Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074400.t1 | XP_013461067.1 | 100 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074400.t1 | O82528 | 88.2 | 204 | 24 | 0 | 1 | 204 | 1 | 204 | 2.2e-100 | 366.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074400.t1 | I3T9M3 | 100.0 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 3.1e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene074400 | 0.884718 | 1.51E-71 | -1.69E-46 |
| MS.gene049361 | MS.gene074400 | 0.803745 | 3.01E-49 | -1.69E-46 |
| MS.gene049376 | MS.gene074400 | 0.83097 | 2.18E-55 | -1.69E-46 |
| MS.gene049387 | MS.gene074400 | 0.84368 | 1.21E-58 | -1.69E-46 |
| MS.gene050134 | MS.gene074400 | 0.868765 | 5.12E-66 | -1.69E-46 |
| MS.gene051925 | MS.gene074400 | 0.87415 | 8.46E-68 | -1.69E-46 |
| MS.gene051927 | MS.gene074400 | 0.858933 | 5.86E-63 | -1.69E-46 |
| MS.gene051984 | MS.gene074400 | 0.828024 | 1.13E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene074400 | 0.831356 | 1.75E-55 | -1.69E-46 |
| MS.gene052664 | MS.gene074400 | 0.863717 | 2.04E-64 | -1.69E-46 |
| MS.gene052666 | MS.gene074400 | 0.86496 | 8.35E-65 | -1.69E-46 |
| MS.gene053224 | MS.gene074400 | 0.842405 | 2.64E-58 | -1.69E-46 |
| MS.gene054624 | MS.gene074400 | 0.839335 | 1.69E-57 | -1.69E-46 |
| MS.gene057272 | MS.gene074400 | 0.84669 | 1.85E-59 | -1.69E-46 |
| MS.gene057321 | MS.gene074400 | 0.863336 | 2.68E-64 | -1.69E-46 |
| MS.gene057605 | MS.gene074400 | 0.800969 | 1.12E-48 | -1.69E-46 |
| MS.gene057641 | MS.gene074400 | 0.829473 | 5.05E-55 | -1.69E-46 |
| MS.gene057643 | MS.gene074400 | 0.85234 | 4.92E-61 | -1.69E-46 |
| MS.gene059340 | MS.gene074400 | 0.897674 | 1.12E-76 | -1.69E-46 |
| MS.gene060483 | MS.gene074400 | 0.877101 | 8.23E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074400 | MS.gene01057 | PPI |
| MS.gene074400 | MS.gene022249 | PPI |
| MS.gene074400 | MS.gene067362 | PPI |
| MS.gene074400 | MS.gene61498 | PPI |
| MS.gene074400 | MS.gene59047 | PPI |
| MS.gene074400 | MS.gene01456 | PPI |
| MS.gene036800 | MS.gene074400 | PPI |
| MS.gene074400 | MS.gene70579 | PPI |
| MS.gene074400 | MS.gene038837 | PPI |
| MS.gene074400 | MS.gene002484 | PPI |
| MS.gene074400 | MS.gene036800 | PPI |
| MS.gene074400 | MS.gene25903 | PPI |
| MS.gene59047 | MS.gene074400 | PPI |
| MS.gene074400 | MS.gene62426 | PPI |
| MS.gene074400 | MS.gene047337 | PPI |
| MS.gene074400 | MS.gene045843 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074400.t1 | MTR_3g078653 | 100.000 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 8.57e-150 | 414 |
| MS.gene074400.t1 | MTR_2g014220 | 99.510 | 204 | 1 | 0 | 1 | 204 | 49 | 252 | 2.38e-149 | 415 |
| MS.gene074400.t1 | MTR_7g026915 | 94.915 | 59 | 3 | 0 | 1 | 59 | 1 | 59 | 3.81e-33 | 125 |
| MS.gene074400.t1 | MTR_7g026915 | 87.500 | 64 | 8 | 0 | 1 | 64 | 1 | 64 | 1.52e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074400.t1 | AT4G16720 | 88.235 | 204 | 24 | 0 | 1 | 204 | 1 | 204 | 8.64e-122 | 343 |
| MS.gene074400.t1 | AT4G17390 | 87.745 | 204 | 25 | 0 | 1 | 204 | 1 | 204 | 1.80e-121 | 342 |
Find 81 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATATTTCGAGGTCATTT+TGG | 0.206004 | 3.4:-75202927 | MS.gene074400:CDS |
| GTTTCCAAGGGTATTGTTTA+TGG | 0.211521 | 3.4:-75203177 | MS.gene074400:CDS |
| GACGGAAGCTTGGTGGTCTT+AGG | 0.284899 | 3.4:-75203080 | MS.gene074400:CDS |
| TCCTGACAAGGCTCGCCGTT+TGG | 0.286229 | 3.4:-75204068 | MS.gene074400:CDS |
| TTGGTGAGCCAGTTGATTCT+TGG | 0.307622 | 3.4:+75202872 | None:intergenic |
| CCTGACAAGGCTCGCCGTTT+GGG | 0.317524 | 3.4:-75204067 | MS.gene074400:CDS |
| AGTTCCCTGTGCTTGTGGAC+TGG | 0.331698 | 3.4:+75202848 | None:intergenic |
| GTTCCCTGTGCTTGTGGACT+GGG | 0.349720 | 3.4:+75202849 | None:intergenic |
| TTAGGGTTCTCAATTCCTAC+TGG | 0.365103 | 3.4:-75203062 | MS.gene074400:CDS |
| TGGTGAGCCAGTTGATTCTT+GGG | 0.374689 | 3.4:+75202873 | None:intergenic |
| TAAACAATACCCTTGGAAAC+TGG | 0.377401 | 3.4:+75203180 | None:intergenic |
| GTCCATCCCGCAGGGCAAAC+TGG | 0.385467 | 3.4:-75202754 | MS.gene074400:CDS |
| TGCGGGATGGACGGGCTTTG+TGG | 0.407354 | 3.4:+75202765 | None:intergenic |
| TCATGCAACGTGTGAGGTGC+TGG | 0.410863 | 3.4:-75204138 | MS.gene074400:CDS |
| TGCTCCTTTGAAACTTGAGT+TGG | 0.414015 | 3.4:+75203130 | None:intergenic |
| AACGGTAACGGCGGAGAGAC+AGG | 0.416120 | 3.4:+75202717 | None:intergenic |
| GTTTGCCCTGCGGGATGGAC+GGG | 0.417367 | 3.4:+75202757 | None:intergenic |
| TAGCTCAGAAACATACTTGT+AGG | 0.420670 | 3.4:+75204192 | None:intergenic |
| TGGGTAACTCCCTGGTTGGT+GGG | 0.428376 | 3.4:+75203150 | None:intergenic |
| CCCAAACGGCGAGCCTTGTC+AGG | 0.428600 | 3.4:+75204067 | None:intergenic |
| GGCTCGCCGTTTGGGTTACA+AGG | 0.429123 | 3.4:-75204059 | MS.gene074400:CDS |
| AGTTTGCCCTGCGGGATGGA+CGG | 0.430262 | 3.4:+75202756 | None:intergenic |
| TTCAGGGATATGTTGTGTAC+CGG | 0.437893 | 3.4:-75203233 | MS.gene074400:intron |
| AATGACCTCGAAATATTTGA+AGG | 0.445755 | 3.4:+75202931 | None:intergenic |
| CTTCGTGGTCTCACTTCTGC+TGG | 0.448020 | 3.4:-75202827 | MS.gene074400:CDS |
| CTTGTCAGGACGAGTGGGTC+TGG | 0.448800 | 3.4:+75204081 | None:intergenic |
| ACGGAAGCTTGGTGGTCTTA+GGG | 0.449544 | 3.4:-75203079 | MS.gene074400:CDS |
| CACGAAGTTCCCTGTGCTTG+TGG | 0.463265 | 3.4:+75202843 | None:intergenic |
| ATGGACGGGCTTTGTGGTAA+CGG | 0.472327 | 3.4:+75202771 | None:intergenic |
| TTGGGTAACTCCCTGGTTGG+TGG | 0.476932 | 3.4:+75203149 | None:intergenic |
| GCTCCTTTGAAACTTGAGTT+GGG | 0.480540 | 3.4:+75203131 | None:intergenic |
| TCTGGTGAGACGAACGATAG+AGG | 0.481896 | 3.4:+75204099 | None:intergenic |
| TTCCAGTTTGCCCTGCGGGA+TGG | 0.487694 | 3.4:+75202752 | None:intergenic |
| TTCTACCTTCAAATATTTCG+AGG | 0.494616 | 3.4:-75202936 | MS.gene074400:CDS |
| CCAACCCAGTCCACAAGCAC+AGG | 0.501162 | 3.4:-75202853 | MS.gene074400:CDS |
| CGTGCTGGACGGAAGCTTGG+TGG | 0.501934 | 3.4:-75203087 | MS.gene074400:CDS |
| TACGCAGAGGTGGTAGGAAG+AGG | 0.502186 | 3.4:-75203203 | MS.gene074400:CDS |
| TTTGGGTTACAAGGCTAAGC+AGG | 0.502645 | 3.4:-75204050 | MS.gene074400:intron |
| ACAAAGCCCGTCCATCCCGC+AGG | 0.505243 | 3.4:-75202763 | MS.gene074400:CDS |
| ACAAGTATGTTTCTGAGCTA+TGG | 0.512701 | 3.4:-75204189 | MS.gene074400:CDS |
| GATATGTTGTGTACCGGGTG+AGG | 0.521531 | 3.4:-75203227 | MS.gene074400:CDS |
| GAGCGTGCTGGACGGAAGCT+TGG | 0.530059 | 3.4:-75203090 | MS.gene074400:CDS |
| CTTACCATAAACAATACCCT+TGG | 0.531543 | 3.4:+75203173 | None:intergenic |
| CCTGTGCTTGTGGACTGGGT+TGG | 0.541785 | 3.4:+75202853 | None:intergenic |
| TAGGAAGAGGCCAGTTTCCA+AGG | 0.541808 | 3.4:-75203190 | MS.gene074400:CDS |
| GCGAGCCTTGTCAGGACGAG+TGG | 0.547527 | 3.4:+75204075 | None:intergenic |
| GAAATGACCCAAGAATCAAC+TGG | 0.550461 | 3.4:-75202880 | MS.gene074400:CDS |
| TTATGGTAAGCCCACCAACC+AGG | 0.550892 | 3.4:-75203160 | MS.gene074400:CDS |
| TGAGGGTACGCAGAGGTGGT+AGG | 0.551486 | 3.4:-75203209 | MS.gene074400:CDS |
| ACTTGAGTTGGGTAACTCCC+TGG | 0.551881 | 3.4:+75203142 | None:intergenic |
| TCCGTCGCTGAAGAGCGTGC+TGG | 0.554588 | 3.4:-75203102 | MS.gene074400:CDS |
| AACAGAGGTTTGAGTGGCAA+GGG | 0.555360 | 3.4:-75202797 | MS.gene074400:CDS |
| TAGGGTTCTCAATTCCTACT+GGG | 0.560974 | 3.4:-75203061 | MS.gene074400:CDS |
| CAATTCCTACTGGGTCAATG+AGG | 0.563819 | 3.4:-75203052 | MS.gene074400:intron |
| CACCTCTGCGTACCCTCACC+CGG | 0.571516 | 3.4:+75203214 | None:intergenic |
| TCAGGGATATGTTGTGTACC+GGG | 0.573183 | 3.4:-75203232 | MS.gene074400:intron |
| TTACCCAACTCAAGTTTCAA+AGG | 0.573525 | 3.4:-75203134 | MS.gene074400:CDS |
| TCCAGCACGCTCTTCAGCGA+CGG | 0.585150 | 3.4:+75203101 | None:intergenic |
| AAACAGAGGTTTGAGTGGCA+AGG | 0.585660 | 3.4:-75202798 | MS.gene074400:CDS |
| TCGCTGAAGAGCGTGCTGGA+CGG | 0.595062 | 3.4:-75203098 | MS.gene074400:CDS |
| CATGCAACGTGTGAGGTGCT+GGG | 0.596458 | 3.4:-75204137 | MS.gene074400:CDS |
| TCAAGTTTCAAAGGAGCAAG+AGG | 0.596680 | 3.4:-75203125 | MS.gene074400:CDS |
| CACAAGCACAGGGAACTTCG+TGG | 0.600876 | 3.4:-75202842 | MS.gene074400:CDS |
| CAGACCCACTCGTCCTGACA+AGG | 0.605906 | 3.4:-75204080 | MS.gene074400:CDS |
| TATGGTAAGCCCACCAACCA+GGG | 0.605988 | 3.4:-75203159 | MS.gene074400:CDS |
| CGGGTGAGGGTACGCAGAGG+TGG | 0.609715 | 3.4:-75203213 | MS.gene074400:CDS |
| ATATGTTGTGTACCGGGTGA+GGG | 0.614513 | 3.4:-75203226 | MS.gene074400:CDS |
| TGCAGTAAAATCAACGGTAA+CGG | 0.618711 | 3.4:+75202705 | None:intergenic |
| CAAAGCCCGTCCATCCCGCA+GGG | 0.619537 | 3.4:-75202762 | MS.gene074400:CDS |
| GAGTTGGGTAACTCCCTGGT+TGG | 0.627619 | 3.4:+75203146 | None:intergenic |
| AGGAAGAGGCCAGTTTCCAA+GGG | 0.629174 | 3.4:-75203189 | MS.gene074400:CDS |
| GCTTAGCCTTGTAACCCAAA+CGG | 0.629228 | 3.4:+75204053 | None:intergenic |
| CAACCCAGTCCACAAGCACA+GGG | 0.632139 | 3.4:-75202852 | MS.gene074400:CDS |
| AAAGAAAACAGAGGTTTGAG+TGG | 0.633735 | 3.4:-75202803 | MS.gene074400:CDS |
| ACGGTAACGGCGGAGAGACA+GGG | 0.637745 | 3.4:+75202718 | None:intergenic |
| CGAGCCTTGTCAGGACGAGT+GGG | 0.641692 | 3.4:+75204076 | None:intergenic |
| ACAAACCTCATTGACCCAGT+AGG | 0.645250 | 3.4:+75203047 | None:intergenic |
| TCTGCTGGAAAAGAAAACAG+AGG | 0.661682 | 3.4:-75202812 | MS.gene074400:CDS |
| AGTAAAATCAACGGTAACGG+CGG | 0.665793 | 3.4:+75202708 | None:intergenic |
| TACCGGGTGAGGGTACGCAG+AGG | 0.674254 | 3.4:-75203216 | MS.gene074400:CDS |
| TGCGATTCATGCAACGTGTG+AGG | 0.718067 | 3.4:-75204144 | MS.gene074400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAGTCATTTTTTTAAAA+TGG | - | chr3.4:75203198-75203217 | MS.gene074400:CDS | 10.0% |
| !!! | ATAAGTCATTTTTTTAAAAT+GGG | - | chr3.4:75203199-75203218 | MS.gene074400:CDS | 10.0% |
| !! | AAATTTCATATTCATATAGA+AGG | - | chr3.4:75203374-75203393 | MS.gene074400:intron | 15.0% |
| !!! | GTTTGTATTTTTATTTTTAC+TGG | - | chr3.4:75203549-75203568 | MS.gene074400:intron | 15.0% |
| !! | ATCAGACATTAACAAAAATT+TGG | + | chr3.4:75203479-75203498 | None:intergenic | 20.0% |
| !! | TACTAAGAATTAATCACTTA+GGG | - | chr3.4:75203092-75203111 | MS.gene074400:CDS | 20.0% |
| !! | TTACTAAGAATTAATCACTT+AGG | - | chr3.4:75203091-75203110 | MS.gene074400:CDS | 20.0% |
| !!! | TATTGTTGTTATTTGTGAAT+AGG | - | chr3.4:75202794-75202813 | MS.gene074400:CDS | 20.0% |
| !!! | TTTTTAAAATGGGTTTCAAA+TGG | - | chr3.4:75203209-75203228 | MS.gene074400:CDS | 20.0% |
| !! | ACAAAAAATTGATAGTCTCT+AGG | + | chr3.4:75203443-75203462 | None:intergenic | 25.0% |
| !!! | GTAATTGACAAATTTTAGCA+AGG | + | chr3.4:75203670-75203689 | None:intergenic | 25.0% |
| !!! | TAGAGACTATCAATTTTTTG+TGG | - | chr3.4:75203442-75203461 | MS.gene074400:intron | 25.0% |
| AATGACCTCGAAATATTTGA+AGG | + | chr3.4:75204083-75204102 | None:intergenic | 30.0% | |
| ATCATACAGAAACAAAAGCA+TGG | + | chr3.4:75202749-75202768 | None:intergenic | 30.0% | |
| CATGTTTACAAAATGAAGCA+AGG | + | chr3.4:75203731-75203750 | None:intergenic | 30.0% | |
| GAACTAGTTGAAGTTCAATT+TGG | - | chr3.4:75203997-75204016 | MS.gene074400:intron | 30.0% | |
| GTAATTGTCACATCATTTCA+GGG | - | chr3.4:75203762-75203781 | MS.gene074400:intron | 30.0% | |
| GTAGCACAAAACAAAACAAT+GGG | + | chr3.4:75204051-75204070 | None:intergenic | 30.0% | |
| TAGCACAAAACAAAACAATG+GGG | + | chr3.4:75204050-75204069 | None:intergenic | 30.0% | |
| TGTAATTGTCACATCATTTC+AGG | - | chr3.4:75203761-75203780 | MS.gene074400:intron | 30.0% | |
| TGTAGCACAAAACAAAACAA+TGG | + | chr3.4:75204052-75204071 | None:intergenic | 30.0% | |
| TTCTACCTTCAAATATTTCG+AGG | - | chr3.4:75204075-75204094 | MS.gene074400:CDS | 30.0% | |
| ! | CAAATATTTCGAGGTCATTT+TGG | - | chr3.4:75204084-75204103 | MS.gene074400:CDS | 30.0% |
| !! | ATTTGTTCTTGTTGATTCTC+TGG | - | chr3.4:75203020-75203039 | MS.gene074400:intron | 30.0% |
| !! | GCAAATCACAAATTTTAGCA+AGG | + | chr3.4:75203603-75203622 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGTTTTGTGCTAC+AGG | - | chr3.4:75204051-75204070 | MS.gene074400:CDS | 30.0% |
| AAAGAAAACAGAGGTTTGAG+TGG | - | chr3.4:75204208-75204227 | MS.gene074400:intron | 35.0% | |
| ACAAAACAAAACAATGGGGT+TGG | + | chr3.4:75204046-75204065 | None:intergenic | 35.0% | |
| ATGGTTTACTAGTTAACACC+TGG | - | chr3.4:75203279-75203298 | MS.gene074400:intron | 35.0% | |
| CTTACCATAAACAATACCCT+TGG | + | chr3.4:75203841-75203860 | None:intergenic | 35.0% | |
| TAAACAATACCCTTGGAAAC+TGG | + | chr3.4:75203834-75203853 | None:intergenic | 35.0% | |
| TAAACCATGAACAGCAGAAT+AGG | + | chr3.4:75203267-75203286 | None:intergenic | 35.0% | |
| TAGCTCAGAAACATACTTGT+AGG | + | chr3.4:75202822-75202841 | None:intergenic | 35.0% | |
| TGGTTTACTAGTTAACACCT+GGG | - | chr3.4:75203280-75203299 | MS.gene074400:intron | 35.0% | |
| TTACCCAACTCAAGTTTCAA+AGG | - | chr3.4:75203877-75203896 | MS.gene074400:intron | 35.0% | |
| ! | ACAAGTATGTTTCTGAGCTA+TGG | - | chr3.4:75202822-75202841 | MS.gene074400:CDS | 35.0% |
| !! | GTTTCCAAGGGTATTGTTTA+TGG | - | chr3.4:75203834-75203853 | MS.gene074400:intron | 35.0% |
| ATGGAGAATCGAAGAGTAGA+TGG | + | chr3.4:75202730-75202749 | None:intergenic | 40.0% | |
| GAAATGACCCAAGAATCAAC+TGG | - | chr3.4:75204131-75204150 | MS.gene074400:CDS | 40.0% | |
| GGGGCAGAAGTTACAATAAT+TGG | - | chr3.4:75203304-75203323 | MS.gene074400:intron | 40.0% | |
| TAGGGTTCTCAATTCCTACT+GGG | - | chr3.4:75203950-75203969 | MS.gene074400:intron | 40.0% | |
| TCAAGTTTCAAAGGAGCAAG+AGG | - | chr3.4:75203886-75203905 | MS.gene074400:intron | 40.0% | |
| TCAATTTGGTTGTGATGTGC+TGG | - | chr3.4:75204011-75204030 | MS.gene074400:intron | 40.0% | |
| TCATCCTATTCTGCTGTTCA+TGG | - | chr3.4:75203260-75203279 | MS.gene074400:intron | 40.0% | |
| TCTGCTGGAAAAGAAAACAG+AGG | - | chr3.4:75204199-75204218 | MS.gene074400:intron | 40.0% | |
| TTACTAGTTAACACCTGGGT+GGG | - | chr3.4:75203284-75203303 | MS.gene074400:intron | 40.0% | |
| TTAGGGTTCTCAATTCCTAC+TGG | - | chr3.4:75203949-75203968 | MS.gene074400:intron | 40.0% | |
| TTCAGGGATATGTTGTGTAC+CGG | - | chr3.4:75203778-75203797 | MS.gene074400:intron | 40.0% | |
| TTTACTAGTTAACACCTGGG+TGG | - | chr3.4:75203283-75203302 | MS.gene074400:intron | 40.0% | |
| !! | GCTCCTTTGAAACTTGAGTT+GGG | + | chr3.4:75203883-75203902 | None:intergenic | 40.0% |
| !! | TGCTCCTTTGAAACTTGAGT+TGG | + | chr3.4:75203884-75203903 | None:intergenic | 40.0% |
| AAACAGAGGTTTGAGTGGCA+AGG | - | chr3.4:75204213-75204232 | MS.gene074400:intron | 45.0% | |
| AACAGAGGTTTGAGTGGCAA+GGG | - | chr3.4:75204214-75204233 | MS.gene074400:intron | 45.0% | |
| ACAAACCTCATTGACCCAGT+AGG | + | chr3.4:75203967-75203986 | None:intergenic | 45.0% | |
| ATAGTCTCTAGGCCTGTACA+TGG | + | chr3.4:75203432-75203451 | None:intergenic | 45.0% | |
| ATATGTTGTGTACCGGGTGA+GGG | - | chr3.4:75203785-75203804 | MS.gene074400:intron | 45.0% | |
| CAATTCCTACTGGGTCAATG+AGG | - | chr3.4:75203959-75203978 | MS.gene074400:intron | 45.0% | |
| CATTGCTCAAGACCATGTAC+AGG | - | chr3.4:75203417-75203436 | MS.gene074400:intron | 45.0% | |
| GGTCTTGAGCAATGGTTCAA+AGG | + | chr3.4:75203411-75203430 | None:intergenic | 45.0% | |
| TACTAGTTAACACCTGGGTG+GGG | - | chr3.4:75203285-75203304 | MS.gene074400:intron | 45.0% | |
| TCAGGGATATGTTGTGTACC+GGG | - | chr3.4:75203779-75203798 | MS.gene074400:intron | 45.0% | |
| ! | CTGTACATGGTCTTGAGCAA+TGG | + | chr3.4:75203419-75203438 | None:intergenic | 45.0% |
| ! | TGGTGAGCCAGTTGATTCTT+GGG | + | chr3.4:75204141-75204160 | None:intergenic | 45.0% |
| ! | TTCTTTTCCAGTTTGCCCTG+CGG | + | chr3.4:75204267-75204286 | None:intergenic | 45.0% |
| ! | TTGGTGAGCCAGTTGATTCT+TGG | + | chr3.4:75204142-75204161 | None:intergenic | 45.0% |
| ! | TTTGGGTTACAAGGCTAAGC+AGG | - | chr3.4:75202961-75202980 | MS.gene074400:intron | 45.0% |
| !! | GCTTAGCCTTGTAACCCAAA+CGG | + | chr3.4:75202961-75202980 | None:intergenic | 45.0% |
| AGGAAGAGGCCAGTTTCCAA+GGG | - | chr3.4:75203822-75203841 | MS.gene074400:intron | 50.0% | |
| GATATGTTGTGTACCGGGTG+AGG | - | chr3.4:75203784-75203803 | MS.gene074400:intron | 50.0% | |
| TAGGAAGAGGCCAGTTTCCA+AGG | - | chr3.4:75203821-75203840 | MS.gene074400:intron | 50.0% | |
| TATGGTAAGCCCACCAACCA+GGG | - | chr3.4:75203852-75203871 | MS.gene074400:intron | 50.0% | |
| TCTGGTGAGACGAACGATAG+AGG | + | chr3.4:75202915-75202934 | None:intergenic | 50.0% | |
| TGCGATTCATGCAACGTGTG+AGG | - | chr3.4:75202867-75202886 | MS.gene074400:CDS | 50.0% | |
| TTATGGTAAGCCCACCAACC+AGG | - | chr3.4:75203851-75203870 | MS.gene074400:intron | 50.0% | |
| ! | ACGGAAGCTTGGTGGTCTTA+GGG | - | chr3.4:75203932-75203951 | MS.gene074400:intron | 50.0% |
| ! | ATGGACGGGCTTTGTGGTAA+CGG | + | chr3.4:75204243-75204262 | None:intergenic | 50.0% |
| ! | TCTTTTCCAGTTTGCCCTGC+GGG | + | chr3.4:75204266-75204285 | None:intergenic | 50.0% |
| ! | TTTGGTTGTGATGTGCTGGC+TGG | - | chr3.4:75204015-75204034 | MS.gene074400:intron | 50.0% |
| !! | ACTTGAGTTGGGTAACTCCC+TGG | + | chr3.4:75203872-75203891 | None:intergenic | 50.0% |
| AGTTCCCTGTGCTTGTGGAC+TGG | + | chr3.4:75204166-75204185 | None:intergenic | 55.0% | |
| CAACCCAGTCCACAAGCACA+GGG | - | chr3.4:75204159-75204178 | MS.gene074400:CDS | 55.0% | |
| CACAAGCACAGGGAACTTCG+TGG | - | chr3.4:75204169-75204188 | MS.gene074400:CDS | 55.0% | |
| CACGAAGTTCCCTGTGCTTG+TGG | + | chr3.4:75204171-75204190 | None:intergenic | 55.0% | |
| CTTCGTGGTCTCACTTCTGC+TGG | - | chr3.4:75204184-75204203 | MS.gene074400:CDS | 55.0% | |
| GAGTTGGGTAACTCCCTGGT+TGG | + | chr3.4:75203868-75203887 | None:intergenic | 55.0% | |
| GTTCCCTGTGCTTGTGGACT+GGG | + | chr3.4:75204165-75204184 | None:intergenic | 55.0% | |
| TACGCAGAGGTGGTAGGAAG+AGG | - | chr3.4:75203808-75203827 | MS.gene074400:intron | 55.0% | |
| TCATGCAACGTGTGAGGTGC+TGG | - | chr3.4:75202873-75202892 | MS.gene074400:CDS | 55.0% | |
| TGGGTAACTCCCTGGTTGGT+GGG | + | chr3.4:75203864-75203883 | None:intergenic | 55.0% | |
| TTGGGTAACTCCCTGGTTGG+TGG | + | chr3.4:75203865-75203884 | None:intergenic | 55.0% | |
| TTGTAACTTCTGCCCCACCC+AGG | + | chr3.4:75203300-75203319 | None:intergenic | 55.0% | |
| ! | CATGCAACGTGTGAGGTGCT+GGG | - | chr3.4:75202874-75202893 | MS.gene074400:CDS | 55.0% |
| ! | GACGGAAGCTTGGTGGTCTT+AGG | - | chr3.4:75203931-75203950 | MS.gene074400:intron | 55.0% |
| AGTTTGCCCTGCGGGATGGA+CGG | + | chr3.4:75204258-75204277 | None:intergenic | 60.0% | |
| CAGACCCACTCGTCCTGACA+AGG | - | chr3.4:75202931-75202950 | MS.gene074400:CDS | 60.0% | |
| CCAACCCAGTCCACAAGCAC+AGG | - | chr3.4:75204158-75204177 | MS.gene074400:CDS | 60.0% | |
| CCTGACAAGGCTCGCCGTTT+GGG | - | chr3.4:75202944-75202963 | MS.gene074400:intron | 60.0% | |
| CTTGTCAGGACGAGTGGGTC+TGG | + | chr3.4:75202933-75202952 | None:intergenic | 60.0% | |
| TCCAGCACGCTCTTCAGCGA+CGG | + | chr3.4:75203913-75203932 | None:intergenic | 60.0% | |
| TCCTGACAAGGCTCGCCGTT+TGG | - | chr3.4:75202943-75202962 | MS.gene074400:intron | 60.0% | |
| TTCCAGTTTGCCCTGCGGGA+TGG | + | chr3.4:75204262-75204281 | None:intergenic | 60.0% | |
| ! | AACGGTAACGGCGGAGAGAC+AGG | + | chr3.4:75204297-75204316 | None:intergenic | 60.0% |
| ! | ACGGTAACGGCGGAGAGACA+GGG | + | chr3.4:75204296-75204315 | None:intergenic | 60.0% |
| ! | CGAGCCTTGTCAGGACGAGT+GGG | + | chr3.4:75202938-75202957 | None:intergenic | 60.0% |
| ! | GGCTCGCCGTTTGGGTTACA+AGG | - | chr3.4:75202952-75202971 | MS.gene074400:intron | 60.0% |
| ! | TCGCTGAAGAGCGTGCTGGA+CGG | - | chr3.4:75203913-75203932 | MS.gene074400:intron | 60.0% |
| ! | TGAGGGTACGCAGAGGTGGT+AGG | - | chr3.4:75203802-75203821 | MS.gene074400:intron | 60.0% |
| !! | CCTGTGCTTGTGGACTGGGT+TGG | + | chr3.4:75204161-75204180 | None:intergenic | 60.0% |
| ACAAAGCCCGTCCATCCCGC+AGG | - | chr3.4:75204248-75204267 | MS.gene074400:intron | 65.0% | |
| CAAAGCCCGTCCATCCCGCA+GGG | - | chr3.4:75204249-75204268 | MS.gene074400:intron | 65.0% | |
| CACCTCTGCGTACCCTCACC+CGG | + | chr3.4:75203800-75203819 | None:intergenic | 65.0% | |
| CGTGCTGGACGGAAGCTTGG+TGG | - | chr3.4:75203924-75203943 | MS.gene074400:intron | 65.0% | |
| GAGCGTGCTGGACGGAAGCT+TGG | - | chr3.4:75203921-75203940 | MS.gene074400:intron | 65.0% | |
| GTCCATCCCGCAGGGCAAAC+TGG | - | chr3.4:75204257-75204276 | MS.gene074400:intron | 65.0% | |
| GTTTGCCCTGCGGGATGGAC+GGG | + | chr3.4:75204257-75204276 | None:intergenic | 65.0% | |
| ! | CCCAAACGGCGAGCCTTGTC+AGG | + | chr3.4:75202947-75202966 | None:intergenic | 65.0% |
| ! | GCGAGCCTTGTCAGGACGAG+TGG | + | chr3.4:75202939-75202958 | None:intergenic | 65.0% |
| ! | TACCGGGTGAGGGTACGCAG+AGG | - | chr3.4:75203795-75203814 | MS.gene074400:intron | 65.0% |
| ! | TCCGTCGCTGAAGAGCGTGC+TGG | - | chr3.4:75203909-75203928 | MS.gene074400:intron | 65.0% |
| ! | TGCGGGATGGACGGGCTTTG+TGG | + | chr3.4:75204249-75204268 | None:intergenic | 65.0% |
| ! | CGGGTGAGGGTACGCAGAGG+TGG | - | chr3.4:75203798-75203817 | MS.gene074400:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75202715 | 75204318 | 75202715 | ID=MS.gene074400 |
| chr3.4 | mRNA | 75202715 | 75204318 | 75202715 | ID=MS.gene074400.t1;Parent=MS.gene074400 |
| chr3.4 | exon | 75204315 | 75204318 | 75204315 | ID=MS.gene074400.t1.exon1;Parent=MS.gene074400.t1 |
| chr3.4 | CDS | 75204315 | 75204318 | 75204315 | ID=cds.MS.gene074400.t1;Parent=MS.gene074400.t1 |
| chr3.4 | exon | 75204051 | 75204217 | 75204051 | ID=MS.gene074400.t1.exon2;Parent=MS.gene074400.t1 |
| chr3.4 | CDS | 75204051 | 75204217 | 75204051 | ID=cds.MS.gene074400.t1;Parent=MS.gene074400.t1 |
| chr3.4 | exon | 75203053 | 75203250 | 75203053 | ID=MS.gene074400.t1.exon3;Parent=MS.gene074400.t1 |
| chr3.4 | CDS | 75203053 | 75203250 | 75203053 | ID=cds.MS.gene074400.t1;Parent=MS.gene074400.t1 |
| chr3.4 | exon | 75202715 | 75202960 | 75202715 | ID=MS.gene074400.t1.exon4;Parent=MS.gene074400.t1 |
| chr3.4 | CDS | 75202715 | 75202960 | 75202715 | ID=cds.MS.gene074400.t1;Parent=MS.gene074400.t1 |
| Gene Sequence |
| Protein sequence |
