Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052232.t1 | XP_003602002.1 | 97.6 | 654 | 16 | 0 | 1 | 654 | 1 | 654 | 0.00E+00 | 1228.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052232.t1 | O04722 | 67.0 | 627 | 206 | 1 | 24 | 649 | 46 | 672 | 4.5e-240 | 832.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052232.t1 | G7J4D0 | 97.6 | 654 | 16 | 0 | 1 | 654 | 1 | 654 | 0.0e+00 | 1228.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052232 | MS.gene75452 | 0.991729 | 3.19E-189 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052232.t1 | MTR_3g087740 | 97.554 | 654 | 16 | 0 | 1 | 654 | 1 | 654 | 0.0 | 1297 |
MS.gene052232.t1 | MTR_5g061860 | 62.519 | 651 | 233 | 5 | 12 | 653 | 2 | 650 | 0.0 | 835 |
MS.gene052232.t1 | MTR_3g073730 | 62.404 | 649 | 232 | 4 | 12 | 654 | 15 | 657 | 0.0 | 815 |
MS.gene052232.t1 | MTR_5g061860 | 64.738 | 553 | 187 | 3 | 12 | 556 | 2 | 554 | 0.0 | 735 |
MS.gene052232.t1 | MTR_3g087730 | 54.154 | 650 | 280 | 7 | 13 | 651 | 12 | 654 | 0.0 | 705 |
MS.gene052232.t1 | MTR_5g061880 | 55.705 | 596 | 257 | 4 | 57 | 649 | 56 | 647 | 0.0 | 690 |
MS.gene052232.t1 | MTR_3g073780 | 56.208 | 596 | 255 | 4 | 57 | 649 | 59 | 651 | 0.0 | 663 |
MS.gene052232.t1 | MTR_2g008470 | 52.951 | 593 | 275 | 4 | 57 | 648 | 61 | 650 | 0.0 | 611 |
MS.gene052232.t1 | MTR_2g008470 | 52.951 | 593 | 275 | 4 | 57 | 648 | 80 | 669 | 0.0 | 611 |
MS.gene052232.t1 | MTR_3g073780 | 56.955 | 532 | 224 | 3 | 57 | 586 | 59 | 587 | 0.0 | 608 |
MS.gene052232.t1 | MTR_3g073780 | 58.367 | 502 | 206 | 2 | 57 | 556 | 59 | 559 | 0.0 | 590 |
MS.gene052232.t1 | MTR_2g102243 | 47.249 | 618 | 319 | 5 | 40 | 653 | 29 | 643 | 0.0 | 580 |
MS.gene052232.t1 | MTR_4g011970 | 46.799 | 656 | 336 | 7 | 1 | 652 | 3 | 649 | 0.0 | 577 |
MS.gene052232.t1 | MTR_7g095430 | 47.557 | 614 | 315 | 5 | 40 | 649 | 24 | 634 | 0.0 | 573 |
MS.gene052232.t1 | MTR_1g071530 | 47.326 | 617 | 317 | 5 | 37 | 650 | 27 | 638 | 0.0 | 567 |
MS.gene052232.t1 | MTR_2g102243 | 48.029 | 558 | 282 | 5 | 40 | 592 | 29 | 583 | 0.0 | 538 |
MS.gene052232.t1 | MTR_4g084620 | 46.181 | 576 | 303 | 4 | 79 | 652 | 66 | 636 | 0.0 | 534 |
MS.gene052232.t1 | MTR_4g084640 | 42.337 | 659 | 346 | 8 | 2 | 651 | 5 | 638 | 1.31e-180 | 528 |
MS.gene052232.t1 | MTR_7g095430 | 47.455 | 550 | 283 | 4 | 40 | 586 | 24 | 570 | 3.26e-177 | 516 |
MS.gene052232.t1 | MTR_6g086170 | 42.978 | 591 | 327 | 5 | 62 | 650 | 42 | 624 | 3.56e-168 | 495 |
MS.gene052232.t1 | MTR_7g022870 | 34.950 | 598 | 367 | 10 | 59 | 649 | 54 | 636 | 5.10e-108 | 342 |
MS.gene052232.t1 | MTR_7g022870 | 35.581 | 534 | 323 | 9 | 59 | 586 | 54 | 572 | 7.81e-98 | 311 |
MS.gene052232.t1 | MTR_6g024420 | 47.191 | 89 | 36 | 1 | 277 | 365 | 89 | 166 | 3.40e-18 | 82.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052232.t1 | AT5G10180 | 67.038 | 628 | 206 | 1 | 23 | 649 | 45 | 672 | 0.0 | 875 |
MS.gene052232.t1 | AT1G77990 | 60.380 | 631 | 247 | 2 | 19 | 646 | 33 | 663 | 0.0 | 786 |
MS.gene052232.t1 | AT4G08620 | 56.131 | 579 | 251 | 3 | 75 | 652 | 67 | 643 | 0.0 | 647 |
MS.gene052232.t1 | AT1G22150 | 54.195 | 596 | 270 | 3 | 55 | 649 | 55 | 648 | 0.0 | 637 |
MS.gene052232.t1 | AT1G22150 | 54.195 | 596 | 270 | 3 | 55 | 649 | 55 | 648 | 0.0 | 637 |
MS.gene052232.t1 | AT1G22150 | 54.195 | 596 | 270 | 3 | 55 | 649 | 55 | 648 | 0.0 | 637 |
MS.gene052232.t1 | AT1G78000 | 54.195 | 596 | 270 | 3 | 55 | 649 | 52 | 645 | 0.0 | 620 |
MS.gene052232.t1 | AT1G78000 | 54.195 | 596 | 270 | 3 | 55 | 649 | 52 | 645 | 0.0 | 620 |
MS.gene052232.t1 | AT1G78000 | 54.195 | 596 | 270 | 3 | 55 | 649 | 52 | 645 | 0.0 | 620 |
MS.gene052232.t1 | AT1G78000 | 54.659 | 558 | 251 | 2 | 55 | 612 | 52 | 607 | 0.0 | 591 |
MS.gene052232.t1 | AT3G51895 | 46.720 | 625 | 327 | 5 | 27 | 649 | 62 | 682 | 0.0 | 583 |
MS.gene052232.t1 | AT3G51895 | 46.203 | 632 | 334 | 5 | 20 | 649 | 10 | 637 | 0.0 | 583 |
MS.gene052232.t1 | AT1G22150 | 54.511 | 532 | 240 | 2 | 55 | 586 | 55 | 584 | 0.0 | 578 |
MS.gene052232.t1 | AT1G78000 | 54.953 | 535 | 239 | 2 | 55 | 589 | 52 | 584 | 0.0 | 569 |
MS.gene052232.t1 | AT3G15990 | 46.677 | 617 | 320 | 6 | 40 | 651 | 33 | 645 | 0.0 | 566 |
MS.gene052232.t1 | AT1G23090 | 45.118 | 594 | 321 | 4 | 57 | 648 | 30 | 620 | 0.0 | 535 |
MS.gene052232.t1 | AT4G02700 | 44.677 | 620 | 328 | 8 | 37 | 649 | 16 | 627 | 3.96e-179 | 524 |
MS.gene052232.t1 | AT1G78000 | 57.883 | 444 | 187 | 0 | 55 | 498 | 52 | 495 | 2.01e-171 | 499 |
MS.gene052232.t1 | AT5G19600 | 42.169 | 581 | 321 | 6 | 74 | 652 | 59 | 626 | 5.45e-164 | 484 |
MS.gene052232.t1 | AT1G78000 | 54.767 | 451 | 202 | 2 | 139 | 589 | 1 | 449 | 1.92e-160 | 469 |
MS.gene052232.t1 | AT1G23090 | 44.196 | 491 | 269 | 4 | 160 | 648 | 1 | 488 | 2.63e-145 | 432 |
MS.gene052232.t1 | AT1G23090 | 44.196 | 491 | 269 | 4 | 160 | 648 | 1 | 488 | 2.63e-145 | 432 |
MS.gene052232.t1 | AT1G23090 | 44.196 | 491 | 269 | 4 | 160 | 648 | 1 | 488 | 2.63e-145 | 432 |
MS.gene052232.t1 | AT3G12520 | 36.082 | 582 | 350 | 10 | 75 | 649 | 47 | 613 | 2.97e-111 | 349 |
MS.gene052232.t1 | AT3G12520 | 36.082 | 582 | 350 | 10 | 75 | 649 | 63 | 629 | 3.74e-111 | 349 |
MS.gene052232.t1 | AT5G13550 | 36.088 | 593 | 343 | 13 | 71 | 649 | 72 | 642 | 8.65e-105 | 333 |
MS.gene052232.t1 | AT3G12520 | 37.090 | 488 | 286 | 9 | 75 | 556 | 63 | 535 | 3.42e-95 | 303 |
Find 138 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTATAGATGTTGCCAAAAT+TGG | 0.147839 | 3.2:+74822139 | MS.gene052232:CDS |
TAAATGAAGCTTACAAAATT+TGG | 0.156014 | 3.2:+74824676 | MS.gene052232:CDS |
ATACCTTTCTTTAACGAAAT+TGG | 0.161463 | 3.2:-74827414 | None:intergenic |
CATCCTAACTACTAGATTTC+TGG | 0.176456 | 3.2:+74821847 | MS.gene052232:CDS |
AGCAACAATAAGTCCAATTT+TGG | 0.188347 | 3.2:-74822152 | None:intergenic |
AAAGGAAGAAGAACCTATTT+TGG | 0.251709 | 3.2:+74821963 | MS.gene052232:CDS |
CAATTGATGCCAACCAAAAT+AGG | 0.258456 | 3.2:-74821976 | None:intergenic |
AAAATTGTGAAACATGTTAA+AGG | 0.263404 | 3.2:+74822067 | MS.gene052232:CDS |
GCTTGTGCTGGTGCCTTCTT+TGG | 0.265451 | 3.2:+74824723 | MS.gene052232:CDS |
TCAAACTTTGTCAACAAAAT+AGG | 0.270223 | 3.2:+74828285 | MS.gene052232:CDS |
AATTTATACTGCAGGGTAAA+AGG | 0.270631 | 3.2:+74821945 | MS.gene052232:intron |
GGTATCTTTCAAACTTCCTT+TGG | 0.278546 | 3.2:+74820617 | MS.gene052232:CDS |
CTGTCACATGCTGCAATTGT+TGG | 0.291169 | 3.2:+74820773 | MS.gene052232:CDS |
GACAGAGATTATGTCTGTTT+TGG | 0.295111 | 3.2:-74820870 | None:intergenic |
CTCTGTCTTGAAAGCTGTTT+GGG | 0.295702 | 3.2:+74820886 | MS.gene052232:CDS |
TTTCTTGCAACTCTCTTTGC+TGG | 0.296098 | 3.2:+74820596 | MS.gene052232:CDS |
ATCAAATGGGTCACTCAAAA+AGG | 0.303980 | 3.2:+74827536 | MS.gene052232:CDS |
CACCTCCGGAATTGCTTCTA+TGG | 0.307560 | 3.2:+74827930 | MS.gene052232:CDS |
TATCCTGGGAGGCTCATTCT+TGG | 0.312035 | 3.2:+74821820 | MS.gene052232:CDS |
GCAAACCTTGCTCCTCAATA+TGG | 0.318170 | 3.2:+74820231 | MS.gene052232:CDS |
CGACCAAGCACAGAAACTTT+AGG | 0.318996 | 3.2:+74827278 | MS.gene052232:CDS |
AAACTTCCTTTGGACTATTC+AGG | 0.330923 | 3.2:+74820627 | MS.gene052232:CDS |
ATCAAGTTGGTATCCTTTGA+TGG | 0.351175 | 3.2:-74822416 | None:intergenic |
CAACAGTTGAAGGGACTGTT+TGG | 0.351591 | 3.2:+74820830 | MS.gene052232:CDS |
AAATTGTGAAACATGTTAAA+GGG | 0.359971 | 3.2:+74822068 | MS.gene052232:CDS |
TCTCTGTCTTGAAAGCTGTT+TGG | 0.360550 | 3.2:+74820885 | MS.gene052232:CDS |
CTATTTGCTTCTGTGGAGAT+TGG | 0.361323 | 3.2:+74824750 | MS.gene052232:CDS |
CTTGACTTTCTTGCTTGTGC+TGG | 0.369935 | 3.2:+74824711 | MS.gene052232:CDS |
TCATTTCAAGGATCATCAAA+TGG | 0.381535 | 3.2:+74827522 | MS.gene052232:intron |
GCTACACTGTTGCTAAGTTT+AGG | 0.382970 | 3.2:+74819939 | MS.gene052232:CDS |
CCTATGGCAATTCAGATTCC+CGG | 0.385176 | 3.2:+74827344 | MS.gene052232:CDS |
TTCGTTGCTGTTATCATCAA+TGG | 0.386524 | 3.2:+74820520 | MS.gene052232:CDS |
TAACCAATTGGATCAGTAGA+AGG | 0.387370 | 3.2:-74820560 | None:intergenic |
GTTAAAGTCTAACTGATTGA+TGG | 0.387724 | 3.2:-74822107 | None:intergenic |
CCGCTTATCTACGCTGTAAT+GGG | 0.390859 | 3.2:+74820458 | MS.gene052232:CDS |
TTCCTCCATAGAAGCAATTC+CGG | 0.396969 | 3.2:-74827935 | None:intergenic |
GAAACTTTAGGAAAACTTCC+TGG | 0.399741 | 3.2:+74827290 | MS.gene052232:CDS |
TGCTAGTCTTTGTATTCCTC+AGG | 0.401203 | 3.2:+74819988 | MS.gene052232:CDS |
ATGAGCTTTGTATAACCAAT+TGG | 0.401366 | 3.2:-74820572 | None:intergenic |
ATCAAAGGATACCAACTTGA+TGG | 0.406300 | 3.2:+74822418 | MS.gene052232:CDS |
TTTCCTAAAGTTTCTGTGCT+TGG | 0.410600 | 3.2:-74827281 | None:intergenic |
AAGTGATATCATCACTGTTA+TGG | 0.416628 | 3.2:-74824568 | None:intergenic |
ACCTCCTGCTATGTTGCAAC+TGG | 0.423328 | 3.2:+74822490 | MS.gene052232:CDS |
TCTAACTGATTGATGGAACT+TGG | 0.427366 | 3.2:-74822100 | None:intergenic |
TCACCAGAAATCTAGTAGTT+AGG | 0.428939 | 3.2:-74821850 | None:intergenic |
CTTCTGCCCCAAACAAGAAT+AGG | 0.441826 | 3.2:-74819917 | None:intergenic |
CAATATGACTTCTTCAACAG+TGG | 0.450224 | 3.2:+74819676 | None:intergenic |
GTGATTCTCTCTGCATTACC+TGG | 0.450525 | 3.2:+74824642 | MS.gene052232:CDS |
ACTGAAGCAATAATAGCAAT+TGG | 0.451582 | 3.2:-74824621 | None:intergenic |
TCACAGAACAGATCGGTTCC+AGG | 0.455205 | 3.2:-74827308 | None:intergenic |
ATGCCAATTTCGTTAAAGAA+AGG | 0.460508 | 3.2:+74827411 | MS.gene052232:CDS |
ACCGCTTATCTACGCTGTAA+TGG | 0.465139 | 3.2:+74820457 | MS.gene052232:CDS |
CTGCATATCCTCAAAGGTGC+AGG | 0.468675 | 3.2:-74819702 | None:intergenic |
CAGCCACATGCCAAGGACTT+GGG | 0.470723 | 3.2:-74819790 | None:intergenic |
AACAAAGAGATGATGTCAAT+AGG | 0.476714 | 3.2:+74822442 | MS.gene052232:CDS |
AGCAAATAGTACACCAAAGA+AGG | 0.478871 | 3.2:-74824736 | None:intergenic |
ACATCAAGAGAAATAGCAAT+TGG | 0.480431 | 3.2:+74820482 | MS.gene052232:CDS |
ACAGCCACATGCCAAGGACT+TGG | 0.481415 | 3.2:-74819791 | None:intergenic |
GCAATTGTTGGATTTGTAGC+AGG | 0.489329 | 3.2:+74820785 | MS.gene052232:CDS |
CCTCCCAGGATAAAATTATG+AGG | 0.494655 | 3.2:-74821809 | None:intergenic |
CATTTCAAGGATCATCAAAT+GGG | 0.494851 | 3.2:+74827523 | MS.gene052232:intron |
AGAATGTTCAGCAGGATGTA+AGG | 0.495220 | 3.2:+74819738 | MS.gene052232:CDS |
CTATGGCAATTCAGATTCCC+GGG | 0.499013 | 3.2:+74827345 | MS.gene052232:CDS |
AGCAATTGGTCCTGTGGCAG+TGG | 0.499663 | 3.2:+74820496 | MS.gene052232:CDS |
TTTGGCAACATCTATAACAT+GGG | 0.501179 | 3.2:-74822134 | None:intergenic |
GACCCTTCTACTGATCCAAT+TGG | 0.501614 | 3.2:+74820557 | MS.gene052232:CDS |
GCAGGAGCTGCCATTGTGAT+TGG | 0.504037 | 3.2:+74820803 | MS.gene052232:CDS |
TGGTGTACTATTTGCTTCTG+TGG | 0.508569 | 3.2:+74824743 | MS.gene052232:CDS |
ACAGCTGTTAATTATGCTGC+TGG | 0.510483 | 3.2:+74824513 | MS.gene052232:CDS |
CATGTTTCAATGTAGAGCAT+AGG | 0.511277 | 3.2:+74820195 | MS.gene052232:intron |
AGTGGAACCCTGCACCTTTG+AGG | 0.512094 | 3.2:+74819694 | MS.gene052232:CDS |
TTATAGGAATCTGTTGCTGT+TGG | 0.512660 | 3.2:+74822379 | MS.gene052232:intron |
TCTCTTTGTTTCCATCAAGT+TGG | 0.512891 | 3.2:-74822429 | None:intergenic |
ATAGGCTTCACAAACATCAT+AGG | 0.513032 | 3.2:+74822460 | MS.gene052232:CDS |
CCTTGAGAAGAATGTTCAGC+AGG | 0.521003 | 3.2:+74819730 | MS.gene052232:CDS |
TTTAATATCAAACATTGTGA+TGG | 0.523087 | 3.2:+74824545 | MS.gene052232:CDS |
TCATTTATGTCTATGAGTCC+AGG | 0.523123 | 3.2:-74824660 | None:intergenic |
GATGACAAGGGAAATTCAAA+AGG | 0.524692 | 3.2:+74827566 | MS.gene052232:CDS |
CTGCACCTTTGAGGATATGC+AGG | 0.529377 | 3.2:+74819703 | MS.gene052232:CDS |
GATTGGTCTTCAACAGTTGA+AGG | 0.534417 | 3.2:+74820820 | MS.gene052232:CDS |
TTTGTCTACACATGGAAAGC+AGG | 0.534478 | 3.2:+74827969 | MS.gene052232:CDS |
ACACCAAGAATGAGCCTCCC+AGG | 0.537266 | 3.2:-74821823 | None:intergenic |
TAACAGGTTGGGGTTCCTTG+TGG | 0.537909 | 3.2:+74820745 | MS.gene052232:intron |
ATGTGGCTGTAGATTCTTTG+AGG | 0.539831 | 3.2:+74819804 | MS.gene052232:CDS |
TTGTGTATCACTTGCCACCT+CGG | 0.540238 | 3.2:-74828252 | None:intergenic |
AGTACCAGTTGCAACATAGC+AGG | 0.544189 | 3.2:-74822494 | None:intergenic |
TGAAGCTTACAAAATTTGGA+AGG | 0.547138 | 3.2:+74824680 | MS.gene052232:CDS |
AGCAACGAAACCACTGCCAC+AGG | 0.553209 | 3.2:-74820506 | None:intergenic |
GAATCTACAGCCACATGCCA+AGG | 0.554742 | 3.2:-74819797 | None:intergenic |
CAACCTGCAAAACTGAAAGT+AGG | 0.562947 | 3.2:-74819889 | None:intergenic |
AAAGTCCATATTGAGGAGCA+AGG | 0.564726 | 3.2:-74820236 | None:intergenic |
AGCCACATGCCAAGGACTTG+GGG | 0.565471 | 3.2:-74819789 | None:intergenic |
AAAAGGATTGGAAGATGACA+AGG | 0.575608 | 3.2:+74827553 | MS.gene052232:CDS |
AATTGTGAAACATGTTAAAG+GGG | 0.579312 | 3.2:+74822069 | MS.gene052232:CDS |
AGCTTACAAAGTCCATATTG+AGG | 0.583569 | 3.2:-74820243 | None:intergenic |
TACAAATGTTTGTCTACACA+TGG | 0.587075 | 3.2:+74827961 | MS.gene052232:CDS |
TTGCCACCTCGGATTTGCAA+TGG | 0.587105 | 3.2:-74828241 | None:intergenic |
GCAAGTGATACACAAGCTAA+AGG | 0.587263 | 3.2:+74828260 | MS.gene052232:CDS |
GTCAAGAATGACAAGTTGAA+TGG | 0.587521 | 3.2:-74827591 | None:intergenic |
ATACAGATTATCATAACCCC+GGG | 0.588485 | 3.2:-74827362 | None:intergenic |
CCTGCTGAACATTCTTCTCA+AGG | 0.592117 | 3.2:-74819730 | None:intergenic |
CCGGGAATCTGAATTGCCAT+AGG | 0.592416 | 3.2:-74827344 | None:intergenic |
TGTGGAGATTGGTCTTCTAG+TGG | 0.595857 | 3.2:+74824761 | MS.gene052232:CDS |
CATACAGATTATCATAACCC+CGG | 0.597270 | 3.2:-74827363 | None:intergenic |
TAATGATTTACTCACAGTAA+GGG | 0.597465 | 3.2:-74822182 | None:intergenic |
GCAGGATGTAAGGTCTCAGT+GGG | 0.600047 | 3.2:+74819748 | MS.gene052232:CDS |
TTGGTGAACATTGACACCTC+CGG | 0.600078 | 3.2:+74827916 | MS.gene052232:CDS |
ATTGGTCTTCAACAGTTGAA+GGG | 0.601705 | 3.2:+74820821 | MS.gene052232:CDS |
GTCCACCTGCATATCCTCAA+AGG | 0.606805 | 3.2:-74819708 | None:intergenic |
GAGCATAGGATATGCAACAT+TGG | 0.607902 | 3.2:+74820209 | MS.gene052232:intron |
TGATGTTGATCAGTATCCTA+TGG | 0.611939 | 3.2:+74827328 | MS.gene052232:CDS |
AACCAATTGGATCAGTAGAA+GGG | 0.611963 | 3.2:-74820559 | None:intergenic |
GACAATATAACTGATACAAG+TGG | 0.621918 | 3.2:-74822001 | None:intergenic |
CCCATTACAGCGTAGATAAG+CGG | 0.624118 | 3.2:-74820458 | None:intergenic |
AGAAATAGCAATTGGTCCTG+TGG | 0.627791 | 3.2:+74820490 | MS.gene052232:CDS |
CTCCGGAATTGCTTCTATGG+AGG | 0.630529 | 3.2:+74827933 | MS.gene052232:CDS |
TGCATATCCTCAAAGGTGCA+GGG | 0.631006 | 3.2:-74819701 | None:intergenic |
CTCCCAGGATAAAATTATGA+GGG | 0.631885 | 3.2:-74821808 | None:intergenic |
CACCTTTGAGGATATGCAGG+TGG | 0.639656 | 3.2:+74819706 | MS.gene052232:CDS |
TACAAAGACTAGCAATAGTG+AGG | 0.640532 | 3.2:-74819979 | None:intergenic |
GCCACATGCCAAGGACTTGG+GGG | 0.642052 | 3.2:-74819788 | None:intergenic |
AACTTTGTCAACAAAATAGG+TGG | 0.642212 | 3.2:+74828288 | MS.gene052232:CDS |
AGTTGGCCATTGCAAATCCG+AGG | 0.642668 | 3.2:+74828235 | MS.gene052232:intron |
TTGGCAACATCTATAACATG+GGG | 0.647480 | 3.2:-74822133 | None:intergenic |
GGAGATTGGTCTTCTAGTGG+CGG | 0.651104 | 3.2:+74824764 | MS.gene052232:CDS |
AGCAGGATGTAAGGTCTCAG+TGG | 0.652010 | 3.2:+74819747 | MS.gene052232:CDS |
TCTCTAAGTGATCAATCATG+TGG | 0.653134 | 3.2:+74819860 | MS.gene052232:CDS |
ATCAACATCACAGAACAGAT+CGG | 0.657581 | 3.2:-74827315 | None:intergenic |
CTCCATAGAAGCAATTCCGG+AGG | 0.672446 | 3.2:-74827932 | None:intergenic |
ACCAGTTGCAACATAGCAGG+AGG | 0.674997 | 3.2:-74822491 | None:intergenic |
CCACATGCCAAGGACTTGGG+GGG | 0.677369 | 3.2:-74819787 | None:intergenic |
ATTGTGAAACATGTTAAAGG+GGG | 0.682427 | 3.2:+74822070 | MS.gene052232:CDS |
TGGCCATTGCAAATCCGAGG+TGG | 0.687093 | 3.2:+74828238 | MS.gene052232:CDS |
TATGGCAATTCAGATTCCCG+GGG | 0.688950 | 3.2:+74827346 | MS.gene052232:CDS |
AAAGGATTGGAAGATGACAA+GGG | 0.694432 | 3.2:+74827554 | MS.gene052232:CDS |
ATTACAGCGTAGATAAGCGG+TGG | 0.699477 | 3.2:-74820455 | None:intergenic |
CATGTGACAGAAAATCCACA+AGG | 0.704335 | 3.2:-74820760 | None:intergenic |
CTGTTGAAGACCAATCACAA+TGG | 0.727102 | 3.2:-74820813 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 74819680 | 74828368 | 74819680 | ID=MS.gene052232 |
chr3.2 | mRNA | 74819680 | 74828368 | 74819680 | ID=MS.gene052232.t1;Parent=MS.gene052232 |
chr3.2 | exon | 74819680 | 74820009 | 74819680 | ID=MS.gene052232.t1.exon1;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74819680 | 74820009 | 74819680 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74820210 | 74820258 | 74820210 | ID=MS.gene052232.t1.exon2;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74820210 | 74820258 | 74820210 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74820441 | 74820648 | 74820441 | ID=MS.gene052232.t1.exon3;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74820441 | 74820648 | 74820441 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74820751 | 74820925 | 74820751 | ID=MS.gene052232.t1.exon4;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74820751 | 74820925 | 74820751 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74821803 | 74821868 | 74821803 | ID=MS.gene052232.t1.exon5;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74821803 | 74821868 | 74821803 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74821959 | 74822189 | 74821959 | ID=MS.gene052232.t1.exon6;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74821959 | 74822189 | 74821959 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74822385 | 74822511 | 74822385 | ID=MS.gene052232.t1.exon7;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74822385 | 74822511 | 74822385 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74824499 | 74824785 | 74824499 | ID=MS.gene052232.t1.exon8;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74824499 | 74824785 | 74824499 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74827239 | 74827432 | 74827239 | ID=MS.gene052232.t1.exon9;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74827239 | 74827432 | 74827239 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74827532 | 74827620 | 74827532 | ID=MS.gene052232.t1.exon10;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74827532 | 74827620 | 74827532 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74827914 | 74827990 | 74827914 | ID=MS.gene052232.t1.exon11;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74827914 | 74827990 | 74827914 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
chr3.2 | exon | 74828237 | 74828368 | 74828237 | ID=MS.gene052232.t1.exon12;Parent=MS.gene052232.t1 |
chr3.2 | CDS | 74828237 | 74828368 | 74828237 | ID=cds.MS.gene052232.t1;Parent=MS.gene052232.t1 |
Gene Sequence |
Protein sequence |