AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93924


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93924.t1 MTR_4g033315 90.664 557 52 0 1 557 1 557 0.0 1023
MS.gene93924.t1 MTR_4g033310 90.664 557 52 0 1 557 1 557 0.0 1023
MS.gene93924.t1 MTR_4g033330 94.934 533 27 0 1 533 1 533 0.0 1009
MS.gene93924.t1 MTR_0294s0020 87.792 557 66 1 1 557 1 555 0.0 981
MS.gene93924.t1 MTR_4g033325 86.559 558 71 2 1 557 1 555 0.0 979
MS.gene93924.t1 MTR_4g033395 85.341 498 71 2 1 496 1 498 0.0 880
MS.gene93924.t1 MTR_4g033375 85.141 498 72 2 1 496 1 498 0.0 872
MS.gene93924.t1 MTR_4g033325 86.005 443 58 2 116 557 18 457 0.0 789
MS.gene93924.t1 MTR_4g033385 84.650 443 67 1 116 557 16 458 0.0 787
MS.gene93924.t1 MTR_4g033325 85.714 434 58 2 125 557 1 431 0.0 772
MS.gene93924.t1 MTR_3g005010 66.789 545 170 4 13 555 12 547 0.0 719
MS.gene93924.t1 MTR_4g033310 89.474 304 32 0 254 557 190 493 0.0 569
MS.gene93924.t1 MTR_4g033310 91.146 192 17 0 1 192 1 192 4.04e-111 340
MS.gene93924.t1 MTR_8g038880 47.145 543 255 8 30 551 19 550 5.40e-162 473
MS.gene93924.t1 MTR_3g014790 43.993 566 277 12 17 557 5 555 1.13e-157 462
MS.gene93924.t1 MTR_7g067010 40.603 564 310 6 8 550 1 560 1.69e-154 454
MS.gene93924.t1 MTR_7g098200 41.103 562 307 6 17 557 15 573 4.77e-154 454
MS.gene93924.t1 MTR_7g098200 40.975 554 309 5 17 557 15 563 1.95e-153 452
MS.gene93924.t1 MTR_3g072300 40.860 558 309 7 17 555 10 565 1.49e-151 447
MS.gene93924.t1 MTR_7g098180 40.754 557 305 6 17 551 17 570 7.05e-151 446
MS.gene93924.t1 MTR_4g015080 40.780 564 309 7 10 552 13 572 8.78e-151 445
MS.gene93924.t1 MTR_1g042310 41.472 557 300 8 17 551 12 564 6.10e-149 441
MS.gene93924.t1 MTR_3g462710 40.885 565 307 8 10 551 3 563 1.14e-147 437
MS.gene93924.t1 MTR_3g069500 39.216 561 308 8 10 551 14 560 4.95e-147 436
MS.gene93924.t1 MTR_3g069420 39.437 568 316 7 3 551 11 569 1.32e-146 435
MS.gene93924.t1 MTR_4g019580 38.669 556 314 6 17 552 22 570 2.56e-146 434
MS.gene93924.t1 MTR_3g069440 40.468 556 308 8 15 551 17 568 2.83e-146 434
MS.gene93924.t1 MTR_1g041835 41.547 556 300 8 17 551 13 564 2.84e-145 431
MS.gene93924.t1 MTR_7g065080 38.489 556 309 8 17 552 17 559 2.58e-142 424
MS.gene93924.t1 MTR_7g098040 38.530 558 315 6 17 551 20 572 3.17e-141 422
MS.gene93924.t1 MTR_7g098160 38.849 556 316 7 17 551 19 571 5.35e-141 421
MS.gene93924.t1 MTR_1g041815 40.827 556 304 8 17 551 13 564 1.27e-140 419
MS.gene93924.t1 MTR_1g075440 39.318 557 312 7 17 551 14 566 1.51e-140 419
MS.gene93924.t1 MTR_7g098090 38.681 561 315 6 17 551 19 576 3.28e-139 416
MS.gene93924.t1 MTR_1g042310 41.635 526 281 8 48 551 6 527 6.08e-139 414
MS.gene93924.t1 MTR_1g042310 41.412 524 281 8 50 551 1 520 4.03e-137 409
MS.gene93924.t1 MTR_1g041875 38.734 537 296 8 17 531 15 540 2.97e-134 403
MS.gene93924.t1 MTR_7g098230 37.523 541 314 6 38 557 33 570 1.61e-132 399
MS.gene93924.t1 MTR_7g098220 37.230 556 325 6 17 551 16 568 2.53e-129 390
MS.gene93924.t1 MTR_1g041885 40.079 509 268 8 50 534 1 496 3.22e-127 383
MS.gene93924.t1 MTR_5g055000 37.968 561 311 10 29 557 16 571 2.24e-125 380
MS.gene93924.t1 MTR_5g012270 38.137 569 321 8 12 553 10 574 5.91e-125 379
MS.gene93924.t1 MTR_4g101380 38.515 579 316 8 8 553 4 575 4.79e-124 377
MS.gene93924.t1 MTR_3g112470 37.814 558 314 11 9 545 1 546 9.43e-124 375
MS.gene93924.t1 MTR_3g112460 37.455 558 316 11 9 545 1 546 7.02e-123 373
MS.gene93924.t1 MTR_5g012290 38.811 572 313 9 12 553 8 572 1.97e-121 370
MS.gene93924.t1 MTR_7g088825 36.643 554 314 10 29 553 20 565 4.13e-118 362
MS.gene93924.t1 MTR_6g008690 37.848 539 299 9 36 552 12 536 8.98e-118 359
MS.gene93924.t1 MTR_7g098220 36.952 525 307 6 48 551 3 524 1.27e-117 359
MS.gene93924.t1 MTR_7g010820 36.953 571 325 11 10 550 5 570 2.45e-116 357
MS.gene93924.t1 MTR_7g088820 35.263 570 328 12 1 541 1 558 1.80e-115 355
MS.gene93924.t1 MTR_7g065080 37.526 485 270 8 88 552 1 472 2.17e-115 351
MS.gene93924.t1 MTR_7g088790 34.729 573 343 9 9 554 7 575 9.57e-113 348
MS.gene93924.t1 MTR_7g005930 34.347 559 329 11 23 557 27 571 5.84e-112 345
MS.gene93924.t1 MTR_7g098200 38.745 462 259 6 117 557 1 459 2.72e-111 340
MS.gene93924.t1 MTR_7g098150 39.326 445 246 5 17 440 19 460 1.75e-110 338
MS.gene93924.t1 MTR_3g112450 35.907 557 322 10 15 548 7 551 1.28e-109 339
MS.gene93924.t1 MTR_4g114340 39.312 552 306 8 16 545 9 553 1.24e-108 337
MS.gene93924.t1 MTR_5g014150 34.549 576 341 10 3 548 16 585 1.33e-108 337
MS.gene93924.t1 MTR_3g462710 39.907 431 240 6 137 552 29 455 2.05e-107 330
MS.gene93924.t1 MTR_5g038060 34.829 557 321 9 29 551 29 577 4.99e-107 333
MS.gene93924.t1 MTR_4g098800 34.568 567 330 11 10 546 15 570 9.18e-107 332
MS.gene93924.t1 MTR_4g098800 34.568 567 330 11 10 546 80 635 7.10e-106 332
MS.gene93924.t1 MTR_4g107670 33.565 575 343 8 10 551 3 571 9.21e-105 327
MS.gene93924.t1 MTR_1g116930 34.312 545 326 10 27 548 19 554 2.34e-104 326
MS.gene93924.t1 MTR_7g088820 35.081 496 291 9 73 541 5 496 2.12e-103 322
MS.gene93924.t1 MTR_5g038380 33.564 578 344 9 11 555 8 578 3.08e-103 323
MS.gene93924.t1 MTR_2g017750 32.826 591 358 10 2 555 4 592 1.40e-102 322
MS.gene93924.t1 MTR_4g107510 35.219 548 323 9 35 552 40 585 2.63e-102 321
MS.gene93924.t1 MTR_8g469480 34.489 548 323 8 35 551 42 584 2.26e-100 316
MS.gene93924.t1 MTR_8g469310 34.501 571 333 8 18 555 13 575 2.69e-100 315
MS.gene93924.t1 MTR_7g013270 32.807 570 333 12 12 548 71 623 3.55e-100 317
MS.gene93924.t1 MTR_2g005130 34.347 559 336 9 10 551 19 563 1.34e-99 313
MS.gene93924.t1 MTR_3g100980 34.000 550 331 9 25 551 10 550 2.27e-99 312
MS.gene93924.t1 MTR_5g085850 36.201 558 316 9 17 551 16 556 1.66e-97 308
MS.gene93924.t1 MTR_8g087780 33.739 575 344 11 15 554 5 577 3.42e-97 307
MS.gene93924.t1 MTR_4g107580 34.186 547 327 10 35 550 28 572 3.84e-97 307
MS.gene93924.t1 MTR_8g469470 32.801 564 336 9 23 550 24 580 4.53e-97 307
MS.gene93924.t1 MTR_7g006540 32.675 557 332 10 30 550 62 611 7.59e-97 308
MS.gene93924.t1 MTR_8g103233 33.212 551 337 11 23 548 9 553 2.25e-95 302
MS.gene93924.t1 MTR_8g087810 34.715 579 338 13 15 556 5 580 7.06e-94 298
MS.gene93924.t1 MTR_1g026750 33.215 563 337 11 16 548 1 554 7.92e-94 298
MS.gene93924.t1 MTR_4g123537 33.394 551 338 11 21 552 31 571 1.21e-93 299
MS.gene93924.t1 MTR_3g100980 32.526 578 330 11 25 551 10 578 1.87e-93 298
MS.gene93924.t1 MTR_4g107530 33.105 583 347 12 6 557 17 587 1.51e-92 296
MS.gene93924.t1 MTR_1g009200 32.281 570 346 11 4 548 10 564 2.50e-92 295
MS.gene93924.t1 MTR_1g026770 32.847 548 334 9 27 548 11 550 4.41e-92 293
MS.gene93924.t1 MTR_5g038190 30.838 561 348 8 23 551 16 568 8.04e-92 293
MS.gene93924.t1 MTR_1g026740 32.264 561 344 12 16 548 1 553 9.23e-92 293
MS.gene93924.t1 MTR_4g107610 31.892 555 343 8 27 553 27 574 3.69e-90 290
MS.gene93924.t1 MTR_7g088820 33.853 449 266 9 120 541 4 448 2.20e-88 281
MS.gene93924.t1 MTR_1g085090 31.475 556 352 11 17 553 3 548 4.12e-88 284
MS.gene93924.t1 MTR_2g101650 31.285 537 335 10 40 548 33 563 1.34e-87 282
MS.gene93924.t1 MTR_7g111260 32.472 542 339 10 29 553 17 548 3.76e-87 281
MS.gene93924.t1 MTR_4g011280 32.305 551 340 11 25 550 27 569 3.89e-87 281
MS.gene93924.t1 MTR_2g101590 32.984 573 341 16 10 550 4 565 1.55e-86 281
MS.gene93924.t1 MTR_7g064780 29.912 565 356 9 17 549 12 568 2.27e-85 276
MS.gene93924.t1 MTR_2g101610 31.130 575 350 15 10 550 4 566 8.04e-85 276
MS.gene93924.t1 MTR_2g101640 29.930 568 360 12 10 548 4 562 8.93e-82 268
MS.gene93924.t1 MTR_1g057460 31.191 529 329 13 40 550 53 564 1.74e-80 263
MS.gene93924.t1 MTR_7g098210 31.862 521 265 10 50 555 1 446 3.46e-80 259
MS.gene93924.t1 MTR_2g101560 30.594 572 357 14 10 550 4 566 6.85e-78 258
MS.gene93924.t1 MTR_1g057460 30.980 510 317 13 59 550 1 493 1.47e-77 253
MS.gene93924.t1 MTR_7g064800 30.880 557 343 9 27 549 22 570 5.97e-77 254
MS.gene93924.t1 MTR_4g024930 30.144 554 342 14 17 548 22 552 4.42e-75 249
MS.gene93924.t1 MTR_0236s0050 29.724 508 324 12 59 548 1 493 3.73e-73 242
MS.gene93924.t1 MTR_2g093640 31.643 572 332 14 16 552 1 548 5.83e-72 240
MS.gene93924.t1 MTR_2g093160 29.947 571 343 13 16 552 1 548 5.68e-70 234
MS.gene93924.t1 MTR_2g093180 30.366 573 339 12 16 552 1 549 1.74e-67 228
MS.gene93924.t1 MTR_7g051880 28.909 550 356 11 9 548 1 525 1.86e-65 222
MS.gene93924.t1 MTR_7g051830 28.102 548 363 9 9 548 1 525 4.68e-62 213
MS.gene93924.t1 MTR_7g052600 28.492 537 357 8 17 548 11 525 5.35e-62 213
MS.gene93924.t1 MTR_4g033390 88.889 90 10 0 466 555 30 119 1.22e-51 173
MS.gene93924.t1 MTR_1g009170 29.353 402 219 11 141 527 3 354 4.88e-46 166
MS.gene93924.t1 MTR_3g065350 39.130 161 90 4 318 478 1 153 9.24e-30 115
MS.gene93924.t1 MTR_7g064160 26.263 99 73 0 17 115 15 113 3.61e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93924.t1 AT1G22540 63.538 554 190 2 10 556 9 557 0.0 688
MS.gene93924.t1 AT1G72125 57.603 559 228 6 1 552 1 557 0.0 624
MS.gene93924.t1 AT1G72120 57.679 560 222 8 1 552 1 553 0.0 613
MS.gene93924.t1 AT1G72140 55.818 550 213 5 16 551 19 552 0.0 605
MS.gene93924.t1 AT1G22550 55.245 572 222 7 1 552 3 560 0.0 601
MS.gene93924.t1 AT1G22570 55.596 554 222 6 16 552 15 561 0.0 584
MS.gene93924.t1 AT1G22570 55.303 528 212 6 42 552 4 524 0.0 551
MS.gene93924.t1 AT1G72130 52.820 532 229 6 29 555 23 537 0.0 532
MS.gene93924.t1 AT3G54450 44.015 543 274 7 29 551 10 542 2.62e-168 489
MS.gene93924.t1 AT2G02040 40.559 572 312 9 1 548 11 578 4.59e-150 443
MS.gene93924.t1 AT5G01180 40.323 558 307 7 17 552 11 564 1.21e-149 442
MS.gene93924.t1 AT5G01180 40.323 558 307 7 17 552 11 564 1.21e-149 442
MS.gene93924.t1 AT5G01180 40.323 558 307 7 17 552 11 564 1.21e-149 442
MS.gene93924.t1 AT3G54140 40.071 564 311 8 10 550 3 562 3.31e-148 438
MS.gene93924.t1 AT3G54140 40.071 564 311 8 10 550 3 562 3.31e-148 438
MS.gene93924.t1 AT3G53960 40.415 579 308 10 3 551 2 573 1.25e-147 438
MS.gene93924.t1 AT2G37900 41.270 567 291 11 10 551 17 566 9.88e-147 434
MS.gene93924.t1 AT1G72130 51.288 427 187 5 133 555 10 419 2.35e-145 426
MS.gene93924.t1 AT1G72130 51.288 427 187 5 133 555 10 419 2.35e-145 426
MS.gene93924.t1 AT1G62200 40.399 552 290 7 17 541 38 577 7.95e-144 427
MS.gene93924.t1 AT2G40460 39.502 562 319 6 11 556 4 560 5.63e-139 415
MS.gene93924.t1 AT2G02020 40.072 559 294 10 3 550 14 542 1.10e-137 410
MS.gene93924.t1 AT1G62200 38.554 581 289 8 17 541 38 606 1.66e-137 412
MS.gene93924.t1 AT1G62200 38.554 581 289 8 17 541 52 620 2.19e-137 412
MS.gene93924.t1 AT5G46050 38.640 559 320 6 17 555 13 568 1.73e-133 401
MS.gene93924.t1 AT5G46040 38.505 535 306 5 17 531 13 544 3.90e-133 400
MS.gene93924.t1 AT2G37900 41.551 503 252 11 74 551 2 487 3.08e-126 379
MS.gene93924.t1 AT5G14940 39.042 543 299 10 29 548 5 538 2.99e-123 374
MS.gene93924.t1 AT2G02020 38.351 558 284 11 3 550 14 521 4.23e-123 372
MS.gene93924.t1 AT3G01350 38.333 540 305 9 33 546 9 546 1.08e-119 365
MS.gene93924.t1 AT1G69870 37.545 554 309 10 28 551 48 594 1.00e-118 364
MS.gene93924.t1 AT1G68570 38.930 542 296 7 40 551 32 568 3.07e-118 362
MS.gene93924.t1 AT1G68570 38.920 537 293 7 45 551 7 538 6.03e-118 360
MS.gene93924.t1 AT1G32450 34.501 571 337 8 10 548 16 581 3.31e-111 344
MS.gene93924.t1 AT2G26690 37.545 554 312 9 16 545 9 552 3.03e-109 338
MS.gene93924.t1 AT1G12110 34.880 582 331 11 3 553 7 571 3.16e-109 338
MS.gene93924.t1 AT4G21680 35.938 576 334 13 5 550 2 572 8.88e-109 337
MS.gene93924.t1 AT3G21670 36.964 560 312 11 17 551 15 558 1.40e-100 316
MS.gene93924.t1 AT1G52190 34.007 544 317 10 40 548 30 566 1.78e-99 314
MS.gene93924.t1 AT1G18880 34.414 555 315 12 35 551 23 566 2.14e-99 313
MS.gene93924.t1 AT1G59740 33.979 568 337 11 17 557 27 583 2.43e-99 313
MS.gene93924.t1 AT2G26690 36.812 527 299 9 43 545 3 519 9.58e-99 310
MS.gene93924.t1 AT5G46050 37.199 457 264 6 119 555 3 456 9.83e-99 308
MS.gene93924.t1 AT1G33440 34.843 574 336 10 7 555 14 574 1.50e-97 308
MS.gene93924.t1 AT1G27040 32.810 573 357 9 6 557 2 567 5.51e-97 306
MS.gene93924.t1 AT3G16180 33.871 558 327 12 25 548 16 565 8.34e-97 306
MS.gene93924.t1 AT1G27040 33.096 562 348 9 17 557 9 563 1.55e-96 305
MS.gene93924.t1 AT1G69850 32.027 587 357 10 9 557 3 585 5.99e-96 304
MS.gene93924.t1 AT2G26690 36.434 516 294 9 54 545 2 507 4.13e-94 298
MS.gene93924.t1 AT5G13400 31.794 563 350 8 20 551 52 611 7.86e-94 300
MS.gene93924.t1 AT5G62730 31.217 567 361 9 1 551 32 585 2.91e-93 297
MS.gene93924.t1 AT1G27080 33.577 548 320 10 33 551 16 548 1.01e-92 295
MS.gene93924.t1 AT5G62680 32.482 548 337 9 35 551 47 592 2.38e-91 293
MS.gene93924.t1 AT1G27040 33.396 536 329 9 43 557 7 535 1.08e-90 289
MS.gene93924.t1 AT5G19640 32.169 544 320 13 32 548 60 581 1.27e-90 291
MS.gene93924.t1 AT3G47960 32.423 549 334 11 35 551 65 608 2.05e-88 286
MS.gene93924.t1 AT5G62730 31.262 531 342 8 37 551 3 526 1.09e-87 281
MS.gene93924.t1 AT1G27080 33.719 519 300 11 62 551 3 506 2.31e-85 275
MS.gene93924.t1 AT5G28470 31.115 556 342 13 28 553 14 558 1.28e-83 271
MS.gene93924.t1 AT1G69860 32.904 544 324 13 35 552 22 550 1.49e-83 271
MS.gene93924.t1 AT5G28470 30.935 556 341 14 28 553 14 556 5.62e-81 264
MS.gene93924.t1 AT3G25280 31.903 536 332 10 21 548 11 521 4.31e-78 255
MS.gene93924.t1 AT3G25260 31.743 545 333 12 12 548 2 515 7.62e-76 249
MS.gene93924.t1 AT3G45680 31.349 571 334 14 11 552 2 543 8.42e-72 240
MS.gene93924.t1 AT3G45650 29.391 558 351 12 17 552 8 544 2.51e-70 236
MS.gene93924.t1 AT3G45710 30.521 557 320 12 31 552 21 545 3.83e-70 236
MS.gene93924.t1 AT3G45700 30.182 550 326 12 30 552 15 533 4.23e-69 233
MS.gene93924.t1 AT3G45660 30.651 522 309 12 58 552 48 543 1.67e-66 226
MS.gene93924.t1 AT3G45660 30.651 522 309 12 58 552 48 543 1.67e-66 226
MS.gene93924.t1 AT3G45660 30.651 522 309 12 58 552 69 564 4.16e-66 225
MS.gene93924.t1 AT3G45650 28.082 584 351 13 17 552 8 570 7.53e-65 222
MS.gene93924.t1 AT3G45720 30.769 520 303 14 40 530 28 519 7.17e-63 216
MS.gene93924.t1 AT5G11570 27.255 521 301 12 40 548 22 476 1.56e-60 208
MS.gene93924.t1 AT3G45690 28.785 535 296 15 30 540 17 490 4.98e-55 194
MS.gene93924.t1 AT2G38100 28.269 520 308 17 59 550 2 484 5.50e-47 172
MS.gene93924.t1 AT2G38100 28.516 519 308 16 59 550 18 500 1.06e-46 171
MS.gene93924.t1 AT2G38100 28.269 520 308 17 59 550 24 506 1.86e-46 171

Find 120 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGCTTCAACTTTGGTTTA+TGG 0.138154 4.3:-66823848 MS.gene93924:CDS
AACCTTGTGTTCAAGCTTTC+GGG 0.149446 4.3:-66824806 MS.gene93924:CDS
TTCTAAGGTTGGTTCCAATT+TGG 0.164932 4.3:-66823868 MS.gene93924:CDS
CTTCTAGCTGTGTGCTCTTT+AGG 0.168298 4.3:+66824759 None:intergenic
CTAGAAGCTCATTCTTTAAT+TGG 0.184688 4.3:-66824743 MS.gene93924:CDS
GCTACAAGTTTCATCTTCTT+TGG 0.207090 4.3:+66823919 None:intergenic
GATAACATTAGTTGGGTTCT+TGG 0.227701 4.3:-66824660 MS.gene93924:CDS
CCCATGCTTCTTAGTTCATT+TGG 0.244157 4.3:+66823398 None:intergenic
GCTTCCCTCCTTCCTCTCTT+AGG 0.246982 4.3:-66825951 MS.gene93924:CDS
TGCTTCTCTTATCTATATAT+TGG 0.248624 4.3:-66825880 MS.gene93924:intron
CTTCGCTTCAAACGATAAAA+TGG 0.249694 4.3:-66823736 MS.gene93924:CDS
ATTAGTTGGGTTCTTGGATT+TGG 0.259493 4.3:-66824654 MS.gene93924:CDS
TCTAAGGTTGGTTCCAATTT+GGG 0.262407 4.3:-66823867 MS.gene93924:CDS
GACATATAGGTTTAACATTA+AGG 0.274752 4.3:-66824577 MS.gene93924:CDS
AAACCTTGTGTTCAAGCTTT+CGG 0.280299 4.3:-66824807 MS.gene93924:CDS
TCCAATTTGGGCTTCAACTT+TGG 0.295489 4.3:-66823855 MS.gene93924:CDS
CCATGCTTCTTAGTTCATTT+GGG 0.297304 4.3:+66823399 None:intergenic
TTAGGTCCGAATCTGGTTAT+TGG 0.299083 4.3:-66826477 MS.gene93924:CDS
AGGAAGGAGGGAAGCCGTTC+CGG 0.306844 4.3:+66825959 None:intergenic
AAGAGTCCCTTTCTTAGAAT+TGG 0.315382 4.3:-66824546 MS.gene93924:CDS
ACCAAAGTTGAAGCCCAAAT+TGG 0.319490 4.3:+66823854 None:intergenic
CTCATTGGAACAGTTGCATT+TGG 0.332167 4.3:+66823512 None:intergenic
CTGCTAAGAATGTCAATATT+TGG 0.333018 4.3:-66825983 MS.gene93924:CDS
ACGAATATGTGCTCATAGAT+AGG 0.336290 4.3:+66823692 None:intergenic
ATGGAGAGAACAATATTTCC+TGG 0.340438 4.3:-66823776 MS.gene93924:CDS
GCACTCTATTTGAGTATTGT+TGG 0.352342 4.3:-66823371 MS.gene93924:CDS
TCATCTTCTTTGGATCCCTT+TGG 0.353258 4.3:+66823929 None:intergenic
CTCCATTGAAGTCCCTTGCT+TGG 0.358040 4.3:+66823793 None:intergenic
TTGTTGCGGCTATAAGAAAT+TGG 0.360335 4.3:-66824515 MS.gene93924:CDS
GCTCAATTAGCTATTGTTGA+TGG 0.372190 4.3:-66826529 MS.gene93924:CDS
TTCAAAATCCGTCGTTGATA+AGG 0.373915 4.3:+66824485 None:intergenic
GCGGAGAGGGTATCATATTA+TGG 0.374011 4.3:-66826065 MS.gene93924:CDS
ATCACAATGCTTCAACGAAT+TGG 0.388981 4.3:-66823632 MS.gene93924:CDS
CAACTGTTCCAATGAGTATA+TGG 0.398189 4.3:-66823505 MS.gene93924:CDS
AGATCCGCTTGGTTTATCAT+AGG 0.431139 4.3:-66826454 MS.gene93924:intron
GTGTTAGCAGTGCCTTGTTA+AGG 0.431339 4.3:+66823951 None:intergenic
TGCTTGGAACAAGGACATAT+AGG 0.439390 4.3:-66824590 MS.gene93924:CDS
CACAAAGGCACTACCACATA+AGG 0.442991 4.3:-66823158 None:intergenic
CCCGCAGTTAGGTCCGAATC+TGG 0.446760 4.3:-66826484 MS.gene93924:CDS
AACTTGATATCATATCTAAC+AGG 0.448274 4.3:-66826032 MS.gene93924:CDS
ACAAAGGACAGCCCGCAGTT+AGG 0.470650 4.3:-66826495 MS.gene93924:CDS
ATATACAAGATAACATTAGT+TGG 0.471533 4.3:-66824668 MS.gene93924:CDS
ACTGAGGAGAACAATATGTA+AGG 0.472580 4.3:+66824889 None:intergenic
GAAGCTCATTCTTTAATTGG+TGG 0.474451 4.3:-66824740 MS.gene93924:CDS
GACACGACCAATTCTAAGAA+AGG 0.479274 4.3:+66824539 None:intergenic
ACCAACCACCATATACTCAT+TGG 0.479829 4.3:+66823497 None:intergenic
AGCTTCTAACAGCACTTCGT+TGG 0.483350 4.3:+66826549 None:intergenic
AAGAAGCTAAGGCTGTTCTA+AGG 0.485876 4.3:-66823883 MS.gene93924:CDS
AAGAATGTCAATATTTGGTC+CGG 0.487098 4.3:-66825978 MS.gene93924:CDS
GGATCTCCAATAACCAGATT+CGG 0.490538 4.3:+66826471 None:intergenic
GTATCATATTATGGAATTCA+AGG 0.491184 4.3:-66826056 MS.gene93924:CDS
TATACAAGATAACATTAGTT+GGG 0.492477 4.3:-66824667 MS.gene93924:CDS
TTTACATTCTTCACCAAGCA+AGG 0.493614 4.3:-66823806 MS.gene93924:CDS
TAGCTTCTTCCACCTCACTA+AGG 0.507911 4.3:+66823897 None:intergenic
AGCTAAGGCTGTTCTAAGGT+TGG 0.516261 4.3:-66823879 MS.gene93924:CDS
CTTGCTGGATTAAGTGTGGT+GGG 0.518167 4.3:-66823224 MS.gene93924:CDS
GTTGCAGTGCTTTGTTTGAG+TGG 0.521993 4.3:+66826008 None:intergenic
ACACGACCAATTCTAAGAAA+GGG 0.526584 4.3:+66824540 None:intergenic
GCAAAGATGATCGTGAAAGT+TGG 0.529983 4.3:-66823295 MS.gene93924:CDS
TCACTCTATCTAGTTGCCAT+TGG 0.531734 4.3:-66824843 MS.gene93924:CDS
AATCATTGGCTATCCTTATG+TGG 0.535072 4.3:+66823145 None:intergenic
TAGTGAGGTGGAAGAAGCTA+AGG 0.539918 4.3:-66823894 MS.gene93924:CDS
CCCAAATGAACTAAGAAGCA+TGG 0.542573 4.3:-66823399 MS.gene93924:CDS
GAGGGAGGTATGTCAAATCC+AGG 0.544553 4.3:+66823758 None:intergenic
CTGGTTATTGGAGATCCGCT+TGG 0.544926 4.3:-66826465 MS.gene93924:CDS
CCTTGCTGGATTAAGTGTGG+TGG 0.545190 4.3:-66823225 MS.gene93924:CDS
TATTTGAGTATTGTTGGTGT+TGG 0.547399 4.3:-66823365 MS.gene93924:CDS
ATGCTTCAACGAATTGGCAC+TGG 0.548210 4.3:-66823626 MS.gene93924:CDS
AATTGGTCGTGTCTTTGTTG+CGG 0.548642 4.3:-66824529 MS.gene93924:CDS
CATTGGCAGCTTCCTTAACA+AGG 0.549697 4.3:-66823963 MS.gene93924:intron
AAGGCACTGCTAACACCAAA+GGG 0.549823 4.3:-66823944 MS.gene93924:CDS
CGAATATGTGCTCATAGATA+GGG 0.550106 4.3:+66823693 None:intergenic
AGGTGTCGAAGTGGCGGAGA+GGG 0.552102 4.3:-66826078 MS.gene93924:CDS
TCCAATGAGTATATGGTGGT+TGG 0.556157 4.3:-66823498 MS.gene93924:CDS
CGAAAGCACCTAAGAGAGGA+AGG 0.559132 4.3:+66825943 None:intergenic
GTTATCACCGGAAAACCCTC+AGG 0.564479 4.3:-66823656 MS.gene93924:CDS
TTTATCGTTTGAAGCGAAGA+GGG 0.565404 4.3:+66823740 None:intergenic
GCCCCGAAAGCTTGAACACA+AGG 0.567096 4.3:+66824804 None:intergenic
AGCACCTAAGAGAGGAAGGA+GGG 0.574375 4.3:+66825947 None:intergenic
CACCAAGCAAGGGACTTCAA+TGG 0.574912 4.3:-66823795 MS.gene93924:CDS
GGTGTTGGAAGCTTTCTAAG+TGG 0.575161 4.3:-66823350 MS.gene93924:CDS
GGAGAACAATATGTAAGGGA+AGG 0.577683 4.3:+66824894 None:intergenic
TTTATGCCCACCTTGTCCAA+TGG 0.578469 4.3:+66824827 None:intergenic
TGTCAATATTTGGTCCGGAA+CGG 0.578632 4.3:-66825973 MS.gene93924:CDS
TTGTTTAGGTGTCGAAGTGG+CGG 0.578707 4.3:-66826084 MS.gene93924:intron
CAAGGCACTGCTAACACCAA+AGG 0.579228 4.3:-66823945 MS.gene93924:CDS
CCAAATGAACTAAGAAGCAT+GGG 0.579849 4.3:-66823398 MS.gene93924:CDS
TATCTAGTTGCCATTGGACA+AGG 0.587068 4.3:-66824837 MS.gene93924:CDS
TATCATATTATGGAATTCAA+GGG 0.587902 4.3:-66826055 MS.gene93924:CDS
AACTTGTAGCCTTAGTGAGG+TGG 0.589145 4.3:-66823906 MS.gene93924:CDS
CCGGTGATAACTCTTGCTAG+TGG 0.591715 4.3:+66823668 None:intergenic
CCAGATTCGGACCTAACTGC+GGG 0.591748 4.3:+66826484 None:intergenic
TAATACAATTTACAGGGACT+AGG 0.592138 4.3:-66824942 MS.gene93924:intron
CTGAGGAGAACAATATGTAA+GGG 0.592564 4.3:+66824890 None:intergenic
ACCTTGTGTTCAAGCTTTCG+GGG 0.599219 4.3:-66824805 MS.gene93924:CDS
TGAAGCATTGTGATGCCTGA+GGG 0.600479 4.3:+66823641 None:intergenic
TTACATTCTTCACCAAGCAA+GGG 0.604573 4.3:-66823805 MS.gene93924:CDS
GCGATGATCATTACAACACA+AGG 0.605088 4.3:+66824627 None:intergenic
AAGCACCTAAGAGAGGAAGG+AGG 0.605702 4.3:+66825946 None:intergenic
GCAACGAAAGCACCTAAGAG+AGG 0.607557 4.3:+66825939 None:intergenic
GAGAACAATATGTAAGGGAA+GGG 0.609361 4.3:+66824895 None:intergenic
GTTCCTTGCTGGATTAAGTG+TGG 0.609537 4.3:-66823228 MS.gene93924:CDS
TTGAAGCATTGTGATGCCTG+AGG 0.610945 4.3:+66823640 None:intergenic
AATAAGATTACTTGTGACTG+AGG 0.611966 4.3:+66824873 None:intergenic
CTAGTTGCCATTGGACAAGG+TGG 0.620501 4.3:-66824834 MS.gene93924:CDS
GGGCTGTCCTTTGTAATCAA+CGG 0.635317 4.3:+66826504 None:intergenic
ACCAGATTCGGACCTAACTG+CGG 0.636959 4.3:+66826483 None:intergenic
CCACTAGCAAGAGTTATCAC+CGG 0.641489 4.3:-66823668 MS.gene93924:CDS
ATCGTTTGAAGCGAAGAGGG+AGG 0.642861 4.3:+66823743 None:intergenic
TGAAACTTGTAGCCTTAGTG+AGG 0.657268 4.3:-66823909 MS.gene93924:CDS
TAGTTGCCATTGGACAAGGT+GGG 0.664534 4.3:-66824833 MS.gene93924:CDS
CCACCACACTTAATCCAGCA+AGG 0.665336 4.3:+66823225 None:intergenic
GATGGCGCCGTTGATTACAA+AGG 0.673450 4.3:-66826511 MS.gene93924:CDS
TCATACATTTATAATCACAA+AGG 0.673451 4.3:-66823173 MS.gene93924:CDS
TAGGTGTCGAAGTGGCGGAG+AGG 0.678991 4.3:-66826079 MS.gene93924:CDS
GCGAAGTACCTTATCAACGA+CGG 0.682131 4.3:-66824493 MS.gene93924:CDS
CGATGATCATTACAACACAA+GGG 0.690961 4.3:+66824628 None:intergenic
TTGTGTTCAAGCTTTCGGGG+CGG 0.695110 4.3:-66824802 MS.gene93924:CDS
TGTACCTATGATAAACCAAG+CGG 0.704715 4.3:+66826450 None:intergenic
CTGTTCCAATGAGTATATGG+TGG 0.715883 4.3:-66823502 MS.gene93924:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATGATATATTAAAAAAA+TGG - chr4.3:66824706-66824725 MS.gene93924:CDS 10.0%
!!! AAATGATTCTAAAATAATTT+TGG + chr4.3:66824394-66824413 None:intergenic 10.0%
!!! AATTTTTATATCAATATTCA+TGG - chr4.3:66826116-66826135 MS.gene93924:intron 10.0%
!!! TGTTTTTATCATAATAATTA+AGG - chr4.3:66823309-66823328 MS.gene93924:CDS 10.0%
!! AAAGAGATATAAAATTGATT+TGG + chr4.3:66823555-66823574 None:intergenic 15.0%
!! TTTATCATAATAATTAAGGT+TGG - chr4.3:66823313-66823332 MS.gene93924:CDS 15.0%
!!! TCAATTACTTTCTTTTTAAA+TGG - chr4.3:66823582-66823601 MS.gene93924:CDS 15.0%
!! ATATACAAGATAACATTAGT+TGG - chr4.3:66825051-66825070 MS.gene93924:intron 20.0%
!! TAAAGTAATTAACACTTAGA+AGG + chr4.3:66825422-66825441 None:intergenic 20.0%
!! TATACAAGATAACATTAGTT+GGG - chr4.3:66825052-66825071 MS.gene93924:intron 20.0%
!! TATCATATTATGGAATTCAA+GGG - chr4.3:66823664-66823683 MS.gene93924:CDS 20.0%
!! TCATACATTTATAATCACAA+AGG - chr4.3:66826546-66826565 MS.gene93924:CDS 20.0%
!! TGTTATGATCACAATATAAA+AGG + chr4.3:66825646-66825665 None:intergenic 20.0%
!!! AAAGAATTAATTTTGACTGA+TGG + chr4.3:66824052-66824071 None:intergenic 20.0%
!!! CACATTTTGATTACTTTTAT+TGG - chr4.3:66826469-66826488 MS.gene93924:CDS 20.0%
!!! CTTTCAGTGTTTTAATTTAT+TGG + chr4.3:66825702-66825721 None:intergenic 20.0%
!!! GAATTATGAATGTTTTGTTT+AGG - chr4.3:66823621-66823640 MS.gene93924:CDS 20.0%
!!! TCTTTGATAGAATATTTTAG+CGG - chr4.3:66826402-66826421 MS.gene93924:intron 20.0%
!!! TTCATTTTAGGAGAAATTTT+CGG - chr4.3:66823963-66823982 MS.gene93924:intron 20.0%
!!! TTTTTACACTCTAAAATGAA+TGG - chr4.3:66823899-66823918 MS.gene93924:CDS 20.0%
! AACTTGATATCATATCTAAC+AGG - chr4.3:66823687-66823706 MS.gene93924:CDS 25.0%
! AATTTGATTACAATACGTGT+TGG - chr4.3:66825617-66825636 MS.gene93924:intron 25.0%
! AGTAAAAAGTTTAGCTAGAT+AGG + chr4.3:66823493-66823512 None:intergenic 25.0%
! ATCTGCTTATTTCAATGTAT+TGG - chr4.3:66825502-66825521 MS.gene93924:intron 25.0%
! CATTATTAATGTTTCATCCT+AGG - chr4.3:66825544-66825563 MS.gene93924:intron 25.0%
! CTAAAATGAACCATTAACTA+TGG + chr4.3:66823953-66823972 None:intergenic 25.0%
! GACATATAGGTTTAACATTA+AGG - chr4.3:66825142-66825161 MS.gene93924:intron 25.0%
! GTAAAAAGTTTAGCTAGATA+GGG + chr4.3:66823492-66823511 None:intergenic 25.0%
! GTATCATATTATGGAATTCA+AGG - chr4.3:66823663-66823682 MS.gene93924:CDS 25.0%
! TGAGAGAAAGATTGATTATT+TGG - chr4.3:66825594-66825613 MS.gene93924:intron 25.0%
! TGCTTCTCTTATCTATATAT+TGG - chr4.3:66823839-66823858 MS.gene93924:CDS 25.0%
! TGTTATATATGTTAAACGTC+CGG + chr4.3:66824222-66824241 None:intergenic 25.0%
! TTGCACAAATAAATTCGAAA+TGG + chr4.3:66824620-66824639 None:intergenic 25.0%
! TTGGCTTAATACAATTTACA+GGG - chr4.3:66824771-66824790 MS.gene93924:CDS 25.0%
!! AATTTTTACGCCATAGTTAA+TGG - chr4.3:66823940-66823959 MS.gene93924:CDS 25.0%
!! ATTGGCTTAATACAATTTAC+AGG - chr4.3:66824770-66824789 MS.gene93924:CDS 25.0%
!! CATAGTTAATGGTTCATTTT+AGG - chr4.3:66823951-66823970 MS.gene93924:CDS 25.0%
!! TTATTGGAATTAGTTTGAGT+TGG + chr4.3:66825686-66825705 None:intergenic 25.0%
!!! ATATAGAGACACTTTTAGTT+TGG - chr4.3:66824318-66824337 MS.gene93924:intron 25.0%
!!! GAGATATAAAATTGATTTGG+TGG + chr4.3:66823552-66823571 None:intergenic 25.0%
!!! TCTTTTTGAACCTTTAGTTT+TGG - chr4.3:66823442-66823461 MS.gene93924:CDS 25.0%
!!! TTAGCTTGTAATTTCTACAT+TGG - chr4.3:66825739-66825758 MS.gene93924:intron 25.0%
!!! TTGGATGAGAACTTTTATTT+TGG - chr4.3:66823997-66824016 MS.gene93924:intron 25.0%
!!! TTTTAAATGGTGATGAGAAT+TGG - chr4.3:66823595-66823614 MS.gene93924:CDS 25.0%
AAGAATGTCAATATTTGGTC+CGG - chr4.3:66823741-66823760 MS.gene93924:CDS 30.0%
AATAAGATTACTTGTGACTG+AGG + chr4.3:66824849-66824868 None:intergenic 30.0%
ACAGTGTTAAGATATGATGA+TGG + chr4.3:66824643-66824662 None:intergenic 30.0%
AGAAAGATTAGCAAAAACCA+TGG + chr4.3:66824669-66824688 None:intergenic 30.0%
CATAGTCAAACCAAAACTAA+AGG + chr4.3:66823455-66823474 None:intergenic 30.0%
CTAGAAGCTCATTCTTTAAT+TGG - chr4.3:66824976-66824995 MS.gene93924:intron 30.0%
CTGCTAAGAATGTCAATATT+TGG - chr4.3:66823736-66823755 MS.gene93924:CDS 30.0%
GAGAACTTTCTATGTAATTC+TGG + chr4.3:66824265-66824284 None:intergenic 30.0%
TAATACAATTTACAGGGACT+AGG - chr4.3:66824777-66824796 MS.gene93924:CDS 30.0%
! TAGTCTTTTCATCTCAACAA+AGG + chr4.3:66826154-66826173 None:intergenic 30.0%
! TATTTGAGTATTGTTGGTGT+TGG - chr4.3:66826354-66826373 MS.gene93924:intron 30.0%
! TGGTATTTTACTATGATTGC+AGG - chr4.3:66824999-66825018 MS.gene93924:intron 30.0%
!! ACATTCTGAAAGTATCTTGA+AGG - chr4.3:66824510-66824529 MS.gene93924:CDS 30.0%
!! ACTCCAAACAAAAAGTATTG+AGG + chr4.3:66826249-66826268 None:intergenic 30.0%
!! ATAAAATTGATTTGGTGGCT+GGG + chr4.3:66823547-66823566 None:intergenic 30.0%
!! ATTCTGAAAGTATCTTGAAG+GGG - chr4.3:66824512-66824531 MS.gene93924:CDS 30.0%
!! CATTCTGAAAGTATCTTGAA+GGG - chr4.3:66824511-66824530 MS.gene93924:CDS 30.0%
!! GATTTTGAAGAAGAATGTGA+TGG - chr4.3:66825248-66825267 MS.gene93924:intron 30.0%
!! GTTCCTCAATACTTTTTGTT+TGG - chr4.3:66826243-66826262 MS.gene93924:intron 30.0%
!! TATAAAATTGATTTGGTGGC+TGG + chr4.3:66823548-66823567 None:intergenic 30.0%
!!! AGTTTCTGAGGTTTTTACTA+TGG - chr4.3:66826266-66826285 MS.gene93924:intron 30.0%
!!! GCTTTGATTGTTTTTTTGCT+TGG - chr4.3:66825113-66825132 MS.gene93924:intron 30.0%
!!! TTGTTTTTTTGCTTGGAACA+AGG - chr4.3:66825120-66825139 MS.gene93924:intron 30.0%
AAACCTTGTGTTCAAGCTTT+CGG - chr4.3:66824912-66824931 MS.gene93924:CDS 35.0%
AAGAGTCCCTTTCTTAGAAT+TGG - chr4.3:66825173-66825192 MS.gene93924:intron 35.0%
ACGAATATGTGCTCATAGAT+AGG + chr4.3:66826030-66826049 None:intergenic 35.0%
ACTGAGGAGAACAATATGTA+AGG + chr4.3:66824833-66824852 None:intergenic 35.0%
ATCACAATGCTTCAACGAAT+TGG - chr4.3:66826087-66826106 MS.gene93924:intron 35.0%
ATGGAGAGAACAATATTTCC+TGG - chr4.3:66825943-66825962 MS.gene93924:CDS 35.0%
ATTAGTTGGGTTCTTGGATT+TGG - chr4.3:66825065-66825084 MS.gene93924:intron 35.0%
CAACTGTTCCAATGAGTATA+TGG - chr4.3:66826214-66826233 MS.gene93924:intron 35.0%
CCATGCTTCTTAGTTCATTT+GGG + chr4.3:66826323-66826342 None:intergenic 35.0%
CGAATATGTGCTCATAGATA+GGG + chr4.3:66826029-66826048 None:intergenic 35.0%
CGACATATCATTCATTAGCA+AGG + chr4.3:66823400-66823419 None:intergenic 35.0%
CGATGATCATTACAACACAA+GGG + chr4.3:66825094-66825113 None:intergenic 35.0%
CTAAAAATAGCACAAGAGCA+TGG - chr4.3:66826171-66826190 MS.gene93924:intron 35.0%
CTGAGGAGAACAATATGTAA+GGG + chr4.3:66824832-66824851 None:intergenic 35.0%
CTTCGCTTCAAACGATAAAA+TGG - chr4.3:66825983-66826002 MS.gene93924:CDS 35.0%
GAAGCTCATTCTTTAATTGG+TGG - chr4.3:66824979-66824998 MS.gene93924:intron 35.0%
GAGAACAATATGTAAGGGAA+GGG + chr4.3:66824827-66824846 None:intergenic 35.0%
GATAACATTAGTTGGGTTCT+TGG - chr4.3:66825059-66825078 MS.gene93924:intron 35.0%
GCTACAAGTTTCATCTTCTT+TGG + chr4.3:66825803-66825822 None:intergenic 35.0%
GCTCAATTAGCTATTGTTGA+TGG - chr4.3:66823190-66823209 MS.gene93924:CDS 35.0%
TATCTTAACACTGTCTTCCA+TGG - chr4.3:66824649-66824668 MS.gene93924:CDS 35.0%
TGTACCTATGATAAACCAAG+CGG + chr4.3:66823272-66823291 None:intergenic 35.0%
TTACATTCTTCACCAAGCAA+GGG - chr4.3:66825914-66825933 MS.gene93924:CDS 35.0%
TTCAAAATCCGTCGTTGATA+AGG + chr4.3:66825237-66825256 None:intergenic 35.0%
TTGTTGCGGCTATAAGAAAT+TGG - chr4.3:66825204-66825223 MS.gene93924:intron 35.0%
TTTACATTCTTCACCAAGCA+AGG - chr4.3:66825913-66825932 MS.gene93924:CDS 35.0%
! ACACGACCAATTCTAAGAAA+GGG + chr4.3:66825182-66825201 None:intergenic 35.0%
! AGGAGAAATTTTCGGTATCA+TGG - chr4.3:66823971-66823990 MS.gene93924:intron 35.0%
! ATTTTCGGTATCATGGAGTT+TGG - chr4.3:66823978-66823997 MS.gene93924:intron 35.0%
! CCAAATGAACTAAGAAGCAT+GGG - chr4.3:66826321-66826340 MS.gene93924:intron 35.0%
! GCACTCTATTTGAGTATTGT+TGG - chr4.3:66826348-66826367 MS.gene93924:intron 35.0%
! TCTAAGGTTGGTTCCAATTT+GGG - chr4.3:66825852-66825871 MS.gene93924:intron 35.0%
! TTTAGAGCTCAGTTAGTGTT+TGG - chr4.3:66825438-66825457 MS.gene93924:intron 35.0%
! TTTATCGTTTGAAGCGAAGA+GGG + chr4.3:66825982-66826001 None:intergenic 35.0%
!! AGGTTGGTTTGATAAAGAGT+TGG - chr4.3:66823329-66823348 MS.gene93924:CDS 35.0%
!! CTTTTTGTTTGGAGTTTCTG+AGG - chr4.3:66826254-66826273 MS.gene93924:intron 35.0%
!! GGAATTAGTTTGAGTTGGTT+AGG + chr4.3:66825681-66825700 None:intergenic 35.0%
!! GGCGTAAAAATTCAAGTTGT+TGG + chr4.3:66823932-66823951 None:intergenic 35.0%
!! TCTGAGGTTTTTACTATGGT+TGG - chr4.3:66826270-66826289 MS.gene93924:intron 35.0%
!! TTCTAAGGTTGGTTCCAATT+TGG - chr4.3:66825851-66825870 MS.gene93924:intron 35.0%
!! TTTTATCGTTTGAAGCGAAG+AGG + chr4.3:66825983-66826002 None:intergenic 35.0%
!!! CATGTTTTGATGTTGGTCAT+TGG - chr4.3:66824752-66824771 MS.gene93924:CDS 35.0%
!!! TACTTTTATTGGTTCCTTGC+TGG - chr4.3:66826480-66826499 MS.gene93924:CDS 35.0%
!!! TAGAGACACTTTTAGTTTGG+TGG - chr4.3:66824321-66824340 MS.gene93924:intron 35.0%
!!! TTCGTTGCTGATTCTTTTCT+TGG - chr4.3:66823795-66823814 MS.gene93924:CDS 35.0%
!!! TTTTACTATGGTTGGTCTTC+AGG - chr4.3:66826278-66826297 MS.gene93924:intron 35.0%
AACCTTGTGTTCAAGCTTTC+GGG - chr4.3:66824913-66824932 MS.gene93924:CDS 40.0%
AAGAAGCTAAGGCTGTTCTA+AGG - chr4.3:66825836-66825855 MS.gene93924:intron 40.0%
AATTGGTCGTGTCTTTGTTG+CGG - chr4.3:66825190-66825209 MS.gene93924:intron 40.0%
ACCAAAGTTGAAGCCCAAAT+TGG + chr4.3:66825868-66825887 None:intergenic 40.0%
ACCAACCACCATATACTCAT+TGG + chr4.3:66826225-66826244 None:intergenic 40.0%
ACTACTAGATTCAAACCCCA+AGG + chr4.3:66824147-66824166 None:intergenic 40.0%
AGATCCGCTTGGTTTATCAT+AGG - chr4.3:66823265-66823284 MS.gene93924:CDS 40.0%
CCCAAATGAACTAAGAAGCA+TGG - chr4.3:66826320-66826339 MS.gene93924:intron 40.0%
CCCATGCTTCTTAGTTCATT+TGG + chr4.3:66826324-66826343 None:intergenic 40.0%
CTCATTGGAACAGTTGCATT+TGG + chr4.3:66826210-66826229 None:intergenic 40.0%
CTGTTCCAATGAGTATATGG+TGG - chr4.3:66826217-66826236 MS.gene93924:intron 40.0%
GATGCAAGCTAGATGCAAAT+GGG + chr4.3:66824550-66824569 None:intergenic 40.0%
GCAAAGATGATCGTGAAAGT+TGG - chr4.3:66826424-66826443 MS.gene93924:intron 40.0%
GCGATGATCATTACAACACA+AGG + chr4.3:66825095-66825114 None:intergenic 40.0%
GGAGAACAATATGTAAGGGA+AGG + chr4.3:66824828-66824847 None:intergenic 40.0%
GGATCTCCAATAACCAGATT+CGG + chr4.3:66823251-66823270 None:intergenic 40.0%
TATCTAGTTGCCATTGGACA+AGG - chr4.3:66824882-66824901 MS.gene93924:CDS 40.0%
TCACTCTATCTAGTTGCCAT+TGG - chr4.3:66824876-66824895 MS.gene93924:CDS 40.0%
TCATCTTCTTTGGATCCCTT+TGG + chr4.3:66825793-66825812 None:intergenic 40.0%
TCCAATGAGTATATGGTGGT+TGG - chr4.3:66826221-66826240 MS.gene93924:intron 40.0%
TCCAATTTGGGCTTCAACTT+TGG - chr4.3:66825864-66825883 MS.gene93924:intron 40.0%
TGCTTGGAACAAGGACATAT+AGG - chr4.3:66825129-66825148 MS.gene93924:intron 40.0%
TGTCAATATTTGGTCCGGAA+CGG - chr4.3:66823746-66823765 MS.gene93924:CDS 40.0%
TTAGGTCCGAATCTGGTTAT+TGG - chr4.3:66823242-66823261 MS.gene93924:CDS 40.0%
! GACACGACCAATTCTAAGAA+AGG + chr4.3:66825183-66825202 None:intergenic 40.0%
! TGAAACTTGTAGCCTTAGTG+AGG - chr4.3:66825810-66825829 MS.gene93924:intron 40.0%
! TGGGCTTCAACTTTGGTTTA+TGG - chr4.3:66825871-66825890 MS.gene93924:intron 40.0%
!!! GTGTGCTCATGTTTTGATGT+TGG - chr4.3:66824745-66824764 MS.gene93924:CDS 40.0%
!!! GTTTTGTTTAGGTGTCGAAG+TGG - chr4.3:66823632-66823651 MS.gene93924:CDS 40.0%
AAACGTCCGGAATTTGCACT+GGG + chr4.3:66824209-66824228 None:intergenic 45.0%
ACCTTGTGTTCAAGCTTTCG+GGG - chr4.3:66824914-66824933 MS.gene93924:CDS 45.0%
AGCTTCTAACAGCACTTCGT+TGG + chr4.3:66823173-66823192 None:intergenic 45.0%
ATCCTAGGTAGAGCTCAACA+AGG - chr4.3:66825559-66825578 MS.gene93924:intron 45.0%
ATGCTTCAACGAATTGGCAC+TGG - chr4.3:66826093-66826112 MS.gene93924:intron 45.0%
CATTAGCAAGGTCTTAGCAC+CGG + chr4.3:66823388-66823407 None:intergenic 45.0%
CATTGGCAGCTTCCTTAACA+AGG - chr4.3:66825756-66825775 MS.gene93924:intron 45.0%
CCACTAGCAAGAGTTATCAC+CGG - chr4.3:66826051-66826070 MS.gene93924:CDS 45.0%
CTTGCTGGATTAAGTGTGGT+GGG - chr4.3:66826495-66826514 MS.gene93924:CDS 45.0%
GGATGCAAGCTAGATGCAAA+TGG + chr4.3:66824551-66824570 None:intergenic 45.0%
GGGCTGTCCTTTGTAATCAA+CGG + chr4.3:66823218-66823237 None:intergenic 45.0%
GTTCCTTGCTGGATTAAGTG+TGG - chr4.3:66826491-66826510 MS.gene93924:CDS 45.0%
TAAACGTCCGGAATTTGCAC+TGG + chr4.3:66824210-66824229 None:intergenic 45.0%
TAGCTTCTTCCACCTCACTA+AGG + chr4.3:66825825-66825844 None:intergenic 45.0%
TAGTGAGGTGGAAGAAGCTA+AGG - chr4.3:66825825-66825844 MS.gene93924:intron 45.0%
TAGTTGCCATTGGACAAGGT+GGG - chr4.3:66824886-66824905 MS.gene93924:CDS 45.0%
TTCCTTGTTGAGCTCTACCT+AGG + chr4.3:66825564-66825583 None:intergenic 45.0%
TTTATGCCCACCTTGTCCAA+TGG + chr4.3:66824895-66824914 None:intergenic 45.0%
! AACTTGTAGCCTTAGTGAGG+TGG - chr4.3:66825813-66825832 MS.gene93924:intron 45.0%
! CATCTAGCTTGCATCCAAAC+TGG - chr4.3:66824555-66824574 MS.gene93924:CDS 45.0%
! CTTCTAGCTGTGTGCTCTTT+AGG + chr4.3:66824963-66824982 None:intergenic 45.0%
! GCGAAGTACCTTATCAACGA+CGG - chr4.3:66825226-66825245 MS.gene93924:intron 45.0%
! GGTGTTGGAAGCTTTCTAAG+TGG - chr4.3:66826369-66826388 MS.gene93924:intron 45.0%
! GTGTTAGCAGTGCCTTGTTA+AGG + chr4.3:66825771-66825790 None:intergenic 45.0%
! TCGATTTGTCTCCACCAGTT+TGG + chr4.3:66824572-66824591 None:intergenic 45.0%
!! AAGGCACTGCTAACACCAAA+GGG - chr4.3:66825775-66825794 MS.gene93924:intron 45.0%
!! AGCTAAGGCTGTTCTAAGGT+TGG - chr4.3:66825840-66825859 MS.gene93924:intron 45.0%
!! GCGGAGAGGGTATCATATTA+TGG - chr4.3:66823654-66823673 MS.gene93924:CDS 45.0%
!! GTTGCAGTGCTTTGTTTGAG+TGG + chr4.3:66823714-66823733 None:intergenic 45.0%
!! TGAAGCATTGTGATGCCTGA+GGG + chr4.3:66826081-66826100 None:intergenic 45.0%
!! TTGAAGCATTGTGATGCCTG+AGG + chr4.3:66826082-66826101 None:intergenic 45.0%
!! TTGTTTAGGTGTCGAAGTGG+CGG - chr4.3:66823635-66823654 MS.gene93924:CDS 45.0%
AAGCACCTAAGAGAGGAAGG+AGG + chr4.3:66823776-66823795 None:intergenic 50.0%
AATCTAGTAGTCCGAGTCCG+AGG - chr4.3:66824156-66824175 MS.gene93924:intron 50.0%
ACCAGATTCGGACCTAACTG+CGG + chr4.3:66823239-66823258 None:intergenic 50.0%
AGCACCTAAGAGAGGAAGGA+GGG + chr4.3:66823775-66823794 None:intergenic 50.0%
AGTTGCCAGTTGCATCCTTG+GGG - chr4.3:66824129-66824148 MS.gene93924:intron 50.0%
ATGTCGCCCAGTGCAAATTC+CGG - chr4.3:66824200-66824219 MS.gene93924:intron 50.0%
CACCAAGCAAGGGACTTCAA+TGG - chr4.3:66825924-66825943 MS.gene93924:CDS 50.0%
CAGTTGCCAGTTGCATCCTT+GGG - chr4.3:66824128-66824147 MS.gene93924:intron 50.0%
CCACCACACTTAATCCAGCA+AGG + chr4.3:66826497-66826516 None:intergenic 50.0%
CCGGTGATAACTCTTGCTAG+TGG + chr4.3:66826054-66826073 None:intergenic 50.0%
CCTTGCTGGATTAAGTGTGG+TGG - chr4.3:66826494-66826513 MS.gene93924:CDS 50.0%
CTAGTTGCCATTGGACAAGG+TGG - chr4.3:66824885-66824904 MS.gene93924:CDS 50.0%
CTCCATTGAAGTCCCTTGCT+TGG + chr4.3:66825929-66825948 None:intergenic 50.0%
CTGGTTATTGGAGATCCGCT+TGG - chr4.3:66823254-66823273 MS.gene93924:CDS 50.0%
GTTATCACCGGAAAACCCTC+AGG - chr4.3:66826063-66826082 MS.gene93924:CDS 50.0%
TCAAACCCCAAGGATGCAAC+TGG + chr4.3:66824137-66824156 None:intergenic 50.0%
TGTCACCATTACCTCGGACT+CGG + chr4.3:66824170-66824189 None:intergenic 50.0%
TTGTGTTCAAGCTTTCGGGG+CGG - chr4.3:66824917-66824936 MS.gene93924:CDS 50.0%
! ATCGTTTGAAGCGAAGAGGG+AGG + chr4.3:66825979-66825998 None:intergenic 50.0%
! CTAGCTTGCATCCAAACTGG+TGG - chr4.3:66824558-66824577 MS.gene93924:CDS 50.0%
! GAGGGAGGTATGTCAAATCC+AGG + chr4.3:66825964-66825983 None:intergenic 50.0%
! GATGGCGCCGTTGATTACAA+AGG - chr4.3:66823208-66823227 MS.gene93924:CDS 50.0%
! TGTGATGCCTGAGGGTTTTC+CGG + chr4.3:66826073-66826092 None:intergenic 50.0%
! TTTGGTGGCTGGGATGAGAA+AGG + chr4.3:66823537-66823556 None:intergenic 50.0%
!! CAAGGCACTGCTAACACCAA+AGG - chr4.3:66825774-66825793 MS.gene93924:intron 50.0%
!! CGAAAGCACCTAAGAGAGGA+AGG + chr4.3:66823779-66823798 None:intergenic 50.0%
!! GCAACGAAAGCACCTAAGAG+AGG + chr4.3:66823783-66823802 None:intergenic 50.0%
!! GTCTGGTGTCACCATTACCT+CGG + chr4.3:66824176-66824195 None:intergenic 50.0%
ACAAAGGACAGCCCGCAGTT+AGG - chr4.3:66823224-66823243 MS.gene93924:CDS 55.0%
CACTGGGCGACATGTTAGTC+TGG + chr4.3:66824193-66824212 None:intergenic 55.0%
CCAGATTCGGACCTAACTGC+GGG + chr4.3:66823238-66823257 None:intergenic 55.0%
GCAGTTGCCAGTTGCATCCT+TGG - chr4.3:66824127-66824146 MS.gene93924:intron 55.0%
GCCCCGAAAGCTTGAACACA+AGG + chr4.3:66824918-66824937 None:intergenic 55.0%
GCGGATTCAACTTCTGCCAC+CGG - chr4.3:66823366-66823385 MS.gene93924:CDS 55.0%
GCTTCCCTCCTTCCTCTCTT+AGG - chr4.3:66823768-66823787 MS.gene93924:CDS 55.0%
GTAGTCCGAGTCCGAGGTAA+TGG - chr4.3:66824162-66824181 MS.gene93924:intron 55.0%
! TAGCAAGGTCTTAGCACCGG+TGG + chr4.3:66823385-66823404 None:intergenic 55.0%
AGAAGTTGAATCCGCGCGCG+GGG + chr4.3:66823361-66823380 None:intergenic 60.0%
AGGAAGGAGGGAAGCCGTTC+CGG + chr4.3:66823763-66823782 None:intergenic 60.0%
CAGAAGTTGAATCCGCGCGC+GGG + chr4.3:66823362-66823381 None:intergenic 60.0%
CCCGCAGTTAGGTCCGAATC+TGG - chr4.3:66823235-66823254 MS.gene93924:CDS 60.0%
GCAGAAGTTGAATCCGCGCG+CGG + chr4.3:66823363-66823382 None:intergenic 60.0%
!! AGGTGTCGAAGTGGCGGAGA+GGG - chr4.3:66823641-66823660 MS.gene93924:CDS 60.0%
!! TAGGTGTCGAAGTGGCGGAG+AGG - chr4.3:66823640-66823659 MS.gene93924:CDS 60.0%
GTTGGTCAATACCCCGCGCG+CGG - chr4.3:66823347-66823366 MS.gene93924:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 66823160 66826581 66823160 ID=MS.gene93924
chr4.3 mRNA 66823160 66826581 66823160 ID=MS.gene93924.t1;Parent=MS.gene93924
chr4.3 exon 66826455 66826581 66826455 ID=MS.gene93924.t1.exon1;Parent=MS.gene93924.t1
chr4.3 CDS 66826455 66826581 66826455 ID=cds.MS.gene93924.t1;Parent=MS.gene93924.t1
chr4.3 exon 66825881 66826098 66825881 ID=MS.gene93924.t1.exon2;Parent=MS.gene93924.t1
chr4.3 CDS 66825881 66826098 66825881 ID=cds.MS.gene93924.t1;Parent=MS.gene93924.t1
chr4.3 exon 66824438 66824949 66824438 ID=MS.gene93924.t1.exon3;Parent=MS.gene93924.t1
chr4.3 CDS 66824438 66824949 66824438 ID=cds.MS.gene93924.t1;Parent=MS.gene93924.t1
chr4.3 exon 66823160 66823976 66823160 ID=MS.gene93924.t1.exon4;Parent=MS.gene93924.t1
chr4.3 CDS 66823160 66823976 66823160 ID=cds.MS.gene93924.t1;Parent=MS.gene93924.t1
Gene Sequence

>MS.gene93924

ATGGCAGAATCCAACGAAGTGCTGTTAGAAGCTCAATTAGCTATTGTTGATGGCGCCGTTGATTACAAAGGACAGCCCGCAGTTAGGTCCGAATCTGGTTATTGGAGATCCGCTTGGTTTATCATAGGTACACATTTTCAGTACTGATTTGTTTTTATCATAATAATTAAGGTTGGTTTGATAAAGAGTTGGTCAATACCCCGCGCGCGGATTCAACTTCTGCCACCGGTGCTAAGACCTTGCTAATGAATGATATGTCGCTCTAAATATCAGTGTCAGCACTCTTTTTGAACCTTTAGTTTTGGTTTGACTATGATGAACTTTCGAAACCCTATCTAGCTAAACTTTTTACTAAAAAAAGCTCTACTTCTTAACCTTTCTCATCCCAGCCACCAAATCAATTTTATATCTCTTTCTGCAGCTCAATTACTTTCTTTTTAAATGGTGATGAGAATTGGAATGAATTATGAATGTTTTGTTTAGGTGTCGAAGTGGCGGAGAGGGTATCATATTATGGAATTCAAGGGAACTTGATATCATATCTAACAGGACCACTCAAACAAAGCACTGCAACAGCTGCTAAGAATGTCAATATTTGGTCCGGAACGGCTTCCCTCCTTCCTCTCTTAGGTGCTTTCGTTGCTGATTCTTTTCTTGGACGCTATCGAACAATCATACTTGCTTCTCTTATCTATATATTGGTTAGTTCAGTTCGTCTCTTTTATTTTTGTCTCTTCAATTTTTACACTCTAAAATGAATGGCTTCTCTCCAACAACTTGAATTTTTACGCCATAGTTAATGGTTCATTTTAGGAGAAATTTTCGGTATCATGGAGTTTGGATGAGAACTTTTATTTTGGTGATTTCTACTCATTTTTTTGTTGTGCTACCATCAGTCAAAATTAATTCTTTTATTAATTTAGTTTAAAATAATTACTATAAAAAAGTTACATGACATTATACGACAGCAGTTGCCAGTTGCATCCTTGGGGTTTGAATCTAGTAGTCCGAGTCCGAGGTAATGGTGACACCAGACTAACATGTCGCCCAGTGCAAATTCCGGACGTTTAACATATATAACATTTCAATTTATTTCAATTTACCAGAATTACATAGAAAGTTCTCTCTCTTAACTAAATGACACAAGTTTCTTTATACATATAGAGACACTTTTAGTTTGGTGGCTGAAACAGAAGACAAAAATCATGATTTCTTGACTCAAAATTATATGCCAAAATTATTTTAGAATCATTTCTTTTATGCTTCGTGCACGAGATTAATTGAGAGAATTTTTTTTTCTGTAAAATTCTATTGATCGATACTATTGATTTGAGTGTGCGATTCAAATCAACATTCTGAAAGTATCTTGAAGGGGATTCACTAGTTACCCATTTGCATCTAGCTTGCATCCAAACTGGTGGAGACAAATCGAACATAAAGCTTAGTGTCTTCACACACCATTTCGAATTTATTTGTGCAACCATCATCATATCTTAACACTGTCTTCCATGGTTTTTGCTAATCTTTCTATCTTTCATTATTTTGATGTATGATATATTAAAAAAATGGATAGACAGATAGTTATGTGTGCTCATGTTTTGATGTTGGTCATTGGCTTAATACAATTTACAGGGACTAGGCTTGTTAACACTATCAGCTTTGCTCCCTTCCCTTACATATTGTTCTCCTCAGTCACAAGTAATCTTATTCTTCGTCTCACTCTATCTAGTTGCCATTGGACAAGGTGGGCATAAACCTTGTGTTCAAGCTTTCGGGGCGGATCAATTCGATGAAAAACATCCTAAAGAGCACACAGCTAGAAGCTCATTCTTTAATTGGTGGTATTTTACTATGATTGCAGGTTGCACAACAACACTTACAATCTTGAACTATATACAAGATAACATTAGTTGGGTTCTTGGATTTGGAATCCCTTGTGTTGTAATGATCATCGCTTTGATTGTTTTTTTGCTTGGAACAAGGACATATAGGTTTAACATTAAGGATAATGACAAGAGTCCCTTTCTTAGAATTGGTCGTGTCTTTGTTGCGGCTATAAGAAATTGGCGAAGTACCTTATCAACGACGGATTTTGAAGAAGAATGTGATGGACTACTTCGCAGTCAAAGTTCTGAACAATTCAAGTAAGAATAACAATGCTAACTTATTCTTGTTTTTTAATGTTATGTCTATTAAGTTCAATCTTATTAGTAGCATTCTGAAAGAAGAAAATATGATGAATTACATTATAAGAAACTACCTTCTAAGTGTTAATTACTTTAGAGCTCAGTTAGTGTTTGGAATTGAATCTTCTGTTAATATGTATTTTCTTGTATTGATTCATCTGCTTATTTCAATGTATTGGTTCATCTACAATTATTGTACATTATTAATGTTTCATCCTAGGTAGAGCTCAACAAGGAATAAAATAAATTGAGAGAAAGATTGATTATTTGGAATTTGATTACAATACGTGTTGGATACCTTTTATATTGTGATCATAACAAAACTAACAAATCCTAACCAACTCAAACTAATTCCAATAAATTAAAACACTGAAAGATTATGACAATTTTGACTTAGCTTGTAATTTCTACATTGGCAGCTTCCTTAACAAGGCACTGCTAACACCAAAGGGATCCAAAGAAGATGAAACTTGTAGCCTTAGTGAGGTGGAAGAAGCTAAGGCTGTTCTAAGGTTGGTTCCAATTTGGGCTTCAACTTTGGTTTATGGTATTGTCTTTGCTCAAGTTTTTACATTCTTCACCAAGCAAGGGACTTCAATGGAGAGAACAATATTTCCTGGATTTGACATACCTCCCTCTTCGCTTCAAACGATAAAATGGCTTGCAATTGTTCTCTTCTGCCCTATCTATGAGCACATATTCGTGCCACTAGCAAGAGTTATCACCGGAAAACCCTCAGGCATCACAATGCTTCAACGAATTGGCACTGGAATTTTTATATCAATATTCATGGTAGTATTTGCAGCCTTTGTTGAGATGAAAAGACTAAAAATAGCACAAGAGCATGGTCTTGTTGATGATCCAAATGCAACTGTTCCAATGAGTATATGGTGGTTGGTTCCTCAATACTTTTTGTTTGGAGTTTCTGAGGTTTTTACTATGGTTGGTCTTCAGGAATTTTTCTATGATCAAGTCCCAAATGAACTAAGAAGCATGGGACTTGCACTCTATTTGAGTATTGTTGGTGTTGGAAGCTTTCTAAGTGGCTTTCTCATTTCTTTGATAGAATATTTTAGCGGCAAAGATGATCGTGAAAGTTGGTTTTGTGACAATATCAATAAAGCACATTTTGATTACTTTTATTGGTTCCTTGCTGGATTAAGTGTGGTGGGATTTACTTTGTTCATTTACTTTGCAAAATCATACATTTATAATCACAAAGGCACTACCACATAA

Protein sequence

>MS.gene93924.t1

MAESNEVLLEAQLAIVDGAVDYKGQPAVRSESGYWRSAWFIIGVEVAERVSYYGIQGNLISYLTGPLKQSTATAAKNVNIWSGTASLLPLLGAFVADSFLGRYRTIILASLIYILGLGLLTLSALLPSLTYCSPQSQVILFFVSLYLVAIGQGGHKPCVQAFGADQFDEKHPKEHTARSSFFNWWYFTMIAGCTTTLTILNYIQDNISWVLGFGIPCVVMIIALIVFLLGTRTYRFNIKDNDKSPFLRIGRVFVAAIRNWRSTLSTTDFEEECDGLLRSQSSEQFNFLNKALLTPKGSKEDETCSLSEVEEAKAVLRLVPIWASTLVYGIVFAQVFTFFTKQGTSMERTIFPGFDIPPSSLQTIKWLAIVLFCPIYEHIFVPLARVITGKPSGITMLQRIGTGIFISIFMVVFAAFVEMKRLKIAQEHGLVDDPNATVPMSIWWLVPQYFLFGVSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIVGVGSFLSGFLISLIEYFSGKDDRESWFCDNINKAHFDYFYWFLAGLSVVGFTLFIYFAKSYIYNHKGTTT