AlfalfaGEDB | MS.gene48611

M. sativa cultivar XinJiangDaYe / MS.gene48611

KEGG: K14638
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0022857 GO:0042886 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0110165
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48611.t1	XP_013455275.1	93	559	39	0	1	559	1	559	6.40E-303	1049.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48611.t1	Q0WP01	64.5	547	182	2	10	549	9	550	1.6e-201	703.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48611.t1	A0A072UI11	93.0	559	39	0	1	559	1	559	4.6e-303	1049.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene00573	MS.gene48611	PPI
MS.gene028748	MS.gene48611	PPI
MS.gene034782	MS.gene48611	PPI
MS.gene037668	MS.gene48611	PPI
MS.gene042632	MS.gene48611	PPI
MS.gene047248	MS.gene48611	PPI
MS.gene21160	MS.gene48611	PPI
MS.gene42840	MS.gene48611	PPI
MS.gene45440	MS.gene48611	PPI
MS.gene46070	MS.gene48611	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene48611.t1	MTR_4g033315	93.023	559	39	0	1	559	1	559	1055
MS.gene48611.t1	MTR_4g033310	93.023	559	39	0	1	559	1	559	1055
MS.gene48611.t1	MTR_0294s0020	88.014	559	65	1	1	559	1	557	992
MS.gene48611.t1	MTR_4g033325	86.786	560	70	2	1	559	1	557	992
MS.gene48611.t1	MTR_4g033330	91.745	533	44	0	1	533	1	533	979
MS.gene48611.t1	MTR_4g033395	86.546	498	65	2	1	496	1	498	892
MS.gene48611.t1	MTR_4g033375	85.341	498	71	2	1	496	1	498	878
MS.gene48611.t1	MTR_4g033385	86.292	445	60	1	116	559	16	460	810
MS.gene48611.t1	MTR_4g033325	86.517	445	56	2	116	559	18	459	807
MS.gene48611.t1	MTR_4g033325	86.239	436	56	2	125	559	1	433	790

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48611.t1	AT1G22540	64.014	553	187	2	10	555	9	556	0.0	686
MS.gene48611.t1	AT1G72125	58.140	559	225	6	1	552	1	557	0.0	624
MS.gene48611.t1	AT1G72120	58.645	561	215	10	1	552	1	553	0.0	612
MS.gene48611.t1	AT1G72140	56.000	550	212	5	16	551	19	552	0.0	609
MS.gene48611.t1	AT1G22550	55.124	566	221	6	10	552	5	560	0.0	592
MS.gene48611.t1	AT1G22570	55.496	564	223	7	10	552	5	561	0.0	580
MS.gene48611.t1	AT1G22570	55.303	528	212	6	42	552	4	524	0.0	544
MS.gene48611.t1	AT1G72130	53.645	535	220	8	29	555	23	537	0.0	538
MS.gene48611.t1	AT3G54450	44.751	543	269	8	29	551	11	542	1.13e-169	493
MS.gene48611.t1	AT5G01180	40.592	574	309	8	1	552	1	564	1.14e-153	452

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Find 119 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTGTTCAAGCTTT+CGG	0.279638	4.1:-67023395	MS.gene48611:CDS
AACCTTGTGTTCAAGCTTTC+GGG	0.149446	4.1:-67023394	MS.gene48611:CDS
AACTTGATATCATATCTAAC+AGG	0.443273	4.1:-67023825	MS.gene48611:CDS
AACTTGTTGCCTTAGTGAGG+TGG	0.612554	4.1:-67022028	MS.gene48611:CDS
AAGAAGCTAAGGCTGTTCTA+AGG	0.485876	4.1:-67022005	MS.gene48611:CDS
AAGGCATTGCTAACACCAAA+GGG	0.459300	4.1:-67022066	MS.gene48611:CDS
AATAAGATTACTTGTGACTC+AGG	0.512491	4.1:+67023461	None:intergenic
ACAAATATGCGGTCATAGAT+GGG	0.427180	4.1:+67021814	None:intergenic
ACACGAGCAATTCTAAGAAA+GGG	0.526584	4.1:+67023128	None:intergenic
ACAGAGGACAGCCCGCAATT+AGG	0.431958	4.1:-67025156	MS.gene48611:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAACTAAACCACCAAAT+TGG	+	chr4.1:67022359-67022378	None:intergenic	30.0%
AATAAGATTACTTGTGACTC+AGG	+	chr4.1:67023038-67023057	None:intergenic	30.0%
ACAGACTAATGAAACAGTAA+AGG	+	chr4.1:67022078-67022097	None:intergenic	30.0%
AGCTTGATTACATTGAGTAT+TGG	-	chr4.1:67024231-67024250	MS.gene48611:intron	30.0%
ATCACAATGCTTCAAAGAAT+TGG	-	chr4.1:67024742-67024761	MS.gene48611:intron	30.0%
CATTATTAATGGTTCATCCT+AGG	-	chr4.1:67024141-67024160	MS.gene48611:intron	30.0%
CTAAAAATAGCACAAGATCA+TGG	-	chr4.1:67024826-67024845	MS.gene48611:intron	30.0%
CTAGAAGCTCATTCTTTAAT+TGG	-	chr4.1:67023165-67023184	MS.gene48611:CDS	30.0%
GACATATAGGTTTAGCATTA+AGG	-	chr4.1:67023331-67023350	MS.gene48611:CDS	30.0%
TAAGCATATGAATCGATACA+AGG	+	chr4.1:67024088-67024107	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	67021276	67025242	67021276	ID=MS.gene48611
chr4.1	mRNA	67021276	67025242	67021276	ID=MS.gene48611.t1;Parent=MS.gene48611
chr4.1	exon	67025116	67025242	67025116	ID=MS.gene48611.t1.exon1;Parent=MS.gene48611.t1
chr4.1	CDS	67025116	67025242	67025116	ID=cds.MS.gene48611.t1;Parent=MS.gene48611.t1
chr4.1	exon	67023674	67023891	67023674	ID=MS.gene48611.t1.exon2;Parent=MS.gene48611.t1
chr4.1	CDS	67023674	67023891	67023674	ID=cds.MS.gene48611.t1;Parent=MS.gene48611.t1
chr4.1	exon	67023026	67023537	67023026	ID=MS.gene48611.t1.exon3;Parent=MS.gene48611.t1
chr4.1	CDS	67023026	67023537	67023026	ID=cds.MS.gene48611.t1;Parent=MS.gene48611.t1
chr4.1	exon	67021276	67022098	67021276	ID=MS.gene48611.t1.exon4;Parent=MS.gene48611.t1
chr4.1	CDS	67021276	67022098	67021276	ID=cds.MS.gene48611.t1;Parent=MS.gene48611.t1

Gene Sequence

>MS.gene48611

ATGGAAGAATCCAACGAAGTGTTGTTAGAAGCTGAATTAGCTCTTGTTGATGGCGCCGTTGACTACAGAGGACAGCCCGCAATTAGGTCCAAATCTGGTTACTGGAGATCCGCTTGGTTTATCATTGGTACACAATTTCATATCTTTATGCAAAACTGATTTTTTATTTTTTTAATATTTTGTTAGTAAATCTTAACATTACAATTGCAATGTAAGTGAGAATGTGTTTTTGATTTTCTTACTGGTAAACCACCAAATTGATCATGTCTCTGTAAGCCACTCTCAAATTAGTGTGGTCGAGTAGTAAGAGGAAAGAGGTCACCCGAGCTATCACATCTCATTAACGACATTCCTGTCTGAAGATCCTTTACAAACAAACCAAATGGATCAAATTCAACAGAAACTTCATTGTCAATGATAAATTTTCAAAGAGAAACAAGGTTTTTGAGTATTTTAGGTGCATATAGGCCATGATTCGAAGTTAAGGGAGTTTGGGAATTAGGTAATAATGAATTGGTAGGGTTAGTTGGCAAAGGAGAAATGATGGGTGAGGTAGAAGTGTGGAGAATAAAAAGTTGTCGTGGATTGAAAATGCCATGTTGAGCTCGGGTGGTCATTTGAGGAGATAATGGAGGATTGGCTAGAGACGAAGTAGGTGTGGGGAGAGTAGGAGGGGAGGGGGTCGTTTTTTGGTGGTGGCCGGGGTTTGTCCATACCAACTGAGCTAAGCTCACGAGGACGGAGGGGAGGGGGTGTTAGAGATAGGGGTTTAGGCTCTGATACCATGAAATAATTGTTTCCTTTACTGTTTCATTAGTCTGTAATGTGTATTTATACAATGATGTTGTCTTGGGCACCAAGTATGTCTAATTTCGGCCTCAGTTATCTCTAACTAATATACAATATACTAATAATTTATACAATAAATATTTTATATTCTAATAATTTCAATCTAATCTCTATCACATGATAGATACTAACCGAGGGACTTAATTGAGAATCGTTCGACAAAGACAAATGCTATTTTGAAATATTAGCAGAGTTGGCGATTAATTTGAGAGTAGCTTACAGCCATAAGGACCAATTTGGTGGTTTAGTTAGTTTCTTATCATTTTACTCGTTAACTCTTTCGTTTAAGTGGTTAATTTTTTTTTTTAGGCTTGAATTAATCTGTTTTACTCATCAACTCACAAAAGTTGATGTATTTGGTTCAAGTATAAATTTTGAATTAAATACGTCAATTTTTGTTGACCCAAGTGTTTCTTTTATTTAAGACAGGAACAGTACATGTTTATTTTAAATTTTTTAAAATGTTATGAGGATTGAAATGAGTTAAGAATGTTTTGTTTAGGTGTGGAAGTGGCAGAGAGGGTATCATATTATGGAATTCAAGGGAACTTGATATCATATCTAACAGGATCACTCAAACAAAGCACTGCAACTGCTGCTGAGAATGTGAATATCTGGGCTGGAGCTGCTTCTCTCCTTCCTCTCTTTGGTGCTTTTGTTGCTGATTCTTTTCTTGGACGCTATCGCACAATCATAGTTGCTTCTCTTATCTATATCTTGGTCAGTATTGTTGTTACTTAATATGACATCCAAAGACTTGAATTTTTCTTCTTCTGTACATATTAGTATTAGATATACAGATAGCTCTATTGGTTTATTGTTTTGATGTTGGTCATTGGCTTAATATGAAATACAGGGACTAGGCTTGTTAACGTTATCAGCTTTGCTTCCTTCCCTCACATTTTGTTCTCCTGAGTCACAAGTAATCTTATTTTTCATCTCACTCTATTTAGTTGCCATTGGACAAGGTGGACATAAACCTTGTGTTCAAGCTTTCGGGGCGGATCAATTCGACGAAAAACATCCTAAGGAGCATAGAGCTAGAAGCTCATTCTTTAATTGGTGGTATTTTACTATGATTGCAGGATGCACATCAATACTTACAATCTTGAACTATATACAAGATAACATTAGTTGGGTTCTTGGATTTGGAATCCCTTGTGTCGTAATGATCATTGCTTTGGTTGTTTTTTTGCTTGGAACAAGGACATATAGGTTTAGCATTAAGGATAATGACAAGAGTCCCTTTCTTAGAATTGCTCGTGTATTTGTAGTGTCTGTAAGAAATTGGCGAAATACCTTATCAACGACGGACTTTGAAGAGGAATGTGATGGACTACTTCGCCGTCAAAGTTCTGAACAATTCAAGTAAGAATAACGATGCTAATTTATTCAATTTTACAAAATCCATTCATATCAAATCAATTTATTTGCCACTGAACCAAACACACTTGTTTTTTCAATGTTATGTCTATTAAGTTCAATCTTATTAGTAGCATTCTATGATGAAATATTACAGTCATGTGTTGCATTGCATTCTATGATAGAATCCACTATGATTCCACCCGGATAAAACCATTGCTTCTTATCCATATAATCAATGGATTTGATCGTAATCTCTTGGTTATAAATAACACGGTTGAGAGTAATTTCTTTCAAGCTTACTTATTCACTCAATCTACCTATTTATTATTCTCTGAGAATTATATGTTGTTACGTAGTTATTTCTTTTACATGGTAGATTGTTAGAATCAACTCTAAAAAAATATATTTTCTTTTAACACAATATCATTATTTTGACTTGAGAGGCTTGGAGTAGAATAATGCTTGGTGAGGTTGTAAATTTGAGGAAAGGTTTTCCTAAAATACACTATCAACTCCCTTCGTATATTTCCATGTGGTTAGTTAAACCTCTTCTATGTTGACTGTTTGGAATTGAATCTTTTGTCTATATGTATTTCCTTGTATCGATTCATATGCTTATTTTAATGTATTGGTTCATCTACAATTATAGTACATTATTAATGGTTCATCCTAGGTAAAGCTCAACAAAGAAAAAAATAAATTGTCAGAAAGATTGATTATTTGGATTTGATAGAATGAGAAAGCTTGATTACATTGAGTATTGGATACCTTTTATATAGTTATCATAACAAACTAATAAATCTTAACTAACTTACAATTAATTATGACCAGCTTATAACTACCTATAACCAACTCCAACTAATTCTAACAAAGTAAAACCTTGAAAAATAATGACTATTTTGACTTAGCTTGTAATTTCTACATTGGCAGCTTCCTTAACAAGGCATTGCTAACACCAAAGGGGTCCAAAGAAGATGAAACTTGTTGCCTTAGTGAGGTGGAAGAAGCTAAGGCTGTTCTAAGGTTGGTTCCAATTTGGGCTACAACTTTGGTTTATGGTATTGTCTTTGCTCAAGTTTTTACATTCTTTACCAAGCAAGGGAGATCAATGGAGAGAACAATATTTCCTGGATTTGACATACCTCCTGCTTCGCTTCAATCGATTAACGGGCTTGCAATTCTTCTCTTCAGCCCCATCTATGACCGCATATTTGTGCCGCTAGCAAGAGTTATCACCGGAAAACCCTCTGGCATCACAATGCTTCAAAGAATTGGCACTGGAATTTTTATATCGATATTCACGGTAGTATTTGCAGCCTTTGTTGAGATGAAAAGACTAAAAATAGCACAAGATCATGGTCTTGTTGATGATCCAAATGCAACTGTTCCAATGAGTATATGGTGGCTGGTTCCTCAATACTTTTTGTTTGGAATTTCTGAGGTTTTTACTATGGTTGGTCTTCAAGAATTTTTCTACGATCAAGTCCCAAATGAACTAAGAAGCATGGGACTTGCACTCTATTTGAGTATTGTTGGTGTTGGAAGCTTTCTAAGTGGCTTTCTCATTTCTTTGATAGAAAACTTTAGTGGCAAAGATGGTCATGAAAGTTGGTTTTGTGACAATATCAATAAGGCACATTTTGATTACTTTTATTGGTTGCTTGCTGGATTAAGTGTCATGGGGTTTACTTTGTTCATTTACTTTGCAAAATCTTACATTTATAATCACAAAGGCACTATCACACAAGGATAG

Protein sequence

>MS.gene48611.t1

MEESNEVLLEAELALVDGAVDYRGQPAIRSKSGYWRSAWFIIGVEVAERVSYYGIQGNLISYLTGSLKQSTATAAENVNIWAGAASLLPLFGAFVADSFLGRYRTIIVASLIYILGLGLLTLSALLPSLTFCSPESQVILFFISLYLVAIGQGGHKPCVQAFGADQFDEKHPKEHRARSSFFNWWYFTMIAGCTSILTILNYIQDNISWVLGFGIPCVVMIIALVVFLLGTRTYRFSIKDNDKSPFLRIARVFVVSVRNWRNTLSTTDFEEECDGLLRRQSSEQFNFLNKALLTPKGSKEDETCCLSEVEEAKAVLRLVPIWATTLVYGIVFAQVFTFFTKQGRSMERTIFPGFDIPPASLQSINGLAILLFSPIYDRIFVPLARVITGKPSGITMLQRIGTGIFISIFTVVFAAFVEMKRLKIAQDHGLVDDPNATVPMSIWWLVPQYFLFGISEVFTMVGLQEFFYDQVPNELRSMGLALYLSIVGVGSFLSGFLISLIENFSGKDGHESWFCDNINKAHFDYFYWLLAGLSVMGFTLFIYFAKSYIYNHKGTITQG