Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92478.t1 | XP_003621787.2 | 98.9 | 706 | 8 | 0 | 1 | 706 | 1 | 706 | 0.00E+00 | 1295.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92478.t1 | Q9FY46 | 73.5 | 637 | 167 | 1 | 8 | 642 | 12 | 648 | 1.3e-264 | 913.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92478.t1 | G7KVN8 | 98.9 | 706 | 8 | 0 | 1 | 706 | 1 | 706 | 0.0e+00 | 1295.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92478.t1 | MTR_7g022870 | 98.867 | 706 | 8 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1412 |
MS.gene92478.t1 | MTR_7g022870 | 98.774 | 571 | 7 | 0 | 1 | 571 | 1 | 571 | 0.0 | 1134 |
MS.gene92478.t1 | MTR_5g061880 | 38.136 | 590 | 352 | 8 | 57 | 636 | 61 | 647 | 1.44e-135 | 414 |
MS.gene92478.t1 | MTR_3g073780 | 39.100 | 578 | 338 | 7 | 70 | 636 | 77 | 651 | 1.08e-128 | 396 |
MS.gene92478.t1 | MTR_2g008470 | 37.819 | 587 | 355 | 7 | 55 | 633 | 64 | 648 | 2.83e-125 | 387 |
MS.gene92478.t1 | MTR_2g008470 | 37.819 | 587 | 355 | 7 | 55 | 633 | 83 | 667 | 5.31e-125 | 387 |
MS.gene92478.t1 | MTR_1g071530 | 34.537 | 637 | 399 | 10 | 14 | 636 | 5 | 637 | 3.20e-120 | 374 |
MS.gene92478.t1 | MTR_4g084640 | 36.968 | 587 | 354 | 9 | 71 | 647 | 67 | 647 | 2.56e-119 | 372 |
MS.gene92478.t1 | MTR_6g086170 | 35.195 | 591 | 369 | 9 | 67 | 649 | 52 | 636 | 9.73e-119 | 370 |
MS.gene92478.t1 | MTR_7g095430 | 35.499 | 631 | 389 | 11 | 19 | 636 | 9 | 634 | 8.23e-118 | 368 |
MS.gene92478.t1 | MTR_4g084620 | 34.841 | 597 | 364 | 10 | 71 | 652 | 63 | 649 | 1.61e-117 | 367 |
MS.gene92478.t1 | MTR_2g102243 | 34.848 | 594 | 373 | 7 | 50 | 633 | 47 | 636 | 3.93e-115 | 360 |
MS.gene92478.t1 | MTR_4g011970 | 34.768 | 604 | 360 | 11 | 50 | 633 | 54 | 643 | 2.05e-114 | 359 |
MS.gene92478.t1 | MTR_3g073780 | 40.156 | 513 | 293 | 7 | 70 | 571 | 77 | 586 | 4.84e-114 | 356 |
MS.gene92478.t1 | MTR_5g061860 | 34.578 | 616 | 378 | 10 | 42 | 637 | 37 | 647 | 1.45e-112 | 354 |
MS.gene92478.t1 | MTR_3g073780 | 40.909 | 484 | 274 | 6 | 70 | 542 | 77 | 559 | 9.77e-110 | 343 |
MS.gene92478.t1 | MTR_3g073730 | 36.014 | 572 | 347 | 9 | 83 | 639 | 88 | 655 | 6.40e-109 | 345 |
MS.gene92478.t1 | MTR_3g087740 | 35.176 | 597 | 365 | 10 | 55 | 636 | 60 | 649 | 8.52e-109 | 344 |
MS.gene92478.t1 | MTR_2g102243 | 35.754 | 537 | 331 | 7 | 50 | 576 | 47 | 579 | 1.87e-105 | 333 |
MS.gene92478.t1 | MTR_7g095430 | 36.283 | 565 | 342 | 11 | 19 | 570 | 9 | 568 | 2.89e-102 | 325 |
MS.gene92478.t1 | MTR_5g061860 | 35.645 | 519 | 315 | 8 | 42 | 542 | 37 | 554 | 5.71e-96 | 308 |
MS.gene92478.t1 | MTR_3g087730 | 31.633 | 588 | 378 | 11 | 70 | 637 | 70 | 653 | 1.93e-92 | 301 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92478.t1 | AT5G13550 | 76.661 | 617 | 144 | 0 | 26 | 642 | 32 | 648 | 0.0 | 972 |
MS.gene92478.t1 | AT3G12520 | 68.625 | 698 | 194 | 5 | 12 | 706 | 2 | 677 | 0.0 | 951 |
MS.gene92478.t1 | AT3G12520 | 69.809 | 679 | 182 | 4 | 29 | 706 | 5 | 661 | 0.0 | 948 |
MS.gene92478.t1 | AT3G12520 | 73.034 | 534 | 141 | 2 | 12 | 542 | 2 | 535 | 0.0 | 785 |
MS.gene92478.t1 | AT4G08620 | 40.345 | 580 | 335 | 7 | 70 | 640 | 67 | 644 | 3.18e-131 | 402 |
MS.gene92478.t1 | AT3G51895 | 35.341 | 631 | 391 | 11 | 33 | 649 | 25 | 652 | 6.43e-126 | 389 |
MS.gene92478.t1 | AT3G51895 | 35.341 | 631 | 391 | 11 | 33 | 649 | 70 | 697 | 1.12e-125 | 390 |
MS.gene92478.t1 | AT1G22150 | 38.280 | 593 | 353 | 9 | 54 | 636 | 59 | 648 | 5.29e-123 | 381 |
MS.gene92478.t1 | AT1G22150 | 38.280 | 593 | 353 | 9 | 54 | 636 | 59 | 648 | 5.29e-123 | 381 |
MS.gene92478.t1 | AT1G22150 | 38.280 | 593 | 353 | 9 | 54 | 636 | 59 | 648 | 5.29e-123 | 381 |
MS.gene92478.t1 | AT4G02700 | 35.945 | 587 | 364 | 8 | 70 | 647 | 55 | 638 | 4.75e-120 | 373 |
MS.gene92478.t1 | AT1G78000 | 38.200 | 589 | 353 | 7 | 57 | 636 | 59 | 645 | 1.15e-117 | 367 |
MS.gene92478.t1 | AT1G78000 | 38.200 | 589 | 353 | 7 | 57 | 636 | 59 | 645 | 1.15e-117 | 367 |
MS.gene92478.t1 | AT1G78000 | 38.200 | 589 | 353 | 7 | 57 | 636 | 59 | 645 | 1.15e-117 | 367 |
MS.gene92478.t1 | AT1G23090 | 33.895 | 593 | 381 | 8 | 50 | 633 | 28 | 618 | 1.37e-115 | 361 |
MS.gene92478.t1 | AT3G15990 | 35.343 | 597 | 366 | 11 | 50 | 633 | 51 | 640 | 3.88e-113 | 355 |
MS.gene92478.t1 | AT5G19600 | 34.530 | 585 | 366 | 8 | 68 | 645 | 58 | 632 | 3.71e-110 | 347 |
MS.gene92478.t1 | AT1G78000 | 39.020 | 551 | 325 | 7 | 57 | 598 | 59 | 607 | 4.20e-109 | 344 |
MS.gene92478.t1 | AT5G10180 | 35.605 | 587 | 355 | 11 | 67 | 637 | 94 | 673 | 9.17e-108 | 342 |
MS.gene92478.t1 | AT1G77990 | 36.585 | 574 | 349 | 11 | 75 | 635 | 94 | 665 | 5.92e-105 | 335 |
MS.gene92478.t1 | AT1G22150 | 37.879 | 528 | 315 | 9 | 54 | 571 | 59 | 583 | 8.81e-102 | 324 |
MS.gene92478.t1 | AT1G78000 | 38.168 | 524 | 313 | 7 | 57 | 571 | 59 | 580 | 1.10e-96 | 311 |
MS.gene92478.t1 | AT1G23090 | 33.333 | 474 | 308 | 6 | 167 | 633 | 14 | 486 | 2.64e-89 | 288 |
MS.gene92478.t1 | AT1G23090 | 33.333 | 474 | 308 | 6 | 167 | 633 | 14 | 486 | 2.64e-89 | 288 |
MS.gene92478.t1 | AT1G23090 | 33.333 | 474 | 308 | 6 | 167 | 633 | 14 | 486 | 2.64e-89 | 288 |
MS.gene92478.t1 | AT1G78000 | 38.427 | 445 | 264 | 6 | 136 | 571 | 2 | 445 | 3.70e-76 | 253 |
MS.gene92478.t1 | AT1G78000 | 38.657 | 432 | 255 | 6 | 57 | 479 | 59 | 489 | 1.10e-70 | 239 |
Find 160 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTCTTGGAACAGAAAATT+TGG | 0.155451 | 7.3:-76795903 | None:intergenic |
ATATTTGTGTATGCCATATT+TGG | 0.196386 | 7.3:+76793339 | MS.gene92478:CDS |
AAGAAAAGCAGTTGGAATTA+AGG | 0.197671 | 7.3:-76795942 | None:intergenic |
AAATATGGCATACACAAATA+TGG | 0.229976 | 7.3:-76793337 | None:intergenic |
CTTGGTGTTTCCAATGTTCT+TGG | 0.234908 | 7.3:+76796507 | MS.gene92478:CDS |
CCCTCTTACAGCAGTAGTTT+TGG | 0.235000 | 7.3:+76794902 | MS.gene92478:CDS |
CTATTGGTGTCTAATGTTCT+TGG | 0.257787 | 7.3:+76793405 | MS.gene92478:CDS |
GGCAATTCTACTGGCTCTTA+TGG | 0.265596 | 7.3:+76793467 | MS.gene92478:CDS |
GTGTTGTGCTGCAGCTGTTT+TGG | 0.266171 | 7.3:+76798649 | MS.gene92478:intron |
GGAGTATCCGCAATAGTTTC+AGG | 0.283201 | 7.3:+76796756 | MS.gene92478:CDS |
GACAAAGTAAGCAGAATATC+TGG | 0.285380 | 7.3:-76799700 | None:intergenic |
GCTGGACTTCAACCGATATA+TGG | 0.294692 | 7.3:+76792179 | MS.gene92478:CDS |
GTATCTTCAGGTTGATCTTA+TGG | 0.310801 | 7.3:+76791766 | MS.gene92478:CDS |
TTGAGATTGGCGTAATGGTT+GGG | 0.310946 | 7.3:+76798340 | MS.gene92478:CDS |
GGTAGCTTTGGTTTCCCTAT+TGG | 0.313903 | 7.3:+76793389 | MS.gene92478:CDS |
CTGATATTTGCAAAGTAAAT+AGG | 0.315712 | 7.3:-76798764 | None:intergenic |
GTAAGCAGAATATCTGGATT+TGG | 0.319100 | 7.3:-76799694 | None:intergenic |
CAAGAACATTAGACACCAAT+AGG | 0.323164 | 7.3:-76793404 | None:intergenic |
CCATTGTATGTATATGCTTC+AGG | 0.324548 | 7.3:-76798716 | None:intergenic |
GTTGGATTCGGATATATAAA+TGG | 0.334408 | 7.3:+76791738 | MS.gene92478:CDS |
TATTTGTGTATGCCATATTT+GGG | 0.337965 | 7.3:+76793340 | MS.gene92478:CDS |
CATAGACTCTAGTGCAGTTC+AGG | 0.343102 | 7.3:+76799507 | MS.gene92478:CDS |
GTCGATGTCATATGCGAAAT+TGG | 0.343823 | 7.3:+76792157 | MS.gene92478:intron |
CATGAAAGTGGTGCAAAATC+TGG | 0.349287 | 7.3:+76796735 | MS.gene92478:CDS |
GGCTTTGAAAGACTTGTATC+AGG | 0.353524 | 7.3:+76799528 | MS.gene92478:CDS |
TATAACAGGTGTGGCTATAC+TGG | 0.354199 | 7.3:+76795964 | MS.gene92478:CDS |
TCCGATTGGGAATCTCTGAT+TGG | 0.358619 | 7.3:-76799961 | None:intergenic |
TTCTACTGGCTCTTATGGTT+GGG | 0.362190 | 7.3:+76793472 | MS.gene92478:CDS |
ATCGTGATCTCTGCTGTAAT+TGG | 0.362941 | 7.3:+76797496 | MS.gene92478:CDS |
CCGATTGGGAATCTCTGATT+GGG | 0.363878 | 7.3:-76799960 | None:intergenic |
TGCAAATATCAGTTACATAA+AGG | 0.366797 | 7.3:+76798775 | MS.gene92478:CDS |
TGGGATCCTTCAGTGCATAA+TGG | 0.369640 | 7.3:+76793491 | MS.gene92478:CDS |
ATTCTACTGGCTCTTATGGT+TGG | 0.370008 | 7.3:+76793471 | MS.gene92478:CDS |
TTCCTTGTTCTCGTTGGATT+CGG | 0.370753 | 7.3:+76791726 | MS.gene92478:CDS |
CCCAAAACTACTGCTGTAAG+AGG | 0.373728 | 7.3:-76794903 | None:intergenic |
ATTCTTACAATTGAAATTGA+TGG | 0.395379 | 7.3:-76794954 | None:intergenic |
ACTGCTTCAGCTATTGTGAT+TGG | 0.408102 | 7.3:+76793958 | MS.gene92478:CDS |
GAGGAATGACGTGGCTTGAA+TGG | 0.412301 | 7.3:+76791690 | MS.gene92478:CDS |
GTACAAGTTACGGGACATTC+AGG | 0.413233 | 7.3:+76799552 | MS.gene92478:CDS |
AGCAGTTGGTCCGGTAGCTT+TGG | 0.414161 | 7.3:+76793377 | MS.gene92478:CDS |
CGGTGTTATGCTCGTTCCTC+AGG | 0.417618 | 7.3:+76791802 | MS.gene92478:CDS |
GAAGATGAAGACGTAAGGTT+TGG | 0.417643 | 7.3:-76791614 | None:intergenic |
CAGAATATCTGGATTTGGAT+TGG | 0.419878 | 7.3:-76799689 | None:intergenic |
TCTTGATTCCTTGTTCTCGT+TGG | 0.424460 | 7.3:+76791720 | MS.gene92478:CDS |
CGCCGAATGTCGCGATTTCG+CGG | 0.424546 | 7.3:+76791651 | MS.gene92478:CDS |
TACTTTGTCTAAAGCCGGTC+TGG | 0.426141 | 7.3:+76799714 | MS.gene92478:CDS |
AGTCGGCATGGTTGCGGCGG+AGG | 0.432758 | 7.3:-76791561 | None:intergenic |
TTGTTCCTTGGTATTGAGAT+TGG | 0.434224 | 7.3:+76798327 | MS.gene92478:CDS |
AGAGTTGTATATCAGGTTGC+GGG | 0.436625 | 7.3:+76798865 | MS.gene92478:intron |
TATAATAGCTGGAGCTGATA+AGG | 0.439452 | 7.3:+76794053 | MS.gene92478:CDS |
CTGGCGAGAAGACCCAAATA+TGG | 0.444652 | 7.3:-76793352 | None:intergenic |
AACCGCGAAATCGCGACATT+CGG | 0.445101 | 7.3:-76791653 | None:intergenic |
ATTAGCCATTCAGTAATCTC+TGG | 0.447549 | 7.3:+76793928 | MS.gene92478:CDS |
GCTCTTGGAACAGAAAATTT+GGG | 0.448485 | 7.3:-76795902 | None:intergenic |
ATAGAAGACTGACCTGTAGT+AGG | 0.449271 | 7.3:-76796549 | None:intergenic |
GGGATCCTTCAGTGCATAAT+GGG | 0.449624 | 7.3:+76793492 | MS.gene92478:CDS |
ACAATGTTGTAGTGCTAGTA+AGG | 0.455578 | 7.3:-76798308 | None:intergenic |
ATGTCATATGCGAAATTGGC+TGG | 0.456493 | 7.3:+76792161 | MS.gene92478:CDS |
TGACAACAATGGTTCCGATT+GGG | 0.460461 | 7.3:-76799974 | None:intergenic |
CTTCAGGTTGATCTTATGGC+TGG | 0.463796 | 7.3:+76791770 | MS.gene92478:CDS |
CTGTGTGATGCGAAGGTTGT+TGG | 0.465976 | 7.3:-76791524 | None:intergenic |
CACTGAGTTGGCAATTCTAC+TGG | 0.466495 | 7.3:+76793458 | MS.gene92478:CDS |
GCCGGTCTGGTGGAGTTGAT+AGG | 0.466966 | 7.3:+76799727 | MS.gene92478:CDS |
GAATGTGACCTTTCAGATCC+TGG | 0.470319 | 7.3:-76799820 | None:intergenic |
CTGCTTACTTTGTCTAAAGC+CGG | 0.473722 | 7.3:+76799709 | MS.gene92478:CDS |
GCATGGTTGCGGCGGAGGGA+AGG | 0.474372 | 7.3:-76791556 | None:intergenic |
AGCACTACAACATTGTTCCT+TGG | 0.474895 | 7.3:+76798315 | MS.gene92478:CDS |
AATATGGCATACACAAATAT+GGG | 0.477982 | 7.3:-76793336 | None:intergenic |
AAAATTAATTCTTTCAACCT+CGG | 0.479562 | 7.3:-76798927 | None:intergenic |
TAAATGGCGTGAGTATCTTC+AGG | 0.481726 | 7.3:+76791754 | MS.gene92478:CDS |
TTACGATTCTTGAGAGCTGC+AGG | 0.485999 | 7.3:+76794879 | MS.gene92478:CDS |
AAATTAATTCTTTCAACCTC+GGG | 0.486146 | 7.3:-76798926 | None:intergenic |
TTGGTTAAAAGTATAATAGC+TGG | 0.487738 | 7.3:+76794042 | MS.gene92478:CDS |
AATAATTGCGAGAAGAAGCT+TGG | 0.489067 | 7.3:-76799871 | None:intergenic |
AGGACGAGTCGGCATGGTTG+CGG | 0.489989 | 7.3:-76791567 | None:intergenic |
GTATCAGGAGTACAAGTTAC+GGG | 0.492382 | 7.3:+76799543 | MS.gene92478:CDS |
AACTTACAAAGTCCATATAT+CGG | 0.495790 | 7.3:-76792191 | None:intergenic |
TCTGCATACTCAAAAGCTCT+TGG | 0.495908 | 7.3:-76795917 | None:intergenic |
TGCGCCACCGCTGATGCGCA+TGG | 0.498289 | 7.3:+76791493 | None:intergenic |
TGAGATTGGCGTAATGGTTG+GGG | 0.499094 | 7.3:+76798341 | MS.gene92478:CDS |
TTGACAACAATGGTTCCGAT+TGG | 0.500344 | 7.3:-76799975 | None:intergenic |
TCTCTGATTGGGGCGAGCGG+AGG | 0.501476 | 7.3:-76799949 | None:intergenic |
ATTAACAGCTGATCTTGAAA+AGG | 0.503105 | 7.3:-76796712 | None:intergenic |
TGGTATTGAGATTGGCGTAA+TGG | 0.507000 | 7.3:+76798335 | MS.gene92478:CDS |
ATAACTGATCCCATTACAAA+AGG | 0.509926 | 7.3:-76794727 | None:intergenic |
AAGAACATTAGACACCAATA+GGG | 0.510273 | 7.3:-76793403 | None:intergenic |
GTCGGCATGGTTGCGGCGGA+GGG | 0.513763 | 7.3:-76791560 | None:intergenic |
TCCTATCAACTCCACCAGAC+CGG | 0.514447 | 7.3:-76799728 | None:intergenic |
CTACCGGACCAACTGCTAGC+TGG | 0.514607 | 7.3:-76793371 | None:intergenic |
GATCTCTGCTGTAATTGGTC+TGG | 0.514624 | 7.3:+76797501 | MS.gene92478:CDS |
ATTGAGATTGGCGTAATGGT+TGG | 0.516500 | 7.3:+76798339 | MS.gene92478:CDS |
ACAAATACCGACTTAGAGTC+TGG | 0.518650 | 7.3:+76799916 | MS.gene92478:CDS |
GGTTGCGGCGGAGGGAAGGT+CGG | 0.520986 | 7.3:-76791552 | None:intergenic |
TGTATCAGGAGTACAAGTTA+CGG | 0.523020 | 7.3:+76799542 | MS.gene92478:CDS |
AAGTAGCAAGATTATACCAT+TGG | 0.527727 | 7.3:+76794023 | MS.gene92478:CDS |
ACCGACTTAGAGTCTGGTAA+TGG | 0.529519 | 7.3:+76799922 | MS.gene92478:CDS |
GTAAGGTTTGGATGTTGCAT+AGG | 0.533994 | 7.3:-76791602 | None:intergenic |
TGAGGTATGTTCTCAAATAG+TGG | 0.538351 | 7.3:-76796813 | None:intergenic |
TGCATAGGGATGACTCTGAT+AGG | 0.538732 | 7.3:-76791587 | None:intergenic |
GAGTATCCGCAATAGTTTCA+GGG | 0.541820 | 7.3:+76796757 | MS.gene92478:CDS |
ATTATATCCAGGGAAAATCA+AGG | 0.543770 | 7.3:+76794850 | MS.gene92478:intron |
CGCGAAATCGCGACATTCGG+CGG | 0.546313 | 7.3:-76791650 | None:intergenic |
TAGAAGACTGACCTGTAGTA+GGG | 0.548883 | 7.3:-76796548 | None:intergenic |
AAAGAATGAACCAAGAACAT+TGG | 0.551812 | 7.3:-76796517 | None:intergenic |
ACTATTTGAGAACATACCTC+AGG | 0.552052 | 7.3:+76796815 | MS.gene92478:CDS |
TTTCTATAAACAGTTGTCCC+TGG | 0.552260 | 7.3:-76798680 | None:intergenic |
TAAGGTTTGGATGTTGCATA+GGG | 0.555619 | 7.3:-76791601 | None:intergenic |
TTTGTCTAAAGCCGGTCTGG+TGG | 0.555936 | 7.3:+76799717 | MS.gene92478:CDS |
TGGAGTTGATAGGAAAAGAA+TGG | 0.556099 | 7.3:+76799737 | MS.gene92478:CDS |
TCTTCTCGCCAGCTAGCAGT+TGG | 0.556746 | 7.3:+76793363 | MS.gene92478:CDS |
TCAGCTGTTAATCATGAAAG+TGG | 0.557119 | 7.3:+76796723 | MS.gene92478:CDS |
TCGCCAGCTAGCAGTTGGTC+CGG | 0.561251 | 7.3:+76793368 | MS.gene92478:CDS |
CCTGAAGCATATACATACAA+TGG | 0.562941 | 7.3:+76798716 | MS.gene92478:CDS |
AAGGCATTAGCAGCAAAGAA+TGG | 0.564127 | 7.3:+76796105 | MS.gene92478:CDS |
AGTGCATAATGGGACTATTG+AGG | 0.564919 | 7.3:+76793502 | MS.gene92478:CDS |
AGCAAAGAATGGCTATGAGT+TGG | 0.565094 | 7.3:+76796116 | MS.gene92478:CDS |
CCCAATCAGAGATTCCCAAT+CGG | 0.565097 | 7.3:+76799960 | MS.gene92478:CDS |
TCGAAGAAGATGAAGACGTA+AGG | 0.567031 | 7.3:-76791619 | None:intergenic |
CGGTTCGCGTCGAAGCTTCG+AGG | 0.570558 | 7.3:+76791671 | MS.gene92478:CDS |
ATAGTCCCATTATGCACTGA+AGG | 0.574221 | 7.3:-76793497 | None:intergenic |
CTTACAATTGAAATTGATGG+TGG | 0.574493 | 7.3:-76794951 | None:intergenic |
CATGTTCAAAGTTTGAAACC+AGG | 0.577959 | 7.3:+76799802 | MS.gene92478:CDS |
ATCCGAATCCAACGAGAACA+AGG | 0.578833 | 7.3:-76791728 | None:intergenic |
TTAGGTGGGAGAGATACCTC+AGG | 0.579082 | 7.3:+76795874 | MS.gene92478:intron |
CAACTCAGTGTATAACTCAC+TGG | 0.582889 | 7.3:-76793445 | None:intergenic |
ATATCAGTTACATAAAGGAC+AGG | 0.585956 | 7.3:+76798780 | MS.gene92478:CDS |
CCTGTTATAAGAAAAGCAGT+TGG | 0.586346 | 7.3:-76795950 | None:intergenic |
TTCAAAATGCAGGAGTCGGT+AGG | 0.591938 | 7.3:+76796075 | MS.gene92478:intron |
CGATTGGGAATCTCTGATTG+GGG | 0.597169 | 7.3:-76799959 | None:intergenic |
TATGATCCCTGAAACTATTG+CGG | 0.601584 | 7.3:-76796763 | None:intergenic |
TTCTACAAGACGTGGTCCCG+AGG | 0.601685 | 7.3:+76798910 | MS.gene92478:CDS |
AATAGGGAAACCAAAGCTAC+CGG | 0.601894 | 7.3:-76793387 | None:intergenic |
GCAATTATTTAAGCAGAGAG+AGG | 0.604638 | 7.3:+76799885 | MS.gene92478:CDS |
TCTGATAGGACGAGTCGGCA+TGG | 0.607176 | 7.3:-76791573 | None:intergenic |
GAATCTCTGATTGGGGCGAG+CGG | 0.607461 | 7.3:-76799952 | None:intergenic |
CTTATGGCTGGAATCACCGT+CGG | 0.610088 | 7.3:+76791782 | MS.gene92478:CDS |
GTTTGAAACCAGGATCTGAA+AGG | 0.611199 | 7.3:+76799812 | MS.gene92478:CDS |
TGAGTTGGATTCAAATCAAG+AGG | 0.613832 | 7.3:+76796131 | MS.gene92478:CDS |
ACGAGTCGGCATGGTTGCGG+CGG | 0.615772 | 7.3:-76791564 | None:intergenic |
CAGTGAGTTATACACTGAGT+TGG | 0.621535 | 7.3:+76793446 | MS.gene92478:CDS |
GGAGTAACTGTGTGATGCGA+AGG | 0.621994 | 7.3:-76791531 | None:intergenic |
ACTTAGAGTCTGGTAATGGA+AGG | 0.627384 | 7.3:+76799926 | MS.gene92478:CDS |
TAAAGCCAGAGATTACTGAA+TGG | 0.630729 | 7.3:-76793933 | None:intergenic |
CCAAAACTACTGCTGTAAGA+GGG | 0.632001 | 7.3:-76794902 | None:intergenic |
ACTGATCCCATTACAAAAGG+AGG | 0.633231 | 7.3:-76794724 | None:intergenic |
CAAATAGACTTACCAATGTG+AGG | 0.637761 | 7.3:-76798479 | None:intergenic |
TTGGAACAGAAAATTTGGGT+AGG | 0.644767 | 7.3:-76795898 | None:intergenic |
GAAAATTTGGGTAGGCCCTG+AGG | 0.645374 | 7.3:-76795890 | None:intergenic |
CGAAGCTTCGAGGAATGACG+TGG | 0.648981 | 7.3:+76791681 | MS.gene92478:CDS |
TCCATTACCAGACTCTAAGT+CGG | 0.651725 | 7.3:-76799923 | None:intergenic |
ATGACTCTGATAGGACGAGT+CGG | 0.664873 | 7.3:-76791578 | None:intergenic |
AACTGCACTAGAGTCTATGT+AGG | 0.667319 | 7.3:-76799503 | None:intergenic |
GGAGTCGGTAGGAATTGCAA+AGG | 0.669537 | 7.3:+76796086 | MS.gene92478:intron |
ACTTCTAGTCATGAAACACC+TGG | 0.684072 | 7.3:+76794759 | MS.gene92478:CDS |
TAGGTGGGAGAGATACCTCA+GGG | 0.692099 | 7.3:+76795875 | MS.gene92478:intron |
GAGTCAGCAAATCCTCACAT+TGG | 0.704325 | 7.3:+76798467 | MS.gene92478:CDS |
TTACGCCAATCTCAATACCA+AGG | 0.707381 | 7.3:-76798332 | None:intergenic |
AGGAACGAGCATAACACCGA+CGG | 0.708061 | 7.3:-76791798 | None:intergenic |
GTTGATAGTTCTACAAGACG+TGG | 0.718335 | 7.3:+76798902 | MS.gene92478:CDS |
AATTACAGCAGAGATCACGA+TGG | 0.799009 | 7.3:-76797494 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 76791506 | 76800008 | 76791506 | ID=MS.gene92478 |
chr7.3 | mRNA | 76791506 | 76800008 | 76791506 | ID=MS.gene92478.t1;Parent=MS.gene92478 |
chr7.3 | exon | 76791506 | 76791823 | 76791506 | ID=MS.gene92478.t1.exon1;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76791506 | 76791823 | 76791506 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76792158 | 76792206 | 76792158 | ID=MS.gene92478.t1.exon2;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76792158 | 76792206 | 76792158 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76793322 | 76793523 | 76793322 | ID=MS.gene92478.t1.exon3;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76793322 | 76793523 | 76793322 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76793906 | 76794074 | 76793906 | ID=MS.gene92478.t1.exon4;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76793906 | 76794074 | 76793906 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76794715 | 76794780 | 76794715 | ID=MS.gene92478.t1.exon5;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76794715 | 76794780 | 76794715 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76794861 | 76794968 | 76794861 | ID=MS.gene92478.t1.exon6;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76794861 | 76794968 | 76794861 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76795878 | 76795985 | 76795878 | ID=MS.gene92478.t1.exon7;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76795878 | 76795985 | 76795878 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76796087 | 76796152 | 76796087 | ID=MS.gene92478.t1.exon8;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76796087 | 76796152 | 76796087 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76796498 | 76796558 | 76796498 | ID=MS.gene92478.t1.exon9;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76796498 | 76796558 | 76796498 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76796709 | 76796836 | 76796709 | ID=MS.gene92478.t1.exon10;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76796709 | 76796836 | 76796709 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76797481 | 76797522 | 76797481 | ID=MS.gene92478.t1.exon11;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76797481 | 76797522 | 76797481 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76798246 | 76798362 | 76798246 | ID=MS.gene92478.t1.exon12;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76798246 | 76798362 | 76798246 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76798437 | 76798488 | 76798437 | ID=MS.gene92478.t1.exon13;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76798437 | 76798488 | 76798437 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76798663 | 76798801 | 76798663 | ID=MS.gene92478.t1.exon14;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76798663 | 76798801 | 76798663 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76798880 | 76798968 | 76798880 | ID=MS.gene92478.t1.exon15;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76798880 | 76798968 | 76798880 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76799497 | 76799573 | 76799497 | ID=MS.gene92478.t1.exon16;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76799497 | 76799573 | 76799497 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
chr7.3 | exon | 76799679 | 76800008 | 76799679 | ID=MS.gene92478.t1.exon17;Parent=MS.gene92478.t1 |
chr7.3 | CDS | 76799679 | 76800008 | 76799679 | ID=cds.MS.gene92478.t1;Parent=MS.gene92478.t1 |
Gene Sequence |
Protein sequence |