Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019405.t1 | KEH19019.1 | 92.8 | 333 | 24 | 0 | 1 | 333 | 1 | 333 | 1.40E-172 | 615.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019405.t1 | Q9LE33 | 53.4 | 320 | 147 | 1 | 13 | 332 | 3 | 320 | 1.9e-88 | 327.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019405.t1 | A0A072TNE4 | 92.8 | 333 | 24 | 0 | 1 | 333 | 1 | 333 | 1.0e-172 | 615.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019405 | MS.gene068262 | PPI |
| MS.gene019405 | MS.gene07262 | PPI |
| MS.gene019405 | MS.gene33394 | PPI |
| MS.gene24946 | MS.gene019405 | PPI |
| MS.gene068259 | MS.gene019405 | PPI |
| MS.gene062351 | MS.gene019405 | PPI |
| MS.gene019405 | MS.gene20834 | PPI |
| MS.gene20783 | MS.gene019405 | PPI |
| MS.gene068263 | MS.gene019405 | PPI |
| MS.gene74946 | MS.gene019405 | PPI |
| MS.gene33395 | MS.gene019405 | PPI |
| MS.gene76198 | MS.gene019405 | PPI |
| MS.gene065032 | MS.gene019405 | PPI |
| MS.gene030057 | MS.gene019405 | PPI |
| MS.gene029300 | MS.gene019405 | PPI |
| MS.gene24947 | MS.gene019405 | PPI |
| MS.gene017129 | MS.gene019405 | PPI |
| MS.gene019405 | MS.gene33396 | PPI |
| MS.gene038363 | MS.gene019405 | PPI |
| MS.gene24945 | MS.gene019405 | PPI |
| MS.gene019405 | MS.gene37513 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019405.t1 | MTR_8g033400 | 92.793 | 333 | 24 | 0 | 1 | 333 | 1 | 333 | 0.0 | 637 |
| MS.gene019405.t1 | MTR_8g033410 | 77.709 | 323 | 71 | 1 | 12 | 333 | 4 | 326 | 0.0 | 517 |
| MS.gene019405.t1 | MTR_8g033390 | 60.125 | 321 | 126 | 2 | 15 | 333 | 3 | 323 | 8.91e-139 | 396 |
| MS.gene019405.t1 | MTR_7g075830 | 53.898 | 295 | 114 | 5 | 51 | 327 | 19 | 309 | 2.35e-99 | 296 |
| MS.gene019405.t1 | MTR_4g012960 | 41.060 | 302 | 171 | 2 | 32 | 333 | 16 | 310 | 1.75e-82 | 253 |
| MS.gene019405.t1 | MTR_4g013100 | 40.328 | 305 | 172 | 3 | 32 | 333 | 17 | 314 | 1.07e-81 | 251 |
| MS.gene019405.t1 | MTR_4g013090 | 40.984 | 305 | 170 | 3 | 32 | 333 | 16 | 313 | 1.10e-81 | 251 |
| MS.gene019405.t1 | MTR_2g101840 | 43.234 | 303 | 167 | 3 | 32 | 333 | 16 | 314 | 1.01e-78 | 243 |
| MS.gene019405.t1 | MTR_4g013135 | 41.077 | 297 | 165 | 3 | 40 | 333 | 24 | 313 | 4.59e-67 | 213 |
| MS.gene019405.t1 | MTR_3g005970 | 27.170 | 265 | 159 | 6 | 76 | 315 | 107 | 362 | 8.64e-26 | 106 |
| MS.gene019405.t1 | MTR_1g112510 | 27.823 | 248 | 156 | 4 | 94 | 319 | 94 | 340 | 7.69e-23 | 98.2 |
| MS.gene019405.t1 | MTR_4g005880 | 27.132 | 258 | 175 | 6 | 63 | 312 | 127 | 379 | 3.77e-18 | 85.9 |
| MS.gene019405.t1 | MTR_6g007170 | 25.094 | 267 | 184 | 5 | 76 | 331 | 111 | 372 | 3.70e-17 | 82.0 |
| MS.gene019405.t1 | MTR_1g107480 | 25.984 | 254 | 175 | 6 | 67 | 312 | 98 | 346 | 4.10e-17 | 82.4 |
| MS.gene019405.t1 | MTR_6g007175 | 23.973 | 292 | 181 | 9 | 48 | 331 | 64 | 322 | 6.83e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019405.t1 | AT1G12550 | 53.438 | 320 | 147 | 1 | 13 | 332 | 3 | 320 | 6.83e-115 | 335 |
| MS.gene019405.t1 | AT2G45630 | 51.622 | 339 | 151 | 5 | 5 | 333 | 3 | 338 | 8.50e-115 | 336 |
| MS.gene019405.t1 | AT1G79870 | 45.290 | 276 | 144 | 2 | 61 | 333 | 42 | 313 | 3.72e-81 | 249 |
| MS.gene019405.t1 | AT1G79870 | 42.857 | 273 | 136 | 2 | 61 | 333 | 42 | 294 | 5.49e-72 | 225 |
| MS.gene019405.t1 | AT2G45630 | 46.108 | 167 | 78 | 4 | 5 | 162 | 3 | 166 | 1.05e-37 | 133 |
| MS.gene019405.t1 | AT1G72190 | 26.769 | 325 | 200 | 9 | 12 | 315 | 46 | 353 | 4.75e-29 | 115 |
| MS.gene019405.t1 | AT5G28310 | 36.082 | 194 | 71 | 4 | 142 | 333 | 91 | 233 | 5.03e-28 | 109 |
| MS.gene019405.t1 | AT1G68010 | 28.226 | 248 | 155 | 4 | 94 | 319 | 94 | 340 | 2.09e-21 | 94.4 |
| MS.gene019405.t1 | AT1G68010 | 28.571 | 259 | 161 | 5 | 94 | 329 | 94 | 351 | 2.70e-21 | 93.6 |
| MS.gene019405.t1 | AT1G68010 | 28.112 | 249 | 155 | 5 | 94 | 319 | 94 | 341 | 9.63e-20 | 89.4 |
| MS.gene019405.t1 | AT3G19480 | 28.685 | 251 | 170 | 6 | 67 | 311 | 89 | 336 | 4.66e-19 | 88.6 |
| MS.gene019405.t1 | AT5G14780 | 25.862 | 290 | 187 | 7 | 48 | 326 | 79 | 351 | 7.96e-19 | 86.7 |
| MS.gene019405.t1 | AT5G14780 | 25.862 | 290 | 187 | 7 | 48 | 326 | 67 | 339 | 8.53e-19 | 86.7 |
| MS.gene019405.t1 | AT4G34200 | 28.326 | 233 | 155 | 5 | 87 | 312 | 125 | 352 | 1.10e-18 | 87.4 |
| MS.gene019405.t1 | AT5G14780 | 25.862 | 290 | 187 | 7 | 48 | 326 | 93 | 365 | 1.24e-18 | 86.3 |
| MS.gene019405.t1 | AT1G17745 | 25.781 | 256 | 173 | 7 | 67 | 312 | 125 | 373 | 1.37e-18 | 87.0 |
| MS.gene019405.t1 | AT1G17745 | 24.373 | 279 | 175 | 7 | 67 | 312 | 125 | 400 | 5.13e-16 | 79.3 |
Find 83 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAAGATGTTGCTGATA+TGG | 0.254694 | 8.2:+63878449 | MS.gene019405:CDS |
| GGTCCATGAACTAATACTTT+TGG | 0.268733 | 8.2:-63878144 | None:intergenic |
| TTGGAGGATGAAGGAGAATT+CGG | 0.300468 | 8.2:-63878169 | None:intergenic |
| GTGTCAGCGTCGCGGAATTC+AGG | 0.317303 | 8.2:+63878404 | MS.gene019405:CDS |
| GGACTGGTGTTTCAGTTAAC+AGG | 0.337859 | 8.2:+63879668 | MS.gene019405:intron |
| CGTAACTTCCGAGTCTTTGA+TGG | 0.348499 | 8.2:+63880105 | MS.gene019405:CDS |
| TGATGTCAGCAGGAAAATTT+CGG | 0.354689 | 8.2:+63878488 | MS.gene019405:CDS |
| GAGAAGTAGGGTTTAAGATA+TGG | 0.358419 | 8.2:-63878212 | None:intergenic |
| TGCAGACAAGACGGAGGGCG+GGG | 0.358454 | 8.2:-63878344 | None:intergenic |
| GGTGGAATCATAGTGAATAT+TGG | 0.359465 | 8.2:+63879929 | MS.gene019405:CDS |
| TGGAGGATGAAGGAGAATTC+GGG | 0.360367 | 8.2:-63878168 | None:intergenic |
| TGGAAATTGTGAGAAGGATT+TGG | 0.375802 | 8.2:-63878192 | None:intergenic |
| TGGAGAGGAGGAAGAGAAGT+AGG | 0.386462 | 8.2:-63878225 | None:intergenic |
| CTCCCAAAAGTATTAGTTCA+TGG | 0.391355 | 8.2:+63878141 | MS.gene019405:CDS |
| AGGATTTGGTTGGAGGATGA+AGG | 0.397061 | 8.2:-63878178 | None:intergenic |
| AATAAGTACATTGTTGTTAG+TGG | 0.397440 | 8.2:-63879837 | None:intergenic |
| GACGGAGGGCGGGGAGAAGT+TGG | 0.399668 | 8.2:-63878335 | None:intergenic |
| GGAGATTGGAGGTGCTGGTT+TGG | 0.404758 | 8.2:+63880003 | MS.gene019405:CDS |
| GGAATTCAGGTTGCCGGAGC+TGG | 0.410518 | 8.2:+63878417 | MS.gene019405:CDS |
| TGTTTGATTGATGAGGAGAT+TGG | 0.411582 | 8.2:+63879989 | MS.gene019405:CDS |
| GGAGGCATGGTGAGGATTGA+GGG | 0.414126 | 8.2:-63878259 | None:intergenic |
| GTGCAGACAAGACGGAGGGC+GGG | 0.419214 | 8.2:-63878345 | None:intergenic |
| TGTTGACAATGTGTCTTGTT+TGG | 0.423468 | 8.2:-63879880 | None:intergenic |
| AGGAGCTCTCATTGATGAAA+AGG | 0.427719 | 8.2:+63879955 | MS.gene019405:CDS |
| GGTGCAGACAAGACGGAGGG+CGG | 0.429921 | 8.2:-63878346 | None:intergenic |
| AAAGATTGGAATTGTTGGTA+TGG | 0.433889 | 8.2:+63879694 | MS.gene019405:CDS |
| TGTGAGAAGGATTTGGTTGG+AGG | 0.436630 | 8.2:-63878185 | None:intergenic |
| GAGATCAATATGATCAGTTC+CGG | 0.442837 | 8.2:-63878376 | None:intergenic |
| AGGAGGCATGGTGAGGATTG+AGG | 0.447068 | 8.2:-63878260 | None:intergenic |
| CAAAGAAGTGATGTTAGCAT+TGG | 0.453189 | 8.2:+63879901 | MS.gene019405:CDS |
| CTTTGTTGATTGATGTCAGC+AGG | 0.466747 | 8.2:+63878478 | MS.gene019405:CDS |
| TAGAAAGAGTATGAAACTAA+TGG | 0.471056 | 8.2:-63879794 | None:intergenic |
| GATGAGGAGATTGGAGGTGC+TGG | 0.475466 | 8.2:+63879998 | MS.gene019405:CDS |
| TTGGAGAACATCAGCGTTGA+CGG | 0.477559 | 8.2:-63878316 | None:intergenic |
| ATATGATCAGTTCCGGCACT+AGG | 0.483707 | 8.2:-63878369 | None:intergenic |
| AAAGAAGTGATGTTAGCATT+GGG | 0.496466 | 8.2:+63879902 | MS.gene019405:CDS |
| GGAGAGGAGGAAGAGAAGTA+GGG | 0.498342 | 8.2:-63878224 | None:intergenic |
| GTGATGTTAGCATTGGGAAA+AGG | 0.499562 | 8.2:+63879908 | MS.gene019405:CDS |
| AACAATAGCGGCAATGGAGG+AGG | 0.501959 | 8.2:-63878277 | None:intergenic |
| CGTCGCGGAATTCAGGTTGC+CGG | 0.502409 | 8.2:+63878411 | MS.gene019405:CDS |
| ATTGCCGCTATTGTTTGTAC+CGG | 0.504574 | 8.2:+63878285 | MS.gene019405:CDS |
| AAGATTGGAATTGTTGGTAT+GGG | 0.505938 | 8.2:+63879695 | MS.gene019405:CDS |
| ATTGTTGGTATGGGAAGAAT+CGG | 0.507933 | 8.2:+63879704 | MS.gene019405:CDS |
| GAGGATTGAGGGATAAGAAT+TGG | 0.512540 | 8.2:-63878248 | None:intergenic |
| CTTGTCTGCACCCCTAGTGC+CGG | 0.515915 | 8.2:+63878357 | MS.gene019405:CDS |
| GCATAATATCATACAACTCT+CGG | 0.518640 | 8.2:+63879762 | MS.gene019405:CDS |
| GATAAGAATTGGTGGAGAGG+AGG | 0.525383 | 8.2:-63878237 | None:intergenic |
| TATGATCAGTTCCGGCACTA+GGG | 0.526310 | 8.2:-63878368 | None:intergenic |
| AATTGTGAGAAGGATTTGGT+TGG | 0.530046 | 8.2:-63878188 | None:intergenic |
| GATGGGTATTTGCCAACTTG+TGG | 0.534199 | 8.2:+63880123 | MS.gene019405:CDS |
| GGTACAAACAATAGCGGCAA+TGG | 0.536804 | 8.2:-63878283 | None:intergenic |
| GCCGCTATTGTTTGTACCGG+AGG | 0.539338 | 8.2:+63878288 | MS.gene019405:CDS |
| GTAACTTCCGAGTCTTTGAT+GGG | 0.542247 | 8.2:+63880106 | MS.gene019405:CDS |
| ATCATAGTGAATATTGGAAG+AGG | 0.545971 | 8.2:+63879935 | MS.gene019405:CDS |
| ATGTTAGCATTGGGAAAAGG+TGG | 0.551798 | 8.2:+63879911 | MS.gene019405:CDS |
| AATGTACTTATTCTCTGTTG+TGG | 0.552647 | 8.2:+63879848 | MS.gene019405:CDS |
| AGCGTTGACGGTGTAGCCTC+CGG | 0.553059 | 8.2:-63878304 | None:intergenic |
| GGAAAATTTCGGCTGCAGAT+CGG | 0.556541 | 8.2:+63878499 | MS.gene019405:CDS |
| AAGATATGGAAATTGTGAGA+AGG | 0.559376 | 8.2:-63878198 | None:intergenic |
| GACAAGTTCAGAATTCAACT+TGG | 0.563111 | 8.2:+63878532 | MS.gene019405:CDS |
| AGTGGCAAGCTCTAAGACAC+TGG | 0.563828 | 8.2:-63879819 | None:intergenic |
| CGACAGCTGCATGTGGTGAA+AGG | 0.572184 | 8.2:-63880084 | None:intergenic |
| TTGATTGATGAGGAGATTGG+AGG | 0.574084 | 8.2:+63879992 | MS.gene019405:CDS |
| GATTGAGGGATAAGAATTGG+TGG | 0.574137 | 8.2:-63878245 | None:intergenic |
| AATTCCGCGACGCTGACACT+CGG | 0.574720 | 8.2:-63878400 | None:intergenic |
| AGGGATAAGAATTGGTGGAG+AGG | 0.577295 | 8.2:-63878240 | None:intergenic |
| GTTGAAGTGTTTGATTGATG+AGG | 0.582035 | 8.2:+63879982 | MS.gene019405:CDS |
| CACTAGGGGTGCAGACAAGA+CGG | 0.589853 | 8.2:-63878353 | None:intergenic |
| ATGATCAGTTCCGGCACTAG+GGG | 0.595716 | 8.2:-63878367 | None:intergenic |
| TCCAATGAAAAGAACTCTTG+AGG | 0.600653 | 8.2:-63880052 | None:intergenic |
| TAGCGGCAATGGAGGAGGCA+TGG | 0.602465 | 8.2:-63878272 | None:intergenic |
| ACAAACAATAGCGGCAATGG+AGG | 0.607420 | 8.2:-63878280 | None:intergenic |
| AAGAACTCTTGAGGAACATG+AGG | 0.608334 | 8.2:-63880043 | None:intergenic |
| GCAAATACCCATCAAAGACT+CGG | 0.630292 | 8.2:-63880113 | None:intergenic |
| TTGCAGACCTTAGAACCAAG+TGG | 0.630404 | 8.2:-63878561 | None:intergenic |
| AGGGGTGCAGACAAGACGGA+GGG | 0.638265 | 8.2:-63878349 | None:intergenic |
| CTCTCCGAGTGTCAGCGTCG+CGG | 0.655545 | 8.2:+63878396 | MS.gene019405:CDS |
| GCAATGGAGGAGGCATGGTG+AGG | 0.666359 | 8.2:-63878267 | None:intergenic |
| TCGGCTCAGAAGTCGCAAAG+AGG | 0.673470 | 8.2:+63879723 | MS.gene019405:CDS |
| GAAGTTACGACAGCTGCATG+TGG | 0.679099 | 8.2:-63880091 | None:intergenic |
| TAGGGGTGCAGACAAGACGG+AGG | 0.688902 | 8.2:-63878350 | None:intergenic |
| GCCTCCGGTACAAACAATAG+CGG | 0.712812 | 8.2:-63878289 | None:intergenic |
| AGGATGAAGGAGAATTCGGG+AGG | 0.716547 | 8.2:-63878165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACTTTATATAATAAACA+TGG | + | chr8.2:63879646-63879665 | MS.gene019405:intron | 10.0% |
| !! | TAACTTTATATAATAAACAT+GGG | + | chr8.2:63879647-63879666 | MS.gene019405:intron | 10.0% |
| !!! | AAACAATAGTTTTTTTTTAG+TGG | - | chr8.2:63879431-63879450 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTTTTTACCAAG+AGG | + | chr8.2:63879165-63879184 | MS.gene019405:intron | 15.0% |
| !!! | CAAATTAAATAATTTTGACT+CGG | + | chr8.2:63879250-63879269 | MS.gene019405:intron | 15.0% |
| !!! | GATATGAATTTCTTTTTTAA+AGG | - | chr8.2:63879225-63879244 | None:intergenic | 15.0% |
| !!! | TTTTGTGGATTAAAAAAATA+TGG | + | chr8.2:63879065-63879084 | MS.gene019405:intron | 15.0% |
| !! | CATAATATGTCTGTTTAATA+TGG | + | chr8.2:63878615-63878634 | MS.gene019405:intron | 20.0% |
| !! | TATGGTTAAGTTTATGAAAT+TGG | + | chr8.2:63879083-63879102 | MS.gene019405:intron | 20.0% |
| !!! | ATCCAAACACTTAATTTTTT+TGG | - | chr8.2:63879132-63879151 | None:intergenic | 20.0% |
| !!! | GAGACAAACATTTTATAAAA+AGG | - | chr8.2:63878834-63878853 | None:intergenic | 20.0% |
| !!! | GTTCTGTTAAATTTCTTTTT+TGG | - | chr8.2:63879524-63879543 | None:intergenic | 20.0% |
| !!! | TAAATTTCTTTTTTGGAACA+AGG | - | chr8.2:63879517-63879536 | None:intergenic | 20.0% |
| !!! | TCCAAACACTTAATTTTTTT+GGG | - | chr8.2:63879131-63879150 | None:intergenic | 20.0% |
| ! | AAACTTAACTTATATCCTCT+TGG | - | chr8.2:63879183-63879202 | None:intergenic | 25.0% |
| ! | AATTAAGTGTTTGGATTCAA+AGG | + | chr8.2:63879136-63879155 | MS.gene019405:intron | 25.0% |
| ! | ACCCAAAAAAATTAAGTGTT+TGG | + | chr8.2:63879127-63879146 | MS.gene019405:intron | 25.0% |
| ! | ATTAAGTGTTTGGATTCAAA+GGG | + | chr8.2:63879137-63879156 | MS.gene019405:intron | 25.0% |
| ! | GTTATAAACTCTTTGAATAC+TGG | - | chr8.2:63879631-63879650 | None:intergenic | 25.0% |
| ! | TTATATAATAAACATGGGAC+TGG | + | chr8.2:63879652-63879671 | MS.gene019405:intron | 25.0% |
| !! | AATAAGTACATTGTTGTTAG+TGG | - | chr8.2:63879840-63879859 | None:intergenic | 25.0% |
| !! | TAAGCATTGCATAAAACATT+CGG | + | chr8.2:63878915-63878934 | MS.gene019405:intron | 25.0% |
| !! | TAGAAAGAGTATGAAACTAA+TGG | - | chr8.2:63879797-63879816 | None:intergenic | 25.0% |
| !! | TGGGAGATTATTATTTTCTT+GGG | - | chr8.2:63878127-63878146 | None:intergenic | 25.0% |
| !! | TTGGGAGATTATTATTTTCT+TGG | - | chr8.2:63878128-63878147 | None:intergenic | 25.0% |
| !!! | ATGATAGTGGTAAATTGTTA+AGG | - | chr8.2:63879559-63879578 | None:intergenic | 25.0% |
| !!! | CAATAGTTTTTTTTTAGTGG+TGG | - | chr8.2:63879428-63879447 | None:intergenic | 25.0% |
| AAAGAAGTGATGTTAGCATT+GGG | + | chr8.2:63879902-63879921 | MS.gene019405:CDS | 30.0% | |
| AAAGATTGGAATTGTTGGTA+TGG | + | chr8.2:63879694-63879713 | MS.gene019405:CDS | 30.0% | |
| AAGATATGGAAATTGTGAGA+AGG | - | chr8.2:63878201-63878220 | None:intergenic | 30.0% | |
| AAGATTGGAATTGTTGGTAT+GGG | + | chr8.2:63879695-63879714 | MS.gene019405:CDS | 30.0% | |
| AATGTACTTATTCTCTGTTG+TGG | + | chr8.2:63879848-63879867 | MS.gene019405:CDS | 30.0% | |
| ATCATAGTGAATATTGGAAG+AGG | + | chr8.2:63879935-63879954 | MS.gene019405:CDS | 30.0% | |
| CAGTTAACAGGAAAAAAGAT+TGG | + | chr8.2:63879680-63879699 | MS.gene019405:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr8.2:63879383-63879402 | MS.gene019405:intron | 30.0% | |
| GCATAAAAGTCTGTTTCATA+TGG | + | chr8.2:63878649-63878668 | MS.gene019405:intron | 30.0% | |
| GCATAATATCATACAACTCT+CGG | + | chr8.2:63879762-63879781 | MS.gene019405:CDS | 30.0% | |
| GGAAAAAAGATTGGAATTGT+TGG | + | chr8.2:63879689-63879708 | MS.gene019405:CDS | 30.0% | |
| TGCATAATATATGCAAGGTT+CGG | + | chr8.2:63879388-63879407 | MS.gene019405:intron | 30.0% | |
| ! | AGATCCTTTAAGCAATGTTT+TGG | + | chr8.2:63879035-63879054 | MS.gene019405:intron | 30.0% |
| ! | GATCCTTTAAGCAATGTTTT+GGG | + | chr8.2:63879036-63879055 | MS.gene019405:intron | 30.0% |
| ! | GTCCATGAACTAATACTTTT+GGG | - | chr8.2:63878146-63878165 | None:intergenic | 30.0% |
| ! | TCAAATTTTGTTCCACAAGT+TGG | - | chr8.2:63880138-63880157 | None:intergenic | 30.0% |
| !!! | AGTTTTTTTTTAGTGGTGGT+CGG | - | chr8.2:63879424-63879443 | None:intergenic | 30.0% |
| AGAAAAAAGATTTCCAGCTC+CGG | - | chr8.2:63878433-63878452 | None:intergenic | 35.0% | |
| ATGTTCTCATGTCATGATAG+TGG | - | chr8.2:63879572-63879591 | None:intergenic | 35.0% | |
| ATTGTTGGTATGGGAAGAAT+CGG | + | chr8.2:63879704-63879723 | MS.gene019405:CDS | 35.0% | |
| CAAAGAAGTGATGTTAGCAT+TGG | + | chr8.2:63879901-63879920 | MS.gene019405:CDS | 35.0% | |
| CATAATATATGCAAGGTTCG+GGG | + | chr8.2:63879390-63879409 | MS.gene019405:intron | 35.0% | |
| GAACCCAAAACATTGCTTAA+AGG | - | chr8.2:63879042-63879061 | None:intergenic | 35.0% | |
| GACAAGTTCAGAATTCAACT+TGG | + | chr8.2:63878532-63878551 | MS.gene019405:CDS | 35.0% | |
| GAGATCAATATGATCAGTTC+CGG | - | chr8.2:63878379-63878398 | None:intergenic | 35.0% | |
| GCATAATATATGCAAGGTTC+GGG | + | chr8.2:63879389-63879408 | MS.gene019405:intron | 35.0% | |
| GGTGGAATCATAGTGAATAT+TGG | + | chr8.2:63879929-63879948 | MS.gene019405:CDS | 35.0% | |
| TCCAATGAAAAGAACTCTTG+AGG | - | chr8.2:63880055-63880074 | None:intergenic | 35.0% | |
| TGATGTCAGCAGGAAAATTT+CGG | + | chr8.2:63878488-63878507 | MS.gene019405:CDS | 35.0% | |
| TGGAAATTGTGAGAAGGATT+TGG | - | chr8.2:63878195-63878214 | None:intergenic | 35.0% | |
| TGTTTGATTGATGAGGAGAT+TGG | + | chr8.2:63879989-63880008 | MS.gene019405:CDS | 35.0% | |
| TTGTCTCACTTGATACAGAT+CGG | + | chr8.2:63878847-63878866 | MS.gene019405:intron | 35.0% | |
| ! | AATTGTGAGAAGGATTTGGT+TGG | - | chr8.2:63878191-63878210 | None:intergenic | 35.0% |
| ! | ATGTCTCTTTTAAACGATGC+AGG | + | chr8.2:63878689-63878708 | MS.gene019405:intron | 35.0% |
| ! | GAGAAGTAGGGTTTAAGATA+TGG | - | chr8.2:63878215-63878234 | None:intergenic | 35.0% |
| ! | GGTCCATGAACTAATACTTT+TGG | - | chr8.2:63878147-63878166 | None:intergenic | 35.0% |
| ! | GTTGAAGTGTTTGATTGATG+AGG | + | chr8.2:63879982-63880001 | MS.gene019405:CDS | 35.0% |
| ! | TCAACTTGGAATTTTCCACT+TGG | + | chr8.2:63878546-63878565 | MS.gene019405:CDS | 35.0% |
| ! | TCCTCAAGAGTTCTTTTCAT+TGG | + | chr8.2:63880051-63880070 | MS.gene019405:CDS | 35.0% |
| ! | TGTTGACAATGTGTCTTGTT+TGG | - | chr8.2:63879883-63879902 | None:intergenic | 35.0% |
| ! | TTCTGAAGATGTTGCTGATA+TGG | + | chr8.2:63878449-63878468 | MS.gene019405:CDS | 35.0% |
| !! | CTCCCAAAAGTATTAGTTCA+TGG | + | chr8.2:63878141-63878160 | MS.gene019405:CDS | 35.0% |
| !!! | GAATTTTCCACTTGGTTCTA+AGG | + | chr8.2:63878554-63878573 | MS.gene019405:CDS | 35.0% |
| !!! | GTTTTTTTTTAGTGGTGGTC+GGG | - | chr8.2:63879423-63879442 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTAGTGGTGGTCG+GGG | - | chr8.2:63879422-63879441 | None:intergenic | 35.0% |
| AAGAACTCTTGAGGAACATG+AGG | - | chr8.2:63880046-63880065 | None:intergenic | 40.0% | |
| AGGAGCTCTCATTGATGAAA+AGG | + | chr8.2:63879955-63879974 | MS.gene019405:CDS | 40.0% | |
| ATACTGGTAGCTAGCATGAA+TGG | - | chr8.2:63879615-63879634 | None:intergenic | 40.0% | |
| ATTGCCGCTATTGTTTGTAC+CGG | + | chr8.2:63878285-63878304 | MS.gene019405:CDS | 40.0% | |
| CAGGTGGTACACAAGATATT+CGG | + | chr8.2:63878708-63878727 | MS.gene019405:intron | 40.0% | |
| GAGGATTGAGGGATAAGAAT+TGG | - | chr8.2:63878251-63878270 | None:intergenic | 40.0% | |
| GATTGAGGGATAAGAATTGG+TGG | - | chr8.2:63878248-63878267 | None:intergenic | 40.0% | |
| GCAAATACCCATCAAAGACT+CGG | - | chr8.2:63880116-63880135 | None:intergenic | 40.0% | |
| GTAACTTCCGAGTCTTTGAT+GGG | + | chr8.2:63880106-63880125 | MS.gene019405:CDS | 40.0% | |
| TTGATTGATGAGGAGATTGG+AGG | + | chr8.2:63879992-63880011 | MS.gene019405:CDS | 40.0% | |
| TTGGAAAATCACACCATGCA+TGG | + | chr8.2:63879102-63879121 | MS.gene019405:intron | 40.0% | |
| TTGGAGGATGAAGGAGAATT+CGG | - | chr8.2:63878172-63878191 | None:intergenic | 40.0% | |
| ! | ATGTTAGCATTGGGAAAAGG+TGG | + | chr8.2:63879911-63879930 | MS.gene019405:CDS | 40.0% |
| ! | CTGACTTGCATTAGAAGTCT+TGG | - | chr8.2:63879466-63879485 | None:intergenic | 40.0% |
| ! | CTTTGTTGATTGATGTCAGC+AGG | + | chr8.2:63878478-63878497 | MS.gene019405:CDS | 40.0% |
| ! | GTGATGTTAGCATTGGGAAA+AGG | + | chr8.2:63879908-63879927 | MS.gene019405:CDS | 40.0% |
| ! | TCTCTTTTAAACGATGCAGG+TGG | + | chr8.2:63878692-63878711 | MS.gene019405:intron | 40.0% |
| !!! | TGTTTTGGGTTCGAGTTTTG+TGG | + | chr8.2:63879050-63879069 | MS.gene019405:intron | 40.0% |
| !!! | TTTTTTTGGGTAGCCATGCA+TGG | - | chr8.2:63879118-63879137 | None:intergenic | 40.0% |
| ACAAACAATAGCGGCAATGG+AGG | - | chr8.2:63878283-63878302 | None:intergenic | 45.0% | |
| AGGGATAAGAATTGGTGGAG+AGG | - | chr8.2:63878243-63878262 | None:intergenic | 45.0% | |
| ATATGATCAGTTCCGGCACT+AGG | - | chr8.2:63878372-63878391 | None:intergenic | 45.0% | |
| ATGAGCTTAGCTCAGTTGGT+AGG | + | chr8.2:63879361-63879380 | MS.gene019405:intron | 45.0% | |
| CGTAACTTCCGAGTCTTTGA+TGG | + | chr8.2:63880105-63880124 | MS.gene019405:CDS | 45.0% | |
| GATAAGAATTGGTGGAGAGG+AGG | - | chr8.2:63878240-63878259 | None:intergenic | 45.0% | |
| GATGGGTATTTGCCAACTTG+TGG | + | chr8.2:63880123-63880142 | MS.gene019405:CDS | 45.0% | |
| GGAAAATTTCGGCTGCAGAT+CGG | + | chr8.2:63878499-63878518 | MS.gene019405:CDS | 45.0% | |
| GGTACAAACAATAGCGGCAA+TGG | - | chr8.2:63878286-63878305 | None:intergenic | 45.0% | |
| TATGATCAGTTCCGGCACTA+GGG | - | chr8.2:63878371-63878390 | None:intergenic | 45.0% | |
| TGGAGGATGAAGGAGAATTC+GGG | - | chr8.2:63878171-63878190 | None:intergenic | 45.0% | |
| TTGCAGACCTTAGAACCAAG+TGG | - | chr8.2:63878564-63878583 | None:intergenic | 45.0% | |
| ! | AGGATTTGGTTGGAGGATGA+AGG | - | chr8.2:63878181-63878200 | None:intergenic | 45.0% |
| ! | GGACTGGTGTTTCAGTTAAC+AGG | + | chr8.2:63879668-63879687 | MS.gene019405:intron | 45.0% |
| ! | TGTGAGAAGGATTTGGTTGG+AGG | - | chr8.2:63878188-63878207 | None:intergenic | 45.0% |
| ! | TTGGAGAACATCAGCGTTGA+CGG | - | chr8.2:63878319-63878338 | None:intergenic | 45.0% |
| !! | ATTGTAAATATAAAAAAATT+TGG | - | chr8.2:63878750-63878769 | None:intergenic | 5.0% |
| AACAATAGCGGCAATGGAGG+AGG | - | chr8.2:63878280-63878299 | None:intergenic | 50.0% | |
| AGGATGAAGGAGAATTCGGG+AGG | - | chr8.2:63878168-63878187 | None:intergenic | 50.0% | |
| ATGATCAGTTCCGGCACTAG+GGG | - | chr8.2:63878370-63878389 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCATG+AGG | - | chr8.2:63879360-63879379 | None:intergenic | 50.0% | |
| CCTCATGAGCTTAGCTCAGT+TGG | + | chr8.2:63879357-63879376 | MS.gene019405:intron | 50.0% | |
| GAAGTTACGACAGCTGCATG+TGG | - | chr8.2:63880094-63880113 | None:intergenic | 50.0% | |
| GCCTCCGGTACAAACAATAG+CGG | - | chr8.2:63878292-63878311 | None:intergenic | 50.0% | |
| GGAGAGGAGGAAGAGAAGTA+GGG | - | chr8.2:63878227-63878246 | None:intergenic | 50.0% | |
| TGGAGAGGAGGAAGAGAAGT+AGG | - | chr8.2:63878228-63878247 | None:intergenic | 50.0% | |
| !! | AGTGGCAAGCTCTAAGACAC+TGG | - | chr8.2:63879822-63879841 | None:intergenic | 50.0% |
| AATTCCGCGACGCTGACACT+CGG | - | chr8.2:63878403-63878422 | None:intergenic | 55.0% | |
| CGACAGCTGCATGTGGTGAA+AGG | - | chr8.2:63880087-63880106 | None:intergenic | 55.0% | |
| GCCGCTATTGTTTGTACCGG+AGG | + | chr8.2:63878288-63878307 | MS.gene019405:CDS | 55.0% | |
| TCGGCTCAGAAGTCGCAAAG+AGG | + | chr8.2:63879723-63879742 | MS.gene019405:CDS | 55.0% | |
| ! | AGGAGGCATGGTGAGGATTG+AGG | - | chr8.2:63878263-63878282 | None:intergenic | 55.0% |
| ! | CACTAGGGGTGCAGACAAGA+CGG | - | chr8.2:63878356-63878375 | None:intergenic | 55.0% |
| ! | GATGAGGAGATTGGAGGTGC+TGG | + | chr8.2:63879998-63880017 | MS.gene019405:CDS | 55.0% |
| ! | GGAGGCATGGTGAGGATTGA+GGG | - | chr8.2:63878262-63878281 | None:intergenic | 55.0% |
| !! | CGGCTGCAGATCGGTTTTTG+AGG | + | chr8.2:63878508-63878527 | MS.gene019405:CDS | 55.0% |
| !! | GGAGATTGGAGGTGCTGGTT+TGG | + | chr8.2:63880003-63880022 | MS.gene019405:CDS | 55.0% |
| CTTGTCTGCACCCCTAGTGC+CGG | + | chr8.2:63878357-63878376 | MS.gene019405:CDS | 60.0% | |
| GTGTCAGCGTCGCGGAATTC+AGG | + | chr8.2:63878404-63878423 | MS.gene019405:CDS | 60.0% | |
| TAGCGGCAATGGAGGAGGCA+TGG | - | chr8.2:63878275-63878294 | None:intergenic | 60.0% | |
| ! | AGGGGTGCAGACAAGACGGA+GGG | - | chr8.2:63878352-63878371 | None:intergenic | 60.0% |
| ! | GCAATGGAGGAGGCATGGTG+AGG | - | chr8.2:63878270-63878289 | None:intergenic | 60.0% |
| ! | TAGGGGTGCAGACAAGACGG+AGG | - | chr8.2:63878353-63878372 | None:intergenic | 60.0% |
| !! | AGCGTTGACGGTGTAGCCTC+CGG | - | chr8.2:63878307-63878326 | None:intergenic | 60.0% |
| !! | CGTCGCGGAATTCAGGTTGC+CGG | + | chr8.2:63878411-63878430 | MS.gene019405:CDS | 60.0% |
| !! | GGAATTCAGGTTGCCGGAGC+TGG | + | chr8.2:63878417-63878436 | MS.gene019405:CDS | 60.0% |
| CTCTCCGAGTGTCAGCGTCG+CGG | + | chr8.2:63878396-63878415 | MS.gene019405:CDS | 65.0% | |
| GGTGCAGACAAGACGGAGGG+CGG | - | chr8.2:63878349-63878368 | None:intergenic | 65.0% | |
| GTGCAGACAAGACGGAGGGC+GGG | - | chr8.2:63878348-63878367 | None:intergenic | 65.0% | |
| TGCAGACAAGACGGAGGGCG+GGG | - | chr8.2:63878347-63878366 | None:intergenic | 65.0% | |
| GACGGAGGGCGGGGAGAAGT+TGG | - | chr8.2:63878338-63878357 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 63878093 | 63880201 | 63878093 | ID=MS.gene019405 |
| chr8.2 | mRNA | 63878093 | 63880201 | 63878093 | ID=MS.gene019405.t1;Parent=MS.gene019405 |
| chr8.2 | exon | 63878093 | 63878575 | 63878093 | ID=MS.gene019405.t1.exon1;Parent=MS.gene019405.t1 |
| chr8.2 | CDS | 63878093 | 63878575 | 63878093 | ID=cds.MS.gene019405.t1;Parent=MS.gene019405.t1 |
| chr8.2 | exon | 63879683 | 63880201 | 63879683 | ID=MS.gene019405.t1.exon2;Parent=MS.gene019405.t1 |
| chr8.2 | CDS | 63879683 | 63880201 | 63879683 | ID=cds.MS.gene019405.t1;Parent=MS.gene019405.t1 |
| Gene Sequence |
| Protein sequence |
