Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70579.t1 | XP_013461067.1 | 100 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70579.t1 | O82528 | 88.2 | 204 | 24 | 0 | 1 | 204 | 1 | 204 | 2.2e-100 | 366.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70579.t1 | I3T9M3 | 100.0 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 3.1e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene70579 | 0.858029 | 1.09E-62 | -1.69E-46 |
| MS.gene049361 | MS.gene70579 | 0.850437 | 1.70E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene70579 | 0.850377 | 1.77E-60 | -1.69E-46 |
| MS.gene050134 | MS.gene70579 | 0.907038 | 7.80E-81 | -1.69E-46 |
| MS.gene050791 | MS.gene70579 | 0.846796 | 1.73E-59 | -1.69E-46 |
| MS.gene050912 | MS.gene70579 | 0.823108 | 1.65E-53 | -1.69E-46 |
| MS.gene051925 | MS.gene70579 | 0.853957 | 1.69E-61 | -1.69E-46 |
| MS.gene051927 | MS.gene70579 | 0.823869 | 1.10E-53 | -1.69E-46 |
| MS.gene051984 | MS.gene70579 | 0.851992 | 6.18E-61 | -1.69E-46 |
| MS.gene052209 | MS.gene70579 | 0.850074 | 2.15E-60 | -1.69E-46 |
| MS.gene052664 | MS.gene70579 | 0.906115 | 2.09E-80 | -1.69E-46 |
| MS.gene052666 | MS.gene70579 | 0.889525 | 2.24E-73 | -1.69E-46 |
| MS.gene053224 | MS.gene70579 | 0.896243 | 4.45E-76 | -1.69E-46 |
| MS.gene054624 | MS.gene70579 | 0.842184 | 3.02E-58 | -1.69E-46 |
| MS.gene054662 | MS.gene70579 | 0.805085 | 1.58E-49 | -1.69E-46 |
| MS.gene055232 | MS.gene70579 | 0.800036 | 1.74E-48 | -1.69E-46 |
| MS.gene057272 | MS.gene70579 | 0.88563 | 6.89E-72 | -1.69E-46 |
| MS.gene057321 | MS.gene70579 | 0.850961 | 1.21E-60 | -1.69E-46 |
| MS.gene057641 | MS.gene70579 | 0.848851 | 4.71E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene70579 | 0.891634 | 3.32E-74 | -1.69E-46 |
| MS.gene059340 | MS.gene70579 | 0.8747 | 5.50E-68 | -1.69E-46 |
| MS.gene060483 | MS.gene70579 | 0.899942 | 1.20E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70579 | MS.gene022249 | PPI |
| MS.gene038837 | MS.gene70579 | PPI |
| MS.gene61498 | MS.gene70579 | PPI |
| MS.gene01456 | MS.gene70579 | PPI |
| MS.gene01057 | MS.gene70579 | PPI |
| MS.gene045843 | MS.gene70579 | PPI |
| MS.gene70579 | MS.gene25903 | PPI |
| MS.gene62426 | MS.gene70579 | PPI |
| MS.gene074400 | MS.gene70579 | PPI |
| MS.gene067362 | MS.gene70579 | PPI |
| MS.gene036800 | MS.gene70579 | PPI |
| MS.gene002484 | MS.gene70579 | PPI |
| MS.gene59047 | MS.gene70579 | PPI |
| MS.gene70579 | MS.gene047337 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70579.t1 | MTR_3g078653 | 100.000 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 8.57e-150 | 414 |
| MS.gene70579.t1 | MTR_2g014220 | 99.510 | 204 | 1 | 0 | 1 | 204 | 49 | 252 | 2.38e-149 | 415 |
| MS.gene70579.t1 | MTR_7g026915 | 94.915 | 59 | 3 | 0 | 1 | 59 | 1 | 59 | 3.81e-33 | 125 |
| MS.gene70579.t1 | MTR_7g026915 | 87.500 | 64 | 8 | 0 | 1 | 64 | 1 | 64 | 1.52e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70579.t1 | AT4G16720 | 88.235 | 204 | 24 | 0 | 1 | 204 | 1 | 204 | 8.64e-122 | 343 |
| MS.gene70579.t1 | AT4G17390 | 87.745 | 204 | 25 | 0 | 1 | 204 | 1 | 204 | 1.80e-121 | 342 |
Find 83 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATATTTCGAGGTCATTT+TGG | 0.206004 | 3.1:-64448935 | MS.gene70579:CDS |
| GTTTCCAAGGGTATTGTTTA+TGG | 0.211521 | 3.1:-64449185 | MS.gene70579:CDS |
| GACGGAAGCTTGGTGGTCTT+AGG | 0.284899 | 3.1:-64449088 | MS.gene70579:CDS |
| TCCTGACAAGGCTCGCCGTT+TGG | 0.286229 | 3.1:-64450070 | MS.gene70579:CDS |
| TTGGTGAGCCAGTTGATTCT+TGG | 0.307622 | 3.1:+64448880 | None:intergenic |
| CCTGACAAGGCTCGCCGTTT+GGG | 0.317524 | 3.1:-64450069 | MS.gene70579:CDS |
| AGTTCCCTGTGCTTGTGGAC+TGG | 0.331698 | 3.1:+64448856 | None:intergenic |
| GTTCCCTGTGCTTGTGGACT+GGG | 0.349720 | 3.1:+64448857 | None:intergenic |
| TTAGGGTTCTCAATTCCTAC+TGG | 0.365103 | 3.1:-64449070 | MS.gene70579:CDS |
| TGGTGAGCCAGTTGATTCTT+GGG | 0.374689 | 3.1:+64448881 | None:intergenic |
| TAAACAATACCCTTGGAAAC+TGG | 0.377401 | 3.1:+64449188 | None:intergenic |
| GTCCATCCCGCAGGGCAAAC+TGG | 0.385467 | 3.1:-64448762 | MS.gene70579:CDS |
| TCTCTTCCAGTTTGCCCTGC+GGG | 0.386069 | 3.1:+64448756 | None:intergenic |
| TGCGGGATGGACGGGCTTTG+TGG | 0.407354 | 3.1:+64448773 | None:intergenic |
| TCATGCAACGTGTGAGGTGC+TGG | 0.410863 | 3.1:-64450140 | MS.gene70579:CDS |
| TGCTCCTTTGAAACTTGAGT+TGG | 0.414015 | 3.1:+64449138 | None:intergenic |
| AACGGTAACGGCGGAGAGAC+AGG | 0.416120 | 3.1:+64448725 | None:intergenic |
| GTTTGCCCTGCGGGATGGAC+GGG | 0.417367 | 3.1:+64448765 | None:intergenic |
| TAGCTCAGAAACATACTTGT+AGG | 0.420670 | 3.1:+64450194 | None:intergenic |
| TGGGTAACTCCCTGGTTGGT+GGG | 0.428376 | 3.1:+64449158 | None:intergenic |
| CCCAAACGGCGAGCCTTGTC+AGG | 0.428600 | 3.1:+64450069 | None:intergenic |
| GGCTCGCCGTTTGGGTTACA+AGG | 0.429123 | 3.1:-64450061 | MS.gene70579:CDS |
| AGTTTGCCCTGCGGGATGGA+CGG | 0.430262 | 3.1:+64448764 | None:intergenic |
| TTCAGGGATATGTTGTGTAC+CGG | 0.437893 | 3.1:-64449241 | MS.gene70579:intron |
| AATGACCTCGAAATATTTGA+AGG | 0.445755 | 3.1:+64448939 | None:intergenic |
| CTTCGTGGTCTCACTTCTGC+TGG | 0.448020 | 3.1:-64448835 | MS.gene70579:CDS |
| CTTGTCAGGACGAGTGGGTC+TGG | 0.448800 | 3.1:+64450083 | None:intergenic |
| ACGGAAGCTTGGTGGTCTTA+GGG | 0.449544 | 3.1:-64449087 | MS.gene70579:CDS |
| TTCCAGTTTGCCCTGCGGGA+TGG | 0.461159 | 3.1:+64448760 | None:intergenic |
| CACGAAGTTCCCTGTGCTTG+TGG | 0.463265 | 3.1:+64448851 | None:intergenic |
| ATGGACGGGCTTTGTGGTAA+CGG | 0.472327 | 3.1:+64448779 | None:intergenic |
| TTGGGTAACTCCCTGGTTGG+TGG | 0.476932 | 3.1:+64449157 | None:intergenic |
| GCTCCTTTGAAACTTGAGTT+GGG | 0.480540 | 3.1:+64449139 | None:intergenic |
| TCTGGTGAGACGAACGATAG+AGG | 0.481896 | 3.1:+64450101 | None:intergenic |
| TTCTACCTTCAAATATTTCG+AGG | 0.494616 | 3.1:-64448944 | MS.gene70579:CDS |
| CCAACCCAGTCCACAAGCAC+AGG | 0.501162 | 3.1:-64448861 | MS.gene70579:CDS |
| CGTGCTGGACGGAAGCTTGG+TGG | 0.501934 | 3.1:-64449095 | MS.gene70579:CDS |
| TACGCAGAGGTGGTAGGAAG+AGG | 0.502186 | 3.1:-64449211 | MS.gene70579:CDS |
| TTTGGGTTACAAGGCTAAGC+AGG | 0.502645 | 3.1:-64450052 | MS.gene70579:intron |
| ACAAAGCCCGTCCATCCCGC+AGG | 0.505243 | 3.1:-64448771 | MS.gene70579:CDS |
| ACAAGTATGTTTCTGAGCTA+TGG | 0.512701 | 3.1:-64450191 | MS.gene70579:CDS |
| GATATGTTGTGTACCGGGTG+AGG | 0.521531 | 3.1:-64449235 | MS.gene70579:CDS |
| GAGCGTGCTGGACGGAAGCT+TGG | 0.530059 | 3.1:-64449098 | MS.gene70579:CDS |
| CTTACCATAAACAATACCCT+TGG | 0.531543 | 3.1:+64449181 | None:intergenic |
| CCTGTGCTTGTGGACTGGGT+TGG | 0.541785 | 3.1:+64448861 | None:intergenic |
| TAGGAAGAGGCCAGTTTCCA+AGG | 0.541808 | 3.1:-64449198 | MS.gene70579:CDS |
| GCGAGCCTTGTCAGGACGAG+TGG | 0.547527 | 3.1:+64450077 | None:intergenic |
| GAAATGACCCAAGAATCAAC+TGG | 0.550461 | 3.1:-64448888 | MS.gene70579:CDS |
| TTATGGTAAGCCCACCAACC+AGG | 0.550892 | 3.1:-64449168 | MS.gene70579:CDS |
| TGAGGGTACGCAGAGGTGGT+AGG | 0.551486 | 3.1:-64449217 | MS.gene70579:CDS |
| ACTTGAGTTGGGTAACTCCC+TGG | 0.551881 | 3.1:+64449150 | None:intergenic |
| TCCGTCGCTGAAGAGCGTGC+TGG | 0.554588 | 3.1:-64449110 | MS.gene70579:CDS |
| AACAGAGGTTTGAGTGGCAA+GGG | 0.555360 | 3.1:-64448805 | MS.gene70579:CDS |
| TAGGGTTCTCAATTCCTACT+GGG | 0.560974 | 3.1:-64449069 | MS.gene70579:CDS |
| CAATTCCTACTGGGTCAATG+AGG | 0.563819 | 3.1:-64449060 | MS.gene70579:intron |
| CACCTCTGCGTACCCTCACC+CGG | 0.571516 | 3.1:+64449222 | None:intergenic |
| TCAGGGATATGTTGTGTACC+GGG | 0.573183 | 3.1:-64449240 | MS.gene70579:intron |
| TTACCCAACTCAAGTTTCAA+AGG | 0.573525 | 3.1:-64449142 | MS.gene70579:CDS |
| TCCAGCACGCTCTTCAGCGA+CGG | 0.585150 | 3.1:+64449109 | None:intergenic |
| AAACAGAGGTTTGAGTGGCA+AGG | 0.585660 | 3.1:-64448806 | MS.gene70579:CDS |
| TTCTCTTCCAGTTTGCCCTG+CGG | 0.587901 | 3.1:+64448755 | None:intergenic |
| TCGCTGAAGAGCGTGCTGGA+CGG | 0.595062 | 3.1:-64449106 | MS.gene70579:CDS |
| CATGCAACGTGTGAGGTGCT+GGG | 0.596458 | 3.1:-64450139 | MS.gene70579:CDS |
| TCAAGTTTCAAAGGAGCAAG+AGG | 0.596680 | 3.1:-64449133 | MS.gene70579:CDS |
| CACAAGCACAGGGAACTTCG+TGG | 0.600876 | 3.1:-64448850 | MS.gene70579:CDS |
| CAGACCCACTCGTCCTGACA+AGG | 0.605906 | 3.1:-64450082 | MS.gene70579:CDS |
| TATGGTAAGCCCACCAACCA+GGG | 0.605988 | 3.1:-64449167 | MS.gene70579:CDS |
| CGGGTGAGGGTACGCAGAGG+TGG | 0.609715 | 3.1:-64449221 | MS.gene70579:CDS |
| ATATGTTGTGTACCGGGTGA+GGG | 0.614513 | 3.1:-64449234 | MS.gene70579:CDS |
| TGCAGTAAAATCAACGGTAA+CGG | 0.618711 | 3.1:+64448713 | None:intergenic |
| CAAAGCCCGTCCATCCCGCA+GGG | 0.619537 | 3.1:-64448770 | MS.gene70579:CDS |
| GAGTTGGGTAACTCCCTGGT+TGG | 0.627619 | 3.1:+64449154 | None:intergenic |
| AGGAAGAGGCCAGTTTCCAA+GGG | 0.629174 | 3.1:-64449197 | MS.gene70579:CDS |
| GCTTAGCCTTGTAACCCAAA+CGG | 0.629228 | 3.1:+64450055 | None:intergenic |
| CAACCCAGTCCACAAGCACA+GGG | 0.632139 | 3.1:-64448860 | MS.gene70579:CDS |
| AAAGAAAACAGAGGTTTGAG+TGG | 0.633735 | 3.1:-64448811 | MS.gene70579:CDS |
| ACGGTAACGGCGGAGAGACA+GGG | 0.637745 | 3.1:+64448726 | None:intergenic |
| CGAGCCTTGTCAGGACGAGT+GGG | 0.641692 | 3.1:+64450078 | None:intergenic |
| ACAAACCTCATTGACCCAGT+AGG | 0.645250 | 3.1:+64449055 | None:intergenic |
| TCTGCTGGAAAAGAAAACAG+AGG | 0.661682 | 3.1:-64448820 | MS.gene70579:CDS |
| AGTAAAATCAACGGTAACGG+CGG | 0.665793 | 3.1:+64448716 | None:intergenic |
| TACCGGGTGAGGGTACGCAG+AGG | 0.674254 | 3.1:-64449224 | MS.gene70579:CDS |
| TGCGATTCATGCAACGTGTG+AGG | 0.718067 | 3.1:-64450146 | MS.gene70579:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAGTCATTTTTTTAAAA+TGG | - | chr3.1:64449206-64449225 | MS.gene70579:CDS | 10.0% |
| !!! | ATAAGTCATTTTTTTAAAAT+GGG | - | chr3.1:64449207-64449226 | MS.gene70579:CDS | 10.0% |
| !! | AAATTTCATATTCATATAGA+AGG | - | chr3.1:64449382-64449401 | MS.gene70579:intron | 15.0% |
| !!! | GTTTGTATTTTTATTTTTAC+TGG | - | chr3.1:64449557-64449576 | MS.gene70579:intron | 15.0% |
| !! | ATCAGACATTAACAAAAATT+TGG | + | chr3.1:64449487-64449506 | None:intergenic | 20.0% |
| !! | TACTAAGAATTAATCACTTA+GGG | - | chr3.1:64449100-64449119 | MS.gene70579:CDS | 20.0% |
| !! | TTACTAAGAATTAATCACTT+AGG | - | chr3.1:64449099-64449118 | MS.gene70579:CDS | 20.0% |
| !!! | TATTGTTGTTATTTGTGAAT+AGG | - | chr3.1:64448802-64448821 | MS.gene70579:CDS | 20.0% |
| !!! | TTTTTAAAATGGGTTTCAAA+TGG | - | chr3.1:64449217-64449236 | MS.gene70579:CDS | 20.0% |
| !! | ACAAAAAATTGATAGTCTCT+AGG | + | chr3.1:64449451-64449470 | None:intergenic | 25.0% |
| !!! | GTAATTGACAAATTTTAGCA+AGG | + | chr3.1:64449672-64449691 | None:intergenic | 25.0% |
| !!! | TAGAGACTATCAATTTTTTG+TGG | - | chr3.1:64449450-64449469 | MS.gene70579:intron | 25.0% |
| AATGACCTCGAAATATTTGA+AGG | + | chr3.1:64450085-64450104 | None:intergenic | 30.0% | |
| ATCATACAGAAACAAAAGCA+TGG | + | chr3.1:64448757-64448776 | None:intergenic | 30.0% | |
| CATGTTTACAAAATGAAGCA+AGG | + | chr3.1:64449733-64449752 | None:intergenic | 30.0% | |
| GAACTAGTTGAAGTTCAATT+TGG | - | chr3.1:64449999-64450018 | MS.gene70579:intron | 30.0% | |
| GTAATTGTCACATCATTTCA+GGG | - | chr3.1:64449764-64449783 | MS.gene70579:intron | 30.0% | |
| GTAGCACAAAACAAAACAAT+GGG | + | chr3.1:64450053-64450072 | None:intergenic | 30.0% | |
| TAGCACAAAACAAAACAATG+GGG | + | chr3.1:64450052-64450071 | None:intergenic | 30.0% | |
| TGTAATTGTCACATCATTTC+AGG | - | chr3.1:64449763-64449782 | MS.gene70579:intron | 30.0% | |
| TGTAGCACAAAACAAAACAA+TGG | + | chr3.1:64450054-64450073 | None:intergenic | 30.0% | |
| TTCTACCTTCAAATATTTCG+AGG | - | chr3.1:64450077-64450096 | MS.gene70579:CDS | 30.0% | |
| ! | CAAATATTTCGAGGTCATTT+TGG | - | chr3.1:64450086-64450105 | MS.gene70579:CDS | 30.0% |
| !! | ATTTGTTCTTGTTGATTCTC+TGG | - | chr3.1:64449028-64449047 | MS.gene70579:intron | 30.0% |
| !! | GCAAATCACAAATTTTAGCA+AGG | + | chr3.1:64449611-64449630 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGTTTTGTGCTAC+AGG | - | chr3.1:64450053-64450072 | MS.gene70579:CDS | 30.0% |
| AAAGAAAACAGAGGTTTGAG+TGG | - | chr3.1:64450210-64450229 | MS.gene70579:intron | 35.0% | |
| ACAAAACAAAACAATGGGGT+TGG | + | chr3.1:64450048-64450067 | None:intergenic | 35.0% | |
| ATGGAGAATTGAAGAGTAGA+TGG | + | chr3.1:64448738-64448757 | None:intergenic | 35.0% | |
| ATGGTTTACTAGTTAACACC+TGG | - | chr3.1:64449287-64449306 | MS.gene70579:intron | 35.0% | |
| CTTACCATAAACAATACCCT+TGG | + | chr3.1:64449843-64449862 | None:intergenic | 35.0% | |
| TAAACAATACCCTTGGAAAC+TGG | + | chr3.1:64449836-64449855 | None:intergenic | 35.0% | |
| TAAACCATGAACAGCAGAAT+AGG | + | chr3.1:64449275-64449294 | None:intergenic | 35.0% | |
| TAGCTCAGAAACATACTTGT+AGG | + | chr3.1:64448830-64448849 | None:intergenic | 35.0% | |
| TGGTTTACTAGTTAACACCT+GGG | - | chr3.1:64449288-64449307 | MS.gene70579:intron | 35.0% | |
| TTACCCAACTCAAGTTTCAA+AGG | - | chr3.1:64449879-64449898 | MS.gene70579:intron | 35.0% | |
| ! | ACAAGTATGTTTCTGAGCTA+TGG | - | chr3.1:64448830-64448849 | MS.gene70579:CDS | 35.0% |
| !! | GTTTCCAAGGGTATTGTTTA+TGG | - | chr3.1:64449836-64449855 | MS.gene70579:intron | 35.0% |
| GAAATGACCCAAGAATCAAC+TGG | - | chr3.1:64450133-64450152 | MS.gene70579:CDS | 40.0% | |
| GGGGCAGAAGTTACAATAAT+TGG | - | chr3.1:64449312-64449331 | MS.gene70579:intron | 40.0% | |
| TAGGGTTCTCAATTCCTACT+GGG | - | chr3.1:64449952-64449971 | MS.gene70579:intron | 40.0% | |
| TCAAGTTTCAAAGGAGCAAG+AGG | - | chr3.1:64449888-64449907 | MS.gene70579:intron | 40.0% | |
| TCAATTTGGTTGTGATGTGC+TGG | - | chr3.1:64450013-64450032 | MS.gene70579:intron | 40.0% | |
| TCATCCTATTCTGCTGTTCA+TGG | - | chr3.1:64449268-64449287 | MS.gene70579:intron | 40.0% | |
| TCTGCTGGAAAAGAAAACAG+AGG | - | chr3.1:64450201-64450220 | MS.gene70579:intron | 40.0% | |
| TTACTAGTTAACACCTGGGT+GGG | - | chr3.1:64449292-64449311 | MS.gene70579:intron | 40.0% | |
| TTAGGGTTCTCAATTCCTAC+TGG | - | chr3.1:64449951-64449970 | MS.gene70579:intron | 40.0% | |
| TTCAGGGATATGTTGTGTAC+CGG | - | chr3.1:64449780-64449799 | MS.gene70579:intron | 40.0% | |
| TTTACTAGTTAACACCTGGG+TGG | - | chr3.1:64449291-64449310 | MS.gene70579:intron | 40.0% | |
| !! | GCTCCTTTGAAACTTGAGTT+GGG | + | chr3.1:64449885-64449904 | None:intergenic | 40.0% |
| !! | TGCTCCTTTGAAACTTGAGT+TGG | + | chr3.1:64449886-64449905 | None:intergenic | 40.0% |
| AAACAGAGGTTTGAGTGGCA+AGG | - | chr3.1:64450215-64450234 | MS.gene70579:intron | 45.0% | |
| AACAGAGGTTTGAGTGGCAA+GGG | - | chr3.1:64450216-64450235 | MS.gene70579:intron | 45.0% | |
| ACAAACCTCATTGACCCAGT+AGG | + | chr3.1:64449969-64449988 | None:intergenic | 45.0% | |
| ATAGTCTCTAGGCCTGTACA+TGG | + | chr3.1:64449440-64449459 | None:intergenic | 45.0% | |
| ATATGTTGTGTACCGGGTGA+GGG | - | chr3.1:64449787-64449806 | MS.gene70579:intron | 45.0% | |
| CAATTCCTACTGGGTCAATG+AGG | - | chr3.1:64449961-64449980 | MS.gene70579:intron | 45.0% | |
| CATTGCTCAAGACCATGTAC+AGG | - | chr3.1:64449425-64449444 | MS.gene70579:intron | 45.0% | |
| GGTCTTGAGCAATGGTTCAA+AGG | + | chr3.1:64449419-64449438 | None:intergenic | 45.0% | |
| TACTAGTTAACACCTGGGTG+GGG | - | chr3.1:64449293-64449312 | MS.gene70579:intron | 45.0% | |
| TCAGGGATATGTTGTGTACC+GGG | - | chr3.1:64449781-64449800 | MS.gene70579:intron | 45.0% | |
| ! | CTGTACATGGTCTTGAGCAA+TGG | + | chr3.1:64449427-64449446 | None:intergenic | 45.0% |
| ! | TGGTGAGCCAGTTGATTCTT+GGG | + | chr3.1:64450143-64450162 | None:intergenic | 45.0% |
| ! | TTGGTGAGCCAGTTGATTCT+TGG | + | chr3.1:64450144-64450163 | None:intergenic | 45.0% |
| ! | TTTGGGTTACAAGGCTAAGC+AGG | - | chr3.1:64448969-64448988 | MS.gene70579:intron | 45.0% |
| !! | GCTTAGCCTTGTAACCCAAA+CGG | + | chr3.1:64448969-64448988 | None:intergenic | 45.0% |
| AGGAAGAGGCCAGTTTCCAA+GGG | - | chr3.1:64449824-64449843 | MS.gene70579:intron | 50.0% | |
| GATATGTTGTGTACCGGGTG+AGG | - | chr3.1:64449786-64449805 | MS.gene70579:intron | 50.0% | |
| TAGGAAGAGGCCAGTTTCCA+AGG | - | chr3.1:64449823-64449842 | MS.gene70579:intron | 50.0% | |
| TATGGTAAGCCCACCAACCA+GGG | - | chr3.1:64449854-64449873 | MS.gene70579:intron | 50.0% | |
| TCTGGTGAGACGAACGATAG+AGG | + | chr3.1:64448923-64448942 | None:intergenic | 50.0% | |
| TGCGATTCATGCAACGTGTG+AGG | - | chr3.1:64448875-64448894 | MS.gene70579:CDS | 50.0% | |
| TTATGGTAAGCCCACCAACC+AGG | - | chr3.1:64449853-64449872 | MS.gene70579:intron | 50.0% | |
| TTCTCTTCCAGTTTGCCCTG+CGG | + | chr3.1:64450269-64450288 | None:intergenic | 50.0% | |
| ! | ACGGAAGCTTGGTGGTCTTA+GGG | - | chr3.1:64449934-64449953 | MS.gene70579:intron | 50.0% |
| ! | ATGGACGGGCTTTGTGGTAA+CGG | + | chr3.1:64450245-64450264 | None:intergenic | 50.0% |
| ! | TTTGGTTGTGATGTGCTGGC+TGG | - | chr3.1:64450017-64450036 | MS.gene70579:intron | 50.0% |
| !! | ACTTGAGTTGGGTAACTCCC+TGG | + | chr3.1:64449874-64449893 | None:intergenic | 50.0% |
| AGTTCCCTGTGCTTGTGGAC+TGG | + | chr3.1:64450168-64450187 | None:intergenic | 55.0% | |
| CAACCCAGTCCACAAGCACA+GGG | - | chr3.1:64450161-64450180 | MS.gene70579:CDS | 55.0% | |
| CACAAGCACAGGGAACTTCG+TGG | - | chr3.1:64450171-64450190 | MS.gene70579:CDS | 55.0% | |
| CACGAAGTTCCCTGTGCTTG+TGG | + | chr3.1:64450173-64450192 | None:intergenic | 55.0% | |
| CTTCGTGGTCTCACTTCTGC+TGG | - | chr3.1:64450186-64450205 | MS.gene70579:CDS | 55.0% | |
| GAGTTGGGTAACTCCCTGGT+TGG | + | chr3.1:64449870-64449889 | None:intergenic | 55.0% | |
| GTTCCCTGTGCTTGTGGACT+GGG | + | chr3.1:64450167-64450186 | None:intergenic | 55.0% | |
| TACGCAGAGGTGGTAGGAAG+AGG | - | chr3.1:64449810-64449829 | MS.gene70579:intron | 55.0% | |
| TCATGCAACGTGTGAGGTGC+TGG | - | chr3.1:64448881-64448900 | MS.gene70579:CDS | 55.0% | |
| TCTCTTCCAGTTTGCCCTGC+GGG | + | chr3.1:64450268-64450287 | None:intergenic | 55.0% | |
| TGGGTAACTCCCTGGTTGGT+GGG | + | chr3.1:64449866-64449885 | None:intergenic | 55.0% | |
| TTGGGTAACTCCCTGGTTGG+TGG | + | chr3.1:64449867-64449886 | None:intergenic | 55.0% | |
| TTGTAACTTCTGCCCCACCC+AGG | + | chr3.1:64449308-64449327 | None:intergenic | 55.0% | |
| ! | CATGCAACGTGTGAGGTGCT+GGG | - | chr3.1:64448882-64448901 | MS.gene70579:CDS | 55.0% |
| ! | GACGGAAGCTTGGTGGTCTT+AGG | - | chr3.1:64449933-64449952 | MS.gene70579:intron | 55.0% |
| AGTTTGCCCTGCGGGATGGA+CGG | + | chr3.1:64450260-64450279 | None:intergenic | 60.0% | |
| CAGACCCACTCGTCCTGACA+AGG | - | chr3.1:64448939-64448958 | MS.gene70579:CDS | 60.0% | |
| CCAACCCAGTCCACAAGCAC+AGG | - | chr3.1:64450160-64450179 | MS.gene70579:CDS | 60.0% | |
| CCTGACAAGGCTCGCCGTTT+GGG | - | chr3.1:64448952-64448971 | MS.gene70579:intron | 60.0% | |
| CTTGTCAGGACGAGTGGGTC+TGG | + | chr3.1:64448941-64448960 | None:intergenic | 60.0% | |
| TCCAGCACGCTCTTCAGCGA+CGG | + | chr3.1:64449915-64449934 | None:intergenic | 60.0% | |
| TCCTGACAAGGCTCGCCGTT+TGG | - | chr3.1:64448951-64448970 | MS.gene70579:intron | 60.0% | |
| TTCCAGTTTGCCCTGCGGGA+TGG | + | chr3.1:64450264-64450283 | None:intergenic | 60.0% | |
| ! | AACGGTAACGGCGGAGAGAC+AGG | + | chr3.1:64450299-64450318 | None:intergenic | 60.0% |
| ! | ACGGTAACGGCGGAGAGACA+GGG | + | chr3.1:64450298-64450317 | None:intergenic | 60.0% |
| ! | CGAGCCTTGTCAGGACGAGT+GGG | + | chr3.1:64448946-64448965 | None:intergenic | 60.0% |
| ! | GGCTCGCCGTTTGGGTTACA+AGG | - | chr3.1:64448960-64448979 | MS.gene70579:intron | 60.0% |
| ! | TCGCTGAAGAGCGTGCTGGA+CGG | - | chr3.1:64449915-64449934 | MS.gene70579:intron | 60.0% |
| ! | TGAGGGTACGCAGAGGTGGT+AGG | - | chr3.1:64449804-64449823 | MS.gene70579:intron | 60.0% |
| !! | CCTGTGCTTGTGGACTGGGT+TGG | + | chr3.1:64450163-64450182 | None:intergenic | 60.0% |
| ACAAAGCCCGTCCATCCCGC+AGG | - | chr3.1:64450250-64450269 | MS.gene70579:intron | 65.0% | |
| CAAAGCCCGTCCATCCCGCA+GGG | - | chr3.1:64450251-64450270 | MS.gene70579:intron | 65.0% | |
| CACCTCTGCGTACCCTCACC+CGG | + | chr3.1:64449802-64449821 | None:intergenic | 65.0% | |
| CGTGCTGGACGGAAGCTTGG+TGG | - | chr3.1:64449926-64449945 | MS.gene70579:intron | 65.0% | |
| GAGCGTGCTGGACGGAAGCT+TGG | - | chr3.1:64449923-64449942 | MS.gene70579:intron | 65.0% | |
| GTCCATCCCGCAGGGCAAAC+TGG | - | chr3.1:64450259-64450278 | MS.gene70579:intron | 65.0% | |
| GTTTGCCCTGCGGGATGGAC+GGG | + | chr3.1:64450259-64450278 | None:intergenic | 65.0% | |
| ! | CCCAAACGGCGAGCCTTGTC+AGG | + | chr3.1:64448955-64448974 | None:intergenic | 65.0% |
| ! | GCGAGCCTTGTCAGGACGAG+TGG | + | chr3.1:64448947-64448966 | None:intergenic | 65.0% |
| ! | TACCGGGTGAGGGTACGCAG+AGG | - | chr3.1:64449797-64449816 | MS.gene70579:intron | 65.0% |
| ! | TCCGTCGCTGAAGAGCGTGC+TGG | - | chr3.1:64449911-64449930 | MS.gene70579:intron | 65.0% |
| ! | TGCGGGATGGACGGGCTTTG+TGG | + | chr3.1:64450251-64450270 | None:intergenic | 65.0% |
| ! | CGGGTGAGGGTACGCAGAGG+TGG | - | chr3.1:64449800-64449819 | MS.gene70579:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64448723 | 64450320 | 64448723 | ID=MS.gene70579 |
| chr3.1 | mRNA | 64448723 | 64450320 | 64448723 | ID=MS.gene70579.t1;Parent=MS.gene70579 |
| chr3.1 | exon | 64450317 | 64450320 | 64450317 | ID=MS.gene70579.t1.exon1;Parent=MS.gene70579.t1 |
| chr3.1 | CDS | 64450317 | 64450320 | 64450317 | ID=cds.MS.gene70579.t1;Parent=MS.gene70579.t1 |
| chr3.1 | exon | 64450053 | 64450219 | 64450053 | ID=MS.gene70579.t1.exon2;Parent=MS.gene70579.t1 |
| chr3.1 | CDS | 64450053 | 64450219 | 64450053 | ID=cds.MS.gene70579.t1;Parent=MS.gene70579.t1 |
| chr3.1 | exon | 64449061 | 64449258 | 64449061 | ID=MS.gene70579.t1.exon3;Parent=MS.gene70579.t1 |
| chr3.1 | CDS | 64449061 | 64449258 | 64449061 | ID=cds.MS.gene70579.t1;Parent=MS.gene70579.t1 |
| chr3.1 | exon | 64448723 | 64448968 | 64448723 | ID=MS.gene70579.t1.exon4;Parent=MS.gene70579.t1 |
| chr3.1 | CDS | 64448723 | 64448968 | 64448723 | ID=cds.MS.gene70579.t1;Parent=MS.gene70579.t1 |
| Gene Sequence |
| Protein sequence |
