Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020274.t1 | XP_013449782.1 | 99.2 | 656 | 5 | 0 | 1 | 656 | 1 | 656 | 0.00E+00 | 1268.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020274.t1 | Q9SV13 | 74.0 | 661 | 164 | 4 | 1 | 656 | 1 | 658 | 1.3e-279 | 963.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020274.t1 | A0A072UDA6 | 99.2 | 656 | 5 | 0 | 1 | 656 | 1 | 656 | 0.0e+00 | 1268.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene43089 | MS.gene020274 | PPI |
MS.gene56083 | MS.gene020274 | PPI |
MS.gene006936 | MS.gene020274 | PPI |
MS.gene33360 | MS.gene020274 | PPI |
MS.gene059517 | MS.gene020274 | PPI |
MS.gene33361 | MS.gene020274 | PPI |
MS.gene033981 | MS.gene020274 | PPI |
MS.gene33359 | MS.gene020274 | PPI |
MS.gene98424 | MS.gene020274 | PPI |
MS.gene061401 | MS.gene020274 | PPI |
MS.gene61200 | MS.gene020274 | PPI |
MS.gene92478 | MS.gene020274 | PPI |
MS.gene052232 | MS.gene020274 | PPI |
MS.gene79239 | MS.gene020274 | PPI |
MS.gene020274 | MS.gene061401 | PPI |
MS.gene75452 | MS.gene020274 | PPI |
MS.gene045087 | MS.gene020274 | PPI |
MS.gene89102 | MS.gene020274 | PPI |
MS.gene36287 | MS.gene020274 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020274.t1 | MTR_7g095430 | 99.238 | 656 | 5 | 0 | 1 | 656 | 1 | 656 | 0.0 | 1335 |
MS.gene020274.t1 | MTR_7g095430 | 99.298 | 570 | 4 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1160 |
MS.gene020274.t1 | MTR_1g071530 | 83.005 | 659 | 106 | 4 | 1 | 656 | 1 | 656 | 0.0 | 1093 |
MS.gene020274.t1 | MTR_2g102243 | 58.347 | 629 | 259 | 1 | 17 | 645 | 22 | 647 | 0.0 | 769 |
MS.gene020274.t1 | MTR_4g084620 | 55.194 | 645 | 280 | 3 | 1 | 641 | 1 | 640 | 0.0 | 742 |
MS.gene020274.t1 | MTR_4g011970 | 55.962 | 629 | 274 | 1 | 17 | 645 | 29 | 654 | 0.0 | 740 |
MS.gene020274.t1 | MTR_4g084640 | 55.821 | 627 | 273 | 2 | 16 | 641 | 20 | 643 | 0.0 | 736 |
MS.gene020274.t1 | MTR_5g061880 | 53.635 | 619 | 286 | 1 | 18 | 635 | 30 | 648 | 0.0 | 732 |
MS.gene020274.t1 | MTR_2g102243 | 59.747 | 554 | 223 | 0 | 17 | 570 | 22 | 575 | 0.0 | 706 |
MS.gene020274.t1 | MTR_6g086170 | 51.956 | 639 | 300 | 3 | 13 | 648 | 3 | 637 | 0.0 | 704 |
MS.gene020274.t1 | MTR_3g073780 | 52.472 | 627 | 294 | 3 | 18 | 641 | 33 | 658 | 0.0 | 702 |
MS.gene020274.t1 | MTR_2g008470 | 52.998 | 617 | 288 | 2 | 17 | 632 | 34 | 649 | 0.0 | 681 |
MS.gene020274.t1 | MTR_2g008470 | 52.998 | 617 | 288 | 2 | 17 | 632 | 53 | 668 | 0.0 | 681 |
MS.gene020274.t1 | MTR_3g073780 | 53.514 | 555 | 254 | 3 | 18 | 569 | 33 | 586 | 0.0 | 638 |
MS.gene020274.t1 | MTR_3g073780 | 54.459 | 527 | 237 | 2 | 18 | 541 | 33 | 559 | 0.0 | 617 |
MS.gene020274.t1 | MTR_5g061860 | 48.636 | 623 | 305 | 7 | 23 | 634 | 28 | 646 | 0.0 | 600 |
MS.gene020274.t1 | MTR_3g087740 | 47.068 | 614 | 321 | 4 | 24 | 634 | 37 | 649 | 0.0 | 580 |
MS.gene020274.t1 | MTR_3g073730 | 48.061 | 593 | 300 | 3 | 50 | 634 | 60 | 652 | 0.0 | 563 |
MS.gene020274.t1 | MTR_5g061860 | 49.245 | 530 | 255 | 6 | 23 | 541 | 28 | 554 | 7.51e-177 | 514 |
MS.gene020274.t1 | MTR_3g087730 | 39.326 | 623 | 357 | 9 | 23 | 631 | 34 | 649 | 1.18e-157 | 469 |
MS.gene020274.t1 | MTR_7g022870 | 36.742 | 577 | 351 | 8 | 62 | 634 | 70 | 636 | 1.20e-125 | 388 |
MS.gene020274.t1 | MTR_7g022870 | 37.769 | 511 | 304 | 8 | 62 | 568 | 70 | 570 | 7.98e-111 | 345 |
MS.gene020274.t1 | MTR_6g024420 | 28.477 | 151 | 87 | 4 | 199 | 349 | 35 | 164 | 5.09e-15 | 73.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020274.t1 | AT3G51895 | 73.979 | 661 | 164 | 4 | 1 | 656 | 46 | 703 | 0.0 | 1018 |
MS.gene020274.t1 | AT3G51895 | 73.979 | 661 | 164 | 4 | 1 | 656 | 1 | 658 | 0.0 | 1017 |
MS.gene020274.t1 | AT4G02700 | 67.453 | 636 | 206 | 1 | 10 | 644 | 2 | 637 | 0.0 | 891 |
MS.gene020274.t1 | AT1G23090 | 56.683 | 621 | 268 | 1 | 17 | 636 | 3 | 623 | 0.0 | 748 |
MS.gene020274.t1 | AT3G15990 | 55.130 | 653 | 281 | 3 | 1 | 644 | 1 | 650 | 0.0 | 741 |
MS.gene020274.t1 | AT5G19600 | 53.160 | 617 | 277 | 4 | 28 | 642 | 25 | 631 | 0.0 | 681 |
MS.gene020274.t1 | AT4G08620 | 53.312 | 619 | 288 | 1 | 18 | 635 | 23 | 641 | 0.0 | 680 |
MS.gene020274.t1 | AT1G22150 | 51.752 | 628 | 302 | 1 | 9 | 635 | 22 | 649 | 0.0 | 674 |
MS.gene020274.t1 | AT1G22150 | 51.752 | 628 | 302 | 1 | 9 | 635 | 22 | 649 | 0.0 | 674 |
MS.gene020274.t1 | AT1G22150 | 51.752 | 628 | 302 | 1 | 9 | 635 | 22 | 649 | 0.0 | 674 |
MS.gene020274.t1 | AT1G78000 | 52.589 | 618 | 292 | 1 | 18 | 634 | 28 | 645 | 0.0 | 660 |
MS.gene020274.t1 | AT1G78000 | 52.589 | 618 | 292 | 1 | 18 | 634 | 28 | 645 | 0.0 | 660 |
MS.gene020274.t1 | AT1G78000 | 52.589 | 618 | 292 | 1 | 18 | 634 | 28 | 645 | 0.0 | 660 |
MS.gene020274.t1 | AT1G78000 | 53.103 | 580 | 271 | 1 | 18 | 596 | 28 | 607 | 0.0 | 627 |
MS.gene020274.t1 | AT1G22150 | 52.135 | 562 | 268 | 1 | 9 | 569 | 22 | 583 | 0.0 | 610 |
MS.gene020274.t1 | AT1G78000 | 53.501 | 557 | 258 | 1 | 18 | 573 | 28 | 584 | 0.0 | 603 |
MS.gene020274.t1 | AT5G10180 | 48.864 | 616 | 308 | 6 | 24 | 634 | 59 | 672 | 0.0 | 592 |
MS.gene020274.t1 | AT1G23090 | 55.193 | 491 | 219 | 1 | 147 | 636 | 1 | 491 | 0.0 | 568 |
MS.gene020274.t1 | AT1G23090 | 55.193 | 491 | 219 | 1 | 147 | 636 | 1 | 491 | 0.0 | 568 |
MS.gene020274.t1 | AT1G23090 | 55.193 | 491 | 219 | 1 | 147 | 636 | 1 | 491 | 0.0 | 568 |
MS.gene020274.t1 | AT1G77990 | 48.789 | 578 | 291 | 3 | 61 | 633 | 88 | 665 | 0.0 | 555 |
MS.gene020274.t1 | AT1G78000 | 54.957 | 464 | 208 | 1 | 18 | 480 | 28 | 491 | 2.53e-172 | 501 |
MS.gene020274.t1 | AT1G78000 | 52.339 | 449 | 213 | 1 | 126 | 573 | 1 | 449 | 8.58e-160 | 468 |
MS.gene020274.t1 | AT3G12520 | 37.099 | 593 | 346 | 10 | 67 | 651 | 52 | 625 | 1.60e-124 | 384 |
MS.gene020274.t1 | AT3G12520 | 37.099 | 593 | 346 | 10 | 67 | 651 | 68 | 641 | 2.25e-124 | 384 |
MS.gene020274.t1 | AT5G13550 | 34.887 | 622 | 369 | 11 | 21 | 634 | 49 | 642 | 1.51e-119 | 372 |
MS.gene020274.t1 | AT3G12520 | 39.167 | 480 | 275 | 7 | 67 | 541 | 68 | 535 | 1.02e-105 | 331 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTAAAACAAATGTTCT+AGG | 0.204883 | 7.4:-13840201 | None:intergenic |
GTATGCTTCAGTGCATATTT+TGG | 0.224904 | 7.4:+13839993 | MS.gene020274:CDS |
TTTCTGTAAGCACCAGAATT+TGG | 0.230270 | 7.4:-13840228 | None:intergenic |
GCCTCTGACGTCAGTTATAT+TGG | 0.231185 | 7.4:+13838447 | MS.gene020274:CDS |
TTGATGAAATAGGACATAAA+TGG | 0.231725 | 7.4:+13840980 | MS.gene020274:CDS |
TTAGGAAACATTCCAAATTC+TGG | 0.234121 | 7.4:+13840216 | MS.gene020274:CDS |
AACGACAACCAAGGTTCTTT+TGG | 0.247965 | 7.4:+13838410 | MS.gene020274:CDS |
GCTAACCTCCCTCCAATTCT+TGG | 0.277029 | 7.4:+13834778 | MS.gene020274:CDS |
TCAAAGTTCCTTGATGAAAT+AGG | 0.280843 | 7.4:+13840970 | MS.gene020274:CDS |
TTGTGGGGCCCACTCCAAAA+TGG | 0.293257 | 7.4:-13834665 | None:intergenic |
TGGGATCACCATTGCTAGTT+TGG | 0.293478 | 7.4:+13834723 | MS.gene020274:CDS |
ACCTTCTGATTCATCTTTCA+TGG | 0.305433 | 7.4:-13841070 | None:intergenic |
TTCTTCGTCACTTCGCTTCC+AGG | 0.313848 | 7.4:-13840937 | None:intergenic |
TTTCTTTATTGCCATCAATA+TGG | 0.316265 | 7.4:-13839570 | None:intergenic |
TTCCTGTGTTTAGCTCGTTA+TGG | 0.328261 | 7.4:+13840909 | MS.gene020274:intron |
CTGTCACATGCAGCCATTGT+AGG | 0.334792 | 7.4:+13836918 | MS.gene020274:CDS |
TTCAAGAATTACCATATTGA+TGG | 0.336656 | 7.4:+13839559 | MS.gene020274:CDS |
AAAAGCTTTGGGTTCTCAAT+TGG | 0.345326 | 7.4:-13835674 | None:intergenic |
AGTTATATTGGGAAGTATAT+TGG | 0.347770 | 7.4:+13838459 | MS.gene020274:CDS |
ATTTCAAGAATTAGTATTCC+AGG | 0.356212 | 7.4:-13840282 | None:intergenic |
AGTTATCACTTGGCTTGTTT+AGG | 0.356715 | 7.4:+13835741 | MS.gene020274:CDS |
GTGTTTGTGTCACCTTATAT+AGG | 0.361063 | 7.4:+13839352 | MS.gene020274:CDS |
CAGCTTGCAGTATGTTATAA+TGG | 0.364477 | 7.4:+13840483 | MS.gene020274:CDS |
ATCAAAACTGGATTCATTAC+TGG | 0.367587 | 7.4:+13839382 | MS.gene020274:CDS |
CAAAATGCACATCATGTTCC+TGG | 0.371716 | 7.4:+13840264 | MS.gene020274:CDS |
TTGATGGCTGTGCCTATATA+AGG | 0.372271 | 7.4:-13839364 | None:intergenic |
TCCACCTTCAGCAACAGATT+TGG | 0.376962 | 7.4:+13839330 | MS.gene020274:CDS |
TTTACAGCTACATTCTTTGC+TGG | 0.386608 | 7.4:+13835710 | MS.gene020274:CDS |
GATGGGTAGCTCAAGAGATT+TGG | 0.388069 | 7.4:+13835589 | MS.gene020274:CDS |
TTGAAATCAGACCTTATTGC+TGG | 0.391654 | 7.4:+13834703 | MS.gene020274:CDS |
TACTTACAAAGTCCAAGAAT+TGG | 0.393123 | 7.4:-13834790 | None:intergenic |
ATAGGCACAGCCATCAAAAC+TGG | 0.396130 | 7.4:+13839370 | MS.gene020274:CDS |
TGCAGCCATTGTAGGGTTCA+TGG | 0.404457 | 7.4:+13836926 | MS.gene020274:CDS |
CTCTCAACGTTCATGCTTGA+AGG | 0.404942 | 7.4:-13834490 | None:intergenic |
CCTTCTGATTCATCTTTCAT+GGG | 0.407951 | 7.4:-13841069 | None:intergenic |
AAGCATTGCAGAGACAATTA+TGG | 0.408833 | 7.4:-13839910 | None:intergenic |
GAAGAGGAAGAGAGAATTGA+AGG | 0.423089 | 7.4:+13840448 | MS.gene020274:CDS |
AATAAAGAAATGATAGCTAT+TGG | 0.423362 | 7.4:+13839583 | MS.gene020274:CDS |
TGATGAAATAGGACATAAAT+GGG | 0.438268 | 7.4:+13840981 | MS.gene020274:CDS |
GCGGTGGGAACTGTGGCGGT+TGG | 0.442629 | 7.4:+13835611 | MS.gene020274:CDS |
CCTCTGACGTCAGTTATATT+GGG | 0.447522 | 7.4:+13838448 | MS.gene020274:CDS |
ACTTCTGATGGCATCCATGT+TGG | 0.448064 | 7.4:+13835637 | MS.gene020274:CDS |
CAATGGTGATCCCAGCAATA+AGG | 0.448097 | 7.4:-13834714 | None:intergenic |
TGTAATGGAACAAAGGTGTT+AGG | 0.451042 | 7.4:-13839866 | None:intergenic |
ACCTCTTGCTACCTCACAAC+AGG | 0.453364 | 7.4:+13839631 | MS.gene020274:CDS |
GAAGAGAGAATTGAAGGTGC+AGG | 0.453685 | 7.4:+13840454 | MS.gene020274:CDS |
ATTCACTTCTGCAGTGGAGG+TGG | 0.454970 | 7.4:+13837424 | MS.gene020274:intron |
AAGAAGACGGTCGACAGAAA+AGG | 0.455485 | 7.4:+13840771 | MS.gene020274:CDS |
CTTCTGATGGCATCCATGTT+GGG | 0.457178 | 7.4:+13835638 | MS.gene020274:CDS |
TGTCACATGCAGCCATTGTA+GGG | 0.461221 | 7.4:+13836919 | MS.gene020274:CDS |
ATGAAGCAGCAATCCATTTG+TGG | 0.462166 | 7.4:+13839946 | MS.gene020274:CDS |
TCGGCTGTAAACTATAATGC+TGG | 0.465281 | 7.4:+13839783 | MS.gene020274:CDS |
TGTGGGGCCCACTCCAAAAT+GGG | 0.471681 | 7.4:-13834664 | None:intergenic |
TCAGATTGGGGAATTGAAGA+AGG | 0.476906 | 7.4:+13839300 | MS.gene020274:intron |
ATAATTGTCTCTGCAATGCT+TGG | 0.478097 | 7.4:+13839912 | MS.gene020274:CDS |
TTTACAGCCGAACGCGAAAA+CGG | 0.482596 | 7.4:-13839771 | None:intergenic |
TCAAGAACCAACCAGCTTCA+AGG | 0.487617 | 7.4:+13834611 | MS.gene020274:CDS |
AGAAGACGGTCGACAGAAAA+GGG | 0.487709 | 7.4:+13840772 | MS.gene020274:CDS |
GAGGTGGGAAAGTGCAGTGT+TGG | 0.487836 | 7.4:+13837440 | MS.gene020274:CDS |
AGGTGGGAAAGTGCAGTGTT+GGG | 0.488286 | 7.4:+13837441 | MS.gene020274:CDS |
ACCGTTGGTCTATGCAATGA+TGG | 0.496527 | 7.4:+13835571 | MS.gene020274:CDS |
AGAACTGAAGGGTGTATTGT+GGG | 0.506940 | 7.4:-13834681 | None:intergenic |
ATTTATGTCCTATTTCATCA+AGG | 0.508724 | 7.4:-13840978 | None:intergenic |
TCTTCGTCACTTCGCTTCCA+GGG | 0.509240 | 7.4:-13840936 | None:intergenic |
AGCTCAAGAGATTTGGCGGT+GGG | 0.522130 | 7.4:+13835596 | MS.gene020274:CDS |
AGCACAAACCTCCTTGAAGC+TGG | 0.523152 | 7.4:-13834622 | None:intergenic |
AAGAGAGAATTGAAGGTGCA+GGG | 0.527221 | 7.4:+13840455 | MS.gene020274:CDS |
ACCAAATCTGTTGCTGAAGG+TGG | 0.529318 | 7.4:-13839331 | None:intergenic |
CACAAGGTGGATTGATGAAG+AGG | 0.531514 | 7.4:+13840432 | MS.gene020274:CDS |
GCAGCCATTGTAGGGTTCAT+GGG | 0.535098 | 7.4:+13836927 | MS.gene020274:CDS |
TTCACTTCTGCAGTGGAGGT+GGG | 0.535436 | 7.4:+13837425 | MS.gene020274:intron |
CAGATTGGGGAATTGAAGAA+GGG | 0.538657 | 7.4:+13839301 | MS.gene020274:intron |
TTGTATTAAGAGATGGGTAA+TGG | 0.539624 | 7.4:+13834454 | None:intergenic |
TTCAAGCTTTATACCACCGT+TGG | 0.545771 | 7.4:+13835556 | MS.gene020274:CDS |
TGCAGCATCAAACATTGTAA+TGG | 0.547355 | 7.4:+13839815 | MS.gene020274:CDS |
CAAACCTCCTTGAAGCTGGT+TGG | 0.549238 | 7.4:-13834618 | None:intergenic |
GTGCAGGTTAGGGTTTATTG+TGG | 0.550537 | 7.4:+13836890 | MS.gene020274:intron |
TGAAATCAGACCTTATTGCT+GGG | 0.550546 | 7.4:+13834704 | MS.gene020274:CDS |
GTTCCATTACACTCCTCTAG+TGG | 0.550591 | 7.4:+13839878 | MS.gene020274:CDS |
GCTAGTTTGGCTATTCCTCA+AGG | 0.550812 | 7.4:+13834736 | MS.gene020274:CDS |
GGTCTGATTTCAAGAACTGA+AGG | 0.551947 | 7.4:-13834693 | None:intergenic |
CATTATAACATACTGCAAGC+TGG | 0.553063 | 7.4:-13840482 | None:intergenic |
GGAGCTCTACAGTTATCACT+TGG | 0.559216 | 7.4:+13835731 | MS.gene020274:CDS |
GTGACAGTTGAAGAAGCTGT+TGG | 0.562550 | 7.4:+13841009 | MS.gene020274:CDS |
CGGCTGTAAACTATAATGCT+GGG | 0.564721 | 7.4:+13839784 | MS.gene020274:CDS |
GGGTAGCTCAAGAGATTTGG+CGG | 0.564948 | 7.4:+13835592 | MS.gene020274:CDS |
TTACAAAGTCCAAGAATTGG+AGG | 0.565080 | 7.4:-13834787 | None:intergenic |
ATTAACTTCACGACCCAACA+TGG | 0.566438 | 7.4:-13835651 | None:intergenic |
GTAGCAAACATTGATACAAG+TGG | 0.567341 | 7.4:+13840726 | MS.gene020274:CDS |
GGCGGTTGGATCACTTCTGA+TGG | 0.568767 | 7.4:+13835625 | MS.gene020274:CDS |
ACCTGTTGTGAGGTAGCAAG+AGG | 0.576182 | 7.4:-13839632 | None:intergenic |
TACTGGTATAATAGCTCTTG+CGG | 0.580555 | 7.4:+13839399 | MS.gene020274:CDS |
AAGAACTGAAGGGTGTATTG+TGG | 0.580775 | 7.4:-13834682 | None:intergenic |
GTACCACTAGAGGAGTGTAA+TGG | 0.582301 | 7.4:-13839881 | None:intergenic |
TATGTTATAATGGATATGAC+TGG | 0.582466 | 7.4:+13840493 | MS.gene020274:CDS |
GCTGACACCCAAAAGAACCT+TGG | 0.585966 | 7.4:-13838418 | None:intergenic |
ATATAGGAAGGAATAGCAGT+GGG | 0.590491 | 7.4:+13839520 | MS.gene020274:intron |
TCTCAACGTTCATGCTTGAA+GGG | 0.600518 | 7.4:-13834489 | None:intergenic |
AGGAATAGCCAAACTAGCAA+TGG | 0.601613 | 7.4:-13834731 | None:intergenic |
AGATTTGGCGGTGGGAACTG+TGG | 0.603927 | 7.4:+13835604 | MS.gene020274:CDS |
CCGTTGGTCTATGCAATGAT+GGG | 0.604079 | 7.4:+13835572 | MS.gene020274:CDS |
CTTCTGATTCATCTTTCATG+GGG | 0.604828 | 7.4:-13841068 | None:intergenic |
TACAAAGTCCAAGAATTGGA+GGG | 0.610021 | 7.4:-13834786 | None:intergenic |
GTCTGATTTCAAGAACTGAA+GGG | 0.611105 | 7.4:-13834692 | None:intergenic |
AACACCAAATCTGTTGCTGA+AGG | 0.613704 | 7.4:-13839334 | None:intergenic |
TAGCTCGTTATGGTCAACCC+TGG | 0.617372 | 7.4:+13840919 | MS.gene020274:intron |
TAGCTCAAGAGATTTGGCGG+TGG | 0.618770 | 7.4:+13835595 | MS.gene020274:CDS |
TGAGAAGCATGGCGTTCAAG+TGG | 0.620130 | 7.4:+13838498 | MS.gene020274:CDS |
ATGCAAGCTATTTAAGAGAG+AGG | 0.620598 | 7.4:+13840328 | MS.gene020274:CDS |
CTAACTCACGCTGAGAAGCA+TGG | 0.621456 | 7.4:+13838487 | MS.gene020274:CDS |
CCCATCATTGCATAGACCAA+CGG | 0.628660 | 7.4:-13835572 | None:intergenic |
TTTGGCGGTGGGAACTGTGG+CGG | 0.630354 | 7.4:+13835607 | MS.gene020274:CDS |
AGAGGAGTGTAATGGAACAA+AGG | 0.634252 | 7.4:-13839873 | None:intergenic |
TTTGCATAACTAATGCCTTG+AGG | 0.635664 | 7.4:-13834751 | None:intergenic |
CTTCATGCTTGATACACACA+AGG | 0.636807 | 7.4:+13841041 | MS.gene020274:CDS |
AGAATGTAGCTGTAAAAGCA+AGG | 0.641166 | 7.4:-13835703 | None:intergenic |
GCTTGAAGAGTTCAAGAAGA+CGG | 0.642685 | 7.4:+13840758 | MS.gene020274:CDS |
TCCTCCCATGAACCCTACAA+TGG | 0.652638 | 7.4:-13836931 | None:intergenic |
TATATAGGAAGGAATAGCAG+TGG | 0.655223 | 7.4:+13839519 | MS.gene020274:intron |
GAACTGAAGGGTGTATTGTG+GGG | 0.656253 | 7.4:-13834680 | None:intergenic |
ATGGCTGCTAGTACCACTAG+AGG | 0.656764 | 7.4:-13839891 | None:intergenic |
AAAGTCCAAGAATTGGAGGG+AGG | 0.658649 | 7.4:-13834783 | None:intergenic |
CCCAATATAACTGACGTCAG+AGG | 0.662898 | 7.4:-13838448 | None:intergenic |
GCCATTGTAGGGTTCATGGG+AGG | 0.665601 | 7.4:+13836930 | MS.gene020274:CDS |
CAAAGTATCTTGTGACGAGG+AGG | 0.665912 | 7.4:-13837482 | None:intergenic |
CCCATGAAAGATGAATCAGA+AGG | 0.678795 | 7.4:+13841069 | MS.gene020274:CDS |
TTGTTGCAGGCAAACTACTG+TGG | 0.682819 | 7.4:-13836958 | None:intergenic |
AGAACCAACCAGCTTCAAGG+AGG | 0.688974 | 7.4:+13834614 | MS.gene020274:CDS |
GACAGAGCAAACGACAACCA+AGG | 0.690473 | 7.4:+13838401 | MS.gene020274:intron |
TTGTTCACAGGATCACAAGG+TGG | 0.690908 | 7.4:+13840419 | MS.gene020274:intron |
TTACAAAGTATCTTGTGACG+AGG | 0.710713 | 7.4:-13837485 | None:intergenic |
CGTTGAGAGTGTGCACCGTG+TGG | 0.712453 | 7.4:+13834504 | MS.gene020274:CDS |
ATCATTGCATAGACCAACGG+TGG | 0.721031 | 7.4:-13835569 | None:intergenic |
GATGTGGTGGTATAGCCACA+CGG | 0.743743 | 7.4:-13834519 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 13834466 | 13841107 | 13834466 | ID=MS.gene020274 |
chr7.4 | mRNA | 13834466 | 13841107 | 13834466 | ID=MS.gene020274.t1;Parent=MS.gene020274 |
chr7.4 | exon | 13834466 | 13834805 | 13834466 | ID=MS.gene020274.t1.exon1;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13834466 | 13834805 | 13834466 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13835555 | 13835762 | 13835555 | ID=MS.gene020274.t1.exon2;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13835555 | 13835762 | 13835555 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13836896 | 13837067 | 13836896 | ID=MS.gene020274.t1.exon3;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13836896 | 13837067 | 13836896 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13837438 | 13837503 | 13837438 | ID=MS.gene020274.t1.exon4;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13837438 | 13837503 | 13837438 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13838406 | 13838519 | 13838406 | ID=MS.gene020274.t1.exon5;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13838406 | 13838519 | 13838406 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13839304 | 13839420 | 13839304 | ID=MS.gene020274.t1.exon6;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13839304 | 13839420 | 13839304 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13839526 | 13839652 | 13839526 | ID=MS.gene020274.t1.exon7;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13839526 | 13839652 | 13839526 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13839769 | 13840055 | 13839769 | ID=MS.gene020274.t1.exon8;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13839769 | 13840055 | 13839769 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13840159 | 13840349 | 13840159 | ID=MS.gene020274.t1.exon9;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13840159 | 13840349 | 13840159 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13840429 | 13840514 | 13840429 | ID=MS.gene020274.t1.exon10;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13840429 | 13840514 | 13840429 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13840724 | 13840800 | 13840724 | ID=MS.gene020274.t1.exon11;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13840724 | 13840800 | 13840724 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
chr7.4 | exon | 13840922 | 13841107 | 13840922 | ID=MS.gene020274.t1.exon12;Parent=MS.gene020274.t1 |
chr7.4 | CDS | 13840922 | 13841107 | 13840922 | ID=cds.MS.gene020274.t1;Parent=MS.gene020274.t1 |
Gene Sequence |
Protein sequence |