AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038837

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038837.t1 MTR_0011s0330 87.075 147 0 1 1 147 1 128 6.97e-87 249
MS.gene038837.t1 MTR_4g114330 85.034 147 3 1 1 147 1 128 2.39e-84 243
MS.gene038837.t1 MTR_4g112780 36.207 116 72 2 8 121 21 136 1.84e-16 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038837.t1 AT4G22380 81.633 147 8 1 1 147 1 128 1.15e-72 214
MS.gene038837.t1 AT5G20160 80.952 147 9 1 1 147 1 128 5.44e-72 212
MS.gene038837.t1 AT4G12600 79.592 147 11 1 1 147 1 128 1.38e-69 206
MS.gene038837.t1 AT5G20160 66.480 179 9 2 1 147 1 160 2.22e-65 196
MS.gene038837.t1 AT4G12600 50.990 202 25 3 1 147 1 183 9.42e-45 145
MS.gene038837.t1 AT5G20160 64.815 108 6 1 1 76 1 108 6.07e-31 107
MS.gene038837.t1 AT5G08180 36.508 126 67 2 5 119 21 144 3.28e-21 84.3
MS.gene038837.t1 AT5G08180 36.508 126 67 2 5 119 21 144 3.28e-21 84.3

Find 28 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCCAAAGGGTAAGCTTT+TGG 0.274630 2.1:+36462805 None:intergenic
TAATTACAAGCAACTCAAAA+AGG 0.282256 2.1:-36462737 MS.gene038837:CDS
TCCTTTACTCGCTGAGGATA+AGG 0.365424 2.1:-36462461 MS.gene038837:intron
TGTTATAATGCCAACACATT+TGG 0.379285 2.1:-36459356 MS.gene038837:CDS
AATCAAAAGCACACCTTCAT+TGG 0.389057 2.1:+36462711 None:intergenic
ACAACTTACGATAACGATAA+TGG 0.396702 2.1:-36462779 MS.gene038837:CDS
TTTAAGTTGACTTCCCTCAT+TGG 0.429117 2.1:+36459453 None:intergenic
CATTTCTGAGTTTGTTGTGA+TGG 0.445083 2.1:-36462521 MS.gene038837:CDS
TTTGGACATTCTTGATATGC+AGG 0.446711 2.1:-36459338 MS.gene038837:CDS
ATTATAACAGCTAATAAAGT+TGG 0.447137 2.1:+36459370 None:intergenic
TTTGATGGGACAAATACATA+AGG 0.470260 2.1:+36459535 None:intergenic
GAATCCAAAAGCTTACCCTT+TGG 0.476923 2.1:-36462809 MS.gene038837:CDS
GTCACAGAACATGCAATCAC+TGG 0.528661 2.1:+36459478 None:intergenic
ATCTCAAATACAGCAACTAA+AGG 0.530724 2.1:-36459431 MS.gene038837:intron
ACCTTATCCTCAGCGAGTAA+AGG 0.534236 2.1:+36462460 None:intergenic
CAGAACATGCAATCACTGGC+CGG 0.535766 2.1:+36459482 None:intergenic
GTCCCATCAAAACAAGCACT+TGG 0.547834 2.1:-36459523 MS.gene038837:CDS
TCATCTTCCTTTACTCGCTG+AGG 0.553114 2.1:-36462467 MS.gene038837:CDS
GACGAGCATGTGGTGTGACC+CGG 0.557034 2.1:-36459501 MS.gene038837:CDS
TAAGTTGTGCATCAGCCAAA+GGG 0.569151 2.1:+36462794 None:intergenic
AGAACATGCAATCACTGGCC+GGG 0.572135 2.1:+36459483 None:intergenic
TCAAGAATGTCCAAATGTGT+TGG 0.574186 2.1:+36459346 None:intergenic
GTAAGTTGTGCATCAGCCAA+AGG 0.580950 2.1:+36462793 None:intergenic
CAAGCACTTGGACGAGCATG+TGG 0.613075 2.1:-36459511 MS.gene038837:CDS
TGTTCTGTGACAACCAATGA+GGG 0.643609 2.1:-36459466 MS.gene038837:CDS
AGATGAAGAAGAATCTCAAG+TGG 0.658274 2.1:+36462484 None:intergenic
ATGTTCTGTGACAACCAATG+AGG 0.691643 2.1:-36459467 MS.gene038837:CDS
GCTACAAAGACACTTAACAG+AGG 0.744755 2.1:-36462544 MS.gene038837:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAATAAAAAAAT+AGG + chr2.1:36459822-36459841 None:intergenic 0.0%
!!! TTATTATTTTTTTTTTTATT+TGG + chr2.1:36461184-36461203 None:intergenic 0.0%
!!! TTTTATTTTTTATTTTTTAT+GGG - chr2.1:36459923-36459942 MS.gene038837:intron 0.0%
!! AAAATATACAAAAAAAACAA+AGG + chr2.1:36461687-36461706 None:intergenic 10.0%
!! AATAATTCAAAAAAATGAAT+AGG + chr2.1:36459336-36459355 None:intergenic 10.0%
!!! ATCTAATTTATTTTCAATTT+TGG - chr2.1:36460877-36460896 MS.gene038837:intron 10.0%
!!! GTATATTTTAATTGAAAAAT+TGG - chr2.1:36461698-36461717 MS.gene038837:intron 10.0%
!!! TAATTGAATTATGAATATTT+TGG - chr2.1:36460417-36460436 MS.gene038837:intron 10.0%
!! AAGACATTGAAATTAATTAT+AGG + chr2.1:36462412-36462431 None:intergenic 15.0%
!! ATTACTTCTTATCAAATAAT+CGG - chr2.1:36462219-36462238 MS.gene038837:intron 15.0%
!! GTGTAATATAAAATTGATAT+CGG + chr2.1:36461757-36461776 None:intergenic 15.0%
!! TGAAAATTCAAATAATTACA+TGG + chr2.1:36462671-36462690 None:intergenic 15.0%
!! TTATTTGATAAGAAGTAATT+TGG + chr2.1:36462218-36462237 None:intergenic 15.0%
!!! ATTTTTATTTTCAGTTTCTA+TGG - chr2.1:36459565-36459584 MS.gene038837:intron 15.0%
!!! CATGAATAAATATTTCTATT+TGG + chr2.1:36460702-36460721 None:intergenic 15.0%
!!! TAGTAAAATGATTTATGTTT+TGG - chr2.1:36460495-36460514 MS.gene038837:intron 15.0%
!!! TTTAATGGAAATTGTTTTAT+TGG - chr2.1:36462122-36462141 MS.gene038837:intron 15.0%
!! AAAAAGAAAAAGTGGTATTA+GGG - chr2.1:36459590-36459609 MS.gene038837:intron 20.0%
!! ATTATAACAGCTAATAAAGT+TGG + chr2.1:36462866-36462885 None:intergenic 20.0%
!! ATTTGAGGGATTTAAAAATT+AGG - chr2.1:36461826-36461845 MS.gene038837:intron 20.0%
!! CCTCTATTGAAAAAATAAAT+TGG - chr2.1:36460806-36460825 MS.gene038837:intron 20.0%
!! GATTATTAATCACATTGTAA+TGG + chr2.1:36461115-36461134 None:intergenic 20.0%
!! TAAAAAGAAAAAGTGGTATT+AGG - chr2.1:36459589-36459608 MS.gene038837:intron 20.0%
!! TTAATTTATGACAGTTGAAA+AGG - chr2.1:36462638-36462657 MS.gene038837:intron 20.0%
!!! AAACTAAAATCTTGTTCTTT+TGG - chr2.1:36460846-36460865 MS.gene038837:intron 20.0%
!!! AAATTGTTTTATTGGTAAGT+TGG - chr2.1:36462130-36462149 MS.gene038837:intron 20.0%
!!! AACTAAAATCTTGTTCTTTT+GGG - chr2.1:36460847-36460866 MS.gene038837:intron 20.0%
!!! CCAATTTATTTTTTCAATAG+AGG + chr2.1:36460809-36460828 None:intergenic 20.0%
!!! TCAATGTCTTTTTAAAATTG+TGG - chr2.1:36462422-36462441 MS.gene038837:intron 20.0%
!!! TCATTGAATTCTGATTTTTT+TGG + chr2.1:36461052-36461071 None:intergenic 20.0%
!!! TTTTAATTGAACTCGTATTT+TGG - chr2.1:36460631-36460650 MS.gene038837:intron 20.0%
! AAACAAAACAGACAAAAGAA+AGG + chr2.1:36460757-36460776 None:intergenic 25.0%
! AACAAAACAGACAAAAGAAA+GGG + chr2.1:36460756-36460775 None:intergenic 25.0%
! AATAGGCAATTAACATTTGT+TGG + chr2.1:36459805-36459824 None:intergenic 25.0%
! AATTACAAGCAACTCAAAAA+GGG - chr2.1:36459497-36459516 MS.gene038837:CDS 25.0%
! ATCATAGAAAAAGACTACTA+GGG + chr2.1:36461262-36461281 None:intergenic 25.0%
! ATGAGAGATTATTAATCAGA+TGG + chr2.1:36460995-36461014 None:intergenic 25.0%
! ATTATAGGTATAAGACAATG+TGG + chr2.1:36462397-36462416 None:intergenic 25.0%
! CAAAAAAATGAATAGGAGAA+AGG + chr2.1:36459329-36459348 None:intergenic 25.0%
! CAAAGTCTAAACAAATCAAA+GGG + chr2.1:36460308-36460327 None:intergenic 25.0%
! CTATGGTTAAAAAGAAAAAG+TGG - chr2.1:36459582-36459601 MS.gene038837:intron 25.0%
! GAATAATATCAAGCAAAACA+TGG + chr2.1:36462834-36462853 None:intergenic 25.0%
! GAATGAAGAAAATTGAGAAA+CGG + chr2.1:36459368-36459387 None:intergenic 25.0%
! TAATTACAAGCAACTCAAAA+AGG - chr2.1:36459496-36459515 MS.gene038837:CDS 25.0%
! TAGTTTAGATTCATTTCTTG+TGG - chr2.1:36461885-36461904 MS.gene038837:intron 25.0%
! TCAAAGTCTAAACAAATCAA+AGG + chr2.1:36460309-36460328 None:intergenic 25.0%
! TGATAAGAAGTAATTTGGTA+GGG + chr2.1:36462213-36462232 None:intergenic 25.0%
! TTGATAAGAAGTAATTTGGT+AGG + chr2.1:36462214-36462233 None:intergenic 25.0%
! TTTCTATTCATTCATGTTCT+TGG - chr2.1:36462611-36462630 MS.gene038837:intron 25.0%
!! ATTTGGCATATATTGGTAAT+AGG + chr2.1:36462543-36462562 None:intergenic 25.0%
!! CTTTTTATTAAGTTTCGTTG+TGG - chr2.1:36462180-36462199 MS.gene038837:intron 25.0%
!!! AAATATGTCTGTGTTTTTGA+AGG - chr2.1:36459840-36459859 MS.gene038837:intron 25.0%
!!! AATATGTCTGTGTTTTTGAA+GGG - chr2.1:36459841-36459860 MS.gene038837:intron 25.0%
AATGTGGATAGAGATTTAGA+AGG - chr2.1:36460049-36460068 MS.gene038837:intron 30.0%
ACAACTTACGATAACGATAA+TGG - chr2.1:36459454-36459473 MS.gene038837:CDS 30.0%
ACCAAAAGAACCAAAGTTAT+AGG + chr2.1:36461729-36461748 None:intergenic 30.0%
AGCAGAAACAACAAAAACAA+GGG + chr2.1:36461659-36461678 None:intergenic 30.0%
AGGCATTACAAATTTCAACA+TGG + chr2.1:36462073-36462092 None:intergenic 30.0%
AGTCTGGAAAAAACAAAACA+GGG + chr2.1:36462578-36462597 None:intergenic 30.0%
ATACAAACAAAACAGACCAA+AGG - chr2.1:36460926-36460945 MS.gene038837:intron 30.0%
ATCTCAAATACAGCAACTAA+AGG - chr2.1:36462802-36462821 MS.gene038837:CDS 30.0%
ATGATAACATGTTTGAACAG+AGG + chr2.1:36461992-36462011 None:intergenic 30.0%
CATCATAGAAAAAGACTACT+AGG + chr2.1:36461263-36461282 None:intergenic 30.0%
CTAGTGTTAGATTTCTACAT+TGG + chr2.1:36461392-36461411 None:intergenic 30.0%
GTGTGATCGTTGAAAATTTA+AGG + chr2.1:36462368-36462387 None:intergenic 30.0%
TACAAACAAAACAGACCAAA+GGG - chr2.1:36460927-36460946 MS.gene038837:intron 30.0%
TAGTCTGGAAAAAACAAAAC+AGG + chr2.1:36462579-36462598 None:intergenic 30.0%
TCAGTCAATTTGGCATATAT+TGG + chr2.1:36462550-36462569 None:intergenic 30.0%
TCATCTTATCAACACATAAG+TGG - chr2.1:36461011-36461030 MS.gene038837:intron 30.0%
TGAATGAATAGAAATAGCTG+TGG + chr2.1:36462605-36462624 None:intergenic 30.0%
TGATGTCCATACAAATCAAA+AGG - chr2.1:36461297-36461316 MS.gene038837:intron 30.0%
TGTTATAATGCCAACACATT+TGG - chr2.1:36462877-36462896 MS.gene038837:intron 30.0%
TTATCAAATAATCGGTGTAG+CGG - chr2.1:36462227-36462246 MS.gene038837:intron 30.0%
TTGTTCATATATAAGCCCTT+TGG + chr2.1:36460945-36460964 None:intergenic 30.0%
TTTGATGGGACAAATACATA+AGG + chr2.1:36462701-36462720 None:intergenic 30.0%
!!! TTTTTTTGTTTGTTGCAGAC+AGG - chr2.1:36459392-36459411 MS.gene038837:intron 30.0%
ACTATGGAAAGACACTACTA+GGG - chr2.1:36460342-36460361 MS.gene038837:intron 35.0%
AGAAGTAATTTGGTAGGGTA+AGG + chr2.1:36462208-36462227 None:intergenic 35.0%
AGATGAAGAAGAATCTCAAG+TGG + chr2.1:36459752-36459771 None:intergenic 35.0%
AGCAGCAATAACAGTAACAA+TGG + chr2.1:36459895-36459914 None:intergenic 35.0%
ATATCTCATCAACACGTAAG+TGG + chr2.1:36460455-36460474 None:intergenic 35.0%
ATTGGTAGAGCCTATAACTT+TGG - chr2.1:36461716-36461735 MS.gene038837:intron 35.0%
CAGCAGAAACAACAAAAACA+AGG + chr2.1:36461660-36461679 None:intergenic 35.0%
GAGTACAGAGCTTAGAAATT+TGG + chr2.1:36460521-36460540 None:intergenic 35.0%
GATTCATTTCTTGTGGAAAG+TGG - chr2.1:36461892-36461911 MS.gene038837:intron 35.0%
GTCTGGAAAAAACAAAACAG+GGG + chr2.1:36462577-36462596 None:intergenic 35.0%
TCAAGAATGTCCAAATGTGT+TGG + chr2.1:36462890-36462909 None:intergenic 35.0%
TCAAGTAAGTATGAGTTCAG+AGG - chr2.1:36461205-36461224 MS.gene038837:intron 35.0%
TCTGCTGTTAATGCATTTGA+GGG - chr2.1:36461812-36461831 MS.gene038837:intron 35.0%
TGAATAGGAGAAAGGAAACA+AGG + chr2.1:36459321-36459340 None:intergenic 35.0%
TGACGTAGACATAATCACTA+TGG - chr2.1:36460326-36460345 MS.gene038837:intron 35.0%
TGATTTATGACTAGTGCAAC+TGG - chr2.1:36459620-36459639 MS.gene038837:intron 35.0%
TGGAGATTCAGAAGGAAAAA+AGG + chr2.1:36461530-36461549 None:intergenic 35.0%
TGTCATGAATGCAATCATGT+TGG + chr2.1:36461926-36461945 None:intergenic 35.0%
TGTTAAAGTAATCTGTGCAG+TGG - chr2.1:36462157-36462176 MS.gene038837:intron 35.0%
TTTGGACATTCTTGATATGC+AGG - chr2.1:36462895-36462914 MS.gene038837:intron 35.0%
! AATCAAAAGCACACCTTCAT+TGG + chr2.1:36459525-36459544 None:intergenic 35.0%
! ATTATTGCGTTGGTCTGTTA+GGG - chr2.1:36460223-36460242 MS.gene038837:intron 35.0%
! CTTTGGGAGGGATTATTTAA+TGG - chr2.1:36462107-36462126 MS.gene038837:intron 35.0%
! GGCATATATTGGTAATAGGT+CGG + chr2.1:36462539-36462558 None:intergenic 35.0%
! TTATCATTTGACTTCCCAAG+CGG - chr2.1:36462005-36462024 MS.gene038837:intron 35.0%
!! AAAGCTTGTTACTTCAACAC+TGG + chr2.1:36461618-36461637 None:intergenic 35.0%
!! AAGCTTGTTACTTCAACACT+GGG + chr2.1:36461617-36461636 None:intergenic 35.0%
!! CATTTCTGAGTTTGTTGTGA+TGG - chr2.1:36459712-36459731 MS.gene038837:intron 35.0%
!! TTTAAGTTGACTTCCCTCAT+TGG + chr2.1:36462783-36462802 None:intergenic 35.0%
!! TTTCTACATTGGTCTTGTAG+TGG + chr2.1:36461381-36461400 None:intergenic 35.0%
!!! ACTGGCTAAAAGATTGGTTT+TGG + chr2.1:36462309-36462328 None:intergenic 35.0%
!!! CTGGCTAAAAGATTGGTTTT+GGG + chr2.1:36462308-36462327 None:intergenic 35.0%
!!! GCCTATAACTTTGGTTCTTT+TGG - chr2.1:36461725-36461744 MS.gene038837:intron 35.0%
!!! GCTTTTTTTCCTCTCAAACA+TGG - chr2.1:36461633-36461652 MS.gene038837:intron 35.0%
!!! TGGCTAAAAGATTGGTTTTG+GGG + chr2.1:36462307-36462326 None:intergenic 35.0%
AAACTCAAATGCATACCGCT+TGG + chr2.1:36462023-36462042 None:intergenic 40.0%
AACTCAAATGCATACCGCTT+GGG + chr2.1:36462022-36462041 None:intergenic 40.0%
AATCACTGGTGGAACCAATA+TGG - chr2.1:36460145-36460164 MS.gene038837:intron 40.0%
AATGAGCATCAAGAGGACAA+CGG - chr2.1:36461325-36461344 MS.gene038837:intron 40.0%
ACTAGTGCAACTGGATTGAA+TGG - chr2.1:36459629-36459648 MS.gene038837:intron 40.0%
ATGTTCTGTGACAACCAATG+AGG - chr2.1:36462766-36462785 MS.gene038837:CDS 40.0%
CACTATGGAAAGACACTACT+AGG - chr2.1:36460341-36460360 MS.gene038837:intron 40.0%
CACTGTATCACTAAGCTTCA+CGG + chr2.1:36462334-36462353 None:intergenic 40.0%
CAGGGGAATATCAGTCAATT+TGG + chr2.1:36462560-36462579 None:intergenic 40.0%
CCTAAACCAATTCTCAACCA+TGG + chr2.1:36460254-36460273 None:intergenic 40.0%
CCTGCAAAAACCAATAGAAG+CGG - chr2.1:36461495-36461514 MS.gene038837:intron 40.0%
CGAAAAACCAACAGAAGGAA+TGG + chr2.1:36460105-36460124 None:intergenic 40.0%
CTCTGCTGTTAATGCATTTG+AGG - chr2.1:36461811-36461830 MS.gene038837:intron 40.0%
CTTCCCACTTTGTGAACTTT+GGG - chr2.1:36462091-36462110 MS.gene038837:intron 40.0%
GAATCCAAAAGCTTACCCTT+TGG - chr2.1:36459424-36459443 MS.gene038837:intron 40.0%
GCTACAAAGACACTTAACAG+AGG - chr2.1:36459689-36459708 MS.gene038837:intron 40.0%
GGTAAACCATGGTTGAGAAT+TGG - chr2.1:36460245-36460264 MS.gene038837:intron 40.0%
GTCTGGTTAGATTATTGCGT+TGG - chr2.1:36460213-36460232 MS.gene038837:intron 40.0%
GTTTGAACAGAGGTTTCCTT+TGG + chr2.1:36461982-36462001 None:intergenic 40.0%
TAAGTTGTGCATCAGCCAAA+GGG + chr2.1:36459442-36459461 None:intergenic 40.0%
TCCTTCGAAAAACCAACAGA+AGG + chr2.1:36460110-36460129 None:intergenic 40.0%
TGGTGGAACCAATATGGTTT+GGG - chr2.1:36460151-36460170 MS.gene038837:intron 40.0%
TGTTCTGTGACAACCAATGA+GGG - chr2.1:36462767-36462786 MS.gene038837:CDS 40.0%
TTGTCCTCTTGATGCTCATT+GGG + chr2.1:36461325-36461344 None:intergenic 40.0%
TTTATGGGGCAATGTTTGAG+AGG - chr2.1:36459938-36459957 MS.gene038837:intron 40.0%
! CCATGGTTGAGAATTGGTTT+AGG - chr2.1:36460251-36460270 MS.gene038837:intron 40.0%
! GATTATTGCGTTGGTCTGTT+AGG - chr2.1:36460222-36460241 MS.gene038837:intron 40.0%
! TTATTGCGTTGGTCTGTTAG+GGG - chr2.1:36460224-36460243 MS.gene038837:intron 40.0%
!! AGCTTGTTACTTCAACACTG+GGG + chr2.1:36461616-36461635 None:intergenic 40.0%
!! TAGTGATGGATCTTGTGAAG+TGG - chr2.1:36459996-36460015 MS.gene038837:intron 40.0%
!! TTGGTTTTTCGAAGGACATG+TGG - chr2.1:36460114-36460133 MS.gene038837:intron 40.0%
!!! GTCCAAGTGCTTGTTTTGAT+GGG + chr2.1:36462715-36462734 None:intergenic 40.0%
!!! TCCTTCTGTTGGTTTTTCGA+AGG - chr2.1:36460106-36460125 MS.gene038837:intron 40.0%
!!! TGGGCACCTTTTGATTTGTA+TGG + chr2.1:36461306-36461325 None:intergenic 40.0%
AAACAAGGGCCATGTTTGAG+AGG + chr2.1:36461645-36461664 None:intergenic 45.0%
AAATAGCTGTGGCTGTAGTC+TGG + chr2.1:36462594-36462613 None:intergenic 45.0%
AAGAAATTTGCACGCTGGTC+TGG - chr2.1:36460196-36460215 MS.gene038837:intron 45.0%
AAGGTGGATGGAGATTCAGA+AGG + chr2.1:36461538-36461557 None:intergenic 45.0%
ACATGGAGAGGATTGAAAGG+TGG + chr2.1:36461554-36461573 None:intergenic 45.0%
ACCTTATCCTCAGCGAGTAA+AGG + chr2.1:36459776-36459795 None:intergenic 45.0%
CCAAAGTTCACAAAGTGGGA+AGG + chr2.1:36462093-36462112 None:intergenic 45.0%
CCTCCCAAAGTTCACAAAGT+GGG + chr2.1:36462097-36462116 None:intergenic 45.0%
CCTTCCCACTTTGTGAACTT+TGG - chr2.1:36462090-36462109 MS.gene038837:intron 45.0%
CTGGTGGAACCAATATGGTT+TGG - chr2.1:36460150-36460169 MS.gene038837:intron 45.0%
CTGTCCTCTTGATGCTCTTT+GGG - chr2.1:36460280-36460299 MS.gene038837:intron 45.0%
GATTTAGCCACCGCTTCTAT+TGG + chr2.1:36461508-36461527 None:intergenic 45.0%
GCAAAAACCAATAGAAGCGG+TGG - chr2.1:36461498-36461517 MS.gene038837:intron 45.0%
GCTATGTTCCACTTGAGTGT+TGG + chr2.1:36461154-36461173 None:intergenic 45.0%
GGTACATGGAGAGGATTGAA+AGG + chr2.1:36461557-36461576 None:intergenic 45.0%
GGTTTGGGTGACAATGTCAA+GGG + chr2.1:36461438-36461457 None:intergenic 45.0%
GTAAGTTGTGCATCAGCCAA+AGG + chr2.1:36459443-36459462 None:intergenic 45.0%
GTAGGAAGAAATTTGCACGC+TGG - chr2.1:36460191-36460210 MS.gene038837:intron 45.0%
GTCACAGAACATGCAATCAC+TGG + chr2.1:36462758-36462777 None:intergenic 45.0%
GTCCCATCAAAACAAGCACT+TGG - chr2.1:36462710-36462729 MS.gene038837:intron 45.0%
GTTGTCCTCTTGATGCTCAT+TGG + chr2.1:36461326-36461345 None:intergenic 45.0%
TCAACACTCCAACACTCAAG+TGG - chr2.1:36461143-36461162 MS.gene038837:intron 45.0%
TCATCTTCCTTTACTCGCTG+AGG - chr2.1:36459766-36459785 MS.gene038837:intron 45.0%
TCCTTTACTCGCTGAGGATA+AGG - chr2.1:36459772-36459791 MS.gene038837:intron 45.0%
TCTCTTGCCATTCCTTCTGT+TGG - chr2.1:36460095-36460114 MS.gene038837:intron 45.0%
TGAACAGAGGTTTCCTTTGG+TGG + chr2.1:36461979-36461998 None:intergenic 45.0%
TGTTACCGCCCAAACCATAT+TGG + chr2.1:36460162-36460181 None:intergenic 45.0%
TTACTTCAACACTGGGGTGA+TGG + chr2.1:36461610-36461629 None:intergenic 45.0%
! ACGGCTACTGGCTAAAAGAT+TGG + chr2.1:36462315-36462334 None:intergenic 45.0%
! CCACTTTGTGAACTTTGGGA+GGG - chr2.1:36462095-36462114 MS.gene038837:intron 45.0%
! GGTCTTGTAGTGGTAAACCA+TGG + chr2.1:36461371-36461390 None:intergenic 45.0%
! TCAGCCAAAGGGTAAGCTTT+TGG + chr2.1:36459431-36459450 None:intergenic 45.0%
! TGATGGATCTTGTGAAGTGG+CGG - chr2.1:36459999-36460018 MS.gene038837:intron 45.0%
! TGGAACCAATATGGTTTGGG+CGG - chr2.1:36460154-36460173 MS.gene038837:intron 45.0%
! TGGTTTGGGTGACAATGTCA+AGG + chr2.1:36461439-36461458 None:intergenic 45.0%
! TTGGTAATAGGTCGGATCTC+AGG + chr2.1:36462531-36462550 None:intergenic 45.0%
! TTGTGAAGTGGCGGGAAAAA+GGG - chr2.1:36460008-36460027 MS.gene038837:intron 45.0%
! TTGTGGCTAGTGTTACTGTG+CGG - chr2.1:36462439-36462458 MS.gene038837:intron 45.0%
!! AAAGAGCATCAAGAGGACAG+GGG + chr2.1:36460280-36460299 None:intergenic 45.0%
!! CAAAGAGCATCAAGAGGACA+GGG + chr2.1:36460281-36460300 None:intergenic 45.0%
!! CTCAAAAAGGGTGCCAATGA+AGG - chr2.1:36459509-36459528 MS.gene038837:CDS 45.0%
!! GTTTTTCGAAGGACATGTGG+AGG - chr2.1:36460117-36460136 MS.gene038837:intron 45.0%
!!! ATTGGTTTTTGCAGGACACG+TGG + chr2.1:36461490-36461509 None:intergenic 45.0%
!!! CCGCTTCTATTGGTTTTTGC+AGG + chr2.1:36461498-36461517 None:intergenic 45.0%
!!! CGTCCAAGTGCTTGTTTTGA+TGG + chr2.1:36462716-36462735 None:intergenic 45.0%
!! AAAAATAAAAAATAAAACAA+AGG + chr2.1:36459920-36459939 None:intergenic 5.0%
!!! GTTTTATTTTTTATTTTTTA+TGG - chr2.1:36459922-36459941 MS.gene038837:intron 5.0%
!!! TTTATTTTTTATTTTTTATG+GGG - chr2.1:36459924-36459943 MS.gene038837:intron 5.0%
AAAGCGTGTTACCTCGACAC+TGG - chr2.1:36459968-36459987 MS.gene038837:intron 50.0%
AAGCGTGTTACCTCGACACT+GGG - chr2.1:36459969-36459988 MS.gene038837:intron 50.0%
AGAACATGCAATCACTGGCC+GGG + chr2.1:36462753-36462772 None:intergenic 50.0%
ATGTGGAGGCGGTTAATCAC+TGG - chr2.1:36460131-36460150 MS.gene038837:intron 50.0%
CAGAACATGCAATCACTGGC+CGG + chr2.1:36462754-36462773 None:intergenic 50.0%
CAGGGGAGAGGATTGAAATG+TGG - chr2.1:36460033-36460052 MS.gene038837:intron 50.0%
CATTGTCACCCAAACCATGC+TGG - chr2.1:36461442-36461461 MS.gene038837:intron 50.0%
CCATGGCAGAGACTTGATTC+AGG + chr2.1:36461354-36461373 None:intergenic 50.0%
CCCACTTTGTGAACTTTGGG+AGG - chr2.1:36462094-36462113 MS.gene038837:intron 50.0%
CCCTCCCAAAGTTCACAAAG+TGG + chr2.1:36462098-36462117 None:intergenic 50.0%
CCTGAATCAAGTCTCTGCCA+TGG - chr2.1:36461351-36461370 MS.gene038837:intron 50.0%
CCTGTCCTCTTGATGCTCTT+TGG - chr2.1:36460279-36460298 MS.gene038837:intron 50.0%
GAAGGAATGGCAAGAGACAC+AGG + chr2.1:36460092-36460111 None:intergenic 50.0%
GAGTTAGCGAACTCCACCAA+AGG - chr2.1:36461963-36461982 MS.gene038837:intron 50.0%
GAGTTCGCTAACTCCACAGT+GGG + chr2.1:36461957-36461976 None:intergenic 50.0%
GATGGATCTTGTGAAGTGGC+GGG - chr2.1:36460000-36460019 MS.gene038837:intron 50.0%
GGAAAGACACTACTAGGGCA+GGG - chr2.1:36460347-36460366 MS.gene038837:intron 50.0%
GGAGAGGATTGAAAGGTGGA+TGG + chr2.1:36461550-36461569 None:intergenic 50.0%
GGTCTGTTAGGGGTAAACCA+TGG - chr2.1:36460234-36460253 MS.gene038837:intron 50.0%
TCACTAAGCTTCACGGCTAC+TGG + chr2.1:36462327-36462346 None:intergenic 50.0%
TGACACATGACTTCCCACTG+TGG - chr2.1:36461941-36461960 MS.gene038837:intron 50.0%
TGGAAAGACACTACTAGGGC+AGG - chr2.1:36460346-36460365 MS.gene038837:intron 50.0%
TGGGGCAATGTTTGAGAGGT+AGG - chr2.1:36459942-36459961 MS.gene038837:intron 50.0%
TGTGCGGTCAACTGTAAGCT+GGG - chr2.1:36462455-36462474 MS.gene038837:intron 50.0%
TTTCGAAGGACATGTGGAGG+CGG - chr2.1:36460120-36460139 MS.gene038837:intron 50.0%
TTTGGGCGGTAACAGTGTCA+CGG - chr2.1:36460168-36460187 MS.gene038837:intron 50.0%
! CTTGTGAAGTGGCGGGAAAA+AGG - chr2.1:36460007-36460026 MS.gene038837:intron 50.0%
! GGAAAAGAGGGTACATGGAG+AGG + chr2.1:36461566-36461585 None:intergenic 50.0%
! TGGTGAAGTGGCGGAAAAGA+GGG + chr2.1:36461578-36461597 None:intergenic 50.0%
!! CCAAAGAGCATCAAGAGGAC+AGG + chr2.1:36460282-36460301 None:intergenic 50.0%
AGCGTGTTACCTCGACACTG+GGG - chr2.1:36459970-36459989 MS.gene038837:intron 55.0%
CAAGCACTTGGACGAGCATG+TGG - chr2.1:36462722-36462741 MS.gene038837:intron 55.0%
CGGTGGAACCAGCATGGTTT+GGG + chr2.1:36461453-36461472 None:intergenic 55.0%
CTGTGCGGTCAACTGTAAGC+TGG - chr2.1:36462454-36462473 MS.gene038837:intron 55.0%
GGAGTTCGCTAACTCCACAG+TGG + chr2.1:36461958-36461977 None:intergenic 55.0%
GGGCGTGTCATGTGTGATTG+TGG - chr2.1:36459861-36459880 MS.gene038837:intron 55.0%
GGTGCCCAATGAGCATCAAG+AGG - chr2.1:36461318-36461337 MS.gene038837:intron 55.0%
TCACTATCACCCCAGTGTCG+AGG + chr2.1:36459982-36460001 None:intergenic 55.0%
TGGAGGCGGTTAATCACTGG+TGG - chr2.1:36460134-36460153 MS.gene038837:intron 55.0%
TTGGGCGGTAACAGTGTCAC+GGG - chr2.1:36460169-36460188 MS.gene038837:intron 55.0%
! AGTGGCGGGAAAAAGGGTAC+AGG - chr2.1:36460014-36460033 MS.gene038837:intron 55.0%
! CGACACTGGGGTGATAGTGA+TGG - chr2.1:36459982-36460001 MS.gene038837:intron 55.0%
! CTGGTGAAGTGGCGGAAAAG+AGG + chr2.1:36461579-36461598 None:intergenic 55.0%
! CTTCAACACTGGGGTGATGG+TGG + chr2.1:36461607-36461626 None:intergenic 55.0%
! GGAAAAAGGGTACAGGGGAG+AGG - chr2.1:36460021-36460040 MS.gene038837:intron 55.0%
! GTGGCGGAAAAGAGGGTACA+TGG + chr2.1:36461571-36461590 None:intergenic 55.0%
! GTGGCGGGAAAAAGGGTACA+GGG - chr2.1:36460015-36460034 MS.gene038837:intron 55.0%
! TGGCGGGAAAAAGGGTACAG+GGG - chr2.1:36460016-36460035 MS.gene038837:intron 55.0%
!! CCAAACCATGCTGGTTCCAC+CGG - chr2.1:36461451-36461470 MS.gene038837:intron 55.0%
!! GGTGCCCAAAGAGCATCAAG+AGG + chr2.1:36460287-36460306 None:intergenic 55.0%
ACGTGGCAGCGATTGAGCAC+CGG + chr2.1:36461473-36461492 None:intergenic 60.0%
CCGGTGGAACCAGCATGGTT+TGG + chr2.1:36461454-36461473 None:intergenic 60.0%
GACGAGCATGTGGTGTGACC+CGG - chr2.1:36462732-36462751 MS.gene038837:CDS 60.0%
GCGGTAACAGTGTCACGGGT+AGG - chr2.1:36460173-36460192 MS.gene038837:intron 60.0%
! TGGCGGATCTGGTGAAGTGG+CGG + chr2.1:36461587-36461606 None:intergenic 60.0%
!! CAACACTGGGGTGATGGTGG+CGG + chr2.1:36461604-36461623 None:intergenic 60.0%
!! TGGTGGCGGATCTGGTGAAG+TGG + chr2.1:36461590-36461609 None:intergenic 60.0%
!! GAGCACCGGTGGAACCAGCA+TGG + chr2.1:36461459-36461478 None:intergenic 65.0%
!! TGGCAGCGATTGAGCACCGG+TGG + chr2.1:36461470-36461489 None:intergenic 65.0%
!! TGGGGTGATGGTGGCGGATC+TGG + chr2.1:36461598-36461617 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 36459312 36462943 36459312 ID=MS.gene038837
chr2.1 mRNA 36459312 36462943 36459312 ID=MS.gene038837.t1;Parent=MS.gene038837
chr2.1 exon 36462941 36462943 36462941 ID=MS.gene038837.t1.exon1;Parent=MS.gene038837.t1
chr2.1 CDS 36462941 36462943 36462941 ID=cds.MS.gene038837.t1;Parent=MS.gene038837.t1
chr2.1 exon 36462725 36462845 36462725 ID=MS.gene038837.t1.exon2;Parent=MS.gene038837.t1
chr2.1 CDS 36462725 36462845 36462725 ID=cds.MS.gene038837.t1;Parent=MS.gene038837.t1
chr2.1 exon 36462462 36462565 36462462 ID=MS.gene038837.t1.exon3;Parent=MS.gene038837.t1
chr2.1 CDS 36462462 36462565 36462462 ID=cds.MS.gene038837.t1;Parent=MS.gene038837.t1
chr2.1 exon 36459432 36459563 36459432 ID=MS.gene038837.t1.exon4;Parent=MS.gene038837.t1
chr2.1 CDS 36459432 36459563 36459432 ID=cds.MS.gene038837.t1;Parent=MS.gene038837.t1
chr2.1 exon 36459312 36459395 36459312 ID=MS.gene038837.t1.exon5;Parent=MS.gene038837.t1
chr2.1 CDS 36459312 36459395 36459312 ID=cds.MS.gene038837.t1;Parent=MS.gene038837.t1
Gene Sequence

>MS.gene038837

ATGGTACCTTGTTTCCTTTCTCCTATTCATTTTTTTGAATTATTTTTATCGTTCCGTTTCTCAATTTTCTTCATTCAATCTTTTTTTGTTTGTTGCAGACAGGAGAAACAGTGAATCCAAAAGCTTACCCTTTGGCTGATGCACAACTTACGATAACGATAATGGATCTTGTTCAACAAGCTGCTAATTACAAGCAACTCAAAAAGGGTGCCAATGAAGGTGTGCTTTTGATTTATTTCTGTTTTTTGTTACGATTTTTATTTTCAGTTTCTATGGTTAAAAAGAAAAAGTGGTATTAGGGTTATGTTTGATTTATGACTAGTGCAACTGGATTGAATGGTTATGATTTTGTGTTGATTTATTTTATATGTTTTTCAGCTACAAAGACACTTAACAGAGGCATTTCTGAGTTTGTTGTGATGGCTGCAGACACTGAACCACTTGAGATTCTTCTTCATCTTCCTTTACTCGCTGAGGATAAGGTTAATTTCCAACAAATGTTAATTGCCTATTTTTTTATTTTTTTTTAAATATGTCTGTGTTTTTGAAGGGCGTGTCATGTGTGATTGTGGTCATTTTTCCATTGTTACTGTTATTGCTGCTATCCTTTGTTTTATTTTTTATTTTTTATGGGGCAATGTTTGAGAGGTAGGTGAAAAGCGTGTTACCTCGACACTGGGGTGATAGTGATGGATCTTGTGAAGTGGCGGGAAAAAGGGTACAGGGGAGAGGATTGAAATGTGGATAGAGATTTAGAAGGTAGAAAGTATTTATGAGCCTGTGTCTCTTGCCATTCCTTCTGTTGGTTTTTCGAAGGACATGTGGAGGCGGTTAATCACTGGTGGAACCAATATGGTTTGGGCGGTAACAGTGTCACGGGTAGGAAGAAATTTGCACGCTGGTCTGGTTAGATTATTGCGTTGGTCTGTTAGGGGTAAACCATGGTTGAGAATTGGTTTAGGAAACCCCTGTCCTCTTGATGCTCTTTGGGCACCCTTTGATTTGTTTAGACTTTGACGTAGACATAATCACTATGGAAAGACACTACTAGGGCAGGGCAATAAGTTCATGTTTATGCTAATTTTCTAAGTTATGTACTTTTATTTAATTGAATTATGAATATTTTGGTCAATTTTTGTTCCACTTACGTGTTGATGAGATATGATTATTAGTAAAATATTATTAGTAAAATGATTTATGTTTTGGCCAAATTTCTAAGCTCTGTACTCTTTTTTTTTTTTGATGAGATATGATTATTAGTAAAATATTATTAGTAAAATGATTTATGTTTTGGCCAAATTTCTAAGCTCTGTACTCTTTTTTAATTGAACTCGTATTTTGGTTGATTTTTTTTTTTCTACTTCTGTTGATGAGATGCAATTAATAACCAAATAGAAATATTTATTCATGATTTTTCAGTATTTACTTAATTTATTACAAGCCCTTTCTTTTGTCTGTTTTGTTTGTTTTCTATTTAATTAATTTGATTTAATTCCTCTATTGAAAAAATAAATTGGATGAAGAACAGAAAAATAAACTAAAATCTTGTTCTTTTGGGTTACTTCATCTAATTTATTTTCAATTTTGGAATTAAATCAAATAAAATTCAATATTATACAAACAAAACAGACCAAAGGGCTTATATATGAACAAATACTAGAAAACTATGACTAAACATTACCATCTGATTAATAATCTCTCATCTTATCAACACATAAGTGGAACAAAAAACATTAACCAAAAAAATCAGAATTCAATGAAACAATAGTAAAGAGCTTAGAAATTTAGAAGAAAAATGAACCATTACAATGTGATTAATAATCTAATCTCATCAACACTCCAACACTCAAGTGGAACATAGCAAATTAACCAAATAAAAAAAAAAATAATAATTCAAGTAAGTATGAGTTCAGAGGCTAAAATTTTAGCAGAAACATGAACAAATTGCCCTAGTAGTCTTTTTCTATGATGATTCATGTCTACGTTGATGTCCATACAAATCAAAAGGTGCCCAATGAGCATCAAGAGGACAACGGTTTCCTGAATCAAGTCTCTGCCATGGTTTACCACTACAAGACCAATGTAGAAATCTAACACTAGCAGCACGCAAATGTCTACGATTACCCTTGACATTGTCACCCAAACCATGCTGGTTCCACCGGTGCTCAATCGCTGCCACGTGTCCTGCAAAAACCAATAGAAGCGGTGGCTAAATCCTTTTTTCCTTCTGAATCTCCATCCACCTTTCAATCCTCTCCATGTACCCTCTTTTCCGCCACTTCACCAGATCCGCCACCATCACCCCAGTGTTGAAGTAACAAGCTTTTTTTCCTCTCAAACATGGCCCTTGTTTTTGTTGTTTCTGCTGCTGTCCTTTGTTTTTTTTGTATATTTTAATTGAAAAATTGGTAGAGCCTATAACTTTGGTTCTTTTGGTTACTGCCGATATCAATTTTATATTACACATGAAAAATGTTTCAAATTTTGTTGTGCGTCTGACTCTGCTGTTAATGCATTTGAGGGATTTAAAAATTAGGAATTAGTTATTTGTGTGTGTGTGTGTATAATATATATAGTTTAGATTCATTTCTTGTGGAAAGTGGCTTGTTTTCCAACATGATTGCATTCATGACACATGACTTCCCACTGTGGAGTTAGCGAACTCCACCAAAGGAAACCTCTGTTCAAACATGTTATCATTTGACTTCCCAAGCGGTATGCATTTGAGTTTTATTTGCATTGATTATCTGCATGTATGCCATGTTGAAATTTGTAATGCCTTCCCACTTTGTGAACTTTGGGAGGGATTATTTAATGGAAATTGTTTTATTGGTAAGTTGGTAACTGTTAAAGTAATCTGTGCAGTGGCTTTTTATTAAGTTTCGTTGTGGCTCCTTACCCTACCAAATTACTTCTTATCAAATAATCGGTGTAGCGGCTTTTTATCAAGTTTCTTTGTCTTGAGCTTAAGTTGTGTTTTACTATAAACAAGCCCCAAAACCAATCTTTTAGCCAGTAGCCGTGAAGCTTAGTGATACAGTGTCTAGTTTGATCCTTAAATTTTCAACGATCACACATTGCACCACATTGTCTTATACCTATAATTAATTTCAATGTCTTTTTAAAATTGTGGCTAGTGTTACTGTGCGGTCAACTGTAAGCTGGGTATCAAGAAAAATCTTAAGATTTTTTAATAGCTATGTATGTTAATTTCATCCTGAGATCCGACCTATTACCAATATATGCCAAATTGACTGATATTCCCCTGTTTTGTTTTTTCCAGACTACAGCCACAGCTATTTCTATTCATTCATGTTCTTGGCATTTTAATTTATGACAGTTGAAAAGGCTAATAACCATGTAATTATTTGAATTTTCAGAATGTTCCTTATGTATTTGTCCCATCAAAACAAGCACTTGGACGAGCATGTGGTGTGACCCGGCCAGTGATTGCATGTTCTGTGACAACCAATGAGGGAAGTCAACTTAAATCTCAAATACAGCAACTAAAGGTATGCGCCATGTTTTGCTTGATATTATTCATGTAGTCACCAACTTTATTAGCTGTTATAATGCCAACACATTTGGACATTCTTGATATGCAGGATGCTATTGAGAAGCTGTTGATCTGA
Protein sequence

>MS.gene038837.t1

MTGETVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKSPTLLAVIMPTHLDILDMQDAIEKLLI