AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59772


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59772.t1 MTR_8g043450 93.659 205 11 1 1 203 1 205 5.59e-139 387
MS.gene59772.t1 MTR_8g043430 42.775 173 92 4 1 170 1 169 4.29e-37 127
MS.gene59772.t1 MTR_1g035200 52.273 132 60 2 1 132 91 219 1.58e-35 125
MS.gene59772.t1 MTR_8g043410 42.748 131 74 1 1 130 1 131 4.45e-32 113
MS.gene59772.t1 MTR_5g006380 49.383 81 40 1 17 96 18 98 5.04e-19 79.3
MS.gene59772.t1 MTR_7g086210 35.185 108 67 2 11 116 251 357 1.06e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59772.t1 AT5G27990 39.791 191 93 6 15 204 15 184 4.51e-28 104
MS.gene59772.t1 AT5G27990 39.791 191 93 6 15 204 15 184 4.51e-28 104
MS.gene59772.t1 AT3G22510 43.956 91 49 2 19 108 35 124 9.66e-17 73.6

Find 50 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGTTAGATTCGGATTT+TGG 0.118567 8.3:-55269763 None:intergenic
CCCATTAACTGCCTTGTTCA+TGG 0.257049 8.3:-55269788 None:intergenic
GATTGTCCTTGTAGCTTGTT+AGG 0.268126 8.3:-55266394 None:intergenic
CGTAATCCAGCTGCTTATTC+TGG 0.316707 8.3:+55267867 MS.gene59772:CDS
TCCATGAACAAGGCAGTTAA+TGG 0.322486 8.3:+55269787 MS.gene59772:CDS
CAAGCATTCACCGAAGGAAT+TGG 0.334350 8.3:+55266421 MS.gene59772:CDS
ATGTACGGAGAATGTTTAGA+AGG 0.404882 8.3:+55267807 MS.gene59772:CDS
CGGCGAGTTGGTGAGCTTTG+AGG 0.405818 8.3:-55266513 None:intergenic
CATGGAATTCAAGTTAGATT+CGG 0.413868 8.3:-55269770 None:intergenic
ATTCTCCGTACATAATCATT+AGG 0.419425 8.3:-55267797 None:intergenic
TGAAGATGGTAGCGATGAAC+AGG 0.428791 8.3:+55266744 MS.gene59772:CDS
TGCTTATTCTGGTGTGCAAA+AGG 0.442639 8.3:+55267878 MS.gene59772:CDS
ATTCACCGAAGGAATTGGTT+TGG 0.452171 8.3:+55266426 MS.gene59772:CDS
TCGCCGCTGATGTCCTTGCT+TGG 0.458421 8.3:+55266530 MS.gene59772:CDS
AATCCAGGTGAAGGAGATGA+TGG 0.464837 8.3:+55269838 MS.gene59772:CDS
CCATGAACAAGGCAGTTAAT+GGG 0.478078 8.3:+55269788 MS.gene59772:CDS
CTTGAAAACTTACTCTATCA+AGG 0.485832 8.3:+55266697 MS.gene59772:CDS
CGGTTCGGAGCGCCGACCAA+CGG 0.515900 8.3:-55266456 None:intergenic
GGGTCTCAGCCGGAAAATCC+AGG 0.517000 8.3:+55269808 MS.gene59772:CDS
ATGCTGTGCTAGATTGTGAA+TGG 0.520448 8.3:+55269667 MS.gene59772:intron
CAAAACCAAACCAATTCCTT+CGG 0.521269 8.3:-55266431 None:intergenic
TGCACACCAGAATAAGCAGC+TGG 0.521274 8.3:-55267873 None:intergenic
TCACCTGGATTATCCTCACC+TGG 0.521450 8.3:-55269826 None:intergenic
CATCCATCATCTCCTTCACC+TGG 0.522549 8.3:-55269841 None:intergenic
GTTTGCTGAATTATCGTCCT+CGG 0.531050 8.3:-55269725 None:intergenic
GCCGTTGAAAATGAGTGGGC+TGG 0.531900 8.3:+55266478 MS.gene59772:CDS
GGCAGTTAATGGGTCTCAGC+CGG 0.532626 8.3:+55269798 MS.gene59772:CDS
CAAGGACATCAGCGGCGAGT+TGG 0.532997 8.3:-55266525 None:intergenic
GTCAATATAGTGATTGAAGA+TGG 0.545813 8.3:+55266730 MS.gene59772:CDS
TGGATTGAGTGAACCAAGCA+AGG 0.551697 8.3:-55266543 None:intergenic
TGCTAGATTGTGAATGGCAA+TGG 0.553024 8.3:+55269673 MS.gene59772:intron
AATCCAGGTGAGGATAATCC+AGG 0.559977 8.3:+55269823 MS.gene59772:CDS
GGACGATAATTCAGCAAACA+TGG 0.560906 8.3:+55269729 MS.gene59772:CDS
GAAGACCTAATGATTATGTA+CGG 0.576974 8.3:+55267792 MS.gene59772:CDS
TAATTCAGCAAACATGGATG+TGG 0.582482 8.3:+55269735 MS.gene59772:CDS
AAAACTTACTCTATCAAGGA+GGG 0.590140 8.3:+55266701 MS.gene59772:CDS
GCTTGGTTCACTCAATCCAA+AGG 0.593121 8.3:+55266547 MS.gene59772:CDS
ATGGATGGTCTGTTGTCTCA+AGG 0.606611 8.3:+55269857 MS.gene59772:CDS
GAACCGCCGTTGAAAATGAG+TGG 0.611433 8.3:+55266473 MS.gene59772:CDS
GGTGAGGATAATCCAGGTGA+AGG 0.612481 8.3:+55269829 MS.gene59772:CDS
AACCGCCGTTGAAAATGAGT+GGG 0.615075 8.3:+55266474 MS.gene59772:CDS
CAGGTGAAGGAGATGATGGA+TGG 0.615703 8.3:+55269842 MS.gene59772:CDS
ACGAATCCTAACAAGCTACA+AGG 0.631057 8.3:+55266388 MS.gene59772:CDS
TAACTTGAATTCCATGAACA+AGG 0.636334 8.3:+55269777 MS.gene59772:CDS
GAAAACTTACTCTATCAAGG+AGG 0.642840 8.3:+55266700 MS.gene59772:CDS
GAACCAAGCAAGGACATCAG+CGG 0.665981 8.3:-55266533 None:intergenic
TCACTTCAAGCATTCACCGA+AGG 0.673760 8.3:+55266415 MS.gene59772:CDS
TCAGCCGGAAAATCCAGGTG+AGG 0.693925 8.3:+55269813 MS.gene59772:CDS
GATGGTCTGTTGTCTCAAGG+AGG 0.721375 8.3:+55269860 MS.gene59772:CDS
TGATTCTGATGATAACACCG+AGG 0.799487 8.3:+55269708 MS.gene59772:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAACTATTAGAATTT+GGG + chr8.3:55267000-55267019 MS.gene59772:intron 10.0%
!!! TATGATATTATTATTTTGTT+TGG + chr8.3:55269050-55269069 MS.gene59772:intron 10.0%
!!! TTAAATTATGTATTTGTTTT+TGG + chr8.3:55266787-55266806 MS.gene59772:intron 10.0%
!! GATATAAAACTATTAGAATT+TGG + chr8.3:55266999-55267018 MS.gene59772:intron 15.0%
!!! ATATGTTAATTTAGCATTTT+TGG + chr8.3:55269563-55269582 MS.gene59772:intron 15.0%
!! AAAAAGAAATGATCAACTTT+AGG + chr8.3:55268970-55268989 MS.gene59772:intron 20.0%
!! AAAAGAAATGATCAACTTTA+GGG + chr8.3:55268971-55268990 MS.gene59772:intron 20.0%
!! AATTTGGAAATTAGTCAAAT+GGG + chr8.3:55267341-55267360 MS.gene59772:intron 20.0%
!! ATTTGCAATATCAAATTTGT+AGG + chr8.3:55267952-55267971 MS.gene59772:intron 20.0%
!! CAATTACACAATGTTATATT+AGG - chr8.3:55269413-55269432 None:intergenic 20.0%
!! CAGGAATTAAAAAGAAATAA+TGG - chr8.3:55269313-55269332 None:intergenic 20.0%
!! GATTTAAACTGTGAATAATT+TGG + chr8.3:55266851-55266870 MS.gene59772:intron 20.0%
!! GCTTAAACAATTAAAAAAAC+AGG - chr8.3:55266595-55266614 None:intergenic 20.0%
!! TTTGCAATATCAAATTTGTA+GGG + chr8.3:55267953-55267972 MS.gene59772:intron 20.0%
!!! AATTTAGCATTTTTGGTTTA+TGG + chr8.3:55269570-55269589 MS.gene59772:intron 20.0%
!!! CATTATTTCTTTTTAATTCC+TGG + chr8.3:55269311-55269330 MS.gene59772:intron 20.0%
!!! CTCTTTTGTTAGTAATTTTA+GGG + chr8.3:55267449-55267468 MS.gene59772:intron 20.0%
!!! GTTTAAAATTATGTTGACAA+AGG - chr8.3:55268617-55268636 None:intergenic 20.0%
!!! TATTATTTTGTTTGGCTTTT+TGG + chr8.3:55269058-55269077 MS.gene59772:intron 20.0%
!!! TCTTTTGTTAGTAATTTTAG+GGG + chr8.3:55267450-55267469 MS.gene59772:intron 20.0%
!!! TTGATCATTTCTTTTTAACA+CGG - chr8.3:55268966-55268985 None:intergenic 20.0%
!!! TTGCAATTTTAACATGTTTA+GGG - chr8.3:55267414-55267433 None:intergenic 20.0%
!!! TTTGCAATTTTAACATGTTT+AGG - chr8.3:55267415-55267434 None:intergenic 20.0%
!!! TTTTTGGAATATTACTTTAC+TGG + chr8.3:55266803-55266822 MS.gene59772:intron 20.0%
! AAAACTATTAGAATTTGGGT+TGG + chr8.3:55267004-55267023 MS.gene59772:intron 25.0%
! AAACAATTTCTCATCATTAG+AGG - chr8.3:55268561-55268580 None:intergenic 25.0%
! AAATAATGGCTTAAAAACTG+GGG - chr8.3:55269299-55269318 None:intergenic 25.0%
! ACATCAAACCATTAATTAGA+TGG + chr8.3:55269369-55269388 MS.gene59772:intron 25.0%
! AGAAATAATGGCTTAAAAAC+TGG - chr8.3:55269301-55269320 None:intergenic 25.0%
! ATTTCTCTGCATTAGAAATT+AGG + chr8.3:55268431-55268450 MS.gene59772:intron 25.0%
! CAATTTGGAAATTAGTCAAA+TGG + chr8.3:55267340-55267359 MS.gene59772:intron 25.0%
! CCTAAAATTACTAACAAAAG+AGG - chr8.3:55267451-55267470 None:intergenic 25.0%
! CTAATTCAACCTTATAAAAC+CGG + chr8.3:55267029-55267048 MS.gene59772:intron 25.0%
! GAAATAATGGCTTAAAAACT+GGG - chr8.3:55269300-55269319 None:intergenic 25.0%
! GAACATTTCCATCTAATTAA+TGG - chr8.3:55269380-55269399 None:intergenic 25.0%
! GTGATTAATTACAATACCTT+TGG - chr8.3:55266566-55266585 None:intergenic 25.0%
! TCTAATGATGAGAAATTGTT+TGG + chr8.3:55268560-55268579 MS.gene59772:intron 25.0%
! TTGTGTAATTGTAACTTTGA+TGG + chr8.3:55269422-55269441 MS.gene59772:intron 25.0%
!! AAACTATTAGAATTTGGGTT+GGG + chr8.3:55267005-55267024 MS.gene59772:intron 25.0%
!! ATTTTATAAGAGCAACACTT+TGG - chr8.3:55266908-55266927 None:intergenic 25.0%
!! CCAAATTGTTATTAGAAGAA+GGG - chr8.3:55267328-55267347 None:intergenic 25.0%
!! CCTCTTTTGTTAGTAATTTT+AGG + chr8.3:55267448-55267467 MS.gene59772:intron 25.0%
!! GGATATTTAGGTTTATATAG+AGG + chr8.3:55269079-55269098 MS.gene59772:intron 25.0%
!! GTGTTGCTCTTATAAAATTA+CGG + chr8.3:55266910-55266929 MS.gene59772:intron 25.0%
!! TATGATACCATATAGCATTT+TGG + chr8.3:55267228-55267247 MS.gene59772:intron 25.0%
!! TCCAAATTGTTATTAGAAGA+AGG - chr8.3:55267329-55267348 None:intergenic 25.0%
!!! AGGATATTTCAGGTTTTATT+AGG + chr8.3:55269180-55269199 MS.gene59772:intron 25.0%
!!! TAAACAAAAGCATTGATGTT+TGG + chr8.3:55267283-55267302 MS.gene59772:intron 25.0%
AAAACTTACTCTATCAAGGA+GGG + chr8.3:55266701-55266720 MS.gene59772:CDS 30.0%
AAATTAAGGCACAATGCATT+TGG + chr8.3:55267902-55267921 MS.gene59772:intron 30.0%
AACACATTCAAGGACTAAAT+TGG + chr8.3:55267492-55267511 MS.gene59772:intron 30.0%
ACACACACACACAAATTTAT+TGG + chr8.3:55268368-55268387 MS.gene59772:intron 30.0%
ATTAATGGTTTGATGTAAGC+TGG - chr8.3:55269365-55269384 None:intergenic 30.0%
ATTCTCCGTACATAATCATT+AGG - chr8.3:55267800-55267819 None:intergenic 30.0%
CACAAATTCTATTTGACCAA+GGG - chr8.3:55267658-55267677 None:intergenic 30.0%
CCACTTATAAACAATTGTTC+AGG + chr8.3:55267083-55267102 MS.gene59772:intron 30.0%
CCCTTCTTCTAATAACAATT+TGG + chr8.3:55267325-55267344 MS.gene59772:intron 30.0%
CCTGAACAATTGTTTATAAG+TGG - chr8.3:55267086-55267105 None:intergenic 30.0%
CTATAACTTTGTATGCTACA+CGG + chr8.3:55268085-55268104 MS.gene59772:intron 30.0%
CTGAAATATCCTTTAAGCAA+GGG - chr8.3:55269172-55269191 None:intergenic 30.0%
CTTGAAAACTTACTCTATCA+AGG + chr8.3:55266697-55266716 MS.gene59772:CDS 30.0%
GAAGACCTAATGATTATGTA+CGG + chr8.3:55267792-55267811 MS.gene59772:CDS 30.0%
GGATTTCAATTTCTACATGA+TGG + chr8.3:55267995-55268014 MS.gene59772:intron 30.0%
GTACATGTTTGTGATAATAC+AGG + chr8.3:55267764-55267783 MS.gene59772:intron 30.0%
GTCAATATAGTGATTGAAGA+TGG + chr8.3:55266730-55266749 MS.gene59772:CDS 30.0%
GTCAGGAAATCAACTATAAT+AGG - chr8.3:55269508-55269527 None:intergenic 30.0%
TAACTTGAATTCCATGAACA+AGG + chr8.3:55269777-55269796 MS.gene59772:CDS 30.0%
TATCACTATAACTGCAATTG+AGG - chr8.3:55266983-55267002 None:intergenic 30.0%
TCTTGACAGCAAAAATTTAG+AGG + chr8.3:55269102-55269121 MS.gene59772:intron 30.0%
! AGTATTTGAGTTTGAGTTTC+CGG + chr8.3:55269142-55269161 MS.gene59772:intron 30.0%
! CAAGTATTTTCCTACAAGTT+GGG - chr8.3:55269463-55269482 None:intergenic 30.0%
! CATGGAATTCAAGTTAGATT+CGG - chr8.3:55269773-55269792 None:intergenic 30.0%
! CTTGATAGAGTAAGTTTTCA+AGG - chr8.3:55266699-55266718 None:intergenic 30.0%
! GGTATGTGTTTGATTGATTT+AGG + chr8.3:55267974-55267993 MS.gene59772:intron 30.0%
!! ATACCATATAGCATTTTGGT+TGG + chr8.3:55267232-55267251 MS.gene59772:intron 30.0%
!! CGGTTTTATAAGGTTGAATT+AGG - chr8.3:55267031-55267050 None:intergenic 30.0%
!! TTCAAGTTAGATTCGGATTT+TGG - chr8.3:55269766-55269785 None:intergenic 30.0%
!!! GTTTGGCTTTTTGGATATTT+AGG + chr8.3:55269067-55269086 MS.gene59772:intron 30.0%
!!! TACCATATAGCATTTTGGTT+GGG + chr8.3:55267233-55267252 MS.gene59772:intron 30.0%
!!! TATTTCAGGTTTTATTAGGC+CGG + chr8.3:55269184-55269203 MS.gene59772:intron 30.0%
ACTCATGACATGTGTAATCA+AGG - chr8.3:55269608-55269627 None:intergenic 35.0%
AGGGTCAATGATCTCAATTT+AGG - chr8.3:55267309-55267328 None:intergenic 35.0%
ATGTACGGAGAATGTTTAGA+AGG + chr8.3:55267807-55267826 MS.gene59772:CDS 35.0%
CAAAACCAAACCAATTCCTT+CGG - chr8.3:55266434-55266453 None:intergenic 35.0%
CAACAGCTAATGGAGATATT+TGG - chr8.3:55268822-55268841 None:intergenic 35.0%
CCAACTTGTAGGAAAATACT+TGG + chr8.3:55269461-55269480 MS.gene59772:intron 35.0%
CCTGAAATATCCTTTAAGCA+AGG - chr8.3:55269173-55269192 None:intergenic 35.0%
CCTTATAAAACCGGAATGTA+AGG + chr8.3:55267038-55267057 MS.gene59772:intron 35.0%
CCTTGCTTAAAGGATATTTC+AGG + chr8.3:55269170-55269189 MS.gene59772:intron 35.0%
CTCGCATTATTGTGTGTTAT+CGG + chr8.3:55268130-55268149 MS.gene59772:intron 35.0%
GAAAACTTACTCTATCAAGG+AGG + chr8.3:55266700-55266719 MS.gene59772:CDS 35.0%
GACAGCAAGTTACACTTATA+GGG + chr8.3:55267615-55267634 MS.gene59772:intron 35.0%
GCACAAATTCTATTTGACCA+AGG - chr8.3:55267659-55267678 None:intergenic 35.0%
GCATAAACTCACAAAAAGCA+CGG - chr8.3:55268466-55268485 None:intergenic 35.0%
GCTAATGTATCAACAGCTAA+TGG - chr8.3:55268832-55268851 None:intergenic 35.0%
GGTGTGCAAAAGGTAAATTA+AGG + chr8.3:55267888-55267907 MS.gene59772:intron 35.0%
GTCTCAAGGAGGAAAAATAA+GGG + chr8.3:55269871-55269890 MS.gene59772:CDS 35.0%
GTTGATACATTAGCTGTTGA+CGG + chr8.3:55268838-55268857 MS.gene59772:intron 35.0%
GTTTAGGGACTATATTGACA+GGG - chr8.3:55267399-55267418 None:intergenic 35.0%
TAATTCAGCAAACATGGATG+TGG + chr8.3:55269735-55269754 MS.gene59772:CDS 35.0%
TCGCATTATTGTGTGTTATC+GGG + chr8.3:55268131-55268150 MS.gene59772:intron 35.0%
TGACAGCAAGTTACACTTAT+AGG + chr8.3:55267614-55267633 MS.gene59772:intron 35.0%
TGCAATTGAGGAAACATTTG+TGG - chr8.3:55266971-55266990 None:intergenic 35.0%
TGTCTCAAGGAGGAAAAATA+AGG + chr8.3:55269870-55269889 MS.gene59772:CDS 35.0%
TGTTTAGGGACTATATTGAC+AGG - chr8.3:55267400-55267419 None:intergenic 35.0%
TGTTTATGAGTCCCTTTGTA+AGG - chr8.3:55267269-55267288 None:intergenic 35.0%
TTAAAAACTGGGGAGAATGT+AGG - chr8.3:55269289-55269308 None:intergenic 35.0%
TTCTGAGTACTTCTCTTGAA+AGG - chr8.3:55269223-55269242 None:intergenic 35.0%
! ACTTGATGTGTTGTGTGTTT+TGG + chr8.3:55268050-55268069 MS.gene59772:intron 35.0%
! ATGTAAGCTGGTTTATTGAG+GGG - chr8.3:55269353-55269372 None:intergenic 35.0%
! CCAAGTATTTTCCTACAAGT+TGG - chr8.3:55269464-55269483 None:intergenic 35.0%
! GATGTAAGCTGGTTTATTGA+GGG - chr8.3:55269354-55269373 None:intergenic 35.0%
! TATAAAGCGTTTCTGTGAAG+AGG - chr8.3:55266669-55266688 None:intergenic 35.0%
! TATTTGGAGCATGATCTGAA+TGG + chr8.3:55267169-55267188 MS.gene59772:intron 35.0%
! TCCTTGAATGTGTTTTTCCT+CGG - chr8.3:55267486-55267505 None:intergenic 35.0%
! TGACAGTGGTATTGAAGAAT+CGG + chr8.3:55268882-55268901 MS.gene59772:intron 35.0%
! TGATGTAAGCTGGTTTATTG+AGG - chr8.3:55269355-55269374 None:intergenic 35.0%
! TTTGCCATTTCGATTCATTC+AGG + chr8.3:55267584-55267603 MS.gene59772:intron 35.0%
!! AGTGTAACTTGCTGTCATAT+TGG - chr8.3:55267611-55267630 None:intergenic 35.0%
!! CACTTCTAGGACTAGATATT+TGG + chr8.3:55267153-55267172 MS.gene59772:intron 35.0%
!! CCTTACATTCCGGTTTTATA+AGG - chr8.3:55267041-55267060 None:intergenic 35.0%
!! GACACAAACTCTAGTCTTAT+TGG + chr8.3:55268269-55268288 MS.gene59772:intron 35.0%
!! TACTAACAAAAGAGGCACTA+GGG - chr8.3:55267443-55267462 None:intergenic 35.0%
!! TCTACATGATGGCGTATTTT+AGG + chr8.3:55268006-55268025 MS.gene59772:intron 35.0%
!! TGTTTTTGTCAGTGAAAGCA+AGG - chr8.3:55268491-55268510 None:intergenic 35.0%
!! TTACTAACAAAAGAGGCACT+AGG - chr8.3:55267444-55267463 None:intergenic 35.0%
!!! ATTTCAGGTTTTATTAGGCC+GGG + chr8.3:55269185-55269204 MS.gene59772:intron 35.0%
AAGGCACAATGCATTTGGAA+TGG + chr8.3:55267907-55267926 MS.gene59772:intron 40.0%
ACCGAGGAAAAACACATTCA+AGG + chr8.3:55267482-55267501 MS.gene59772:intron 40.0%
ACGAATCCTAACAAGCTACA+AGG + chr8.3:55266388-55266407 MS.gene59772:CDS 40.0%
AGGTGTGAAGGAATATCAGA+GGG - chr8.3:55268674-55268693 None:intergenic 40.0%
ATAGCCTATTCAAGATCCGT+TGG - chr8.3:55267211-55267230 None:intergenic 40.0%
ATGCTGTGCTAGATTGTGAA+TGG + chr8.3:55269667-55269686 MS.gene59772:intron 40.0%
ATTCACCGAAGGAATTGGTT+TGG + chr8.3:55266426-55266445 MS.gene59772:CDS 40.0%
ATTGTTTATAAGTGGCCGAG+TGG - chr8.3:55267078-55267097 None:intergenic 40.0%
CCATGAACAAGGCAGTTAAT+GGG + chr8.3:55269788-55269807 MS.gene59772:CDS 40.0%
CGATAACACACAATAATGCG+AGG - chr8.3:55268132-55268151 None:intergenic 40.0%
GCCTAACTCATCCTTACAAA+GGG + chr8.3:55267255-55267274 MS.gene59772:intron 40.0%
GGACGATAATTCAGCAAACA+TGG + chr8.3:55269729-55269748 MS.gene59772:CDS 40.0%
TAAAACCGGAATGTAAGGTG+AGG + chr8.3:55267043-55267062 MS.gene59772:intron 40.0%
TAAGAGTCCCACATTTGAAG+TGG - chr8.3:55267114-55267133 None:intergenic 40.0%
TAATCAACAGCGTTCAATCC+CGG - chr8.3:55269008-55269027 None:intergenic 40.0%
TAGCCTATTCAAGATCCGTT+GGG - chr8.3:55267210-55267229 None:intergenic 40.0%
TATCTAGCGTACTCCAACAA+AGG - chr8.3:55268298-55268317 None:intergenic 40.0%
TCCATGAACAAGGCAGTTAA+TGG + chr8.3:55269787-55269806 MS.gene59772:CDS 40.0%
TCCCTTTGTAAGGATGAGTT+AGG - chr8.3:55267259-55267278 None:intergenic 40.0%
TGATTCTGATGATAACACCG+AGG + chr8.3:55269708-55269727 MS.gene59772:CDS 40.0%
TGCTAGATTGTGAATGGCAA+TGG + chr8.3:55269673-55269692 MS.gene59772:intron 40.0%
TGCTTATTCTGGTGTGCAAA+AGG + chr8.3:55267878-55267897 MS.gene59772:CDS 40.0%
TGGTCCTGAATGAATCGAAA+TGG - chr8.3:55267591-55267610 None:intergenic 40.0%
TTGTTTATAAGTGGCCGAGT+GGG - chr8.3:55267077-55267096 None:intergenic 40.0%
! CCAAAACAGTGATTTTCCCT+TGG + chr8.3:55267639-55267658 MS.gene59772:intron 40.0%
! CCAAGGGAAAATCACTGTTT+TGG - chr8.3:55267642-55267661 None:intergenic 40.0%
! CTGTCATTTAGTCTCATGTC+AGG - chr8.3:55269525-55269544 None:intergenic 40.0%
! GTCTTATTGGCATCCTTTGT+TGG + chr8.3:55268282-55268301 MS.gene59772:intron 40.0%
! GTTTGCTGAATTATCGTCCT+CGG - chr8.3:55269728-55269747 None:intergenic 40.0%
! TTATCCTCACCTGGATTTTC+CGG - chr8.3:55269820-55269839 None:intergenic 40.0%
!! ACATGATGGCGTATTTTAGG+AGG + chr8.3:55268009-55268028 MS.gene59772:intron 40.0%
!! ATTTTCCTACAAGTTGGGCT+TGG - chr8.3:55269458-55269477 None:intergenic 40.0%
!! GATTGTCCTTGTAGCTTGTT+AGG - chr8.3:55266397-55266416 None:intergenic 40.0%
!! TAGAGGCTTTTGATGACTCA+CGG + chr8.3:55269119-55269138 MS.gene59772:intron 40.0%
AAACTGGGGAGAATGTAGGA+AGG - chr8.3:55269285-55269304 None:intergenic 45.0%
AAAGGGTGGGAGAGAAACAT+GGG - chr8.3:55268746-55268765 None:intergenic 45.0%
AACCGCCGTTGAAAATGAGT+GGG + chr8.3:55266474-55266493 MS.gene59772:CDS 45.0%
AAGCAAGGAAGCCTGAGTAT+GGG - chr8.3:55269254-55269273 None:intergenic 45.0%
AAGCTGGTAGGAAATGGTAC+AGG - chr8.3:55268650-55268669 None:intergenic 45.0%
AATCCAGGTGAAGGAGATGA+TGG + chr8.3:55269838-55269857 MS.gene59772:CDS 45.0%
AATCCAGGTGAGGATAATCC+AGG + chr8.3:55269823-55269842 MS.gene59772:CDS 45.0%
ACAGTCCTCACCTTACATTC+CGG - chr8.3:55267051-55267070 None:intergenic 45.0%
ACCACTGTCAATAACCACAG+TGG - chr8.3:55268872-55268891 None:intergenic 45.0%
ACTTTCCCAAACTCAGGCTT+AGG + chr8.3:55268796-55268815 MS.gene59772:intron 45.0%
AGCTGGTAGGAAATGGTACA+GGG - chr8.3:55268649-55268668 None:intergenic 45.0%
AGGAATATCAGAGGGAAAGC+TGG - chr8.3:55268666-55268685 None:intergenic 45.0%
AGGCCATACCACTTCAAATG+TGG + chr8.3:55267103-55267122 MS.gene59772:intron 45.0%
ATATCAGAGGGAAAGCTGGT+AGG - chr8.3:55268662-55268681 None:intergenic 45.0%
ATGGATGGTCTGTTGTCTCA+AGG + chr8.3:55269857-55269876 MS.gene59772:CDS 45.0%
ATTTGGCCTAAGCCTGAGTT+TGG - chr8.3:55268805-55268824 None:intergenic 45.0%
CAAGCATTCACCGAAGGAAT+TGG + chr8.3:55266421-55266440 MS.gene59772:CDS 45.0%
CGCAAGTCTAAGTTTCAGAG+AGG + chr8.3:55268587-55268606 MS.gene59772:intron 45.0%
CGTAATCCAGCTGCTTATTC+TGG + chr8.3:55267867-55267886 MS.gene59772:CDS 45.0%
GAAAGGATATTCTCCCAACC+CGG - chr8.3:55269206-55269225 None:intergenic 45.0%
GAGGTGTGAAGGAATATCAG+AGG - chr8.3:55268675-55268694 None:intergenic 45.0%
GCTTGGTTCACTCAATCCAA+AGG + chr8.3:55266547-55266566 MS.gene59772:CDS 45.0%
GGCCATACCACTTCAAATGT+GGG + chr8.3:55267104-55267123 MS.gene59772:intron 45.0%
GGCCCAACCAAAATGCTATA+TGG - chr8.3:55267238-55267257 None:intergenic 45.0%
GGCCTAACTCATCCTTACAA+AGG + chr8.3:55267254-55267273 MS.gene59772:intron 45.0%
GTCAGTTAGACGCATAGGAT+GGG - chr8.3:55268708-55268727 None:intergenic 45.0%
TCACTTCAAGCATTCACCGA+AGG + chr8.3:55266415-55266434 MS.gene59772:CDS 45.0%
TCCACTGTGGTTATTGACAG+TGG + chr8.3:55268868-55268887 MS.gene59772:intron 45.0%
TGGATTGAGTGAACCAAGCA+AGG - chr8.3:55266546-55266565 None:intergenic 45.0%
TGGTTTATTGAGGGGAGGAA+GGG - chr8.3:55269345-55269364 None:intergenic 45.0%
TGTTTATAAGTGGCCGAGTG+GGG - chr8.3:55267076-55267095 None:intergenic 45.0%
TTAGGGGACTAAATTGACCG+AGG + chr8.3:55267466-55267485 MS.gene59772:intron 45.0%
TTGCCCAACGGATCTTGAAT+AGG + chr8.3:55267204-55267223 MS.gene59772:intron 45.0%
TTTAGGGACTGCTTGATACC+GGG + chr8.3:55268987-55269006 MS.gene59772:intron 45.0%
TTTGGCCTAAGCCTGAGTTT+GGG - chr8.3:55268804-55268823 None:intergenic 45.0%
! ACTCATTTTCAACGGCGGTT+CGG - chr8.3:55266474-55266493 None:intergenic 45.0%
! AGTCCTAGAAGTGACTTGTG+AGG - chr8.3:55267146-55267165 None:intergenic 45.0%
! CCCATTAACTGCCTTGTTCA+TGG - chr8.3:55269791-55269810 None:intergenic 45.0%
! CTTTAGGGACTGCTTGATAC+CGG + chr8.3:55268986-55269005 MS.gene59772:intron 45.0%
! GTCCCACATTTGAAGTGGTA+TGG - chr8.3:55267109-55267128 None:intergenic 45.0%
! GTCCTAGAAGTGACTTGTGA+GGG - chr8.3:55267145-55267164 None:intergenic 45.0%
! TAAGCTGGTTTATTGAGGGG+AGG - chr8.3:55269350-55269369 None:intergenic 45.0%
! TCCAGCCCACTCATTTTCAA+CGG - chr8.3:55266482-55266501 None:intergenic 45.0%
! TCCTAGAAGTGACTTGTGAG+GGG - chr8.3:55267144-55267163 None:intergenic 45.0%
! TGAAGATGGTAGCGATGAAC+AGG + chr8.3:55266744-55266763 MS.gene59772:CDS 45.0%
!! TGAGAGATGCTAGAGGTGTT+TGG - chr8.3:55268771-55268790 None:intergenic 45.0%
!!! AGGTTTTATTAGGCCGGGTT+GGG + chr8.3:55269190-55269209 MS.gene59772:intron 45.0%
!!! TTGGTTTGGTTTTGAGCCGT+TGG + chr8.3:55266440-55266459 MS.gene59772:CDS 45.0%
!!! TTTGGTTTTGAGCCGTTGGT+CGG + chr8.3:55266444-55266463 MS.gene59772:CDS 45.0%
AAGGGTGGGAGAGAAACATG+GGG - chr8.3:55268745-55268764 None:intergenic 50.0%
AGCACGTCAGTTAGACGCAT+AGG - chr8.3:55268713-55268732 None:intergenic 50.0%
CAAAGGGTGGGAGAGAAACA+TGG - chr8.3:55268747-55268766 None:intergenic 50.0%
CAAGCAAGGAAGCCTGAGTA+TGG - chr8.3:55269255-55269274 None:intergenic 50.0%
CATCCATCATCTCCTTCACC+TGG - chr8.3:55269844-55269863 None:intergenic 50.0%
CATGTTTCTCTCCCACCCTT+TGG + chr8.3:55268745-55268764 MS.gene59772:intron 50.0%
CGTCAGTTAGACGCATAGGA+TGG - chr8.3:55268709-55268728 None:intergenic 50.0%
CTGGTTTATTGAGGGGAGGA+AGG - chr8.3:55269346-55269365 None:intergenic 50.0%
GAACCAAGCAAGGACATCAG+CGG - chr8.3:55266536-55266555 None:intergenic 50.0%
GAACCGCCGTTGAAAATGAG+TGG + chr8.3:55266473-55266492 MS.gene59772:CDS 50.0%
GAATTCGTGCTCCCATACTC+AGG + chr8.3:55269240-55269259 MS.gene59772:intron 50.0%
GAGAGGTGATTGAGGTGTGA+AGG - chr8.3:55268686-55268705 None:intergenic 50.0%
GAGGGAAAGCTGGTAGGAAA+TGG - chr8.3:55268656-55268675 None:intergenic 50.0%
GATGGTCTGTTGTCTCAAGG+AGG + chr8.3:55269860-55269879 MS.gene59772:CDS 50.0%
GGTGAGGATAATCCAGGTGA+AGG + chr8.3:55269829-55269848 MS.gene59772:CDS 50.0%
GGTTTATTGAGGGGAGGAAG+GGG - chr8.3:55269344-55269363 None:intergenic 50.0%
GTTTATAAGTGGCCGAGTGG+GGG - chr8.3:55267075-55267094 None:intergenic 50.0%
GTTTATTGAGGGGAGGAAGG+GGG - chr8.3:55269343-55269362 None:intergenic 50.0%
TAGGATGGGAGAGGTGATTG+AGG - chr8.3:55268694-55268713 None:intergenic 50.0%
TCACCTGGATTATCCTCACC+TGG - chr8.3:55269829-55269848 None:intergenic 50.0%
TCCCCTCACAAGTCACTTCT+AGG + chr8.3:55267140-55267159 MS.gene59772:intron 50.0%
TGCACACCAGAATAAGCAGC+TGG - chr8.3:55267876-55267895 None:intergenic 50.0%
TGTAGCCAAGCCCAACTTGT+AGG + chr8.3:55269450-55269469 MS.gene59772:intron 50.0%
TTAGACGCATAGGATGGGAG+AGG - chr8.3:55268703-55268722 None:intergenic 50.0%
TTTATAAGTGGCCGAGTGGG+GGG - chr8.3:55267074-55267093 None:intergenic 50.0%
! AGCCCACTCATTTTCAACGG+CGG - chr8.3:55266479-55266498 None:intergenic 50.0%
! TCCTTTAAGCAAGGGTGCAC+CGG - chr8.3:55269164-55269183 None:intergenic 50.0%
! TGACGGAACTTGTTCCACTG+TGG + chr8.3:55268855-55268874 MS.gene59772:intron 50.0%
!! CAGGTGAAGGAGATGATGGA+TGG + chr8.3:55269842-55269861 MS.gene59772:CDS 50.0%
!! GCTAGAGGTGTTTGGCCAAA+GGG - chr8.3:55268763-55268782 None:intergenic 50.0%
!! TGCTAGAGGTGTTTGGCCAA+AGG - chr8.3:55268764-55268783 None:intergenic 50.0%
!!! CAGGTTTTATTAGGCCGGGT+TGG + chr8.3:55269189-55269208 MS.gene59772:intron 50.0%
ACGCGCACTTTCCCAAACTC+AGG + chr8.3:55268790-55268809 MS.gene59772:intron 55.0%
AGGAAGGTGGCTAGCAAGCA+AGG - chr8.3:55269269-55269288 None:intergenic 55.0%
AGGGTGGGAGAGAAACATGG+GGG - chr8.3:55268744-55268763 None:intergenic 55.0%
CCTGACAGCAAGTTGCCCAA+CGG + chr8.3:55267192-55267211 MS.gene59772:intron 55.0%
CTGGGGAGAATGTAGGAAGG+TGG - chr8.3:55269282-55269301 None:intergenic 55.0%
GCCGTTGAAAATGAGTGGGC+TGG + chr8.3:55266478-55266497 MS.gene59772:CDS 55.0%
TCAGCCGGAAAATCCAGGTG+AGG + chr8.3:55269813-55269832 MS.gene59772:CDS 55.0%
TCCGGTGCACCCTTGCTTAA+AGG + chr8.3:55269160-55269179 MS.gene59772:intron 55.0%
! GAGGTGTTTGGCCAAAGGGT+GGG - chr8.3:55268759-55268778 None:intergenic 55.0%
! GGCAGTTAATGGGTCTCAGC+CGG + chr8.3:55269798-55269817 MS.gene59772:CDS 55.0%
!! AGAGGTGTTTGGCCAAAGGG+TGG - chr8.3:55268760-55268779 None:intergenic 55.0%
CAAGGACATCAGCGGCGAGT+TGG - chr8.3:55266528-55266547 None:intergenic 60.0%
GGGTCTCAGCCGGAAAATCC+AGG + chr8.3:55269808-55269827 MS.gene59772:CDS 60.0%
GGGTGGGAGAGAAACATGGG+GGG - chr8.3:55268743-55268762 None:intergenic 60.0%
GTGCGCGTGAGAGATGCTAG+AGG - chr8.3:55268778-55268797 None:intergenic 60.0%
TCGCCGCTGATGTCCTTGCT+TGG + chr8.3:55266530-55266549 MS.gene59772:CDS 60.0%
TGAGGGGAGGAAGGGGGTAA+TGG - chr8.3:55269337-55269356 None:intergenic 60.0%
!! CCGTTGGGCAACTTGCTGTC+AGG - chr8.3:55267195-55267214 None:intergenic 60.0%
!! CGGCGAGTTGGTGAGCTTTG+AGG - chr8.3:55266516-55266535 None:intergenic 60.0%
GTGAGGACTGTCCCCCCACT+CGG + chr8.3:55267060-55267079 MS.gene59772:intron 65.0%
! GGAGGAAGGGGGTAATGGCC+AGG - chr8.3:55269332-55269351 None:intergenic 65.0%
!! CGGTTCGGAGCGCCGACCAA+CGG - chr8.3:55266459-55266478 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 55266385 55269906 55266385 ID=MS.gene59772
chr8.3 mRNA 55266385 55269906 55266385 ID=MS.gene59772.t1;Parent=MS.gene59772
chr8.3 exon 55266385 55266568 55266385 ID=MS.gene59772.t1.exon1;Parent=MS.gene59772.t1
chr8.3 CDS 55266385 55266568 55266385 ID=cds.MS.gene59772.t1;Parent=MS.gene59772.t1
chr8.3 exon 55266677 55266765 55266677 ID=MS.gene59772.t1.exon2;Parent=MS.gene59772.t1
chr8.3 CDS 55266677 55266765 55266677 ID=cds.MS.gene59772.t1;Parent=MS.gene59772.t1
chr8.3 exon 55267786 55267899 55267786 ID=MS.gene59772.t1.exon3;Parent=MS.gene59772.t1
chr8.3 CDS 55267786 55267899 55267786 ID=cds.MS.gene59772.t1;Parent=MS.gene59772.t1
chr8.3 exon 55269679 55269906 55269679 ID=MS.gene59772.t1.exon4;Parent=MS.gene59772.t1
chr8.3 CDS 55269679 55269906 55269679 ID=cds.MS.gene59772.t1;Parent=MS.gene59772.t1
Gene Sequence

>MS.gene59772

ATGACGAATCCTAACAAGCTACAAGGACAATCACTTCAAGCATTCACCGAAGGAATTGGTTTGGTTTTGAGCCGTTGGTCGGCGCTCCGAACCGCCGTTGAAAATGAGTGGGCTGGACGTGACACTAACCTCAAAGCTCACCAACTCGCCGCTGATGTCCTTGCTTGGTTCACTCAATCCAAAGGTATTGTAATTAATCACTTAATTCCTGTTTTTTTAATTGTTTAAGCTTGAATTTTATGATATTCTGATTTTTCATTCATTGTTTTTTTTTTTCTTTTCCTCTTCACAGAAACGCTTTATATTGATGACCTTGAAAACTTACTCTATCAAGGAGGGCTTTCTGTCAATATAGTGATTGAAGATGGTAGCGATGAACAGGTCTTCATTTTCATTTTTTATTTAAATTATGTATTTGTTTTTGGAATATTACTTTACTGGTTAATTGTTAACTTTGCTAATCAATGATTTAAACTGTGAATAATTTGGTATCACAATGCATTGTGATCTTGTAGAAGCTCCAAAGTGTTGCTCTTATAAAATTACGGTGACTTGTCGTGATTATGTCAAACTCACTATGAATCCACAAATGTTTCCTCAATTGCAGTTATAGTGATATAAAACTATTAGAATTTGGGTTGGGCCTAATTCAACCTTATAAAACCGGAATGTAAGGTGAGGACTGTCCCCCCACTCGGCCACTTATAAACAATTGTTCAGGCCATACCACTTCAAATGTGGGACTCTTAATATAATCCCCTCACAAGTCACTTCTAGGACTAGATATTTGGAGCATGATCTGAATGGCCTGACAGCAAGTTGCCCAACGGATCTTGAATAGGCTATGATACCATATAGCATTTTGGTTGGGCCTAACTCATCCTTACAAAGGGACTCATAAACAAAAGCATTGATGTTTGGCCTAAATTGAGATCATTGACCCTTCTTCTAATAACAATTTGGAAATTAGTCAAATGGGCAAACGACATTTTAGTCTTTGAATGTGTGAAGCCCTGTCAATATAGTCCCTAAACATGTTAAAATTGCAAACATGTCCCTAGTGCCTCTTTTGTTAGTAATTTTAGGGGACTAAATTGACCGAGGAAAAACACATTCAAGGACTAAATTGGCTACTTAAAAACAAATTTGATGATCAAAATGACTAATAAAAAAAACATGTGAAGATGTTTTTTGTTTTTTTTGCCATTTCGATTCATTCAGGACCAATATGACAGCAAGTTACACTTATAGGGACCAAAACAGTGATTTTCCCTTGGTCAAATAGAATTTGTGCTTTGCATGTTCTGCTGACTAGTTACTTGTTGAAGATACATGCATGTATGTTGTGTCTGCATTGTTTGCGTGTTCTTACTTTTTTTGTACATGTTTGTGATAATACAGGTAGCTGAAGACCTAATGATTATGTACGGAGAATGTTTAGAAGGTAATTTTAGCTCTGTTGAGCGTCTCAGAGAAGCTAGTCGTAATCCAGCTGCTTATTCTGGTGTGCAAAAGGTAAATTAAGGCACAATGCATTTGGAATGGAAATTAACTGTTTTATTATTAGATTTGCAATATCAAATTTGTAGGGTATGTGTTTGATTGATTTAGGATTTCAATTTCTACATGATGGCGTATTTTAGGAGGAAAGAATATTGAATTATTACTTGATGTGTTGTGTGTTTTGGTTGTGTTCTATTCTATAACTTTGTATGCTACACGGCTATGAAAGAATGTGATGCTGCCTCGCATTATTGTGTGTTATCGGGTTTGATTAAAATAGTGCACAGAAAGTGCACTCTTTACTCAGTTCGCTATGATACATTAGTCTCATTAGCATCTTTTAGTGCTCTAGAAATATCTCTTCTATGCTATATATAGATAGACACAAACTCTAGTCTTATTGGCATCCTTTGTTGGAGTACGCTAGATATGTTCTATACTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACAAATTTATTGGAGTGCTGAAATGTATTCGTAAATAAGTTGAGAGTTATTATATTTCTCTGCATTAGAAATTAGGTTAAAGCTACCGTGCTTTTTGTGAGTTTATGCTTCCTTGCTTTCACTGACAAAAACAGTGAAGAGATGCGAACGTGTGTATTTAAGTTTGATAGTACTGTAAATCCTCTAATGATGAGAAATTGTTTGGAAGACGCAAGTCTAAGTTTCAGAGAGGCACTCCTTTGTCAACATAATTTTAAACAATTTTTTTCCCTGTACCATTTCCTACCAGCTTTCCCTCTGATATTCCTTCACACCTCAATCACCTCTCCCATCCTATGCGTCTAACTGACGTGCTTCTAAATCCCCCCATGTTTCTCTCCCACCCTTTGGCCAAACACCTCTAGCATCTCTCACGCGCACTTTCCCAAACTCAGGCTTAGGCCAAATATCTCCATTAGCTGTTGATACATTAGCTGTTGACGGAACTTGTTCCACTGTGGTTATTGACAGTGGTATTGAAGAATCGGATGAAAATTATAATCTTTTCTTCATGATATCTGTGATATGATATAAACTGCTCTTACACCGTGTTAAAAAGAAATGATCAACTTTAGGGACTGCTTGATACCGGGATTGAACGCTGTTGATTAAATTACTTATTCTGTCTACGAGTATGATATTATTATTTTGTTTGGCTTTTTGGATATTTAGGTTTATATAGAGGTCTTGACAGCAAAAATTTAGAGGCTTTTGATGACTCACGGAGTATTTGAGTTTGAGTTTCCGGTGCACCCTTGCTTAAAGGATATTTCAGGTTTTATTAGGCCGGGTTGGGAGAATATCCTTTCAAGAGAAGTACTCAGAATTCGTGCTCCCATACTCAGGCTTCCTTGCTTGCTAGCCACCTTCCTACATTCTCCCCAGTTTTTAAGCCATTATTTCTTTTTAATTCCTGGCCATTACCCCCTTCCTCCCCTCAATAAACCAGCTTACATCAAACCATTAATTAGATGGAAATGTTCTTTCTGTGAACCTAATATAACATTGTGTAATTGTAACTTTGATGGTTCTATGTAGCCAAGCCCAACTTGTAGGAAAATACTTGGTTGTTGATTTTCTTGTGAACACCTATTATAGTTGATTTCCTGACATGAGACTAAATGACAGTAATTGTAAATTTGTTATATATGTTAATTTAGCATTTTTGGTTTATGGATACACATTTTTCCTTGATTACACATGTCATGAGTGCAATTAGATACTTTCATTGAATAATTTTTGAACATTTTATGCTGTGCTAGATTGTGAATGGCAATGGAGACGAAGATGATGATTCTGATGATAACACCGAGGACGATAATTCAGCAAACATGGATGTGGACATTCCAAAATCCGAATCTAACTTGAATTCCATGAACAAGGCAGTTAATGGGTCTCAGCCGGAAAATCCAGGTGAGGATAATCCAGGTGAAGGAGATGATGGATGGTCTGTTGTCTCAAGGAGGAAAAATAAGGGCAGAAAGAATTAG

Protein sequence

>MS.gene59772.t1

MTNPNKLQGQSLQAFTEGIGLVLSRWSALRTAVENEWAGRDTNLKAHQLAADVLAWFTQSKETLYIDDLENLLYQGGLSVNIVIEDGSDEQVAEDLMIMYGECLEGNFSSVERLREASRNPAAYSGVQKIVNGNGDEDDDSDDNTEDDNSANMDVDIPKSESNLNSMNKAVNGSQPENPGEDNPGEGDDGWSVVSRRKNKGRKN