AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028747

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028747.t1 MTR_2g093160 87.636 550 61 3 1 544 1 549 0.0 950
MS.gene028747.t1 MTR_2g093180 84.909 550 77 2 1 544 1 550 0.0 896
MS.gene028747.t1 MTR_2g093640 81.785 549 95 1 1 544 1 549 0.0 890
MS.gene028747.t1 MTR_4g107530 35.612 556 318 9 19 543 36 582 3.21e-105 328
MS.gene028747.t1 MTR_5g038060 35.072 556 335 8 10 542 25 577 4.24e-104 325
MS.gene028747.t1 MTR_4g107580 34.888 579 331 14 1 542 4 573 7.44e-103 322
MS.gene028747.t1 MTR_4g107510 34.768 581 329 14 2 544 18 586 1.05e-101 319
MS.gene028747.t1 MTR_8g469480 34.489 548 335 8 19 544 41 586 2.89e-100 315
MS.gene028747.t1 MTR_3g112460 32.731 553 347 7 2 540 9 550 2.15e-95 301
MS.gene028747.t1 MTR_4g011280 32.981 567 337 12 4 539 15 569 2.76e-94 300
MS.gene028747.t1 MTR_2g101590 33.393 557 331 12 11 539 21 565 9.38e-94 299
MS.gene028747.t1 MTR_2g101610 32.916 559 335 12 9 539 20 566 1.01e-93 299
MS.gene028747.t1 MTR_4g107610 32.724 547 343 7 6 532 21 562 6.30e-93 296
MS.gene028747.t1 MTR_5g055000 32.609 552 342 8 16 544 18 562 7.29e-93 295
MS.gene028747.t1 MTR_4g101380 34.397 564 324 12 13 543 24 574 1.09e-92 295
MS.gene028747.t1 MTR_7g088825 31.560 564 355 11 2 542 10 565 2.62e-92 295
MS.gene028747.t1 MTR_2g101650 34.403 561 330 13 11 544 19 568 3.76e-92 294
MS.gene028747.t1 MTR_3g112470 32.188 553 350 7 2 540 9 550 3.91e-92 293
MS.gene028747.t1 MTR_7g067010 31.261 563 358 8 2 544 10 563 5.10e-92 293
MS.gene028747.t1 MTR_3g462710 31.449 566 355 10 2 544 10 565 8.40e-92 292
MS.gene028747.t1 MTR_8g469470 32.281 570 353 11 2 543 18 582 3.15e-91 291
MS.gene028747.t1 MTR_2g101640 32.984 573 339 13 1 539 1 562 3.86e-89 287
MS.gene028747.t1 MTR_4g015080 30.742 566 357 10 2 544 20 573 8.63e-89 285
MS.gene028747.t1 MTR_2g101560 33.214 560 332 11 9 539 20 566 1.28e-88 286
MS.gene028747.t1 MTR_5g038190 30.035 566 366 10 1 542 9 568 2.02e-88 284
MS.gene028747.t1 MTR_5g012290 32.977 561 339 12 10 543 21 571 2.15e-88 284
MS.gene028747.t1 MTR_4g114340 33.759 548 332 9 13 540 21 557 2.66e-88 283
MS.gene028747.t1 MTR_5g012270 31.843 559 342 10 13 543 26 573 1.65e-87 281
MS.gene028747.t1 MTR_1g057460 33.274 562 328 14 3 539 25 564 6.38e-87 280
MS.gene028747.t1 MTR_8g103233 32.737 559 337 12 8 539 7 553 2.01e-86 278
MS.gene028747.t1 MTR_1g026740 32.616 558 324 18 6 529 4 543 2.26e-85 275
MS.gene028747.t1 MTR_3g069500 32.252 555 351 11 2 544 21 562 5.47e-85 275
MS.gene028747.t1 MTR_7g088790 31.150 565 360 10 1 542 14 572 6.10e-85 275
MS.gene028747.t1 MTR_7g088820 30.824 558 357 10 8 542 17 568 8.21e-85 275
MS.gene028747.t1 MTR_1g009200 32.491 554 332 11 14 539 25 564 3.51e-82 268
MS.gene028747.t1 MTR_3g112450 32.044 543 344 9 13 540 20 552 5.99e-82 266
MS.gene028747.t1 MTR_4g033325 33.451 568 320 14 1 543 16 550 5.28e-81 264
MS.gene028747.t1 MTR_1g057460 33.010 515 304 13 44 539 1 493 5.90e-81 262
MS.gene028747.t1 MTR_1g026750 32.609 552 333 12 14 539 16 554 6.86e-81 264
MS.gene028747.t1 MTR_7g098220 30.035 566 362 8 2 544 16 570 2.20e-80 263
MS.gene028747.t1 MTR_1g042310 29.130 563 367 9 2 542 12 564 3.04e-80 263
MS.gene028747.t1 MTR_7g098160 28.322 572 360 10 2 542 19 571 4.91e-80 262
MS.gene028747.t1 MTR_7g098040 27.305 564 376 8 2 542 20 572 5.77e-80 263
MS.gene028747.t1 MTR_4g019580 31.636 550 345 10 14 544 34 571 1.26e-79 261
MS.gene028747.t1 MTR_3g069440 31.028 564 356 8 2 544 19 570 1.40e-79 261
MS.gene028747.t1 MTR_7g064780 31.685 546 351 8 8 533 18 561 1.64e-79 261
MS.gene028747.t1 MTR_7g098180 29.101 567 367 9 2 544 17 572 2.02e-79 261
MS.gene028747.t1 MTR_7g098090 28.471 569 368 9 2 542 19 576 3.43e-79 260
MS.gene028747.t1 MTR_7g098200 29.123 570 360 9 2 543 15 568 3.79e-79 260
MS.gene028747.t1 MTR_7g098200 29.204 565 356 9 2 543 15 558 1.16e-78 258
MS.gene028747.t1 MTR_3g014790 30.458 568 331 11 10 543 11 548 2.31e-78 257
MS.gene028747.t1 MTR_7g065080 30.642 545 351 9 14 544 29 560 2.92e-78 257
MS.gene028747.t1 MTR_0294s0020 32.628 567 326 11 1 543 16 550 7.11e-78 255
MS.gene028747.t1 MTR_1g075440 28.947 570 359 9 2 542 14 566 8.90e-78 256
MS.gene028747.t1 MTR_1g026770 31.022 548 344 13 15 539 14 550 9.66e-78 255
MS.gene028747.t1 MTR_7g005930 29.963 544 357 8 13 540 32 567 2.69e-77 254
MS.gene028747.t1 MTR_5g014150 30.796 565 359 10 1 540 29 586 3.00e-77 255
MS.gene028747.t1 MTR_3g462710 32.613 463 279 10 104 543 3 455 3.55e-77 251
MS.gene028747.t1 MTR_3g072300 30.335 567 356 12 2 543 10 562 2.71e-76 252
MS.gene028747.t1 MTR_7g088820 31.164 507 320 10 59 542 6 506 3.97e-76 250
MS.gene028747.t1 MTR_1g042310 29.468 526 339 9 39 542 12 527 4.53e-76 251
MS.gene028747.t1 MTR_1g042310 29.468 526 339 9 39 542 5 520 4.99e-76 250
MS.gene028747.t1 MTR_4g033315 31.041 567 337 11 1 543 16 552 9.14e-76 250
MS.gene028747.t1 MTR_4g033310 31.041 567 337 11 1 543 16 552 9.14e-76 250
MS.gene028747.t1 MTR_7g098220 30.435 529 334 8 39 544 9 526 1.02e-75 249
MS.gene028747.t1 MTR_2g093650 69.519 187 15 2 334 520 34 178 1.08e-75 239
MS.gene028747.t1 MTR_0236s0050 32.039 515 309 13 44 539 1 493 5.51e-75 246
MS.gene028747.t1 MTR_4g033330 31.927 545 317 11 1 521 16 530 1.02e-74 246
MS.gene028747.t1 MTR_1g041875 27.933 537 362 8 2 523 15 541 1.97e-74 247
MS.gene028747.t1 MTR_4g098800 30.053 569 366 12 1 543 21 583 3.04e-74 247
MS.gene028747.t1 MTR_1g041815 28.697 568 362 9 2 542 13 564 6.60e-74 246
MS.gene028747.t1 MTR_7g098230 28.330 533 338 9 39 543 49 565 7.40e-74 246
MS.gene028747.t1 MTR_7g065080 31.340 485 306 9 74 544 2 473 8.94e-74 243
MS.gene028747.t1 MTR_4g098800 29.525 569 369 11 1 543 86 648 1.04e-73 247
MS.gene028747.t1 MTR_4g033375 32.877 511 292 11 1 491 17 496 1.46e-73 243
MS.gene028747.t1 MTR_5g085850 29.650 543 356 11 13 542 27 556 2.45e-73 244
MS.gene028747.t1 MTR_4g033395 32.554 513 293 11 1 492 17 497 8.78e-73 240
MS.gene028747.t1 MTR_1g041835 27.641 568 368 9 2 542 13 564 2.44e-72 241
MS.gene028747.t1 MTR_7g064800 30.309 551 358 8 12 536 22 572 7.91e-72 240
MS.gene028747.t1 MTR_7g010820 29.895 572 358 9 1 541 11 570 9.12e-72 240
MS.gene028747.t1 MTR_3g069420 29.795 584 357 11 1 544 1 571 1.15e-71 240
MS.gene028747.t1 MTR_7g013270 29.570 558 361 9 1 540 81 624 1.31e-71 241
MS.gene028747.t1 MTR_1g116930 29.550 555 363 10 8 544 15 559 5.00e-71 238
MS.gene028747.t1 MTR_3g005010 29.350 569 339 11 1 544 15 545 6.81e-71 237
MS.gene028747.t1 MTR_8g038880 30.481 561 332 11 15 544 19 552 1.25e-70 237
MS.gene028747.t1 MTR_7g088820 31.373 459 286 10 107 542 6 458 9.52e-70 232
MS.gene028747.t1 MTR_2g005130 28.597 556 366 8 1 542 25 563 6.63e-69 233
MS.gene028747.t1 MTR_1g041885 28.088 502 336 8 39 525 5 496 1.97e-68 230
MS.gene028747.t1 MTR_4g033325 34.081 446 246 13 123 543 4 426 5.56e-68 226
MS.gene028747.t1 MTR_4g033325 34.081 446 246 13 123 543 30 452 1.06e-67 226
MS.gene028747.t1 MTR_3g100980 28.814 531 328 12 43 544 43 552 3.57e-67 227
MS.gene028747.t1 MTR_5g038380 27.210 577 368 13 2 542 14 574 5.16e-66 224
MS.gene028747.t1 MTR_7g098200 29.915 468 284 9 104 543 3 454 1.10e-65 221
MS.gene028747.t1 MTR_7g098150 28.733 442 295 6 2 434 19 449 3.81e-65 220
MS.gene028747.t1 MTR_2g017750 29.341 501 316 11 75 542 93 588 8.43e-65 222
MS.gene028747.t1 MTR_8g469310 27.434 565 367 13 9 542 19 571 1.16e-64 221
MS.gene028747.t1 MTR_4g123537 27.434 565 372 11 2 543 22 571 1.34e-63 219
MS.gene028747.t1 MTR_4g033385 32.658 444 250 11 127 543 32 453 6.58e-63 213
MS.gene028747.t1 MTR_7g111260 27.993 568 356 14 7 543 2 547 6.99e-63 216
MS.gene028747.t1 MTR_4g107670 26.541 584 366 14 2 543 10 572 2.58e-62 214
MS.gene028747.t1 MTR_3g100980 27.907 559 325 14 43 544 43 580 2.22e-61 213
MS.gene028747.t1 MTR_8g087780 26.445 571 389 9 1 542 6 574 2.71e-60 209
MS.gene028747.t1 MTR_8g087810 27.972 572 380 10 1 542 6 575 5.97e-60 208
MS.gene028747.t1 MTR_1g085090 26.642 548 367 10 14 543 17 547 2.88e-58 204
MS.gene028747.t1 MTR_7g006540 27.094 561 370 12 13 542 60 612 8.92e-57 201
MS.gene028747.t1 MTR_8g091265 70.992 131 33 2 285 410 3 133 2.03e-54 181
MS.gene028747.t1 MTR_7g098210 26.908 524 279 11 39 543 5 443 2.03e-48 174
MS.gene028747.t1 MTR_4g024930 26.690 562 359 14 2 540 22 553 4.64e-48 176
MS.gene028747.t1 MTR_7g051880 24.364 550 369 11 2 539 11 525 1.45e-43 162
MS.gene028747.t1 MTR_6g008690 24.399 541 335 13 39 540 30 535 6.91e-43 161
MS.gene028747.t1 MTR_7g051830 23.801 542 366 10 10 539 19 525 3.93e-42 158
MS.gene028747.t1 MTR_7g052600 24.704 506 338 9 44 539 53 525 7.13e-41 155
MS.gene028747.t1 MTR_1g009170 27.114 402 223 11 144 525 9 360 9.65e-35 135
MS.gene028747.t1 MTR_4g033310 28.391 317 192 7 244 543 190 488 3.83e-33 132
MS.gene028747.t1 MTR_4g033310 33.333 189 109 4 1 184 16 192 2.53e-17 85.1
MS.gene028747.t1 MTR_8g091275 63.889 72 25 1 192 262 1 72 9.23e-26 101
MS.gene028747.t1 MTR_8g091480 66.667 57 14 1 228 284 38 89 1.03e-15 80.9
MS.gene028747.t1 MTR_3g065350 32.258 155 96 4 326 474 1 152 1.38e-12 66.2
MS.gene028747.t1 MTR_7g064160 31.183 93 64 0 8 100 21 113 6.04e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028747.t1 AT3G45650 51.180 551 248 5 2 544 8 545 0.0 565
MS.gene028747.t1 AT3G45660 50.457 547 250 5 6 544 32 565 0.0 557
MS.gene028747.t1 AT3G45660 50.457 547 250 5 6 544 11 544 0.0 556
MS.gene028747.t1 AT3G45660 50.457 547 250 5 6 544 11 544 0.0 556
MS.gene028747.t1 AT3G45650 48.873 577 248 6 2 544 8 571 0.0 550
MS.gene028747.t1 AT3G45680 49.811 530 262 2 15 544 19 544 0.0 536
MS.gene028747.t1 AT3G45710 47.426 544 280 4 2 544 8 546 0.0 534
MS.gene028747.t1 AT3G45700 48.679 530 262 3 15 544 15 534 0.0 524
MS.gene028747.t1 AT3G45720 45.251 537 289 2 8 544 11 542 6.22e-171 495
MS.gene028747.t1 AT3G45690 45.455 539 247 9 7 544 9 501 6.76e-158 461
MS.gene028747.t1 AT1G69870 36.166 553 328 8 11 542 46 594 5.53e-112 346
MS.gene028747.t1 AT1G18880 36.049 577 320 11 4 544 5 568 1.55e-107 333
MS.gene028747.t1 AT3G47960 35.242 559 313 12 19 542 64 608 3.00e-101 319
MS.gene028747.t1 AT1G27080 33.151 549 347 7 8 542 6 548 1.38e-97 308
MS.gene028747.t1 AT5G62680 34.234 555 326 10 19 542 46 592 2.89e-97 308
MS.gene028747.t1 AT2G26690 34.791 549 330 10 10 540 18 556 2.06e-96 305
MS.gene028747.t1 AT1G62200 33.152 552 343 9 2 535 38 581 1.93e-95 302
MS.gene028747.t1 AT3G16180 32.793 555 338 11 12 539 19 565 6.35e-94 298
MS.gene028747.t1 AT1G52190 32.566 565 341 12 7 539 10 566 8.33e-94 298
MS.gene028747.t1 AT5G01180 31.439 563 358 9 2 544 11 565 1.02e-93 297
MS.gene028747.t1 AT5G01180 31.439 563 358 9 2 544 11 565 1.02e-93 297
MS.gene028747.t1 AT5G01180 31.439 563 358 9 2 544 11 565 1.02e-93 297
MS.gene028747.t1 AT3G54140 31.194 561 359 9 2 542 10 563 1.79e-92 294
MS.gene028747.t1 AT3G54140 31.194 561 359 9 2 542 10 563 1.79e-92 294
MS.gene028747.t1 AT1G62200 32.069 580 341 11 2 535 38 610 6.60e-91 291
MS.gene028747.t1 AT1G62200 32.069 580 341 11 2 535 52 624 9.59e-91 291
MS.gene028747.t1 AT2G26690 34.652 531 319 10 28 540 3 523 3.16e-90 287
MS.gene028747.t1 AT1G27080 33.008 512 323 7 45 542 1 506 6.25e-90 286
MS.gene028747.t1 AT2G26690 35.000 520 310 10 39 540 2 511 6.81e-90 286
MS.gene028747.t1 AT1G68570 33.938 551 337 8 17 544 24 570 8.31e-89 285
MS.gene028747.t1 AT1G68570 34.216 529 321 8 39 544 16 540 1.77e-86 278
MS.gene028747.t1 AT2G02040 29.610 564 369 8 2 544 27 583 1.18e-82 269
MS.gene028747.t1 AT5G28470 30.811 555 359 11 8 543 9 557 1.42e-82 268
MS.gene028747.t1 AT3G54450 28.345 568 355 8 5 544 1 544 2.24e-82 267
MS.gene028747.t1 AT5G28470 30.018 553 364 9 8 543 9 555 4.02e-81 264
MS.gene028747.t1 AT1G69860 30.948 559 361 9 1 543 1 550 2.10e-79 259
MS.gene028747.t1 AT5G46040 30.018 543 349 7 2 523 13 545 2.36e-79 260
MS.gene028747.t1 AT3G21670 32.117 548 339 14 13 542 26 558 6.69e-78 256
MS.gene028747.t1 AT1G12110 31.475 556 353 9 10 543 21 570 7.28e-78 256
MS.gene028747.t1 AT2G02020 29.682 566 327 10 2 544 28 545 1.36e-77 254
MS.gene028747.t1 AT1G32450 30.373 563 365 10 2 540 23 582 1.34e-74 248
MS.gene028747.t1 AT3G53960 29.656 553 355 11 14 544 35 575 2.69e-74 247
MS.gene028747.t1 AT2G37900 29.264 557 370 9 1 544 23 568 8.84e-74 245
MS.gene028747.t1 AT2G40460 29.947 571 347 13 2 543 10 556 1.04e-72 243
MS.gene028747.t1 AT1G27040 28.649 555 360 9 9 541 16 556 1.54e-71 239
MS.gene028747.t1 AT1G27040 28.980 559 353 11 9 541 20 560 1.69e-71 239
MS.gene028747.t1 AT5G46050 28.571 539 352 9 2 518 13 540 1.95e-71 239
MS.gene028747.t1 AT4G21680 29.930 568 361 13 2 541 14 572 3.04e-71 239
MS.gene028747.t1 AT1G27040 29.848 526 325 11 42 541 21 528 1.16e-70 236
MS.gene028747.t1 AT5G19640 28.000 550 373 8 2 540 45 582 3.66e-70 236
MS.gene028747.t1 AT1G33440 30.331 544 353 9 15 542 37 570 1.89e-69 234
MS.gene028747.t1 AT2G37900 29.600 500 321 10 65 544 1 489 1.37e-67 227
MS.gene028747.t1 AT1G69850 30.335 567 351 13 14 544 23 581 1.59e-67 229
MS.gene028747.t1 AT1G72125 31.194 561 327 14 14 544 27 558 2.30e-67 228
MS.gene028747.t1 AT1G22550 29.749 558 341 11 14 544 28 561 3.89e-67 227
MS.gene028747.t1 AT1G22540 31.418 557 326 11 9 539 23 549 4.07e-67 227
MS.gene028747.t1 AT1G22570 30.726 537 316 12 14 520 28 538 4.41e-67 227
MS.gene028747.t1 AT1G59740 28.650 548 359 10 10 536 35 571 5.34e-66 225
MS.gene028747.t1 AT1G72130 30.364 550 327 11 11 541 20 532 2.49e-65 222
MS.gene028747.t1 AT5G46050 30.206 437 274 7 103 518 2 428 7.29e-64 216
MS.gene028747.t1 AT1G72140 27.936 562 333 12 14 543 32 553 9.96e-64 218
MS.gene028747.t1 AT1G22570 30.664 512 299 12 39 520 16 501 6.35e-63 215
MS.gene028747.t1 AT1G72120 29.570 558 336 10 14 544 27 554 2.89e-61 211
MS.gene028747.t1 AT1G72130 30.716 433 255 9 128 541 8 414 7.00e-56 193
MS.gene028747.t1 AT1G72130 30.716 433 255 9 128 541 8 414 7.00e-56 193
MS.gene028747.t1 AT3G25260 27.290 513 312 7 43 539 48 515 2.59e-55 194
MS.gene028747.t1 AT5G62730 26.244 583 351 12 2 543 42 586 5.49e-54 192
MS.gene028747.t1 AT5G13400 26.297 559 375 11 15 544 63 613 5.68e-54 193
MS.gene028747.t1 AT5G62730 27.122 542 316 12 43 543 24 527 1.41e-53 190
MS.gene028747.t1 AT5G14940 26.703 543 324 13 39 540 30 539 3.30e-52 187
MS.gene028747.t1 AT5G11570 27.425 536 293 13 22 539 19 476 2.46e-48 175
MS.gene028747.t1 AT3G25280 24.902 510 334 9 43 539 48 521 3.11e-44 164
MS.gene028747.t1 AT3G01350 24.864 551 325 10 39 535 30 545 9.33e-43 161
MS.gene028747.t1 AT2G02020 30.303 264 176 2 2 260 28 288 5.45e-34 135
MS.gene028747.t1 AT2G02020 33.486 218 122 7 345 544 312 524 1.58e-25 110
MS.gene028747.t1 AT2G38100 25.524 525 322 15 44 541 2 484 7.06e-30 123
MS.gene028747.t1 AT2G38100 25.524 525 322 15 44 541 18 500 1.41e-29 122
MS.gene028747.t1 AT2G38100 25.524 525 322 15 44 541 24 506 1.72e-29 122

Find 108 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTACATTGAGGATAATT+TGG 0.105611 2.3:+8222340 MS.gene028747:CDS
GATAATTTGGGTTGGGCTTT+GGG 0.135390 2.3:+8222353 MS.gene028747:CDS
CGGAGGAATTGTGGGAAATT+TGG 0.175787 2.3:+8221743 MS.gene028747:CDS
TTGGGTTGGGCTTTGGGGTT+TGG 0.178493 2.3:+8222359 MS.gene028747:CDS
ATCGTTGCTGATTCTTTCTT+TGG 0.186929 2.3:+8221867 MS.gene028747:CDS
TTCACATTCTATGTTGCTTC+TGG 0.199343 2.3:+8222299 MS.gene028747:CDS
GGATAATTTGGGTTGGGCTT+TGG 0.200907 2.3:+8222352 MS.gene028747:CDS
TTCTTCTTGTGTTGCTTTGC+TGG 0.209226 2.3:+8221911 MS.gene028747:CDS
TTCTTCTGGTCATGATGTTT+TGG 0.260860 2.3:+8222556 MS.gene028747:CDS
CCAGGTTGGCATAAGATTAC+TGG 0.280111 2.3:+8223991 MS.gene028747:CDS
GCTACAAGGAAGTGCAGTTT+TGG 0.285342 2.3:+8222454 MS.gene028747:CDS
ATAAGTTTCCCTTTCTTCAT+TGG 0.290451 2.3:+8221254 MS.gene028747:CDS
GTCCTAATATCAATTGGTTT+TGG 0.302104 2.3:+8222191 MS.gene028747:CDS
CAATGATTTCAATGATTATA+GGG 0.302871 2.3:+8224256 MS.gene028747:CDS
TAATTAGAATCCTACCTCTT+TGG 0.304616 2.3:+8223791 MS.gene028747:CDS
GATTACTATGGTAGTTCTTC+TGG 0.306973 2.3:+8222542 MS.gene028747:CDS
GCAATGATTTCAATGATTAT+AGG 0.313595 2.3:+8224255 MS.gene028747:CDS
GTCAAGAAATGTGAGGAAAA+TGG 0.324649 2.3:-8223956 None:intergenic
ATTTACATTGAGGATAATTT+GGG 0.326688 2.3:+8222341 MS.gene028747:CDS
CAATTAGTGTTGGTTGGTAT+TGG 0.327167 2.3:+8224156 MS.gene028747:CDS
TTAGTCATGGATCGTTCTTT+AGG 0.329015 2.3:+8223877 MS.gene028747:CDS
CACCAAAACCAATTGATATT+AGG 0.344369 2.3:-8222193 None:intergenic
TACTGGATGTTAGTAGTGTT+TGG 0.345072 2.3:+8224375 MS.gene028747:CDS
ATGTTTCTATGTCTGTGTTA+TGG 0.348978 2.3:+8224124 MS.gene028747:CDS
TTGCCATGATTTATTTCATC+AGG 0.374654 2.3:-8224339 None:intergenic
GGTTAAATAGGTTTGGTAGC+AGG 0.380636 2.3:+8221705 MS.gene028747:intron
TAACACCGGGAAAAGGATTA+AGG 0.383763 2.3:+8222597 MS.gene028747:CDS
GGACATGTGTTGACTGTTCT+TGG 0.383903 2.3:+8224048 MS.gene028747:CDS
GAAGTACAGCCAAGCTACTT+TGG 0.393641 2.3:-8223849 None:intergenic
CATTGAGGATAATTTGGGTT+GGG 0.396126 2.3:+8222346 MS.gene028747:CDS
AAGCTACTTTGGATTGCTAT+AGG 0.411822 2.3:-8223838 None:intergenic
AGCATAGTCCTAATATCAAT+TGG 0.421222 2.3:+8222185 MS.gene028747:CDS
CTTGACAGGGTGCTATTGCC+AGG 0.421420 2.3:+8223973 MS.gene028747:CDS
ATAATTTGGGTTGGGCTTTG+GGG 0.424970 2.3:+8222354 MS.gene028747:CDS
GCTTCTGGAGCTGCATTCAC+TGG 0.428108 2.3:+8222314 MS.gene028747:CDS
GGATTGCTATAGGAGTTGAT+AGG 0.442808 2.3:-8223828 None:intergenic
CCTATGCCGCTTCAACGAAT+AGG 0.444488 2.3:+8224021 MS.gene028747:CDS
GAGAGAGACCAATGAAGAAA+GGG 0.452539 2.3:-8221262 None:intergenic
TAATAGAATGTAACTTGTCC+TGG 0.454723 2.3:-8224195 None:intergenic
AGAGAGAGACCAATGAAGAA+AGG 0.466641 2.3:-8221263 None:intergenic
TCCAGAGTAGAGGATTACTA+TGG 0.467175 2.3:+8222530 MS.gene028747:CDS
TTATATATAGAACTGTGTAT+TGG 0.469265 2.3:-8222163 None:intergenic
CACTGGAATTATTTACATTG+AGG 0.469878 2.3:+8222331 MS.gene028747:CDS
GTTAAATAGGTTTGGTAGCA+GGG 0.471134 2.3:+8221706 MS.gene028747:intron
ATTACATGCAAGCCACCTAC+TGG 0.472106 2.3:+8222137 MS.gene028747:CDS
AATCAGTACTCCTACGAACT+TGG 0.476238 2.3:-8224311 None:intergenic
CCTATTCGTTGAAGCGGCAT+AGG 0.476519 2.3:-8224021 None:intergenic
TTTCCACAATTAGTGTTGGT+TGG 0.482453 2.3:+8224150 MS.gene028747:CDS
CCAGTAATCTTATGCCAACC+TGG 0.485407 2.3:-8223991 None:intergenic
CCTCCGCTAACACCGGGAAA+AGG 0.486201 2.3:+8222590 MS.gene028747:CDS
CGTTTCACTGCAGCATCACT+AGG 0.490573 2.3:+8222221 MS.gene028747:CDS
ACAGGGTGCTATTGCCAGGT+TGG 0.495314 2.3:+8223977 MS.gene028747:CDS
CTTGGAAGCGGAGGAATTGT+GGG 0.495498 2.3:+8221735 MS.gene028747:CDS
TCAAGAAATGTGAGGAAAAT+GGG 0.497572 2.3:-8223955 None:intergenic
ATGACAGAAACAGAACTAGC+TGG 0.499461 2.3:-8223916 None:intergenic
ACTTGGAAGCGGAGGAATTG+TGG 0.504054 2.3:+8221734 MS.gene028747:CDS
TACACTCAGATGGCTCAGTT+AGG 0.509635 2.3:+8223716 MS.gene028747:CDS
AACAATTTCCACAATCACTT+AGG 0.511803 2.3:+8224220 MS.gene028747:CDS
TTGGTAGCAGGGTCGTCACT+TGG 0.515790 2.3:+8221717 MS.gene028747:CDS
TTGTTGCATCTGTTCGTAAG+TGG 0.518784 2.3:+8222492 MS.gene028747:CDS
TGTGTTGACTGTTCTTGGCA+TGG 0.519665 2.3:+8224053 MS.gene028747:CDS
AAGCATCAATCTATTTCCAC+TGG 0.527700 2.3:+8221836 MS.gene028747:CDS
TTACCTGATGAAATAAATCA+TGG 0.531630 2.3:+8224336 MS.gene028747:CDS
GTTGTTTCCACAATTAGTGT+TGG 0.534629 2.3:+8224146 MS.gene028747:CDS
ACATTGAGGATAATTTGGGT+TGG 0.535748 2.3:+8222345 MS.gene028747:CDS
ATACCAACCAACACTAATTG+TGG 0.537554 2.3:-8224153 None:intergenic
CAGATGAGAGCAAGAGTGGC+GGG 0.541273 2.3:+8221228 MS.gene028747:CDS
GCAAGGTTGATAATGTGTAC+TGG 0.547549 2.3:+8224358 MS.gene028747:CDS
TTTCCTCACATTTCTTGACA+GGG 0.548202 2.3:+8223960 MS.gene028747:CDS
TATAGCAATCCAAAGTAGCT+TGG 0.554810 2.3:+8223840 MS.gene028747:CDS
AAGTTCGTAGGAGTACTGAT+TGG 0.558833 2.3:+8224313 MS.gene028747:CDS
ACCATAGTAATCCTCTACTC+TGG 0.561531 2.3:-8222531 None:intergenic
GAAACAGATGAGAGCAAGAG+TGG 0.566534 2.3:+8221224 MS.gene028747:CDS
AGTGCTGCCTCCGCTAACAC+CGG 0.566712 2.3:+8222583 MS.gene028747:CDS
TGGATGTTAGTAGTGTTTGG+AGG 0.575496 2.3:+8224378 MS.gene028747:CDS
GCAGGGTCGTCACTTGGAAG+CGG 0.575760 2.3:+8221723 MS.gene028747:CDS
GAATCATTGCTACATGGATG+AGG 0.577520 2.3:-8222110 None:intergenic
TATCGGGCAGAAAAGCTACA+AGG 0.579586 2.3:+8222440 MS.gene028747:CDS
GTGCTGCCTCCGCTAACACC+GGG 0.585063 2.3:+8222584 MS.gene028747:CDS
GCAACGATTGCGGCAACCAG+TGG 0.585741 2.3:-8221852 None:intergenic
TAACTGAGCCATCTGAGTGT+AGG 0.589021 2.3:-8223714 None:intergenic
TGACAGAAACAGAACTAGCT+GGG 0.591074 2.3:-8223915 None:intergenic
TGCAAGTGTGCAACAATGGA+TGG 0.601310 2.3:+8221179 None:intergenic
ACAGATGAGAGCAAGAGTGG+CGG 0.602237 2.3:+8221227 MS.gene028747:CDS
TGATGAAATAAATCATGGCA+AGG 0.602512 2.3:+8224341 MS.gene028747:CDS
CCTACTCCTATTCGTTGAAG+CGG 0.605706 2.3:-8224027 None:intergenic
CTTTAATCGACCAAGTTCGT+AGG 0.606772 2.3:+8224301 MS.gene028747:CDS
GAAAGAATCAGCAACGATTG+CGG 0.609321 2.3:-8221862 None:intergenic
TAAGCTCTCATCCAGAGTAG+AGG 0.611738 2.3:+8222520 MS.gene028747:CDS
TTTGACAAACTAGAACATCA+AGG 0.611836 2.3:+8222254 MS.gene028747:CDS
CCGCTTCAACGAATAGGAGT+AGG 0.614584 2.3:+8224027 MS.gene028747:CDS
TGTACTTCAAGCTTTAGTCA+TGG 0.614823 2.3:+8223864 MS.gene028747:CDS
GGGTCGTCACTTGGAAGCGG+AGG 0.621705 2.3:+8221726 MS.gene028747:CDS
GCTGTGCACACTTCAACAAG+TGG 0.625265 2.3:+8223753 MS.gene028747:CDS
GATGCAGACCTACACTCAGA+TGG 0.626629 2.3:+8223706 MS.gene028747:CDS
GCTCAGTTAGGAAATCATCA+TGG 0.632715 2.3:+8223728 MS.gene028747:CDS
ATGAATGAATCATTGCTACA+TGG 0.633109 2.3:-8222116 None:intergenic
GTGTATTGGATTCCAGTAGG+TGG 0.634548 2.3:-8222149 None:intergenic
ACTGTGTATTGGATTCCAGT+AGG 0.641176 2.3:-8222152 None:intergenic
AATATACTTGAAGTCCAAAG+AGG 0.641505 2.3:-8223805 None:intergenic
GGGGTTTGGAATTTGTGTCG+TGG 0.643071 2.3:+8222373 MS.gene028747:CDS
TACTTGAAGTCCAAAGAGGT+AGG 0.655913 2.3:-8223801 None:intergenic
AAGAGACTCAAATTAGCACA+TGG 0.673591 2.3:+8224099 MS.gene028747:CDS
ATGAGAGCAAGAGTGGCGGG+TGG 0.681677 2.3:+8221231 MS.gene028747:CDS
GATGTGCTCCTAAGTGATTG+TGG 0.690361 2.3:-8224228 None:intergenic
CATCAGTTACTAGAGCTGCA+CGG 0.693655 2.3:-8223687 None:intergenic
GCACCCTGTCAAGAAATGTG+AGG 0.706666 2.3:-8223963 None:intergenic
CAGTTAGGAAATCATCATGG+AGG 0.743788 2.3:+8223731 MS.gene028747:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTAATTTTTAAAAAAAG+TGG - chr2.3:8222636-8222655 None:intergenic 10.0%
!! ATCTATATATATGAAAATTC+AGG + chr2.3:8223656-8223675 MS.gene028747:intron 15.0%
!!! ATGATCATATTTTATATTGT+TGG + chr2.3:8221684-8221703 MS.gene028747:intron 15.0%
!!! TTTTATATTGTTGGTTAAAT+AGG + chr2.3:8221693-8221712 MS.gene028747:intron 15.0%
!! AACTTCAAATTACTATATAG+AGG - chr2.3:8221340-8221359 None:intergenic 20.0%
!! ATAGAAAAGTTTGATATGTT+GGG + chr2.3:8221568-8221587 MS.gene028747:intron 20.0%
!! ATTTACATTGAGGATAATTT+GGG + chr2.3:8222341-8222360 MS.gene028747:CDS 20.0%
!! CAATGATTTCAATGATTATA+GGG + chr2.3:8224256-8224275 MS.gene028747:CDS 20.0%
!! TATAGAAAAGTTTGATATGT+TGG + chr2.3:8221567-8221586 MS.gene028747:intron 20.0%
!! TATTTACATTGAGGATAATT+TGG + chr2.3:8222340-8222359 MS.gene028747:CDS 20.0%
!! TTATATATAGAACTGTGTAT+TGG - chr2.3:8222166-8222185 None:intergenic 20.0%
!!! AATATGACTAACATAACTTT+TGG - chr2.3:8221388-8221407 None:intergenic 20.0%
!!! GTGCATACTTAATTTATTTT+GGG + chr2.3:8222867-8222886 MS.gene028747:intron 20.0%
! AAATATAAGCTAAGTGATAG+AGG - chr2.3:8223402-8223421 None:intergenic 25.0%
! ACTTAATCAACAAGTAGATA+AGG + chr2.3:8223300-8223319 MS.gene028747:intron 25.0%
! ATGTTAGTCATATTCGAATT+TGG + chr2.3:8221394-8221413 MS.gene028747:intron 25.0%
! CTACTACAACAGAAATATTA+TGG + chr2.3:8222972-8222991 MS.gene028747:intron 25.0%
! CTATCACTTAGCTTATATTT+AGG + chr2.3:8223402-8223421 MS.gene028747:intron 25.0%
! GCAATGATTTCAATGATTAT+AGG + chr2.3:8224255-8224274 MS.gene028747:CDS 25.0%
! TAAAAAAAGTGGTTAGTACT+TGG - chr2.3:8222625-8222644 None:intergenic 25.0%
! TAGAAAAGTTTGATATGTTG+GGG + chr2.3:8221569-8221588 MS.gene028747:intron 25.0%
! TATATTAAGTTATTGAGCTC+AGG - chr2.3:8221488-8221507 None:intergenic 25.0%
! TGTTAGTCATATTCGAATTT+GGG + chr2.3:8221395-8221414 MS.gene028747:intron 25.0%
! TTACCTGATGAAATAAATCA+TGG + chr2.3:8224336-8224355 MS.gene028747:CDS 25.0%
! TTGATGAGTTAAAAGATGAA+AGG - chr2.3:8221295-8221314 None:intergenic 25.0%
! TTTATCACATCAATCAAAGT+AGG + chr2.3:8221978-8221997 MS.gene028747:intron 25.0%
!! ATAGCGTAGAATTCTTTTTA+AGG - chr2.3:8222735-8222754 None:intergenic 25.0%
!! CTCATCAAAATCATTTTGTT+TGG + chr2.3:8221307-8221326 MS.gene028747:intron 25.0%
!! GGTGCATACTTAATTTATTT+TGG + chr2.3:8222866-8222885 MS.gene028747:intron 25.0%
!! TATTGTTGGTTAAATAGGTT+TGG + chr2.3:8221698-8221717 MS.gene028747:intron 25.0%
!!! ATCAAGGAATATTTTTCAAC+TGG + chr2.3:8222270-8222289 MS.gene028747:CDS 25.0%
!!! TTATTTTGTGAAATCCATGT+GGG + chr2.3:8222657-8222676 MS.gene028747:intron 25.0%
AACAATTTCCACAATCACTT+AGG + chr2.3:8224220-8224239 MS.gene028747:CDS 30.0%
AATATACTTGAAGTCCAAAG+AGG - chr2.3:8223808-8223827 None:intergenic 30.0%
ACCATCTCATATGTACTTAT+GGG - chr2.3:8221540-8221559 None:intergenic 30.0%
AGAAAAGTTTGATATGTTGG+GGG + chr2.3:8221570-8221589 MS.gene028747:intron 30.0%
AGCATAGTCCTAATATCAAT+TGG + chr2.3:8222185-8222204 MS.gene028747:CDS 30.0%
ATAAATTAAGTATGCACCAG+TGG - chr2.3:8222864-8222883 None:intergenic 30.0%
ATAAGTTTCCCTTTCTTCAT+TGG + chr2.3:8221254-8221273 MS.gene028747:CDS 30.0%
ATGAATGAATCATTGCTACA+TGG - chr2.3:8222119-8222138 None:intergenic 30.0%
ATGTTGTCTGAAAATATGGT+TGG - chr2.3:8223040-8223059 None:intergenic 30.0%
CACCAAAACCAATTGATATT+AGG - chr2.3:8222196-8222215 None:intergenic 30.0%
CACTGGAATTATTTACATTG+AGG + chr2.3:8222331-8222350 MS.gene028747:CDS 30.0%
CAGACGAATAAGTGTATATT+CGG - chr2.3:8222005-8222024 None:intergenic 30.0%
CGGTAAATGACAAATTGTTT+GGG - chr2.3:8221425-8221444 None:intergenic 30.0%
CTATATGTTTCATCCTAGAA+TGG - chr2.3:8223096-8223115 None:intergenic 30.0%
CTTAAGTAATTGATGAACTC+CGG - chr2.3:8221445-8221464 None:intergenic 30.0%
GTGAATCTCATTACTAAGTA+GGG - chr2.3:8223533-8223552 None:intergenic 30.0%
GTTAGTCATATTCGAATTTG+GGG + chr2.3:8221396-8221415 MS.gene028747:intron 30.0%
TAATTAGAATCCTACCTCTT+TGG + chr2.3:8223791-8223810 MS.gene028747:CDS 30.0%
TACCATCTCATATGTACTTA+TGG - chr2.3:8221541-8221560 None:intergenic 30.0%
TATAATGCGATGTGTATAGA+AGG - chr2.3:8223504-8223523 None:intergenic 30.0%
TATTGTGAATAGCATATCAG+AGG + chr2.3:8223374-8223393 MS.gene028747:intron 30.0%
TCAAGAAATGTGAGGAAAAT+GGG - chr2.3:8223958-8223977 None:intergenic 30.0%
TGATGAAATAAATCATGGCA+AGG + chr2.3:8224341-8224360 MS.gene028747:CDS 30.0%
TGTGAATCTCATTACTAAGT+AGG - chr2.3:8223534-8223553 None:intergenic 30.0%
TTGCCATGATTTATTTCATC+AGG - chr2.3:8224342-8224361 None:intergenic 30.0%
TTTGACAAACTAGAACATCA+AGG + chr2.3:8222254-8222273 MS.gene028747:CDS 30.0%
TTTGAGAAAATGATGTCTAG+TGG - chr2.3:8223227-8223246 None:intergenic 30.0%
! ACCATATTTTCAGACAACAT+TGG + chr2.3:8223040-8223059 MS.gene028747:intron 30.0%
! ATGTTTCTATGTCTGTGTTA+TGG + chr2.3:8224124-8224143 MS.gene028747:CDS 30.0%
! CATTTTCTCAAAGACAAGAT+TGG + chr2.3:8223235-8223254 MS.gene028747:intron 30.0%
! CCAAACAATTTGTCATTTAC+CGG + chr2.3:8221423-8221442 MS.gene028747:intron 30.0%
! TAATAGAATGTAACTTGTCC+TGG - chr2.3:8224198-8224217 None:intergenic 30.0%
! TCAACGCTTACTCTTTTATT+TGG - chr2.3:8223566-8223585 None:intergenic 30.0%
!! AACTAGCTGGGATTTTAAAA+TGG - chr2.3:8223906-8223925 None:intergenic 30.0%
!! GTCCTAATATCAATTGGTTT+TGG + chr2.3:8222191-8222210 MS.gene028747:CDS 30.0%
!! GTTATTTTGTGAAATCCATG+TGG + chr2.3:8222656-8222675 MS.gene028747:intron 30.0%
!!! ACTAGCTGGGATTTTAAAAT+GGG - chr2.3:8223905-8223924 None:intergenic 30.0%
!!! CTAATATCAATTGGTTTTGG+TGG + chr2.3:8222194-8222213 MS.gene028747:CDS 30.0%
!!! TCTTTTTAAGGCTTGCATAT+GGG - chr2.3:8222723-8222742 None:intergenic 30.0%
!!! TGTTGGGTTATCGATTTTAT+CGG + chr2.3:8222423-8222442 MS.gene028747:CDS 30.0%
!!! TTCTTTTTAAGGCTTGCATA+TGG - chr2.3:8222724-8222743 None:intergenic 30.0%
AAGAGACTCAAATTAGCACA+TGG + chr2.3:8224099-8224118 MS.gene028747:CDS 35.0%
AAGCATCAATCTATTTCCAC+TGG + chr2.3:8221836-8221855 MS.gene028747:CDS 35.0%
ACAATTCCTTCCTATGTACA+AGG - chr2.3:8223347-8223366 None:intergenic 35.0%
ACATTGAGGATAATTTGGGT+TGG + chr2.3:8222345-8222364 MS.gene028747:CDS 35.0%
ACGAACGAAGTGATAATCTA+TGG - chr2.3:8223119-8223138 None:intergenic 35.0%
ATACCAACCAACACTAATTG+TGG - chr2.3:8224156-8224175 None:intergenic 35.0%
CATATTCTCCTTTCAATGCT+TGG - chr2.3:8223601-8223620 None:intergenic 35.0%
CATGACCAAGATATGACATT+AGG - chr2.3:8222893-8222912 None:intergenic 35.0%
CCGGTAAATGACAAATTGTT+TGG - chr2.3:8221426-8221445 None:intergenic 35.0%
CGAATATACACTTATTCGTC+TGG + chr2.3:8222003-8222022 MS.gene028747:intron 35.0%
CTCAAGTCAACTATAACACA+TGG + chr2.3:8222755-8222774 MS.gene028747:intron 35.0%
GATTACTATGGTAGTTCTTC+TGG + chr2.3:8222542-8222561 MS.gene028747:CDS 35.0%
GCCAATGTTGTCTGAAAATA+TGG - chr2.3:8223044-8223063 None:intergenic 35.0%
GTCAAGAAATGTGAGGAAAA+TGG - chr2.3:8223959-8223978 None:intergenic 35.0%
TACTGGATGTTAGTAGTGTT+TGG + chr2.3:8224375-8224394 MS.gene028747:CDS 35.0%
TATAGCAATCCAAAGTAGCT+TGG + chr2.3:8223840-8223859 MS.gene028747:CDS 35.0%
TCCCATAAGTACATATGAGA+TGG + chr2.3:8221536-8221555 MS.gene028747:intron 35.0%
TCCCTCAATAAAAGTCTCAT+TGG + chr2.3:8222794-8222813 MS.gene028747:intron 35.0%
TTAGTCATGGATCGTTCTTT+AGG + chr2.3:8223877-8223896 MS.gene028747:CDS 35.0%
TTCATCCTAGAATGGAAAAC+TGG - chr2.3:8223088-8223107 None:intergenic 35.0%
TTTACGCACTAAATGTTGAG+AGG - chr2.3:8221627-8221646 None:intergenic 35.0%
TTTCCTCACATTTCTTGACA+GGG + chr2.3:8223960-8223979 MS.gene028747:CDS 35.0%
! AAGCTACTTTGGATTGCTAT+AGG - chr2.3:8223841-8223860 None:intergenic 35.0%
! AGCCAATGAGACTTTTATTG+AGG - chr2.3:8222799-8222818 None:intergenic 35.0%
! CATTGAGGATAATTTGGGTT+GGG + chr2.3:8222346-8222365 MS.gene028747:CDS 35.0%
! CTAATCCAGTTTTCCATTCT+AGG + chr2.3:8223080-8223099 MS.gene028747:intron 35.0%
! GCCAATGAGACTTTTATTGA+GGG - chr2.3:8222798-8222817 None:intergenic 35.0%
! GTTAAATAGGTTTGGTAGCA+GGG + chr2.3:8221706-8221725 MS.gene028747:intron 35.0%
! GTTGTTTCCACAATTAGTGT+TGG + chr2.3:8224146-8224165 MS.gene028747:CDS 35.0%
! TGTACTTCAAGCTTTAGTCA+TGG + chr2.3:8223864-8223883 MS.gene028747:CDS 35.0%
! TTCACATTCTATGTTGCTTC+TGG + chr2.3:8222299-8222318 MS.gene028747:CDS 35.0%
! TTCTTCTGGTCATGATGTTT+TGG + chr2.3:8222556-8222575 MS.gene028747:CDS 35.0%
! TTTTAACCTTTGCACATGCA+GGG + chr2.3:8222044-8222063 MS.gene028747:intron 35.0%
! TTTTCCTCACATTTCTTGAC+AGG + chr2.3:8223959-8223978 MS.gene028747:CDS 35.0%
!! ATCGTTGCTGATTCTTTCTT+TGG + chr2.3:8221867-8221886 MS.gene028747:CDS 35.0%
!! ATTTTAACCTTTGCACATGC+AGG + chr2.3:8222043-8222062 MS.gene028747:intron 35.0%
!! CAATTAGTGTTGGTTGGTAT+TGG + chr2.3:8224156-8224175 MS.gene028747:CDS 35.0%
!! GAAAGTTTCCAAGCATTGAA+AGG + chr2.3:8223590-8223609 MS.gene028747:intron 35.0%
!! GGTGTGGTTATTTTCTTGTT+GGG + chr2.3:8222407-8222426 MS.gene028747:CDS 35.0%
!! TGGATTAGCACATAGATAAG+TGG - chr2.3:8223068-8223087 None:intergenic 35.0%
!! TGGTGTGGTTATTTTCTTGT+TGG + chr2.3:8222406-8222425 MS.gene028747:CDS 35.0%
!! TTTCCACAATTAGTGTTGGT+TGG + chr2.3:8224150-8224169 MS.gene028747:CDS 35.0%
!!! CTAGCTGGGATTTTAAAATG+GGG - chr2.3:8223904-8223923 None:intergenic 35.0%
!!! GTTGGGTTATCGATTTTATC+GGG + chr2.3:8222424-8222443 MS.gene028747:CDS 35.0%
AATCAGTACTCCTACGAACT+TGG - chr2.3:8224314-8224333 None:intergenic 40.0%
ACCATAGTAATCCTCTACTC+TGG - chr2.3:8222534-8222553 None:intergenic 40.0%
ACTGTGTATTGGATTCCAGT+AGG - chr2.3:8222155-8222174 None:intergenic 40.0%
AGAGAGAGACCAATGAAGAA+AGG - chr2.3:8221266-8221285 None:intergenic 40.0%
ATGACAGAAACAGAACTAGC+TGG - chr2.3:8223919-8223938 None:intergenic 40.0%
ATTCCTTCCTATGTACAAGG+AGG - chr2.3:8223344-8223363 None:intergenic 40.0%
CAACAGTTGCTTCAAGAACT+TGG + chr2.3:8222998-8223017 MS.gene028747:intron 40.0%
CAGTTAGGAAATCATCATGG+AGG + chr2.3:8223731-8223750 MS.gene028747:CDS 40.0%
CTTTAATCGACCAAGTTCGT+AGG + chr2.3:8224301-8224320 MS.gene028747:CDS 40.0%
GAAAGAATCAGCAACGATTG+CGG - chr2.3:8221865-8221884 None:intergenic 40.0%
GAATCATTGCTACATGGATG+AGG - chr2.3:8222113-8222132 None:intergenic 40.0%
GAGAGAGACCAATGAAGAAA+GGG - chr2.3:8221265-8221284 None:intergenic 40.0%
GCTAATAATGTGAACCCACA+TGG - chr2.3:8222674-8222693 None:intergenic 40.0%
GCTCAGTTAGGAAATCATCA+TGG + chr2.3:8223728-8223747 MS.gene028747:CDS 40.0%
TAACACCGGGAAAAGGATTA+AGG + chr2.3:8222597-8222616 MS.gene028747:CDS 40.0%
TACATTCGCACGATTGTCAA+CGG + chr2.3:8222925-8222944 MS.gene028747:intron 40.0%
TACTTGAAGTCCAAAGAGGT+AGG - chr2.3:8223804-8223823 None:intergenic 40.0%
TCATTCACCTCCTTGTACAT+AGG + chr2.3:8223334-8223353 MS.gene028747:intron 40.0%
TCCAGAGTAGAGGATTACTA+TGG + chr2.3:8222530-8222549 MS.gene028747:CDS 40.0%
TGACAGAAACAGAACTAGCT+GGG - chr2.3:8223918-8223937 None:intergenic 40.0%
TGGATGTTAGTAGTGTTTGG+AGG + chr2.3:8224378-8224397 MS.gene028747:CDS 40.0%
TTGGGCCTAATGTCATATCT+TGG + chr2.3:8222885-8222904 MS.gene028747:intron 40.0%
TTGTTGCATCTGTTCGTAAG+TGG + chr2.3:8222492-8222511 MS.gene028747:CDS 40.0%
! GAGACTTTTATTGAGGGACT+TGG - chr2.3:8222792-8222811 None:intergenic 40.0%
! GGAGAAGCTTTTCATTTTCC+AGG + chr2.3:8224177-8224196 MS.gene028747:CDS 40.0%
! GGATTGCTATAGGAGTTGAT+AGG - chr2.3:8223831-8223850 None:intergenic 40.0%
! GGTTAAATAGGTTTGGTAGC+AGG + chr2.3:8221705-8221724 MS.gene028747:intron 40.0%
! TGGCTTTTGTGATGCAGATT+GGG + chr2.3:8222814-8222833 MS.gene028747:intron 40.0%
! TGGTACCTTAATCCTTTTCC+CGG - chr2.3:8222605-8222624 None:intergenic 40.0%
!! AAGTTCGTAGGAGTACTGAT+TGG + chr2.3:8224313-8224332 MS.gene028747:CDS 40.0%
!! ATAATTTGGGTTGGGCTTTG+GGG + chr2.3:8222354-8222373 MS.gene028747:CDS 40.0%
!! GATAATTTGGGTTGGGCTTT+GGG + chr2.3:8222353-8222372 MS.gene028747:CDS 40.0%
!! GCAAGGTTGATAATGTGTAC+TGG + chr2.3:8224358-8224377 MS.gene028747:CDS 40.0%
!! GCTCTCATCTGTTTCTTTTG+AGG - chr2.3:8221219-8221238 None:intergenic 40.0%
!! TTCTTCTTGTGTTGCTTTGC+TGG + chr2.3:8221911-8221930 MS.gene028747:CDS 40.0%
!! TTGGCTTTTGTGATGCAGAT+TGG + chr2.3:8222813-8222832 MS.gene028747:intron 40.0%
!!! AGGAAGTGCAGTTTTGGATT+TGG + chr2.3:8222460-8222479 MS.gene028747:CDS 40.0%
!!! GGAAGTGCAGTTTTGGATTT+GGG + chr2.3:8222461-8222480 MS.gene028747:CDS 40.0%
AAGATACCTCCATCTTGAGG+GGG + chr2.3:8223266-8223285 MS.gene028747:intron 45.0%
ACGCACTAAATGTTGAGAGG+CGG - chr2.3:8221624-8221643 None:intergenic 45.0%
ACTTCAGATCGGAAATCCAC+TGG + chr2.3:8222845-8222864 MS.gene028747:intron 45.0%
ATTACATGCAAGCCACCTAC+TGG + chr2.3:8222137-8222156 MS.gene028747:CDS 45.0%
ATTGTTCCCTGCATGTGCAA+AGG - chr2.3:8222053-8222072 None:intergenic 45.0%
CATCAGTTACTAGAGCTGCA+CGG - chr2.3:8223690-8223709 None:intergenic 45.0%
CCAGTAATCTTATGCCAACC+TGG - chr2.3:8223994-8224013 None:intergenic 45.0%
CCTACTCCTATTCGTTGAAG+CGG - chr2.3:8224030-8224049 None:intergenic 45.0%
CGAAGATACCTCCATCTTGA+GGG + chr2.3:8223264-8223283 MS.gene028747:intron 45.0%
CGGAGGAATTGTGGGAAATT+TGG + chr2.3:8221743-8221762 MS.gene028747:CDS 45.0%
CTTGCATATGGGTCATTGTG+GGG - chr2.3:8222712-8222731 None:intergenic 45.0%
GAAACAGATGAGAGCAAGAG+TGG + chr2.3:8221224-8221243 MS.gene028747:CDS 45.0%
GAAGATACCTCCATCTTGAG+GGG + chr2.3:8223265-8223284 MS.gene028747:intron 45.0%
GAAGTACAGCCAAGCTACTT+TGG - chr2.3:8223852-8223871 None:intergenic 45.0%
GATGTGCTCCTAAGTGATTG+TGG - chr2.3:8224231-8224250 None:intergenic 45.0%
GCTTGCATATGGGTCATTGT+GGG - chr2.3:8222713-8222732 None:intergenic 45.0%
GTGTATTGGATTCCAGTAGG+TGG - chr2.3:8222152-8222171 None:intergenic 45.0%
GTTGACAATCGTGCGAATGT+AGG - chr2.3:8222926-8222945 None:intergenic 45.0%
TAACTGAGCCATCTGAGTGT+AGG - chr2.3:8223717-8223736 None:intergenic 45.0%
TAAGCTCTCATCCAGAGTAG+AGG + chr2.3:8222520-8222539 MS.gene028747:CDS 45.0%
TACACTCAGATGGCTCAGTT+AGG + chr2.3:8223716-8223735 MS.gene028747:CDS 45.0%
TATCGGGCAGAAAAGCTACA+AGG + chr2.3:8222440-8222459 MS.gene028747:CDS 45.0%
TCACCTCCTTGTACATAGGA+AGG + chr2.3:8223338-8223357 MS.gene028747:intron 45.0%
TCGAAGATACCTCCATCTTG+AGG + chr2.3:8223263-8223282 MS.gene028747:intron 45.0%
TCTAGTGGCAGATAGAGGTT+TGG - chr2.3:8223212-8223231 None:intergenic 45.0%
TGATGTCTAGTGGCAGATAG+AGG - chr2.3:8223217-8223236 None:intergenic 45.0%
TGGTGAGCAAATCAGCTAGT+TGG - chr2.3:8223192-8223211 None:intergenic 45.0%
TTGCATATGGGTCATTGTGG+GGG - chr2.3:8222711-8222730 None:intergenic 45.0%
! CCAGGTTGGCATAAGATTAC+TGG + chr2.3:8223991-8224010 MS.gene028747:CDS 45.0%
! TTTTGTGATGCAGATTGGGC+TGG + chr2.3:8222818-8222837 MS.gene028747:intron 45.0%
!! AATCCTTTTCCCGGTGTTAG+CGG - chr2.3:8222596-8222615 None:intergenic 45.0%
!! GCTACAAGGAAGTGCAGTTT+TGG + chr2.3:8222454-8222473 MS.gene028747:CDS 45.0%
!! GGACATGTGTTGACTGTTCT+TGG + chr2.3:8224048-8224067 MS.gene028747:CDS 45.0%
!! GGATAATTTGGGTTGGGCTT+TGG + chr2.3:8222352-8222371 MS.gene028747:CDS 45.0%
!! TCAGCTAGTTGGTGACTTGT+CGG - chr2.3:8223181-8223200 None:intergenic 45.0%
!! TGTGTTGACTGTTCTTGGCA+TGG + chr2.3:8224053-8224072 MS.gene028747:CDS 45.0%
!!! TGTGTCGTGGCTACTTTTGT+TGG + chr2.3:8222386-8222405 MS.gene028747:CDS 45.0%
ACAGATGAGAGCAAGAGTGG+CGG + chr2.3:8221227-8221246 MS.gene028747:CDS 50.0%
ACTTGGAAGCGGAGGAATTG+TGG + chr2.3:8221734-8221753 MS.gene028747:CDS 50.0%
CCGCTTCAACGAATAGGAGT+AGG + chr2.3:8224027-8224046 MS.gene028747:CDS 50.0%
CCTATTCGTTGAAGCGGCAT+AGG - chr2.3:8224024-8224043 None:intergenic 50.0%
CGCACTAAATGTTGAGAGGC+GGG - chr2.3:8221623-8221642 None:intergenic 50.0%
CGTTTCACTGCAGCATCACT+AGG + chr2.3:8222221-8222240 MS.gene028747:CDS 50.0%
CTTGGAAGCGGAGGAATTGT+GGG + chr2.3:8221735-8221754 MS.gene028747:CDS 50.0%
GATGCAGACCTACACTCAGA+TGG + chr2.3:8223706-8223725 MS.gene028747:CDS 50.0%
GCACCCTGTCAAGAAATGTG+AGG - chr2.3:8223966-8223985 None:intergenic 50.0%
GCACTAAATGTTGAGAGGCG+GGG - chr2.3:8221622-8221641 None:intergenic 50.0%
GCTGTGCACACTTCAACAAG+TGG + chr2.3:8223753-8223772 MS.gene028747:CDS 50.0%
GGCTTGCATATGGGTCATTG+TGG - chr2.3:8222714-8222733 None:intergenic 50.0%
GGGCTGGAGATACTTCAGAT+CGG + chr2.3:8222834-8222853 MS.gene028747:intron 50.0%
! CCTATGCCGCTTCAACGAAT+AGG + chr2.3:8224021-8224040 MS.gene028747:CDS 50.0%
! GGGGTTTGGAATTTGTGTCG+TGG + chr2.3:8222373-8222392 MS.gene028747:CDS 50.0%
!!! CGTGGCTACTTTTGTTGGTG+TGG + chr2.3:8222391-8222410 MS.gene028747:CDS 50.0%
CAGATGAGAGCAAGAGTGGC+GGG + chr2.3:8221228-8221247 MS.gene028747:CDS 55.0%
CTAAATGTTGAGAGGCGGGG+AGG - chr2.3:8221619-8221638 None:intergenic 55.0%
! TCCATCTTGAGGGGGCGTAT+CGG + chr2.3:8223274-8223293 MS.gene028747:intron 55.0%
! TTGGTAGCAGGGTCGTCACT+TGG + chr2.3:8221717-8221736 MS.gene028747:CDS 55.0%
!! ACAGGGTGCTATTGCCAGGT+TGG + chr2.3:8223977-8223996 MS.gene028747:CDS 55.0%
!! CTTGACAGGGTGCTATTGCC+AGG + chr2.3:8223973-8223992 MS.gene028747:CDS 55.0%
!! GCTTCTGGAGCTGCATTCAC+TGG + chr2.3:8222314-8222333 MS.gene028747:CDS 55.0%
!! TTGGGTTGGGCTTTGGGGTT+TGG + chr2.3:8222359-8222378 MS.gene028747:CDS 55.0%
AGTGCTGCCTCCGCTAACAC+CGG + chr2.3:8222583-8222602 MS.gene028747:CDS 60.0%
CCTCCGCTAACACCGGGAAA+AGG + chr2.3:8222590-8222609 MS.gene028747:CDS 60.0%
GATACGCCCCCTCAAGATGG+AGG - chr2.3:8223275-8223294 None:intergenic 60.0%
GCAACGATTGCGGCAACCAG+TGG - chr2.3:8221855-8221874 None:intergenic 60.0%
GCAGGGTCGTCACTTGGAAG+CGG + chr2.3:8221723-8221742 MS.gene028747:CDS 60.0%
TCCGATACGCCCCCTCAAGA+TGG - chr2.3:8223278-8223297 None:intergenic 60.0%
! ATGAGAGCAAGAGTGGCGGG+TGG + chr2.3:8221231-8221250 MS.gene028747:CDS 60.0%
!! CCTTTTCCCGGTGTTAGCGG+AGG - chr2.3:8222593-8222612 None:intergenic 60.0%
GGGTCGTCACTTGGAAGCGG+AGG + chr2.3:8221726-8221745 MS.gene028747:CDS 65.0%
GTGCTGCCTCCGCTAACACC+GGG + chr2.3:8222584-8222603 MS.gene028747:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 8221194 8224458 8221194 ID=MS.gene028747
chr2.3 mRNA 8221194 8224458 8221194 ID=MS.gene028747.t1;Parent=MS.gene028747
chr2.3 exon 8221194 8221275 8221194 ID=MS.gene028747.t1.exon1;Parent=MS.gene028747.t1
chr2.3 CDS 8221194 8221275 8221194 ID=cds.MS.gene028747.t1;Parent=MS.gene028747.t1
chr2.3 exon 8221715 8221932 8221715 ID=MS.gene028747.t1.exon2;Parent=MS.gene028747.t1
chr2.3 CDS 8221715 8221932 8221715 ID=cds.MS.gene028747.t1;Parent=MS.gene028747.t1
chr2.3 exon 8222065 8222618 8222065 ID=MS.gene028747.t1.exon3;Parent=MS.gene028747.t1
chr2.3 CDS 8222065 8222618 8222065 ID=cds.MS.gene028747.t1;Parent=MS.gene028747.t1
chr2.3 exon 8223678 8224458 8223678 ID=MS.gene028747.t1.exon4;Parent=MS.gene028747.t1
chr2.3 CDS 8223678 8224458 8223678 ID=cds.MS.gene028747.t1;Parent=MS.gene028747.t1
Gene Sequence

>MS.gene028747

ATGGATGGTAAGCTAGCAGCATCCTCAAAAGAAACAGATGAGAGCAAGAGTGGCGGGTGGATAAGTTTCCCTTTCTTCATTGGTCTCTCTCTCTTTTTCCTTTCATCTTTTAACTCATCAAAATCATTTTGTTTGGTTTTATTCCTCTATATAGTAATTTGAAGTTCAGACGACATGTAAGTAAAGTATGACCAAAAGTTATGTTAGTCATATTCGAATTTGGGGTTTCCCAAACAATTTGTCATTTACCGGAGTTCATCAATTACTTAAGCTTATAAAAGAAACTAATTACCTGAGCTCAATAACTTAATATACACACACGTAAAAAGCATGATCATATTGTCCCATAAGTACATATGAGATGGTAAAAAACTATAGAAAAGTTTGATATGTTGGGGGCGTGTGTTCGAATCTGCAACTTTCCTCCCCGCCTCTCAACATTTAGTGCGTAAATTTCGCTGCTAGTCTCATTGTAACAGAAAAAGAAAGCATGATCATATTTTATATTGTTGGTTAAATAGGTTTGGTAGCAGGGTCGTCACTTGGAAGCGGAGGAATTGTGGGAAATTTGGTTGTATATCTTATACAAGAATTCAATATAAAGAGCATCATTGCTGCTCAGATTGTAAACATTGTTATCAGAAGCATCAATCTATTTCCACTGGTTGCCGCAATCGTTGCTGATTCTTTCTTTGGCTCTTTCTCTGTTGCATTTGCTTCTTCTTGTGTTGCTTTGCTGGTAAGCTTCAACACTAAGCGAGAATTTTTTAATCATATTTCATATTTTATCACATCAATCAAAGTAGGACCGAATATACACTTATTCGTCTGGTAACAATTCTCTTTTAAATTTTAACCTTTGCACATGCAGGGAACAATTATTTTGTTTTTGACAGCAACGATCGATTTGTTAAAGCCTCATCCATGTAGCAATGATTCATTCATTACATGCAAGCCACCTACTGGAATCCAATACACAGTTCTATATATAAGCATAGTCCTAATATCAATTGGTTTTGGTGGTTCACGTTTCACTGCAGCATCACTAGGAGCAAATCAATTTGACAAACTAGAACATCAAGGAATATTTTTCAACTGGTACTTTTTCACATTCTATGTTGCTTCTGGAGCTGCATTCACTGGAATTATTTACATTGAGGATAATTTGGGTTGGGCTTTGGGGTTTGGAATTTGTGTCGTGGCTACTTTTGTTGGTGTGGTTATTTTCTTGTTGGGTTATCGATTTTATCGGGCAGAAAAGCTACAAGGAAGTGCAGTTTTGGATTTGGGACGTGTTTTTGTTGCATCTGTTCGTAAGTGGAAGTGTAAGCTCTCATCCAGAGTAGAGGATTACTATGGTAGTTCTTCTGGTCATGATGTTTTGGTTCAAGTGCTGCCTCCGCTAACACCGGGAAAAGGATTAAGGTACCAAGTACTAACCACTTTTTTTAAAAATTACTTAGTTATTTTGTGAAATCCATGTGGGTTCACATTATTAGCTCAAAACATGCAAGCCCCCACAATGACCCATATGCAAGCCTTAAAAAGAATTCTACGCTATCTCAAGTCAACTATAACACATGGACTTCATCTCACCAAGTCCCTCAATAAAAGTCTCATTGGCTTTTGTGATGCAGATTGGGCTGGAGATACTTCAGATCGGAAATCCACTGGTGCATACTTAATTTATTTTGGGCCTAATGTCATATCTTGGTCATGCAAAAAGCAACCTACATTCGCACGATTGTCAACGGAAGCTGAGTATCGCACAATTGCAACTACTACAACAGAAATATTATGGATTCAACAGTTGCTTCAAGAACTTGGAATTCAAATTACTGCTCCAACCATATTTTCAGACAACATTGGCGCCACTTATCTATGTGCTAATCCAGTTTTCCATTCTAGGATGAAACATATAGCCATAGATTATCACTTCGTTCGTGATCTTGTCATTGAAAAGAAGCTGCAAGTTTCACATGTTCCGACAAGTCACCAACTAGCTGATTTGCTCACCAAACCTCTATCTGCCACTAGACATCATTTTCTCAAAGACAAGATTGGAGTTCTCGAAGATACCTCCATCTTGAGGGGGCGTATCGGAGTACTTAATCAACAAGTAGATAAGGATTCATAGTCATCATTCACCTCCTTGTACATAGGAAGGAATTGTGCAACTGTATTGTGAATAGCATATCAGAGGCTCCTCTATCACTTAGCTTATATTTAGGAGTTAGTTGCTTATTAGTTTATATATATATACAACTGATGTACATCATATATTATTATTCAAATATACAGATTGTTCCTTCTATACACATCGCATTATAAATTTACCCTACTTAGTAATGAGATTCACATGATTTTTACCAAATAAAAGAGTAAGCGTTGAAAATGAAAGTTTCCAAGCATTGAAAGGAGAATATGCTTGTAAATTTCTGCTATATAGTAACAATGTGTTGATCTATATATATGAAAATTCAGGTTCTTCAACCGTGCAGCTCTAGTAACTGATGCAGACCTACACTCAGATGGCTCAGTTAGGAAATCATCATGGAGGCTGTGCACACTTCAACAAGTGGAAGATTTTAAAAAAATAATTAGAATCCTACCTCTTTGGACTTCAAGTATATTCCTATCAACTCCTATAGCAATCCAAAGTAGCTTGGCTGTACTTCAAGCTTTAGTCATGGATCGTTCTTTAGGACCCCATTTTAAAATCCCAGCTAGTTCTGTTTCTGTCATAGTCTTAATATCAGCACCCATTTTCCTCACATTTCTTGACAGGGTGCTATTGCCAGGTTGGCATAAGATTACTGGAAAAACGCCTATGCCGCTTCAACGAATAGGAGTAGGACATGTGTTGACTGTTCTTGGCATGGTTGTCTCTGCTCTTGTTGAATCAAAGAGACTCAAATTAGCACATGGACATGTTTCTATGTCTGTGTTATGGTTGTTTCCACAATTAGTGTTGGTTGGTATTGGAGAAGCTTTTCATTTTCCAGGACAAGTTACATTCTATTATCAACAATTTCCACAATCACTTAGGAGCACATCAACAGCAATGATTTCAATGATTATAGGGATTGCTTTTTACTTGAGCGCTGCTTTAATCGACCAAGTTCGTAGGAGTACTGATTGGTTACCTGATGAAATAAATCATGGCAAGGTTGATAATGTGTACTGGATGTTAGTAGTGTTTGGAGGTATCAACTTTGTGTATTACTTACTGTGCTCTATTTCTTACAAGTATGAAAATGTTTAA
Protein sequence

>MS.gene028747.t1

MDGKLAASSKETDESKSGGWISFPFFIGLVAGSSLGSGGIVGNLVVYLIQEFNIKSIIAAQIVNIVIRSINLFPLVAAIVADSFFGSFSVAFASSCVALLGTIILFLTATIDLLKPHPCSNDSFITCKPPTGIQYTVLYISIVLISIGFGGSRFTAASLGANQFDKLEHQGIFFNWYFFTFYVASGAAFTGIIYIEDNLGWALGFGICVVATFVGVVIFLLGYRFYRAEKLQGSAVLDLGRVFVASVRKWKCKLSSRVEDYYGSSSGHDVLVQVLPPLTPGKGLRFFNRAALVTDADLHSDGSVRKSSWRLCTLQQVEDFKKIIRILPLWTSSIFLSTPIAIQSSLAVLQALVMDRSLGPHFKIPASSVSVIVLISAPIFLTFLDRVLLPGWHKITGKTPMPLQRIGVGHVLTVLGMVVSALVESKRLKLAHGHVSMSVLWLFPQLVLVGIGEAFHFPGQVTFYYQQFPQSLRSTSTAMISMIIGIAFYLSAALIDQVRRSTDWLPDEINHGKVDNVYWMLVVFGGINFVYYLLCSISYKYENV