Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022249.t1 | XP_013461067.1 | 100 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022249.t1 | O82528 | 88.2 | 204 | 24 | 0 | 1 | 204 | 1 | 204 | 2.2e-100 | 366.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022249.t1 | I3T9M3 | 100.0 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 3.1e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074400 | MS.gene022249 | PPI |
| MS.gene70579 | MS.gene022249 | PPI |
| MS.gene067362 | MS.gene022249 | PPI |
| MS.gene036800 | MS.gene022249 | PPI |
| MS.gene022249 | MS.gene25903 | PPI |
| MS.gene002484 | MS.gene022249 | PPI |
| MS.gene59047 | MS.gene022249 | PPI |
| MS.gene01057 | MS.gene022249 | PPI |
| MS.gene038837 | MS.gene022249 | PPI |
| MS.gene022249 | MS.gene047337 | PPI |
| MS.gene61498 | MS.gene022249 | PPI |
| MS.gene01456 | MS.gene022249 | PPI |
| MS.gene045843 | MS.gene022249 | PPI |
| MS.gene62426 | MS.gene022249 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022249.t1 | MTR_3g078653 | 100.000 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 8.57e-150 | 414 |
| MS.gene022249.t1 | MTR_2g014220 | 99.510 | 204 | 1 | 0 | 1 | 204 | 49 | 252 | 2.38e-149 | 415 |
| MS.gene022249.t1 | MTR_7g026915 | 94.915 | 59 | 3 | 0 | 1 | 59 | 1 | 59 | 3.81e-33 | 125 |
| MS.gene022249.t1 | MTR_7g026915 | 87.500 | 64 | 8 | 0 | 1 | 64 | 1 | 64 | 1.52e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022249.t1 | AT4G16720 | 88.235 | 204 | 24 | 0 | 1 | 204 | 1 | 204 | 8.64e-122 | 343 |
| MS.gene022249.t1 | AT4G17390 | 87.745 | 204 | 25 | 0 | 1 | 204 | 1 | 204 | 1.80e-121 | 342 |
Find 82 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATATTTCGAGGTCATTT+TGG | 0.206004 | 3.3:-66602790 | MS.gene022249:CDS |
| GTTTCCAAGGGTATTGTTTA+TGG | 0.211521 | 3.3:-66603039 | MS.gene022249:CDS |
| TCCTGACAAGGCTCGCCGTT+TGG | 0.286229 | 3.3:-66603993 | MS.gene022249:CDS |
| GACGGAAACTTGGTGGTCTT+AGG | 0.302259 | 3.3:-66602942 | MS.gene022249:CDS |
| TTGGTGAGCCAGTTGATTCT+TGG | 0.307622 | 3.3:+66602735 | None:intergenic |
| CCTGACAAGGCTCGCCGTTT+GGG | 0.317524 | 3.3:-66603992 | MS.gene022249:CDS |
| AGTTCCCTGTGCTTGTGGAC+TGG | 0.331698 | 3.3:+66602711 | None:intergenic |
| GTTCCCTGTGCTTGTGGACT+GGG | 0.349720 | 3.3:+66602712 | None:intergenic |
| TTAGGGTTCTCAATTCCTAC+TGG | 0.365103 | 3.3:-66602924 | MS.gene022249:CDS |
| TGGTGAGCCAGTTGATTCTT+GGG | 0.374689 | 3.3:+66602736 | None:intergenic |
| TAAACAATACCCTTGGAAAC+TGG | 0.377401 | 3.3:+66603042 | None:intergenic |
| GTCCATCCCGCAGGGCAAAC+TGG | 0.385467 | 3.3:-66602617 | MS.gene022249:CDS |
| TCTCTTCCAGTTTGCCCTGC+GGG | 0.386069 | 3.3:+66602611 | None:intergenic |
| TGGGTAACTCCTTGGTTGGT+GGG | 0.388511 | 3.3:+66603012 | None:intergenic |
| TGCGGGATGGACGGGCTTTG+TGG | 0.407354 | 3.3:+66602628 | None:intergenic |
| TCATGCAACGTGTGAGGTGC+TGG | 0.410863 | 3.3:-66604063 | MS.gene022249:CDS |
| TGCTCCTTTGAAACTTGAGT+TGG | 0.414015 | 3.3:+66602992 | None:intergenic |
| AACGGTAACGGCGGAGAGAC+AGG | 0.416120 | 3.3:+66602580 | None:intergenic |
| GTTTGCCCTGCGGGATGGAC+GGG | 0.417367 | 3.3:+66602620 | None:intergenic |
| TAGCTCAGAAACATACTTGT+AGG | 0.420670 | 3.3:+66604117 | None:intergenic |
| CCCAAACGGCGAGCCTTGTC+AGG | 0.428600 | 3.3:+66603992 | None:intergenic |
| GGCTCGCCGTTTGGGTTACA+AGG | 0.429123 | 3.3:-66603984 | MS.gene022249:CDS |
| AGTTTGCCCTGCGGGATGGA+CGG | 0.430262 | 3.3:+66602619 | None:intergenic |
| ACGGAAACTTGGTGGTCTTA+GGG | 0.442931 | 3.3:-66602941 | MS.gene022249:CDS |
| AATGACCTCGAAATATTTGA+AGG | 0.445755 | 3.3:+66602794 | None:intergenic |
| CTTCGTGGTCTCACTTCTGC+TGG | 0.448020 | 3.3:-66602690 | MS.gene022249:CDS |
| CTTGTCAGGACGAGTGGGTC+TGG | 0.448800 | 3.3:+66604006 | None:intergenic |
| TTGGGTAACTCCTTGGTTGG+TGG | 0.451361 | 3.3:+66603011 | None:intergenic |
| TTCAGGGATATGTCGTGTAC+CGG | 0.459370 | 3.3:-66603095 | MS.gene022249:intron |
| TTCCAGTTTGCCCTGCGGGA+TGG | 0.461159 | 3.3:+66602615 | None:intergenic |
| CACGAAGTTCCCTGTGCTTG+TGG | 0.463265 | 3.3:+66602706 | None:intergenic |
| TCTGCTGGAAAAGAAAATAG+AGG | 0.467062 | 3.3:-66602675 | MS.gene022249:CDS |
| ATGGACGGGCTTTGTGGTAA+CGG | 0.472327 | 3.3:+66602634 | None:intergenic |
| GCTCCTTTGAAACTTGAGTT+GGG | 0.480540 | 3.3:+66602993 | None:intergenic |
| TCTGGTGAGACGAACGATAG+AGG | 0.481896 | 3.3:+66604024 | None:intergenic |
| TTCTACCTTCAAATATTTCG+AGG | 0.494616 | 3.3:-66602799 | MS.gene022249:CDS |
| CCAACCCAGTCCACAAGCAC+AGG | 0.501162 | 3.3:-66602716 | MS.gene022249:CDS |
| TACGCAGAGGTGGTAGGAAG+AGG | 0.502186 | 3.3:-66603065 | MS.gene022249:CDS |
| TTTGGGTTACAAGGCTAAGC+AGG | 0.502645 | 3.3:-66603975 | MS.gene022249:intron |
| ACAAAGCCCGTCCATCCCGC+AGG | 0.505243 | 3.3:-66602626 | MS.gene022249:CDS |
| ACTTGAGTTGGGTAACTCCT+TGG | 0.508713 | 3.3:+66603004 | None:intergenic |
| ACAAGTATGTTTCTGAGCTA+TGG | 0.512701 | 3.3:-66604114 | MS.gene022249:CDS |
| GAGCGTGCTGGACGGAAACT+TGG | 0.514923 | 3.3:-66602952 | MS.gene022249:CDS |
| CTTACCATAAACAATACCCT+TGG | 0.531543 | 3.3:+66603035 | None:intergenic |
| CCTGTGCTTGTGGACTGGGT+TGG | 0.541785 | 3.3:+66602716 | None:intergenic |
| TAGGAAGAGGCCAGTTTCCA+AGG | 0.541808 | 3.3:-66603052 | MS.gene022249:CDS |
| GATATGTCGTGTACCGGGTG+AGG | 0.542902 | 3.3:-66603089 | MS.gene022249:CDS |
| GCGAGCCTTGTCAGGACGAG+TGG | 0.547527 | 3.3:+66604000 | None:intergenic |
| GAAATGACCCAAGAATCAAC+TGG | 0.550461 | 3.3:-66602743 | MS.gene022249:CDS |
| TGAGGGTACGCAGAGGTGGT+AGG | 0.551486 | 3.3:-66603071 | MS.gene022249:CDS |
| TCCGTCGCTGAAGAGCGTGC+TGG | 0.554588 | 3.3:-66602964 | MS.gene022249:CDS |
| TAGGGTTCTCAATTCCTACT+GGG | 0.560974 | 3.3:-66602923 | MS.gene022249:CDS |
| CAATTCCTACTGGGTCAATG+AGG | 0.563819 | 3.3:-66602914 | MS.gene022249:intron |
| GAGTTGGGTAACTCCTTGGT+TGG | 0.565840 | 3.3:+66603008 | None:intergenic |
| CGTGCTGGACGGAAACTTGG+TGG | 0.567450 | 3.3:-66602949 | MS.gene022249:CDS |
| CACCTCTGCGTACCCTCACC+CGG | 0.571516 | 3.3:+66603076 | None:intergenic |
| TTACCCAACTCAAGTTTCAA+AGG | 0.573525 | 3.3:-66602996 | MS.gene022249:CDS |
| TCAGGGATATGTCGTGTACC+GGG | 0.582732 | 3.3:-66603094 | MS.gene022249:intron |
| AATAGAGGTTTGAGTGGCAA+GGG | 0.585122 | 3.3:-66602660 | MS.gene022249:CDS |
| TCCAGCACGCTCTTCAGCGA+CGG | 0.585150 | 3.3:+66602963 | None:intergenic |
| TTCTCTTCCAGTTTGCCCTG+CGG | 0.587901 | 3.3:+66602610 | None:intergenic |
| AAATAGAGGTTTGAGTGGCA+AGG | 0.588102 | 3.3:-66602661 | MS.gene022249:CDS |
| AAAGAAAATAGAGGTTTGAG+TGG | 0.595531 | 3.3:-66602666 | MS.gene022249:CDS |
| CATGCAACGTGTGAGGTGCT+GGG | 0.596458 | 3.3:-66604062 | MS.gene022249:CDS |
| TCAAGTTTCAAAGGAGCAAG+AGG | 0.596680 | 3.3:-66602987 | MS.gene022249:CDS |
| TCGCTGAAGAGCGTGCTGGA+CGG | 0.597082 | 3.3:-66602960 | MS.gene022249:CDS |
| TATGGTAAGCCCACCAACCA+AGG | 0.598107 | 3.3:-66603021 | MS.gene022249:CDS |
| CACAAGCACAGGGAACTTCG+TGG | 0.600876 | 3.3:-66602705 | MS.gene022249:CDS |
| CAGACCCACTCGTCCTGACA+AGG | 0.605906 | 3.3:-66604005 | MS.gene022249:CDS |
| CGGGTGAGGGTACGCAGAGG+TGG | 0.609715 | 3.3:-66603075 | MS.gene022249:CDS |
| TGCAGTAAAATCAACGGTAA+CGG | 0.618711 | 3.3:+66602568 | None:intergenic |
| CAAAGCCCGTCCATCCCGCA+GGG | 0.619537 | 3.3:-66602625 | MS.gene022249:CDS |
| AGGAAGAGGCCAGTTTCCAA+GGG | 0.629174 | 3.3:-66603051 | MS.gene022249:CDS |
| GCTTAGCCTTGTAACCCAAA+CGG | 0.629228 | 3.3:+66603978 | None:intergenic |
| CAACCCAGTCCACAAGCACA+GGG | 0.632139 | 3.3:-66602715 | MS.gene022249:CDS |
| ATATGTCGTGTACCGGGTGA+GGG | 0.637020 | 3.3:-66603088 | MS.gene022249:CDS |
| ACGGTAACGGCGGAGAGACA+GGG | 0.637745 | 3.3:+66602581 | None:intergenic |
| CGAGCCTTGTCAGGACGAGT+GGG | 0.641692 | 3.3:+66604001 | None:intergenic |
| ACAAACCTCATTGACCCAGT+AGG | 0.645250 | 3.3:+66602909 | None:intergenic |
| AGTAAAATCAACGGTAACGG+CGG | 0.665793 | 3.3:+66602571 | None:intergenic |
| TACCGGGTGAGGGTACGCAG+AGG | 0.698900 | 3.3:-66603078 | MS.gene022249:CDS |
| TGCGATTCATGCAACGTGTG+AGG | 0.718067 | 3.3:-66604069 | MS.gene022249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGTCATTTTTTTTAAAA+TGG | - | chr3.3:66603066-66603085 | MS.gene022249:CDS | 10.0% |
| !!! | TAAGTCATTTTTTTTAAAAT+GGG | - | chr3.3:66603067-66603086 | MS.gene022249:CDS | 10.0% |
| !! | AAATTTCATATTCATATAGA+AGG | - | chr3.3:66603242-66603261 | MS.gene022249:intron | 15.0% |
| !! | ATCAAACATTAACAAAAATT+TGG | + | chr3.3:66603347-66603366 | None:intergenic | 15.0% |
| !!! | GTTTGTATTTTTATTTTTAC+TGG | - | chr3.3:66603479-66603498 | MS.gene022249:intron | 15.0% |
| !! | TACTAAGAATTAATCACTTA+GGG | - | chr3.3:66602958-66602977 | MS.gene022249:CDS | 20.0% |
| !! | TTACTAAGAATTAATCACTT+AGG | - | chr3.3:66602957-66602976 | MS.gene022249:CDS | 20.0% |
| !!! | TTTTTAAAATGGGTTTCAAA+TGG | - | chr3.3:66603077-66603096 | MS.gene022249:CDS | 20.0% |
| !! | ACAAAAAATTGATAGTCTCT+AGG | + | chr3.3:66603311-66603330 | None:intergenic | 25.0% |
| !! | TGATTAGTTGAAGTTCAATT+TGG | - | chr3.3:66603925-66603944 | MS.gene022249:intron | 25.0% |
| !!! | TAGAGACTATCAATTTTTTG+TGG | - | chr3.3:66603310-66603329 | MS.gene022249:intron | 25.0% |
| !!! | TGTTGTTGTTATTTGTGAAT+AGG | - | chr3.3:66602660-66602679 | MS.gene022249:CDS | 25.0% |
| AAAGAAAATAGAGGTTTGAG+TGG | - | chr3.3:66604136-66604155 | MS.gene022249:intron | 30.0% | |
| AATGACCTCGAAATATTTGA+AGG | + | chr3.3:66604011-66604030 | None:intergenic | 30.0% | |
| ATCATACAGAAACAAAAGCA+TGG | + | chr3.3:66602612-66602631 | None:intergenic | 30.0% | |
| CATGTTTACAAAATGAAGCA+AGG | + | chr3.3:66603660-66603679 | None:intergenic | 30.0% | |
| GTAATTGTCACATCATTTCA+GGG | - | chr3.3:66603691-66603710 | MS.gene022249:intron | 30.0% | |
| GTAGCACAAAACAAAACAAT+GGG | + | chr3.3:66603979-66603998 | None:intergenic | 30.0% | |
| TAGCACAAAACAAAACAATG+GGG | + | chr3.3:66603978-66603997 | None:intergenic | 30.0% | |
| TGTAATTGTCACATCATTTC+AGG | - | chr3.3:66603690-66603709 | MS.gene022249:intron | 30.0% | |
| TGTAGCACAAAACAAAACAA+TGG | + | chr3.3:66603980-66603999 | None:intergenic | 30.0% | |
| TTCTACCTTCAAATATTTCG+AGG | - | chr3.3:66604003-66604022 | MS.gene022249:CDS | 30.0% | |
| ! | CAAATATTTCGAGGTCATTT+TGG | - | chr3.3:66604012-66604031 | MS.gene022249:CDS | 30.0% |
| !! | ATTTGTTCTTGTTGATTCTC+TGG | - | chr3.3:66602886-66602905 | MS.gene022249:intron | 30.0% |
| !! | GCAAATCACAAATTTTAGCA+AGG | + | chr3.3:66603533-66603552 | None:intergenic | 30.0% |
| !! | GCAATTGACAAATTTTAGCA+AGG | + | chr3.3:66603594-66603613 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGTTTTGTGCTAC+AGG | - | chr3.3:66603979-66603998 | MS.gene022249:CDS | 30.0% |
| ATGGAGAATTGAAGAGTAGA+TGG | + | chr3.3:66602593-66602612 | None:intergenic | 35.0% | |
| ATGGTTTACTAGTTAACACC+TGG | - | chr3.3:66603147-66603166 | MS.gene022249:intron | 35.0% | |
| CACAATGTGTTATGTCTTGT+TGG | - | chr3.3:66603432-66603451 | MS.gene022249:intron | 35.0% | |
| CTTACCATAAACAATACCCT+TGG | + | chr3.3:66603770-66603789 | None:intergenic | 35.0% | |
| TAAACAATACCCTTGGAAAC+TGG | + | chr3.3:66603763-66603782 | None:intergenic | 35.0% | |
| TAAACCATGAACAGCAGAAT+AGG | + | chr3.3:66603135-66603154 | None:intergenic | 35.0% | |
| TAGCTCAGAAACATACTTGT+AGG | + | chr3.3:66602688-66602707 | None:intergenic | 35.0% | |
| TCAATTTGGTTGTGATGTAC+TGG | - | chr3.3:66603939-66603958 | MS.gene022249:intron | 35.0% | |
| TCTGCTGGAAAAGAAAATAG+AGG | - | chr3.3:66604127-66604146 | MS.gene022249:intron | 35.0% | |
| TGGTTTACTAGTTAACACCT+GGG | - | chr3.3:66603148-66603167 | MS.gene022249:intron | 35.0% | |
| TTACCCAACTCAAGTTTCAA+AGG | - | chr3.3:66603806-66603825 | MS.gene022249:intron | 35.0% | |
| ! | ACAAGTATGTTTCTGAGCTA+TGG | - | chr3.3:66602688-66602707 | MS.gene022249:CDS | 35.0% |
| !! | GTTTCCAAGGGTATTGTTTA+TGG | - | chr3.3:66603763-66603782 | MS.gene022249:intron | 35.0% |
| AAATAGAGGTTTGAGTGGCA+AGG | - | chr3.3:66604141-66604160 | MS.gene022249:intron | 40.0% | |
| AATAGAGGTTTGAGTGGCAA+GGG | - | chr3.3:66604142-66604161 | MS.gene022249:intron | 40.0% | |
| GAAATGACCCAAGAATCAAC+TGG | - | chr3.3:66604059-66604078 | MS.gene022249:CDS | 40.0% | |
| TAGGGTTCTCAATTCCTACT+GGG | - | chr3.3:66603879-66603898 | MS.gene022249:intron | 40.0% | |
| TCAAGTTTCAAAGGAGCAAG+AGG | - | chr3.3:66603815-66603834 | MS.gene022249:intron | 40.0% | |
| TCATCCTATTCTGCTGTTCA+TGG | - | chr3.3:66603128-66603147 | MS.gene022249:intron | 40.0% | |
| TTACTAGTTAACACCTGGGT+GGG | - | chr3.3:66603152-66603171 | MS.gene022249:intron | 40.0% | |
| TTAGGGTTCTCAATTCCTAC+TGG | - | chr3.3:66603878-66603897 | MS.gene022249:intron | 40.0% | |
| TTTACTAGTTAACACCTGGG+TGG | - | chr3.3:66603151-66603170 | MS.gene022249:intron | 40.0% | |
| ! | ACACAAACAGCAGATTAGTC+TGG | + | chr3.3:66603371-66603390 | None:intergenic | 40.0% |
| !! | GCTCCTTTGAAACTTGAGTT+GGG | + | chr3.3:66603812-66603831 | None:intergenic | 40.0% |
| !! | TGCTCCTTTGAAACTTGAGT+TGG | + | chr3.3:66603813-66603832 | None:intergenic | 40.0% |
| ACAAACCTCATTGACCCAGT+AGG | + | chr3.3:66603896-66603915 | None:intergenic | 45.0% | |
| ATAGTCTCTAGGCCTGTACA+TGG | + | chr3.3:66603300-66603319 | None:intergenic | 45.0% | |
| CAATTCCTACTGGGTCAATG+AGG | - | chr3.3:66603888-66603907 | MS.gene022249:intron | 45.0% | |
| CATTGCTCAAGACCATGTAC+AGG | - | chr3.3:66603285-66603304 | MS.gene022249:intron | 45.0% | |
| GGGGCAGGAGTTACAATAAT+TGG | - | chr3.3:66603172-66603191 | MS.gene022249:intron | 45.0% | |
| GGTCTTGAGCAATGGTTCAA+AGG | + | chr3.3:66603279-66603298 | None:intergenic | 45.0% | |
| TACTAGTTAACACCTGGGTG+GGG | - | chr3.3:66603153-66603172 | MS.gene022249:intron | 45.0% | |
| TTCAGGGATATGTCGTGTAC+CGG | - | chr3.3:66603707-66603726 | MS.gene022249:intron | 45.0% | |
| ! | ACGGAAACTTGGTGGTCTTA+GGG | - | chr3.3:66603861-66603880 | MS.gene022249:intron | 45.0% |
| ! | CTGTACATGGTCTTGAGCAA+TGG | + | chr3.3:66603287-66603306 | None:intergenic | 45.0% |
| ! | TGGTGAGCCAGTTGATTCTT+GGG | + | chr3.3:66604069-66604088 | None:intergenic | 45.0% |
| ! | TTGGTGAGCCAGTTGATTCT+TGG | + | chr3.3:66604070-66604089 | None:intergenic | 45.0% |
| ! | TTTGGGTTACAAGGCTAAGC+AGG | - | chr3.3:66602827-66602846 | MS.gene022249:intron | 45.0% |
| ! | TTTGGTTGTGATGTACTGGC+TGG | - | chr3.3:66603943-66603962 | MS.gene022249:intron | 45.0% |
| !! | ACTTGAGTTGGGTAACTCCT+TGG | + | chr3.3:66603801-66603820 | None:intergenic | 45.0% |
| !! | GCTTAGCCTTGTAACCCAAA+CGG | + | chr3.3:66602827-66602846 | None:intergenic | 45.0% |
| AGGAAGAGGCCAGTTTCCAA+GGG | - | chr3.3:66603751-66603770 | MS.gene022249:intron | 50.0% | |
| ATATGTCGTGTACCGGGTGA+GGG | - | chr3.3:66603714-66603733 | MS.gene022249:intron | 50.0% | |
| GAGTTGGGTAACTCCTTGGT+TGG | + | chr3.3:66603797-66603816 | None:intergenic | 50.0% | |
| TAGGAAGAGGCCAGTTTCCA+AGG | - | chr3.3:66603750-66603769 | MS.gene022249:intron | 50.0% | |
| TATGGTAAGCCCACCAACCA+AGG | - | chr3.3:66603781-66603800 | MS.gene022249:intron | 50.0% | |
| TCAGGGATATGTCGTGTACC+GGG | - | chr3.3:66603708-66603727 | MS.gene022249:intron | 50.0% | |
| TCTGGTGAGACGAACGATAG+AGG | + | chr3.3:66602781-66602800 | None:intergenic | 50.0% | |
| TGCGATTCATGCAACGTGTG+AGG | - | chr3.3:66602733-66602752 | MS.gene022249:CDS | 50.0% | |
| TGGGTAACTCCTTGGTTGGT+GGG | + | chr3.3:66603793-66603812 | None:intergenic | 50.0% | |
| TTCTCTTCCAGTTTGCCCTG+CGG | + | chr3.3:66604195-66604214 | None:intergenic | 50.0% | |
| TTGGGTAACTCCTTGGTTGG+TGG | + | chr3.3:66603794-66603813 | None:intergenic | 50.0% | |
| ! | ATGGACGGGCTTTGTGGTAA+CGG | + | chr3.3:66604171-66604190 | None:intergenic | 50.0% |
| ! | GACGGAAACTTGGTGGTCTT+AGG | - | chr3.3:66603860-66603879 | MS.gene022249:intron | 50.0% |
| AGTTCCCTGTGCTTGTGGAC+TGG | + | chr3.3:66604094-66604113 | None:intergenic | 55.0% | |
| CAACCCAGTCCACAAGCACA+GGG | - | chr3.3:66604087-66604106 | MS.gene022249:CDS | 55.0% | |
| CACAAGCACAGGGAACTTCG+TGG | - | chr3.3:66604097-66604116 | MS.gene022249:CDS | 55.0% | |
| CACGAAGTTCCCTGTGCTTG+TGG | + | chr3.3:66604099-66604118 | None:intergenic | 55.0% | |
| CTTCGTGGTCTCACTTCTGC+TGG | - | chr3.3:66604112-66604131 | MS.gene022249:CDS | 55.0% | |
| GATATGTCGTGTACCGGGTG+AGG | - | chr3.3:66603713-66603732 | MS.gene022249:intron | 55.0% | |
| GTTCCCTGTGCTTGTGGACT+GGG | + | chr3.3:66604093-66604112 | None:intergenic | 55.0% | |
| TACGCAGAGGTGGTAGGAAG+AGG | - | chr3.3:66603737-66603756 | MS.gene022249:intron | 55.0% | |
| TCATGCAACGTGTGAGGTGC+TGG | - | chr3.3:66602739-66602758 | MS.gene022249:CDS | 55.0% | |
| TCTCTTCCAGTTTGCCCTGC+GGG | + | chr3.3:66604194-66604213 | None:intergenic | 55.0% | |
| ! | CATGCAACGTGTGAGGTGCT+GGG | - | chr3.3:66602740-66602759 | MS.gene022249:CDS | 55.0% |
| AGTTAACACCTGGGTGGGGC+AGG | - | chr3.3:66603157-66603176 | MS.gene022249:intron | 60.0% | |
| AGTTTGCCCTGCGGGATGGA+CGG | + | chr3.3:66604186-66604205 | None:intergenic | 60.0% | |
| CAGACCCACTCGTCCTGACA+AGG | - | chr3.3:66602797-66602816 | MS.gene022249:CDS | 60.0% | |
| CCAACCCAGTCCACAAGCAC+AGG | - | chr3.3:66604086-66604105 | MS.gene022249:CDS | 60.0% | |
| CCTGACAAGGCTCGCCGTTT+GGG | - | chr3.3:66602810-66602829 | MS.gene022249:intron | 60.0% | |
| CGTGCTGGACGGAAACTTGG+TGG | - | chr3.3:66603853-66603872 | MS.gene022249:intron | 60.0% | |
| CTTGTCAGGACGAGTGGGTC+TGG | + | chr3.3:66602799-66602818 | None:intergenic | 60.0% | |
| GAGCGTGCTGGACGGAAACT+TGG | - | chr3.3:66603850-66603869 | MS.gene022249:intron | 60.0% | |
| TCCAGCACGCTCTTCAGCGA+CGG | + | chr3.3:66603842-66603861 | None:intergenic | 60.0% | |
| TCCTGACAAGGCTCGCCGTT+TGG | - | chr3.3:66602809-66602828 | MS.gene022249:intron | 60.0% | |
| TTCCAGTTTGCCCTGCGGGA+TGG | + | chr3.3:66604190-66604209 | None:intergenic | 60.0% | |
| TTGTAACTCCTGCCCCACCC+AGG | + | chr3.3:66603168-66603187 | None:intergenic | 60.0% | |
| ! | AACGGTAACGGCGGAGAGAC+AGG | + | chr3.3:66604225-66604244 | None:intergenic | 60.0% |
| ! | ACGGTAACGGCGGAGAGACA+GGG | + | chr3.3:66604224-66604243 | None:intergenic | 60.0% |
| ! | CGAGCCTTGTCAGGACGAGT+GGG | + | chr3.3:66602804-66602823 | None:intergenic | 60.0% |
| ! | GGCTCGCCGTTTGGGTTACA+AGG | - | chr3.3:66602818-66602837 | MS.gene022249:intron | 60.0% |
| ! | TCGCTGAAGAGCGTGCTGGA+CGG | - | chr3.3:66603842-66603861 | MS.gene022249:intron | 60.0% |
| ! | TGAGGGTACGCAGAGGTGGT+AGG | - | chr3.3:66603731-66603750 | MS.gene022249:intron | 60.0% |
| !! | CCTGTGCTTGTGGACTGGGT+TGG | + | chr3.3:66604089-66604108 | None:intergenic | 60.0% |
| ACAAAGCCCGTCCATCCCGC+AGG | - | chr3.3:66604176-66604195 | MS.gene022249:intron | 65.0% | |
| CAAAGCCCGTCCATCCCGCA+GGG | - | chr3.3:66604177-66604196 | MS.gene022249:intron | 65.0% | |
| CACCTCTGCGTACCCTCACC+CGG | + | chr3.3:66603729-66603748 | None:intergenic | 65.0% | |
| GTCCATCCCGCAGGGCAAAC+TGG | - | chr3.3:66604185-66604204 | MS.gene022249:intron | 65.0% | |
| GTTTGCCCTGCGGGATGGAC+GGG | + | chr3.3:66604185-66604204 | None:intergenic | 65.0% | |
| ! | CCCAAACGGCGAGCCTTGTC+AGG | + | chr3.3:66602813-66602832 | None:intergenic | 65.0% |
| ! | GCGAGCCTTGTCAGGACGAG+TGG | + | chr3.3:66602805-66602824 | None:intergenic | 65.0% |
| ! | TACCGGGTGAGGGTACGCAG+AGG | - | chr3.3:66603724-66603743 | MS.gene022249:intron | 65.0% |
| ! | TCCGTCGCTGAAGAGCGTGC+TGG | - | chr3.3:66603838-66603857 | MS.gene022249:intron | 65.0% |
| ! | TGCGGGATGGACGGGCTTTG+TGG | + | chr3.3:66604177-66604196 | None:intergenic | 65.0% |
| ! | CGGGTGAGGGTACGCAGAGG+TGG | - | chr3.3:66603727-66603746 | MS.gene022249:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 66602578 | 66604246 | 66602578 | ID=MS.gene022249 |
| chr3.3 | mRNA | 66602578 | 66604246 | 66602578 | ID=MS.gene022249.t1;Parent=MS.gene022249 |
| chr3.3 | exon | 66604243 | 66604246 | 66604243 | ID=MS.gene022249.t1.exon1;Parent=MS.gene022249.t1 |
| chr3.3 | CDS | 66604243 | 66604246 | 66604243 | ID=cds.MS.gene022249.t1;Parent=MS.gene022249.t1 |
| chr3.3 | exon | 66603976 | 66604142 | 66603976 | ID=MS.gene022249.t1.exon2;Parent=MS.gene022249.t1 |
| chr3.3 | CDS | 66603976 | 66604142 | 66603976 | ID=cds.MS.gene022249.t1;Parent=MS.gene022249.t1 |
| chr3.3 | exon | 66602915 | 66603112 | 66602915 | ID=MS.gene022249.t1.exon3;Parent=MS.gene022249.t1 |
| chr3.3 | CDS | 66602915 | 66603112 | 66602915 | ID=cds.MS.gene022249.t1;Parent=MS.gene022249.t1 |
| chr3.3 | exon | 66602578 | 66602823 | 66602578 | ID=MS.gene022249.t1.exon4;Parent=MS.gene022249.t1 |
| chr3.3 | CDS | 66602578 | 66602823 | 66602578 | ID=cds.MS.gene022249.t1;Parent=MS.gene022249.t1 |
| Gene Sequence |
| Protein sequence |
