AlfalfaGEDB | MS.gene93924

M. sativa cultivar XinJiangDaYe / MS.gene93924

KEGG: K14638
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0022857 GO:0042886 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0110165
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93924.t1	RHN59575.1	94.6	557	30	0	1	557	1	557	5.20E-305	1056.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93924.t1	Q0WP01	63.5	554	190	2	10	556	9	557	1.6e-201	703.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93924.t1	A0A396I7E7	94.6	557	30	0	1	557	1	557	3.8e-305	1056.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049259	MS.gene93924	0.801492	8.78E-49	-1.69E-46
MS.gene049611	MS.gene93924	0.838206	3.30E-57	-1.69E-46
MS.gene049634	MS.gene93924	0.827565	1.46E-54	-1.69E-46
MS.gene050165	MS.gene93924	-0.801387	9.22E-49	-1.69E-46
MS.gene050333	MS.gene93924	-0.803481	3.42E-49	-1.69E-46
MS.gene050381	MS.gene93924	0.823027	1.73E-53	-1.69E-46
MS.gene050444	MS.gene93924	-0.801367	9.31E-49	-1.69E-46
MS.gene050496	MS.gene93924	-0.816427	5.56E-52	-1.69E-46
MS.gene050504	MS.gene93924	-0.822611	2.16E-53	-1.69E-46
MS.gene050612	MS.gene93924	-0.829734	4.36E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00573	MS.gene93924	PPI
MS.gene015450	MS.gene93924	PPI
MS.gene021879	MS.gene93924	PPI
MS.gene023088	MS.gene93924	PPI
MS.gene028748	MS.gene93924	PPI
MS.gene033172	MS.gene93924	PPI
MS.gene034047	MS.gene93924	PPI
MS.gene034782	MS.gene93924	PPI
MS.gene037668	MS.gene93924	PPI
MS.gene042632	MS.gene93924	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene93924.t1	MTR_4g033315	90.664	557	52	0	1	557	1	557	1023
MS.gene93924.t1	MTR_4g033310	90.664	557	52	0	1	557	1	557	1023
MS.gene93924.t1	MTR_4g033330	94.934	533	27	0	1	533	1	533	1009
MS.gene93924.t1	MTR_0294s0020	87.792	557	66	1	1	557	1	555	981
MS.gene93924.t1	MTR_4g033325	86.559	558	71	2	1	557	1	555	979
MS.gene93924.t1	MTR_4g033395	85.341	498	71	2	1	496	1	498	880
MS.gene93924.t1	MTR_4g033375	85.141	498	72	2	1	496	1	498	872
MS.gene93924.t1	MTR_4g033325	86.005	443	58	2	116	557	18	457	789
MS.gene93924.t1	MTR_4g033385	84.650	443	67	1	116	557	16	458	787
MS.gene93924.t1	MTR_4g033325	85.714	434	58	2	125	557	1	431	772

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93924.t1	AT1G22540	63.538	554	190	2	10	556	9	557	0.0	688
MS.gene93924.t1	AT1G72125	57.603	559	228	6	1	552	1	557	0.0	624
MS.gene93924.t1	AT1G72120	57.679	560	222	8	1	552	1	553	0.0	613
MS.gene93924.t1	AT1G72140	55.818	550	213	5	16	551	19	552	0.0	605
MS.gene93924.t1	AT1G22550	55.245	572	222	7	1	552	3	560	0.0	601
MS.gene93924.t1	AT1G22570	55.596	554	222	6	16	552	15	561	0.0	584
MS.gene93924.t1	AT1G22570	55.303	528	212	6	42	552	4	524	0.0	551
MS.gene93924.t1	AT1G72130	52.820	532	229	6	29	555	23	537	0.0	532
MS.gene93924.t1	AT3G54450	44.015	543	274	7	29	551	10	542	2.62e-168	489
MS.gene93924.t1	AT2G02040	40.559	572	312	9	1	548	11	578	4.59e-150	443

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Find 120 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTGTTCAAGCTTT+CGG	0.280299	4.3:-66824807	MS.gene93924:CDS
AACCTTGTGTTCAAGCTTTC+GGG	0.149446	4.3:-66824806	MS.gene93924:CDS
AACTTGATATCATATCTAAC+AGG	0.448274	4.3:-66826032	MS.gene93924:CDS
AACTTGTAGCCTTAGTGAGG+TGG	0.589145	4.3:-66823906	MS.gene93924:CDS
AAGAAGCTAAGGCTGTTCTA+AGG	0.485876	4.3:-66823883	MS.gene93924:CDS
AAGAATGTCAATATTTGGTC+CGG	0.487098	4.3:-66825978	MS.gene93924:CDS
AAGAGTCCCTTTCTTAGAAT+TGG	0.315382	4.3:-66824546	MS.gene93924:CDS
AAGCACCTAAGAGAGGAAGG+AGG	0.605702	4.3:+66825946	None:intergenic
AAGGCACTGCTAACACCAAA+GGG	0.549823	4.3:-66823944	MS.gene93924:CDS
AATAAGATTACTTGTGACTG+AGG	0.611966	4.3:+66824873	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATGTCAATATTTGGTC+CGG	-	chr4.3:66823741-66823760	MS.gene93924:CDS	30.0%
AATAAGATTACTTGTGACTG+AGG	+	chr4.3:66824849-66824868	None:intergenic	30.0%
ACAGTGTTAAGATATGATGA+TGG	+	chr4.3:66824643-66824662	None:intergenic	30.0%
AGAAAGATTAGCAAAAACCA+TGG	+	chr4.3:66824669-66824688	None:intergenic	30.0%
CATAGTCAAACCAAAACTAA+AGG	+	chr4.3:66823455-66823474	None:intergenic	30.0%
CTAGAAGCTCATTCTTTAAT+TGG	-	chr4.3:66824976-66824995	MS.gene93924:intron	30.0%
CTGCTAAGAATGTCAATATT+TGG	-	chr4.3:66823736-66823755	MS.gene93924:CDS	30.0%
GAGAACTTTCTATGTAATTC+TGG	+	chr4.3:66824265-66824284	None:intergenic	30.0%
TAATACAATTTACAGGGACT+AGG	-	chr4.3:66824777-66824796	MS.gene93924:CDS	30.0%
AAACCTTGTGTTCAAGCTTT+CGG	-	chr4.3:66824912-66824931	MS.gene93924:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	66823160	66826581	66823160	ID=MS.gene93924
chr4.3	mRNA	66823160	66826581	66823160	ID=MS.gene93924.t1;Parent=MS.gene93924
chr4.3	exon	66826455	66826581	66826455	ID=MS.gene93924.t1.exon1;Parent=MS.gene93924.t1
chr4.3	CDS	66826455	66826581	66826455	ID=cds.MS.gene93924.t1;Parent=MS.gene93924.t1
chr4.3	exon	66825881	66826098	66825881	ID=MS.gene93924.t1.exon2;Parent=MS.gene93924.t1
chr4.3	CDS	66825881	66826098	66825881	ID=cds.MS.gene93924.t1;Parent=MS.gene93924.t1
chr4.3	exon	66824438	66824949	66824438	ID=MS.gene93924.t1.exon3;Parent=MS.gene93924.t1
chr4.3	CDS	66824438	66824949	66824438	ID=cds.MS.gene93924.t1;Parent=MS.gene93924.t1
chr4.3	exon	66823160	66823976	66823160	ID=MS.gene93924.t1.exon4;Parent=MS.gene93924.t1
chr4.3	CDS	66823160	66823976	66823160	ID=cds.MS.gene93924.t1;Parent=MS.gene93924.t1

Gene Sequence

>MS.gene93924

ATGGCAGAATCCAACGAAGTGCTGTTAGAAGCTCAATTAGCTATTGTTGATGGCGCCGTTGATTACAAAGGACAGCCCGCAGTTAGGTCCGAATCTGGTTATTGGAGATCCGCTTGGTTTATCATAGGTACACATTTTCAGTACTGATTTGTTTTTATCATAATAATTAAGGTTGGTTTGATAAAGAGTTGGTCAATACCCCGCGCGCGGATTCAACTTCTGCCACCGGTGCTAAGACCTTGCTAATGAATGATATGTCGCTCTAAATATCAGTGTCAGCACTCTTTTTGAACCTTTAGTTTTGGTTTGACTATGATGAACTTTCGAAACCCTATCTAGCTAAACTTTTTACTAAAAAAAGCTCTACTTCTTAACCTTTCTCATCCCAGCCACCAAATCAATTTTATATCTCTTTCTGCAGCTCAATTACTTTCTTTTTAAATGGTGATGAGAATTGGAATGAATTATGAATGTTTTGTTTAGGTGTCGAAGTGGCGGAGAGGGTATCATATTATGGAATTCAAGGGAACTTGATATCATATCTAACAGGACCACTCAAACAAAGCACTGCAACAGCTGCTAAGAATGTCAATATTTGGTCCGGAACGGCTTCCCTCCTTCCTCTCTTAGGTGCTTTCGTTGCTGATTCTTTTCTTGGACGCTATCGAACAATCATACTTGCTTCTCTTATCTATATATTGGTTAGTTCAGTTCGTCTCTTTTATTTTTGTCTCTTCAATTTTTACACTCTAAAATGAATGGCTTCTCTCCAACAACTTGAATTTTTACGCCATAGTTAATGGTTCATTTTAGGAGAAATTTTCGGTATCATGGAGTTTGGATGAGAACTTTTATTTTGGTGATTTCTACTCATTTTTTTGTTGTGCTACCATCAGTCAAAATTAATTCTTTTATTAATTTAGTTTAAAATAATTACTATAAAAAAGTTACATGACATTATACGACAGCAGTTGCCAGTTGCATCCTTGGGGTTTGAATCTAGTAGTCCGAGTCCGAGGTAATGGTGACACCAGACTAACATGTCGCCCAGTGCAAATTCCGGACGTTTAACATATATAACATTTCAATTTATTTCAATTTACCAGAATTACATAGAAAGTTCTCTCTCTTAACTAAATGACACAAGTTTCTTTATACATATAGAGACACTTTTAGTTTGGTGGCTGAAACAGAAGACAAAAATCATGATTTCTTGACTCAAAATTATATGCCAAAATTATTTTAGAATCATTTCTTTTATGCTTCGTGCACGAGATTAATTGAGAGAATTTTTTTTTCTGTAAAATTCTATTGATCGATACTATTGATTTGAGTGTGCGATTCAAATCAACATTCTGAAAGTATCTTGAAGGGGATTCACTAGTTACCCATTTGCATCTAGCTTGCATCCAAACTGGTGGAGACAAATCGAACATAAAGCTTAGTGTCTTCACACACCATTTCGAATTTATTTGTGCAACCATCATCATATCTTAACACTGTCTTCCATGGTTTTTGCTAATCTTTCTATCTTTCATTATTTTGATGTATGATATATTAAAAAAATGGATAGACAGATAGTTATGTGTGCTCATGTTTTGATGTTGGTCATTGGCTTAATACAATTTACAGGGACTAGGCTTGTTAACACTATCAGCTTTGCTCCCTTCCCTTACATATTGTTCTCCTCAGTCACAAGTAATCTTATTCTTCGTCTCACTCTATCTAGTTGCCATTGGACAAGGTGGGCATAAACCTTGTGTTCAAGCTTTCGGGGCGGATCAATTCGATGAAAAACATCCTAAAGAGCACACAGCTAGAAGCTCATTCTTTAATTGGTGGTATTTTACTATGATTGCAGGTTGCACAACAACACTTACAATCTTGAACTATATACAAGATAACATTAGTTGGGTTCTTGGATTTGGAATCCCTTGTGTTGTAATGATCATCGCTTTGATTGTTTTTTTGCTTGGAACAAGGACATATAGGTTTAACATTAAGGATAATGACAAGAGTCCCTTTCTTAGAATTGGTCGTGTCTTTGTTGCGGCTATAAGAAATTGGCGAAGTACCTTATCAACGACGGATTTTGAAGAAGAATGTGATGGACTACTTCGCAGTCAAAGTTCTGAACAATTCAAGTAAGAATAACAATGCTAACTTATTCTTGTTTTTTAATGTTATGTCTATTAAGTTCAATCTTATTAGTAGCATTCTGAAAGAAGAAAATATGATGAATTACATTATAAGAAACTACCTTCTAAGTGTTAATTACTTTAGAGCTCAGTTAGTGTTTGGAATTGAATCTTCTGTTAATATGTATTTTCTTGTATTGATTCATCTGCTTATTTCAATGTATTGGTTCATCTACAATTATTGTACATTATTAATGTTTCATCCTAGGTAGAGCTCAACAAGGAATAAAATAAATTGAGAGAAAGATTGATTATTTGGAATTTGATTACAATACGTGTTGGATACCTTTTATATTGTGATCATAACAAAACTAACAAATCCTAACCAACTCAAACTAATTCCAATAAATTAAAACACTGAAAGATTATGACAATTTTGACTTAGCTTGTAATTTCTACATTGGCAGCTTCCTTAACAAGGCACTGCTAACACCAAAGGGATCCAAAGAAGATGAAACTTGTAGCCTTAGTGAGGTGGAAGAAGCTAAGGCTGTTCTAAGGTTGGTTCCAATTTGGGCTTCAACTTTGGTTTATGGTATTGTCTTTGCTCAAGTTTTTACATTCTTCACCAAGCAAGGGACTTCAATGGAGAGAACAATATTTCCTGGATTTGACATACCTCCCTCTTCGCTTCAAACGATAAAATGGCTTGCAATTGTTCTCTTCTGCCCTATCTATGAGCACATATTCGTGCCACTAGCAAGAGTTATCACCGGAAAACCCTCAGGCATCACAATGCTTCAACGAATTGGCACTGGAATTTTTATATCAATATTCATGGTAGTATTTGCAGCCTTTGTTGAGATGAAAAGACTAAAAATAGCACAAGAGCATGGTCTTGTTGATGATCCAAATGCAACTGTTCCAATGAGTATATGGTGGTTGGTTCCTCAATACTTTTTGTTTGGAGTTTCTGAGGTTTTTACTATGGTTGGTCTTCAGGAATTTTTCTATGATCAAGTCCCAAATGAACTAAGAAGCATGGGACTTGCACTCTATTTGAGTATTGTTGGTGTTGGAAGCTTTCTAAGTGGCTTTCTCATTTCTTTGATAGAATATTTTAGCGGCAAAGATGATCGTGAAAGTTGGTTTTGTGACAATATCAATAAAGCACATTTTGATTACTTTTATTGGTTCCTTGCTGGATTAAGTGTGGTGGGATTTACTTTGTTCATTTACTTTGCAAAATCATACATTTATAATCACAAAGGCACTACCACATAA

Protein sequence

>MS.gene93924.t1

MAESNEVLLEAQLAIVDGAVDYKGQPAVRSESGYWRSAWFIIGVEVAERVSYYGIQGNLISYLTGPLKQSTATAAKNVNIWSGTASLLPLLGAFVADSFLGRYRTIILASLIYILGLGLLTLSALLPSLTYCSPQSQVILFFVSLYLVAIGQGGHKPCVQAFGADQFDEKHPKEHTARSSFFNWWYFTMIAGCTTTLTILNYIQDNISWVLGFGIPCVVMIIALIVFLLGTRTYRFNIKDNDKSPFLRIGRVFVAAIRNWRSTLSTTDFEEECDGLLRSQSSEQFNFLNKALLTPKGSKEDETCSLSEVEEAKAVLRLVPIWASTLVYGIVFAQVFTFFTKQGTSMERTIFPGFDIPPSSLQTIKWLAIVLFCPIYEHIFVPLARVITGKPSGITMLQRIGTGIFISIFMVVFAAFVEMKRLKIAQEHGLVDDPNATVPMSIWWLVPQYFLFGVSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIVGVGSFLSGFLISLIEYFSGKDDRESWFCDNINKAHFDYFYWFLAGLSVVGFTLFIYFAKSYIYNHKGTTT