AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019406

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019406.t1 MTR_8g033390 96.626 326 11 0 1 326 1 326 0.0 649
MS.gene019406.t1 MTR_8g033400 58.879 321 130 2 3 323 15 333 3.45e-135 387
MS.gene019406.t1 MTR_8g033410 58.307 319 132 1 5 323 9 326 1.72e-134 385
MS.gene019406.t1 MTR_7g075830 49.511 307 132 6 36 324 15 316 2.66e-96 288
MS.gene019406.t1 MTR_4g012960 42.208 308 161 4 20 323 16 310 8.88e-89 268
MS.gene019406.t1 MTR_4g013090 43.408 311 156 5 20 323 16 313 1.63e-88 268
MS.gene019406.t1 MTR_4g013100 43.182 308 161 4 20 323 17 314 1.85e-87 265
MS.gene019406.t1 MTR_2g101840 45.307 309 158 5 18 323 14 314 4.69e-80 246
MS.gene019406.t1 MTR_4g013135 43.262 282 155 2 42 323 37 313 1.65e-71 224
MS.gene019406.t1 MTR_3g005970 27.372 274 174 5 65 318 107 375 1.37e-27 111
MS.gene019406.t1 MTR_4g005880 29.658 263 170 5 76 326 152 411 1.51e-25 107
MS.gene019406.t1 MTR_1g107480 28.517 263 173 5 76 326 119 378 1.48e-23 101
MS.gene019406.t1 MTR_1g112510 27.626 257 156 7 83 312 94 347 2.73e-21 93.6
MS.gene019406.t1 MTR_6g007170 26.641 259 175 4 65 313 111 364 4.44e-21 93.2
MS.gene019406.t1 MTR_6g007175 25.197 254 166 4 65 313 80 314 1.37e-16 79.7
MS.gene019406.t1 MTR_7g078990 25.328 229 156 4 98 315 97 321 1.82e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019406.t1 AT2G45630 50.000 328 149 5 3 323 19 338 1.06e-109 323
MS.gene019406.t1 AT1G12550 50.309 324 148 4 6 324 7 322 2.96e-105 311
MS.gene019406.t1 AT1G79870 43.038 316 172 4 8 323 6 313 2.93e-81 249
MS.gene019406.t1 AT1G79870 39.557 316 164 4 8 323 6 294 7.29e-71 222
MS.gene019406.t1 AT2G45630 42.949 156 75 4 3 152 19 166 1.14e-31 117
MS.gene019406.t1 AT1G72190 26.948 308 198 7 16 306 57 354 8.45e-28 111
MS.gene019406.t1 AT1G17745 28.521 284 187 7 56 326 125 405 1.17e-26 110
MS.gene019406.t1 AT4G34200 30.682 264 166 6 76 326 125 384 5.68e-26 108
MS.gene019406.t1 AT5G28310 35.165 182 65 4 144 323 103 233 6.18e-25 100
MS.gene019406.t1 AT3G19480 31.395 258 158 7 76 319 110 362 1.14e-23 102
MS.gene019406.t1 AT1G17745 26.688 311 185 8 56 326 125 432 1.93e-23 101
MS.gene019406.t1 AT5G14780 26.639 244 162 5 81 313 111 348 3.27e-22 96.3
MS.gene019406.t1 AT5G14780 26.639 244 162 5 81 313 99 336 4.00e-22 95.9
MS.gene019406.t1 AT5G14780 26.639 244 162 5 81 313 125 362 7.29e-22 95.5
MS.gene019406.t1 AT1G68010 27.519 258 166 3 83 319 94 351 5.29e-20 89.7
MS.gene019406.t1 AT1G68010 28.627 255 156 6 83 312 94 347 5.89e-20 90.1
MS.gene019406.t1 AT1G68010 28.516 256 156 7 83 312 94 348 2.67e-18 85.1
MS.gene019406.t1 AT1G01510 25.751 233 154 5 98 315 105 333 2.67e-13 70.9

Find 84 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGATAGGCCTGAGGGTTT+GGG 0.244134 8.2:-63889312 None:intergenic
GGCCTGAGGGTTTGGGGTTT+AGG 0.249977 8.2:-63889305 None:intergenic
CTCCAAGGATGTGGCTGATA+TGG 0.267423 8.2:+63889539 MS.gene019406:CDS
CTTCCAAAAGTACTTGTTCT+TGG 0.268392 8.2:+63889228 MS.gene019406:CDS
CAGTGATAGGCCTGAGGGTT+TGG 0.272695 8.2:-63889313 None:intergenic
GATCCTTGGGATTTCCCTCT+TGG 0.293816 8.2:+63889639 MS.gene019406:CDS
ATATGCGGCGCTACAGAATA+TGG 0.320838 8.2:-63889382 None:intergenic
GGCGGGAACGTTCTGATCCT+TGG 0.323599 8.2:+63889625 MS.gene019406:CDS
ATGCCGTCGTCGCGGAATTC+AGG 0.333564 8.2:+63889494 MS.gene019406:CDS
CGAGTTGGAATTGTTGGATT+AGG 0.338569 8.2:+63890148 MS.gene019406:CDS
AGTAAACAACGATGTCCTTT+TGG 0.353511 8.2:+63890348 MS.gene019406:CDS
GGCAAGCGAGTTGGAATTGT+TGG 0.356871 8.2:+63890142 MS.gene019406:CDS
ACAATTGATCAAGTGTTTGA+TGG 0.359013 8.2:+63890429 MS.gene019406:CDS
GGAATTCAGGTTGCCGGTGC+TGG 0.372744 8.2:+63889507 MS.gene019406:CDS
AGAAATTGCTGGTGCTGGTT+TGG 0.382247 8.2:+63890456 MS.gene019406:CDS
GGACCAAGAACAAGTACTTT+TGG 0.389162 8.2:-63889231 None:intergenic
GAAGGGTTTATTGTAAATGT+TGG 0.390642 8.2:+63890382 MS.gene019406:CDS
ATTGTTGGATTAGGAAGTAT+TGG 0.399827 8.2:+63890157 MS.gene019406:CDS
TTGTTGATGGATTGTGGTTG+TGG 0.413973 8.2:-63889353 None:intergenic
GCGGGAACGTTCTGATCCTT+GGG 0.415107 8.2:+63889626 MS.gene019406:CDS
GGATTTCCCTCTTGGATACA+AGG 0.415287 8.2:+63889647 MS.gene019406:CDS
GGATGAATTGTTGCAGTGAT+AGG 0.422185 8.2:-63889326 None:intergenic
AATATGGCGGGAATTGTTGA+TGG 0.425691 8.2:-63889366 None:intergenic
ATGGATTGTGGTTGTGGGAA+AGG 0.445567 8.2:-63889347 None:intergenic
TCAATAACATTGGAATAGAA+AGG 0.449303 8.2:-63890262 None:intergenic
CGGGAATTGTTGATGGATTG+TGG 0.457939 8.2:-63889359 None:intergenic
TTTATTGTAAATGTTGGAAG+AGG 0.472073 8.2:+63890388 MS.gene019406:CDS
TGCCATATCAGCCACATCCT+TGG 0.473320 8.2:-63889541 None:intergenic
CGTCGCGGAATTCAGGTTGC+CGG 0.475850 8.2:+63889501 MS.gene019406:CDS
TGTTGATGGATTGTGGTTGT+GGG 0.478601 8.2:-63889352 None:intergenic
CAAGGCTGAGCGAGGGAAGA+AGG 0.482908 8.2:-63889428 None:intergenic
TGTTTACTATGTGTCGTGTT+CGG 0.483207 8.2:-63890333 None:intergenic
AACATCACTGGACTAATTAG+TGG 0.487118 8.2:-63890631 None:intergenic
ACTAATTAGTCCAGTGATGT+TGG 0.495572 8.2:+63890633 MS.gene019406:CDS
ATTGTAAATGTTGGAAGAGG+TGG 0.499918 8.2:+63890391 MS.gene019406:CDS
TGTCATGAGGAAGGTGACTA+TGG 0.499990 8.2:+63889581 MS.gene019406:CDS
GTTGAGAACGTCGGTAGTGA+TGG 0.509803 8.2:-63889406 None:intergenic
GTGATAGGCCTGAGGGTTTG+GGG 0.518270 8.2:-63889311 None:intergenic
TTCCTAAACCCCAAACCCTC+AGG 0.518357 8.2:+63889303 MS.gene019406:CDS
GCTCTTTGCAATGGATAATG+TGG 0.520923 8.2:+63890513 MS.gene019406:CDS
CTTGTTGTCACCTCCAGTGT+TGG 0.525756 8.2:+63889447 MS.gene019406:CDS
AGTTACTCAACCAACATCAC+TGG 0.541861 8.2:-63890643 None:intergenic
TAGTTATCAGGCAAGCGAGT+TGG 0.543767 8.2:+63890133 MS.gene019406:intron
CAATAACATTGGAATAGAAA+GGG 0.548282 8.2:-63890261 None:intergenic
TTGATCAAGTGTTTGATGGA+AGG 0.551467 8.2:+63890433 MS.gene019406:CDS
GAAGGAGAAATTGCTGGTGC+TGG 0.558068 8.2:+63890451 MS.gene019406:CDS
AGTTTGTGTGAACTTGTGGC+AGG 0.560200 8.2:+63890580 MS.gene019406:CDS
ATTCAGGTTGCCGGTGCTGG+AGG 0.565610 8.2:+63889510 MS.gene019406:CDS
GTGAGAGTAGAGTTGTTCGA+AGG 0.566601 8.2:-63889271 None:intergenic
AACTTCTAGCGACGCACTTG+TGG 0.568567 8.2:+63890291 MS.gene019406:CDS
TCGATATGTGAGGACGCGGC+GGG 0.575178 8.2:+63889608 MS.gene019406:CDS
CGCGACGACGGCATTCATGA+AGG 0.575319 8.2:-63889485 None:intergenic
TGATGAAAAGCTCTTTGCAA+TGG 0.579661 8.2:+63890504 MS.gene019406:CDS
ACAGTGAAAGCTGCAGAATG+TGG 0.584178 8.2:-63890544 None:intergenic
TTGATGGAAGGAGAAATTGC+TGG 0.584407 8.2:+63890445 MS.gene019406:CDS
AGTTGCAAGATCAATAACAT+TGG 0.588695 8.2:-63890272 None:intergenic
AATGTGATCAGTTCCAACAC+TGG 0.588992 8.2:-63889460 None:intergenic
CAACCTGAATTCCGCGACGA+CGG 0.589863 8.2:-63889497 None:intergenic
TGGATTAGGAAGTATTGGCA+TGG 0.593545 8.2:+63890162 MS.gene019406:CDS
CGGATCGATATGTGAGGACG+CGG 0.601075 8.2:+63889604 MS.gene019406:CDS
GGAGAAAACTCCTCCAGCAC+CGG 0.609672 8.2:-63889520 None:intergenic
TGTTGCAGTGATAGGCCTGA+GGG 0.610418 8.2:-63889318 None:intergenic
GGTGACAACAAGGCTGAGCG+AGG 0.616021 8.2:-63889436 None:intergenic
AATGAGTTTGTGTGAACTTG+TGG 0.617149 8.2:+63890576 MS.gene019406:CDS
AAGGTTGAGAAGCATGTCGG+TGG 0.621316 8.2:-63889252 None:intergenic
CGTTGCTGATTGCTGTCATG+AGG 0.622722 8.2:+63889568 MS.gene019406:CDS
TGTGAACCTTGTATCCAAGA+GGG 0.623359 8.2:-63889653 None:intergenic
GCGGCGCTACAGAATATGGC+GGG 0.624552 8.2:-63889378 None:intergenic
ATCGATATGTGAGGACGCGG+CGG 0.627272 8.2:+63889607 MS.gene019406:CDS
CAACACTGGAGGTGACAACA+AGG 0.627680 8.2:-63889446 None:intergenic
CATGAGGAAGGTGACTATGG+CGG 0.631252 8.2:+63889584 MS.gene019406:CDS
GTCGGTAGTGATGGAATATG+CGG 0.639677 8.2:-63889397 None:intergenic
TCGAAGGTTGAGAAGCATGT+CGG 0.639692 8.2:-63889255 None:intergenic
ATGTGAACCTTGTATCCAAG+AGG 0.641365 8.2:-63889654 None:intergenic
CTTCATGAATGCCGTCGTCG+CGG 0.648096 8.2:+63889486 MS.gene019406:CDS
TATCCAAGAGGGAAATCCCA+AGG 0.655740 8.2:-63889642 None:intergenic
GCTGATTGCTGTCATGAGGA+AGG 0.663926 8.2:+63889572 MS.gene019406:CDS
GTGACAACAAGGCTGAGCGA+GGG 0.665503 8.2:-63889435 None:intergenic
TTGTTGCAGTGATAGGCCTG+AGG 0.677465 8.2:-63889319 None:intergenic
GTTTGTGTGAACTTGTGGCA+GGG 0.679026 8.2:+63890581 MS.gene019406:CDS
GTGATCAGTTCCAACACTGG+AGG 0.687001 8.2:-63889457 None:intergenic
GGGAAGAAGGTTGAGAACGT+CGG 0.695377 8.2:-63889415 None:intergenic
TGCGGCGCTACAGAATATGG+CGG 0.715711 8.2:-63889379 None:intergenic
CTATGGCGGATCGATATGTG+AGG 0.738984 8.2:+63889598 MS.gene019406:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTCAATTTCTCATGAA+TGG - chr8.2:63889905-63889924 None:intergenic 20.0%
!! ATGAGAAATTGAAATTTCTT+TGG + chr8.2:63889908-63889927 MS.gene019406:intron 20.0%
!!! AATTTTTTCCGATGTTAATT+TGG - chr8.2:63889757-63889776 None:intergenic 20.0%
! CAATAACATTGGAATAGAAA+GGG - chr8.2:63890264-63890283 None:intergenic 25.0%
! TAACCTATCCAAATTAACAT+CGG + chr8.2:63889746-63889765 MS.gene019406:intron 25.0%
! TCAATAACATTGGAATAGAA+AGG - chr8.2:63890265-63890284 None:intergenic 25.0%
! TTTATTGTAAATGTTGGAAG+AGG + chr8.2:63890388-63890407 MS.gene019406:CDS 25.0%
!! AATCATATTGAAAGTGCATA+TGG + chr8.2:63890047-63890066 MS.gene019406:intron 25.0%
!!! TTTTCACTGTTTTAGTTATC+AGG + chr8.2:63890121-63890140 MS.gene019406:intron 25.0%
ACAATTGATCAAGTGTTTGA+TGG + chr8.2:63890429-63890448 MS.gene019406:CDS 30.0%
ACATGAAGTATATGTTGAAG+TGG - chr8.2:63889966-63889985 None:intergenic 30.0%
AGTTGCAAGATCAATAACAT+TGG - chr8.2:63890275-63890294 None:intergenic 30.0%
GAAGGGTTTATTGTAAATGT+TGG + chr8.2:63890382-63890401 MS.gene019406:CDS 30.0%
! ATTGTTGGATTAGGAAGTAT+TGG + chr8.2:63890157-63890176 MS.gene019406:CDS 30.0%
! TTTCCGATGTTAATTTGGAT+AGG - chr8.2:63889752-63889771 None:intergenic 30.0%
! TTTTGGCATTAGGAAAAGAA+GGG + chr8.2:63890365-63890384 MS.gene019406:CDS 30.0%
AACATCACTGGACTAATTAG+TGG - chr8.2:63890634-63890653 None:intergenic 35.0%
AATGAGTTTGTGTGAACTTG+TGG + chr8.2:63890576-63890595 MS.gene019406:CDS 35.0%
ACTAATTAGTCCAGTGATGT+TGG + chr8.2:63890633-63890652 MS.gene019406:CDS 35.0%
ATTGTAAATGTTGGAAGAGG+TGG + chr8.2:63890391-63890410 MS.gene019406:CDS 35.0%
GAATATTAGTGTCTCACTAC+TGG - chr8.2:63889833-63889852 None:intergenic 35.0%
TGATGAAAAGCTCTTTGCAA+TGG + chr8.2:63890504-63890523 MS.gene019406:CDS 35.0%
TGTTTACTATGTGTCGTGTT+CGG - chr8.2:63890336-63890355 None:intergenic 35.0%
TTGATCAAGTGTTTGATGGA+AGG + chr8.2:63890433-63890452 MS.gene019406:CDS 35.0%
! AAGAGCTTTTCATCAACATG+AGG - chr8.2:63890499-63890518 None:intergenic 35.0%
! AGTAAACAACGATGTCCTTT+TGG + chr8.2:63890348-63890367 MS.gene019406:CDS 35.0%
! ATGTCTTTTGATGCTTAGAG+TGG - chr8.2:63890231-63890250 None:intergenic 35.0%
! CAAGAACAAGTACTTTTGGA+AGG - chr8.2:63889230-63889249 None:intergenic 35.0%
! CTTCTTTTCCTAATGCCAAA+AGG - chr8.2:63890366-63890385 None:intergenic 35.0%
! CTTTTGGCATTAGGAAAAGA+AGG + chr8.2:63890364-63890383 MS.gene019406:CDS 35.0%
! GAAGCGACAATTCTATGTTT+TGG - chr8.2:63890022-63890041 None:intergenic 35.0%
! TGGTTCATCTCACATTTTGT+TGG - chr8.2:63890002-63890021 None:intergenic 35.0%
!! AAGTACTTTTGGAAGGTCTT+TGG - chr8.2:63889223-63889242 None:intergenic 35.0%
!! CTTCCAAAAGTACTTGTTCT+TGG + chr8.2:63889228-63889247 MS.gene019406:CDS 35.0%
!!! GAAGTGGTTTTTTTTTCTGC+TGG - chr8.2:63889950-63889969 None:intergenic 35.0%
AATGTGATCAGTTCCAACAC+TGG - chr8.2:63889463-63889482 None:intergenic 40.0%
ATGTGAACCTTGTATCCAAG+AGG - chr8.2:63889657-63889676 None:intergenic 40.0%
CTTCTACTTGCTTCTCTTCA+AGG - chr8.2:63889788-63889807 None:intergenic 40.0%
GCTCTTTGCAATGGATAATG+TGG + chr8.2:63890513-63890532 MS.gene019406:CDS 40.0%
GGATGAATTGTTGCAGTGAT+AGG - chr8.2:63889329-63889348 None:intergenic 40.0%
TGTGAACCTTGTATCCAAGA+GGG - chr8.2:63889656-63889675 None:intergenic 40.0%
TTGATGGAAGGAGAAATTGC+TGG + chr8.2:63890445-63890464 MS.gene019406:CDS 40.0%
! AACGATGTCCTTTTGGCATT+AGG + chr8.2:63890355-63890374 MS.gene019406:CDS 40.0%
! AATATGGCGGGAATTGTTGA+TGG - chr8.2:63889369-63889388 None:intergenic 40.0%
! CGAGTTGGAATTGTTGGATT+AGG + chr8.2:63890148-63890167 MS.gene019406:CDS 40.0%
! GGACCAAGAACAAGTACTTT+TGG - chr8.2:63889234-63889253 None:intergenic 40.0%
!! TGGATTAGGAAGTATTGGCA+TGG + chr8.2:63890162-63890181 MS.gene019406:CDS 40.0%
!! TGTTGATGGATTGTGGTTGT+GGG - chr8.2:63889355-63889374 None:intergenic 40.0%
!! TTGTTGATGGATTGTGGTTG+TGG - chr8.2:63889356-63889375 None:intergenic 40.0%
ACAGTGAAAGCTGCAGAATG+TGG - chr8.2:63890547-63890566 None:intergenic 45.0%
ACTTGCTTCTCTTCAAGGTC+TGG - chr8.2:63889783-63889802 None:intergenic 45.0%
AGTTTGTGTGAACTTGTGGC+AGG + chr8.2:63890580-63890599 MS.gene019406:CDS 45.0%
ATATGCGGCGCTACAGAATA+TGG - chr8.2:63889385-63889404 None:intergenic 45.0%
GCGCAACAAACATGCACTTA+AGG + chr8.2:63890092-63890111 MS.gene019406:intron 45.0%
GGATTTCCCTCTTGGATACA+AGG + chr8.2:63889647-63889666 MS.gene019406:CDS 45.0%
GTGAGAGTAGAGTTGTTCGA+AGG - chr8.2:63889274-63889293 None:intergenic 45.0%
GTTTGTGTGAACTTGTGGCA+GGG + chr8.2:63890581-63890600 MS.gene019406:CDS 45.0%
TAGTTATCAGGCAAGCGAGT+TGG + chr8.2:63890133-63890152 MS.gene019406:intron 45.0%
TATCCAAGAGGGAAATCCCA+AGG - chr8.2:63889645-63889664 None:intergenic 45.0%
TCTCACTACTGGTAAGAACG+AGG - chr8.2:63889822-63889841 None:intergenic 45.0%
TGTCATGAGGAAGGTGACTA+TGG + chr8.2:63889581-63889600 MS.gene019406:CDS 45.0%
! AGGAGTTTTCTCCAAGGATG+TGG + chr8.2:63889530-63889549 MS.gene019406:CDS 45.0%
! ATGGATTGTGGTTGTGGGAA+AGG - chr8.2:63889350-63889369 None:intergenic 45.0%
! GTCGGTAGTGATGGAATATG+CGG - chr8.2:63889400-63889419 None:intergenic 45.0%
! TCGAAGGTTGAGAAGCATGT+CGG - chr8.2:63889258-63889277 None:intergenic 45.0%
!! AGAAATTGCTGGTGCTGGTT+TGG + chr8.2:63890456-63890475 MS.gene019406:CDS 45.0%
!! CGGGAATTGTTGATGGATTG+TGG - chr8.2:63889362-63889381 None:intergenic 45.0%
AACTTCTAGCGACGCACTTG+TGG + chr8.2:63890291-63890310 MS.gene019406:CDS 50.0%
AGTGATAGGCCTGAGGGTTT+GGG - chr8.2:63889315-63889334 None:intergenic 50.0%
CAACACTGGAGGTGACAACA+AGG - chr8.2:63889449-63889468 None:intergenic 50.0%
CATGAGGAAGGTGACTATGG+CGG + chr8.2:63889584-63889603 MS.gene019406:CDS 50.0%
CTCCAAGGATGTGGCTGATA+TGG + chr8.2:63889539-63889558 MS.gene019406:CDS 50.0%
GAAGGAGAAATTGCTGGTGC+TGG + chr8.2:63890451-63890470 MS.gene019406:CDS 50.0%
GATCCTTGGGATTTCCCTCT+TGG + chr8.2:63889639-63889658 MS.gene019406:CDS 50.0%
GCTGATTGCTGTCATGAGGA+AGG + chr8.2:63889572-63889591 MS.gene019406:CDS 50.0%
GGGAAGAAGGTTGAGAACGT+CGG - chr8.2:63889418-63889437 None:intergenic 50.0%
GTGATCAGTTCCAACACTGG+AGG - chr8.2:63889460-63889479 None:intergenic 50.0%
GTTGAGAACGTCGGTAGTGA+TGG - chr8.2:63889409-63889428 None:intergenic 50.0%
TGCCATATCAGCCACATCCT+TGG - chr8.2:63889544-63889563 None:intergenic 50.0%
TGTTGCAGTGATAGGCCTGA+GGG - chr8.2:63889321-63889340 None:intergenic 50.0%
TTCCTAAACCCCAAACCCTC+AGG + chr8.2:63889303-63889322 MS.gene019406:CDS 50.0%
TTGTTGCAGTGATAGGCCTG+AGG - chr8.2:63889322-63889341 None:intergenic 50.0%
! AAGGTTGAGAAGCATGTCGG+TGG - chr8.2:63889255-63889274 None:intergenic 50.0%
! CGTTGCTGATTGCTGTCATG+AGG + chr8.2:63889568-63889587 MS.gene019406:CDS 50.0%
! CTTGTTGTCACCTCCAGTGT+TGG + chr8.2:63889447-63889466 MS.gene019406:CDS 50.0%
! GGCAAGCGAGTTGGAATTGT+TGG + chr8.2:63890142-63890161 MS.gene019406:CDS 50.0%
! TGCTGGAGGAGTTTTCTCCA+AGG + chr8.2:63889524-63889543 MS.gene019406:CDS 50.0%
!! CTATGGCGGATCGATATGTG+AGG + chr8.2:63889598-63889617 MS.gene019406:CDS 50.0%
ATCGATATGTGAGGACGCGG+CGG + chr8.2:63889607-63889626 MS.gene019406:CDS 55.0%
CAACCTGAATTCCGCGACGA+CGG - chr8.2:63889500-63889519 None:intergenic 55.0%
CAGTGATAGGCCTGAGGGTT+TGG - chr8.2:63889316-63889335 None:intergenic 55.0%
CGGATCGATATGTGAGGACG+CGG + chr8.2:63889604-63889623 MS.gene019406:CDS 55.0%
CTTCATGAATGCCGTCGTCG+CGG + chr8.2:63889486-63889505 MS.gene019406:CDS 55.0%
GCGGGAACGTTCTGATCCTT+GGG + chr8.2:63889626-63889645 MS.gene019406:CDS 55.0%
GGAGAAAACTCCTCCAGCAC+CGG - chr8.2:63889523-63889542 None:intergenic 55.0%
GTGACAACAAGGCTGAGCGA+GGG - chr8.2:63889438-63889457 None:intergenic 55.0%
GTGATAGGCCTGAGGGTTTG+GGG - chr8.2:63889314-63889333 None:intergenic 55.0%
TGCGGCGCTACAGAATATGG+CGG - chr8.2:63889382-63889401 None:intergenic 55.0%
ATGCCGTCGTCGCGGAATTC+AGG + chr8.2:63889494-63889513 MS.gene019406:CDS 60.0%
CAAGGCTGAGCGAGGGAAGA+AGG - chr8.2:63889431-63889450 None:intergenic 60.0%
CGCGACGACGGCATTCATGA+AGG - chr8.2:63889488-63889507 None:intergenic 60.0%
GCGGCGCTACAGAATATGGC+GGG - chr8.2:63889381-63889400 None:intergenic 60.0%
GGCGGGAACGTTCTGATCCT+TGG + chr8.2:63889625-63889644 MS.gene019406:CDS 60.0%
GGTGACAACAAGGCTGAGCG+AGG - chr8.2:63889439-63889458 None:intergenic 60.0%
TCGATATGTGAGGACGCGGC+GGG + chr8.2:63889608-63889627 MS.gene019406:CDS 60.0%
! GGCCTGAGGGTTTGGGGTTT+AGG - chr8.2:63889308-63889327 None:intergenic 60.0%
!! ATTCAGGTTGCCGGTGCTGG+AGG + chr8.2:63889510-63889529 MS.gene019406:CDS 60.0%
!! CGTCGCGGAATTCAGGTTGC+CGG + chr8.2:63889501-63889520 MS.gene019406:CDS 60.0%
!! GGAATTCAGGTTGCCGGTGC+TGG + chr8.2:63889507-63889526 MS.gene019406:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 63889216 63890663 63889216 ID=MS.gene019406
chr8.2 mRNA 63889216 63890663 63889216 ID=MS.gene019406.t1;Parent=MS.gene019406
chr8.2 exon 63889216 63889668 63889216 ID=MS.gene019406.t1.exon1;Parent=MS.gene019406.t1
chr8.2 CDS 63889216 63889668 63889216 ID=cds.MS.gene019406.t1;Parent=MS.gene019406.t1
chr8.2 exon 63890136 63890663 63890136 ID=MS.gene019406.t1.exon2;Parent=MS.gene019406.t1
chr8.2 CDS 63890136 63890663 63890136 ID=cds.MS.gene019406.t1;Parent=MS.gene019406.t1
Gene Sequence

>MS.gene019406

ATGGCCAAAGACCTTCCAAAAGTACTTGTTCTTGGTCCACCGACATGCTTCTCAACCTTCGAACAACTCTACTCTCACAAATTCAATTTCCTAAACCCCAAACCCTCAGGCCTATCACTGCAACAATTCATCCTTTCCCACAACCACAATCCATCAACAATTCCCGCCATATTCTGTAGCGCCGCATATTCCATCACTACCGACGTTCTCAACCTTCTTCCCTCGCTCAGCCTTGTTGTCACCTCCAGTGTTGGAACTGATCACATTGACCTTCATGAATGCCGTCGTCGCGGAATTCAGGTTGCCGGTGCTGGAGGAGTTTTCTCCAAGGATGTGGCTGATATGGCAGTTGCGTTGCTGATTGCTGTCATGAGGAAGGTGACTATGGCGGATCGATATGTGAGGACGCGGCGGGAACGTTCTGATCCTTGGGATTTCCCTCTTGGATACAAGGTTCACATTTTCATTACTTTACTTTATTTTTATTTTGTATTTATTATTTGATGAGAGTTTATTTTAAGAAGTTAAACTAACCTATCCAAATTAACATCGGAAAAAATTGAACCAGACCTTGAAGAGAAGCAAGTAGAAGTTCAAAGTTATCCTCGTTCTTACCAGTAGTGAGACACTAATATTCGTTATATAGTATGATGAACTAACAATTACAAATCAATTTCAAAGTAGATCCATTCATGAGAAATTGAAATTTCTTTGGCATTATAGCTAATTTACCAGCAGAAAAAAAAACCACTTCAACATATACTTCATGTTTATTTGAAAACTCCAACAAAATGTGAGATGAACCAAAACATAGAATTGTCGCTTCAGTAAAATCATATTGAAAGTGCATATGGATGCGAAAAATATTGATTAGACGCGCAACAAACATGCACTTAAGGTTTTGTTTTTCACTGTTTTAGTTATCAGGCAAGCGAGTTGGAATTGTTGGATTAGGAAGTATTGGCATGGAAGTAGCTAAGCGACTCGAGTCATTTGATTGCATTATCTCGTACCACTCTAAGCATCAAAAGACATCAATTTCGTACCCTTTCTATTCCAATGTTATTGATCTTGCAACTTCTAGCGACGCACTTGTGGTATGTTGTGCACTAAACAACCGAACACGACACATAGTAAACAACGATGTCCTTTTGGCATTAGGAAAAGAAGGGTTTATTGTAAATGTTGGAAGAGGTGGTCTTATTGATGAGAAACAATTGATCAAGTGTTTGATGGAAGGAGAAATTGCTGGTGCTGGTTTGGATGTGTTTGAGAATGAGCCTCATGTTGATGAAAAGCTCTTTGCAATGGATAATGTGGTTTTATCTCCACATTCTGCAGCTTTCACTGTTGAAGCTACAATGAGTTTGTGTGAACTTGTGGCAGGGAATTTAGAAGCTTTCTTCTTAAACAAGCCACTAATTAGTCCAGTGATGTTGGTTGAGTAA
Protein sequence

>MS.gene019406.t1

MAKDLPKVLVLGPPTCFSTFEQLYSHKFNFLNPKPSGLSLQQFILSHNHNPSTIPAIFCSAAYSITTDVLNLLPSLSLVVTSSVGTDHIDLHECRRRGIQVAGAGGVFSKDVADMAVALLIAVMRKVTMADRYVRTRRERSDPWDFPLGYKLSGKRVGIVGLGSIGMEVAKRLESFDCIISYHSKHQKTSISYPFYSNVIDLATSSDALVVCCALNNRTRHIVNNDVLLALGKEGFIVNVGRGGLIDEKQLIKCLMEGEIAGAGLDVFENEPHVDEKLFAMDNVVLSPHSAAFTVEATMSLCELVAGNLEAFFLNKPLISPVMLVE