATAAGAATTGGTGGAG+AGG | 0.577295 | 8.2:-63846522 | None:intergenic |
| AGATGTTGCTGATATGGCTG+TGG | 0.577311 | 8.2:+63846737 | MS.gene019404:CDS |
| ACACAGCTGCATGTGGTGAA+AGG | 0.589949 | 8.2:-63847803 | None:intergenic |
| ATGATCAGTTCCGGCGCTAG+GGG | 0.590591 | 8.2:-63846649 | None:intergenic |
| ACAGACAATAGCGGCAATGG+AGG | 0.591634 | 8.2:-63846562 | None:intergenic |
| AGAATTCAGGTGGACCATGA+AGG | 0.593598 | 8.2:-63846437 | None:intergenic |
| CGCTAGGGGTGCAAACAAGA+CGG | 0.593944 | 8.2:-63846635 | None:intergenic |
| GGGGAGAAGTTGGAGGACAT+CGG | 0.595784 | 8.2:-63846607 | None:intergenic |
| CTCGTTGAGTGTCGACGTCG+CGG | 0.600196 | 8.2:+63846678 | MS.gene019404:CDS |
| TTGATTGAAGATGAGATTGG+AGG | 0.601317 | 8.2:+63847711 | MS.gene019404:CDS |
| TAGCGGCAATGGAGGAGGCA+TGG | 0.602465 | 8.2:-63846554 | None:intergenic |
| TGTCAACAAAGAAGTCATGT+TGG | 0.608970 | 8.2:+63847614 | MS.gene019404:CDS |
| AGGGGTGCAAACAAGACGGA+GGG | 0.614204 | 8.2:-63846631 | None:intergenic |
| AGAAAATAATAATCTCCCAA+AGG | 0.624465 | 8.2:+63846410 | MS.gene019404:CDS |
| ACAACATAAAATGAGTACAT+TGG | 0.629848 | 8.2:-63847565 | None:intergenic |
| TTGCAGACCTTAGAACCAAG+TGG | 0.630404 | 8.2:-63846846 | None:intergenic |
| GACTGGTGTTTCAGTTAACA+GGG | 0.631514 | 8.2:+63847388 | MS.gene019404:intron |
| TGGTAGGAAGATTTCAGCTG+CGG | 0.633217 | 8.2:+63846776 | MS.gene019404:CDS |
| ATGTTGGCATTGGGAAAAGG+AGG | 0.641097 | 8.2:+63847630 | MS.gene019404:CDS |
| TATATGACTGGACTAATCAG+AGG | 0.655652 | 8.2:-63847897 | None:intergenic |
| GCAATGGAGGAGGCATGGTG+AGG | 0.666359 | 8.2:-63846549 | None:intergenic |
| AGGATGAAGGAGAATTCAGG+TGG | 0.673115 | 8.2:-63846447 | None:intergenic |
| TTGGCTCAGAAGTCGCAAAG+AGG | 0.673470 | 8.2:+63847442 | MS.gene019404:CDS |
| GAAGTAAACACAGCTGCATG+TGG | 0.680602 | 8.2:-63847810 | None:intergenic |
| GGAAAATCCCAAGATGCAGG+CGG | 0.680887 | 8.2:-63846825 | None:intergenic |
| TAGGGGTGCAAACAAGACGG+AGG | 0.681123 | 8.2:-63846632 | None:intergenic |
| GCCGACGATACAGACAATAG+CGG | 0.751275 | 8.2:-63846571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATACATAATATATACA+CGG | + | chr8.2:63847215-63847234 | MS.gene019404:intron | 10.0% |
| !! | ATATTTAGTAGTAATAATTT+AGG | + | chr8.2:63846931-63846950 | MS.gene019404:intron | 10.0% |
| !! | ATTGTAAAAATAAAATATTC+AGG | - | chr8.2:63846992-63847011 | None:intergenic | 10.0% |
| !! | ATGTTAGTTGTAAATTTCTA+AGG | - | chr8.2:63847287-63847306 | None:intergenic | 20.0% |
| !!! | TATGTGATTTGAAATTTACA+AGG | + | chr8.2:63847238-63847257 | MS.gene019404:intron | 20.0% |
| ! | ACAACATAAAATGAGTACAT+TGG | - | chr8.2:63847568-63847587 | None:intergenic | 25.0% |
| ! | AGAAAATAATAATCTCCCAA+AGG | + | chr8.2:63846410-63846429 | MS.gene019404:CDS | 25.0% |
| ! | GCATAATATCATACAATTCT+AGG | + | chr8.2:63847481-63847500 | MS.gene019404:CDS | 25.0% |
| ! | TAAAAATAACAGTACGATGT+CGG | - | chr8.2:63847149-63847168 | None:intergenic | 25.0% |
| !! | AAGAACTCTTTAGGAATATT+AGG | - | chr8.2:63847765-63847784 | None:intergenic | 25.0% |
| !! | TGGGAGATTATTATTTTCTT+GGG | - | chr8.2:63846409-63846428 | None:intergenic | 25.0% |
| !! | TTGGGAGATTATTATTTTCT+TGG | - | chr8.2:63846410-63846429 | None:intergenic | 25.0% |
| !! | TTTGATAACAAATATGTGAC+TGG | + | chr8.2:63847371-63847390 | MS.gene019404:intron | 25.0% |
| AAAGATTGGAATTGTTGGTA+TGG | + | chr8.2:63847413-63847432 | MS.gene019404:CDS | 30.0% | |
| AAGATATGGAAATTGTGAGA+AGG | - | chr8.2:63846483-63846502 | None:intergenic | 30.0% | |
| AAGATTGGAATTGTTGGTAT+GGG | + | chr8.2:63847414-63847433 | MS.gene019404:CDS | 30.0% | |
| AATAAATAAACACGACGACT+TGG | - | chr8.2:63847029-63847048 | None:intergenic | 30.0% | |
| ATACTTGTAGCTAGTATGAA+TGG | - | chr8.2:63847342-63847361 | None:intergenic | 30.0% | |
| ATTATAGTGAATGTTGGAAG+AGG | + | chr8.2:63847654-63847673 | MS.gene019404:CDS | 30.0% | |
| TAGGTGATACACAAGATATT+CGG | + | chr8.2:63846950-63846969 | MS.gene019404:intron | 30.0% | |
| TCCAATGAAAAGAACTCTTT+AGG | - | chr8.2:63847774-63847793 | None:intergenic | 30.0% | |
| TGTTTGATTGAAGATGAGAT+TGG | + | chr8.2:63847708-63847727 | MS.gene019404:CDS | 30.0% | |
| TTTACTTCAGAGTCTTTCAT+TGG | + | chr8.2:63847825-63847844 | MS.gene019404:CDS | 30.0% | |
| ! | TCCTAAAGAGTTCTTTTCAT+TGG | + | chr8.2:63847770-63847789 | MS.gene019404:CDS | 30.0% |
| AAAGAAGTCATGTTGGCATT+GGG | + | chr8.2:63847621-63847640 | MS.gene019404:CDS | 35.0% | |
| AGAAAAAAGATTTCCAGCTC+CGG | - | chr8.2:63846715-63846734 | None:intergenic | 35.0% | |
| ATGGAAATTGTGAGAAGGAT+TGG | - | chr8.2:63846478-63846497 | None:intergenic | 35.0% | |
| ATTGTTGGTATGGGAAGAAT+TGG | + | chr8.2:63847423-63847442 | MS.gene019404:CDS | 35.0% | |
| CAGTTAACAGGGAAAAAGAT+TGG | + | chr8.2:63847399-63847418 | MS.gene019404:intron | 35.0% | |
| GAGATCAATATGATCAGTTC+CGG | - | chr8.2:63846661-63846680 | None:intergenic | 35.0% | |
| GGAGGAATTATAGTGAATGT+TGG | + | chr8.2:63847648-63847667 | MS.gene019404:CDS | 35.0% | |
| GGGAAAAAGATTGGAATTGT+TGG | + | chr8.2:63847408-63847427 | MS.gene019404:CDS | 35.0% | |
| TATATGACTGGACTAATCAG+AGG | - | chr8.2:63847900-63847919 | None:intergenic | 35.0% | |
| TGGAAATTGTGAGAAGGATT+GGG | - | chr8.2:63846477-63846496 | None:intergenic | 35.0% | |
| TGTCAACAAAGAAGTCATGT+TGG | + | chr8.2:63847614-63847633 | MS.gene019404:CDS | 35.0% | |
| TGTCCTTAACAACTGAGTTA+CGG | - | chr8.2:63847196-63847215 | None:intergenic | 35.0% | |
| TTGATTGAAGATGAGATTGG+AGG | + | chr8.2:63847711-63847730 | MS.gene019404:CDS | 35.0% | |
| TTGCTTCACATGATACAGAT+TGG | + | chr8.2:63847081-63847100 | MS.gene019404:intron | 35.0% | |
| ! | GAGAAGAAGGGTTTAAGATA+TGG | - | chr8.2:63846497-63846516 | None:intergenic | 35.0% |
| ! | TTCTGAAGATGTTGCTGATA+TGG | + | chr8.2:63846731-63846750 | MS.gene019404:CDS | 35.0% |
| AATTGTGAGAAGGATTGGGT+TGG | - | chr8.2:63846473-63846492 | None:intergenic | 40.0% | |
| AGGTGCTCTCATTGATGAAA+AGG | + | chr8.2:63847674-63847693 | MS.gene019404:CDS | 40.0% | |
| CAAAGAAGTCATGTTGGCAT+TGG | + | chr8.2:63847620-63847639 | MS.gene019404:CDS | 40.0% | |
| CCAACTCGTGGAACAAAATT+TGG | + | chr8.2:63847854-63847873 | MS.gene019404:CDS | 40.0% | |
| GACCATGAAGGAATACCTTT+GGG | - | chr8.2:63846428-63846447 | None:intergenic | 40.0% | |
| GACTGGTGTTTCAGTTAACA+GGG | + | chr8.2:63847388-63847407 | MS.gene019404:intron | 40.0% | |
| GAGGATTGAGGGATAAGAAT+TGG | - | chr8.2:63846533-63846552 | None:intergenic | 40.0% | |
| GATTGAGGGATAAGAATTGG+TGG | - | chr8.2:63846530-63846549 | None:intergenic | 40.0% | |
| GTGAACTAAACGACCAAACA+TGG | + | chr8.2:63847586-63847605 | MS.gene019404:CDS | 40.0% | |
| TCTCCGTAACTCAGTTGTTA+AGG | + | chr8.2:63847190-63847209 | MS.gene019404:intron | 40.0% | |
| TGACTGGTGTTTCAGTTAAC+AGG | + | chr8.2:63847387-63847406 | MS.gene019404:intron | 40.0% | |
| TGTTGACAATGTGCCATGTT+TGG | - | chr8.2:63847602-63847621 | None:intergenic | 40.0% | |
| ! | CCAAATTTTGTTCCACGAGT+TGG | - | chr8.2:63847857-63847876 | None:intergenic | 40.0% |
| ! | CTTTGTTGGTTGATGTTGGT+AGG | + | chr8.2:63846760-63846779 | MS.gene019404:CDS | 40.0% |
| !!! | GGATTTTCCACTTGGTTCTA+AGG | + | chr8.2:63846839-63846858 | MS.gene019404:CDS | 40.0% |
| AGAATTCAGGTGGACCATGA+AGG | - | chr8.2:63846440-63846459 | None:intergenic | 45.0% | |
| AGATGTTGCTGATATGGCTG+TGG | + | chr8.2:63846737-63846756 | MS.gene019404:CDS | 45.0% | |
| AGGATGAAGGAGAATTCAGG+TGG | - | chr8.2:63846450-63846469 | None:intergenic | 45.0% | |
| AGGGATAAGAATTGGTGGAG+AGG | - | chr8.2:63846525-63846544 | None:intergenic | 45.0% | |
| AGTGGAAAATCCCAAGATGC+AGG | - | chr8.2:63846831-63846850 | None:intergenic | 45.0% | |
| GAAGCTGTCTTCTCAAGAAC+CGG | - | chr8.2:63846803-63846822 | None:intergenic | 45.0% | |
| GAAGTAAACACAGCTGCATG+TGG | - | chr8.2:63847813-63847832 | None:intergenic | 45.0% | |
| GATAAGAATTGGTGGAGAGG+AGG | - | chr8.2:63846522-63846541 | None:intergenic | 45.0% | |
| GATACAGACAATAGCGGCAA+TGG | - | chr8.2:63846568-63846587 | None:intergenic | 45.0% | |
| GGACCATGAAGGAATACCTT+TGG | - | chr8.2:63846429-63846448 | None:intergenic | 45.0% | |
| TGGAGGATGAAGGAGAATTC+AGG | - | chr8.2:63846453-63846472 | None:intergenic | 45.0% | |
| TGGTAGGAAGATTTCAGCTG+CGG | + | chr8.2:63846776-63846795 | MS.gene019404:CDS | 45.0% | |
| TTGCAGACCTTAGAACCAAG+TGG | - | chr8.2:63846849-63846868 | None:intergenic | 45.0% | |
| ! | ATGTTGGCATTGGGAAAAGG+AGG | + | chr8.2:63847630-63847649 | MS.gene019404:CDS | 45.0% |
| ! | GCATCTTGGGATTTTCCACT+TGG | + | chr8.2:63846831-63846850 | MS.gene019404:CDS | 45.0% |
| ! | GTCATGTTGGCATTGGGAAA+AGG | + | chr8.2:63847627-63847646 | MS.gene019404:CDS | 45.0% |
| !! | CTCCCAAAGGTATTCCTTCA+TGG | + | chr8.2:63846423-63846442 | MS.gene019404:CDS | 45.0% |
| !! | GTGGCTTTGTTGGTTGATGT+TGG | + | chr8.2:63846756-63846775 | MS.gene019404:CDS | 45.0% |
| !! | TGATATGGCTGTGGCTTTGT+TGG | + | chr8.2:63846746-63846765 | MS.gene019404:CDS | 45.0% |
| ACACAGCTGCATGTGGTGAA+AGG | - | chr8.2:63847806-63847825 | None:intergenic | 50.0% | |
| ACAGACAATAGCGGCAATGG+AGG | - | chr8.2:63846565-63846584 | None:intergenic | 50.0% | |
| ATATGATCAGTTCCGGCGCT+AGG | - | chr8.2:63846654-63846673 | None:intergenic | 50.0% | |
| CATTGGTATCTGCCAACTCG+TGG | + | chr8.2:63847842-63847861 | MS.gene019404:CDS | 50.0% | |
| GCCGACGATACAGACAATAG+CGG | - | chr8.2:63846574-63846593 | None:intergenic | 50.0% | |
| GCCGCTATTGTCTGTATCGT+CGG | + | chr8.2:63846570-63846589 | MS.gene019404:CDS | 50.0% | |
| GGAAAATCCCAAGATGCAGG+CGG | - | chr8.2:63846828-63846847 | None:intergenic | 50.0% | |
| GGAGAGGAGGATGAGAAGAA+GGG | - | chr8.2:63846509-63846528 | None:intergenic | 50.0% | |
| TATGATCAGTTCCGGCGCTA+GGG | - | chr8.2:63846653-63846672 | None:intergenic | 50.0% | |
| TGGAGAGGAGGATGAGAAGA+AGG | - | chr8.2:63846510-63846529 | None:intergenic | 50.0% | |
| TTGGCTCAGAAGTCGCAAAG+AGG | + | chr8.2:63847442-63847461 | MS.gene019404:CDS | 50.0% | |
| ! | GAAGATGAGATTGGAGGTGC+TGG | + | chr8.2:63847717-63847736 | MS.gene019404:CDS | 50.0% |
| !! | AGGATTGGGTTGGAGGATGA+AGG | - | chr8.2:63846463-63846482 | None:intergenic | 50.0% |
| !! | TGTGAGAAGGATTGGGTTGG+AGG | - | chr8.2:63846470-63846489 | None:intergenic | 50.0% |
| ATGATCAGTTCCGGCGCTAG+GGG | - | chr8.2:63846652-63846671 | None:intergenic | 55.0% | |
| GACAATAGCGGCAATGGAGG+AGG | - | chr8.2:63846562-63846581 | None:intergenic | 55.0% | |
| GGAAGATTTCAGCTGCGGAC+CGG | + | chr8.2:63846781-63846800 | MS.gene019404:CDS | 55.0% | |
| GGGGAGAAGTTGGAGGACAT+CGG | - | chr8.2:63846610-63846629 | None:intergenic | 55.0% | |
| ! | AGGAGGCATGGTGAGGATTG+AGG | - | chr8.2:63846545-63846564 | None:intergenic | 55.0% |
| ! | AGGGGTGCAAACAAGACGGA+GGG | - | chr8.2:63846634-63846653 | None:intergenic | 55.0% |
| ! | CGCTAGGGGTGCAAACAAGA+CGG | - | chr8.2:63846638-63846657 | None:intergenic | 55.0% |
| ! | GGAGGCATGGTGAGGATTGA+GGG | - | chr8.2:63846544-63846563 | None:intergenic | 55.0% |
| ! | TAGGGGTGCAAACAAGACGG+AGG | - | chr8.2:63846635-63846654 | None:intergenic | 55.0% |
| ! | TTGGAGGACATCGGCGTTGA+CGG | - | chr8.2:63846601-63846620 | None:intergenic | 55.0% |
| AGCTTCAGCCGCCTGCATCT+TGG | + | chr8.2:63846817-63846836 | MS.gene019404:CDS | 60.0% | |
| CTTGTTTGCACCCCTAGCGC+CGG | + | chr8.2:63846639-63846658 | MS.gene019404:CDS | 60.0% | |
| GCTTCAGCCGCCTGCATCTT+GGG | + | chr8.2:63846818-63846837 | MS.gene019404:CDS | 60.0% | |
| GGTGCAAACAAGACGGAGGG+CGG | - | chr8.2:63846631-63846650 | None:intergenic | 60.0% | |
| GTGCAAACAAGACGGAGGGC+GGG | - | chr8.2:63846630-63846649 | None:intergenic | 60.0% | |
| TAGCGGCAATGGAGGAGGCA+TGG | - | chr8.2:63846557-63846576 | None:intergenic | 60.0% | |
| TGCAAACAAGACGGAGGGCG+GGG | - | chr8.2:63846629-63846648 | None:intergenic | 60.0% | |
| ! | GCAATGGAGGAGGCATGGTG+AGG | - | chr8.2:63846552-63846571 | None:intergenic | 60.0% |
| ! | GTGTCGACGTCGCGGAATTC+AGG | + | chr8.2:63846686-63846705 | MS.gene019404:CDS | 60.0% |
| !! | CGTCGCGGAATTCAGGTTGC+CGG | + | chr8.2:63846693-63846712 | MS.gene019404:CDS | 60.0% |
| !! | CTCGTTGAGTGTCGACGTCG+CGG | + | chr8.2:63846678-63846697 | MS.gene019404:CDS | 60.0% |
| !! | GGAATTCAGGTTGCCGGAGC+TGG | + | chr8.2:63846699-63846718 | MS.gene019404:CDS | 60.0% |
| GACGGAGGGCGGGGAGAAGT+TGG | - | chr8.2:63846620-63846639 | None:intergenic | 70.0% | |
| GGAGGGCGGGGAGAAGTTGG+AGG | - | chr8.2:63846617-63846636 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 63846375 | 63847920 | 63846375 | ID=MS.gene019404 |
| chr8.2 | mRNA | 63846375 | 63847920 | 63846375 | ID=MS.gene019404.t1;Parent=MS.gene019404 |
| chr8.2 | exon | 63846375 | 63846860 | 63846375 | ID=MS.gene019404.t1.exon1;Parent=MS.gene019404.t1 |
| chr8.2 | CDS | 63846375 | 63846860 | 63846375 | ID=cds.MS.gene019404.t1;Parent=MS.gene019404.t1 |
| chr8.2 | exon | 63847402 | 63847920 | 63847402 | ID=MS.gene019404.t1.exon2;Parent=MS.gene019404.t1 |
| chr8.2 | CDS | 63847402 | 63847920 | 63847402 | ID=cds.MS.gene019404.t1;Parent=MS.gene019404.t1 |
| Gene Sequence |
| Protein sequence |
