AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043570.t1 MTR_2g093160 86.909 550 57 3 1 536 1 549 0.0 942
MS.gene043570.t1 MTR_2g093180 84.029 551 72 4 1 536 1 550 0.0 877
MS.gene043570.t1 MTR_2g093640 80.909 550 90 3 1 536 1 549 0.0 871
MS.gene043570.t1 MTR_4g107530 35.424 542 311 8 24 535 50 582 1.00e-103 324
MS.gene043570.t1 MTR_4g107580 34.737 570 324 13 4 534 13 573 7.61e-101 317
MS.gene043570.t1 MTR_4g107510 35.165 546 309 11 24 536 53 586 1.34e-100 316
MS.gene043570.t1 MTR_5g038060 35.405 531 318 8 26 534 50 577 8.07e-100 314
MS.gene043570.t1 MTR_8g469480 34.848 528 321 8 30 536 61 586 2.27e-98 310
MS.gene043570.t1 MTR_3g112460 34.043 517 315 8 30 532 46 550 2.77e-93 296
MS.gene043570.t1 MTR_7g088825 31.915 564 345 13 2 534 10 565 9.01e-92 293
MS.gene043570.t1 MTR_5g055000 33.081 529 325 8 30 536 41 562 1.47e-91 292
MS.gene043570.t1 MTR_4g101380 34.608 549 314 12 19 535 39 574 5.51e-91 290
MS.gene043570.t1 MTR_4g011280 33.776 527 312 12 30 531 55 569 3.76e-90 288
MS.gene043570.t1 MTR_7g067010 31.083 563 351 9 2 536 10 563 9.79e-90 286
MS.gene043570.t1 MTR_4g107610 32.348 541 338 8 7 524 27 562 2.76e-89 286
MS.gene043570.t1 MTR_3g462710 31.712 555 343 11 7 535 20 564 3.35e-89 285
MS.gene043570.t1 MTR_3g112470 31.949 554 342 9 2 532 9 550 5.88e-89 285
MS.gene043570.t1 MTR_2g101590 32.675 557 327 14 11 531 21 565 6.75e-89 286
MS.gene043570.t1 MTR_2g101610 32.379 559 330 14 9 531 20 566 1.95e-88 285
MS.gene043570.t1 MTR_5g012290 33.155 561 330 13 10 535 21 571 9.46e-88 282
MS.gene043570.t1 MTR_8g469470 33.333 537 326 11 26 535 51 582 1.44e-87 281
MS.gene043570.t1 MTR_2g101650 34.046 561 322 15 13 536 19 568 2.10e-87 281
MS.gene043570.t1 MTR_4g015080 31.127 559 347 11 4 536 27 573 8.58e-87 279
MS.gene043570.t1 MTR_5g012270 31.843 559 334 11 13 535 26 573 6.04e-86 277
MS.gene043570.t1 MTR_4g114340 33.759 548 324 10 13 532 21 557 2.27e-85 275
MS.gene043570.t1 MTR_2g101560 32.857 560 326 13 9 531 20 566 1.81e-84 275
MS.gene043570.t1 MTR_5g038190 29.787 564 359 12 2 534 11 568 2.59e-84 273
MS.gene043570.t1 MTR_2g101640 32.286 573 335 15 1 531 1 562 2.64e-84 274
MS.gene043570.t1 MTR_1g057460 32.740 562 323 15 3 531 25 564 3.59e-84 272
MS.gene043570.t1 MTR_7g088820 31.879 527 331 10 30 534 48 568 3.96e-84 273
MS.gene043570.t1 MTR_7g088790 31.150 565 352 11 1 534 14 572 6.76e-84 273
MS.gene043570.t1 MTR_8g103233 32.379 559 331 15 8 531 7 553 2.67e-83 270
MS.gene043570.t1 MTR_3g069500 33.333 519 320 12 30 536 58 562 4.14e-83 270
MS.gene043570.t1 MTR_1g057460 33.010 515 305 12 35 531 1 493 8.81e-82 264
MS.gene043570.t1 MTR_1g026740 32.642 530 309 17 22 521 32 543 1.98e-80 262
MS.gene043570.t1 MTR_1g042310 29.485 563 357 10 2 534 12 564 1.31e-79 261
MS.gene043570.t1 MTR_4g033325 34.340 530 291 14 30 535 54 550 2.43e-79 259
MS.gene043570.t1 MTR_7g065080 31.862 521 327 9 30 536 54 560 2.51e-79 259
MS.gene043570.t1 MTR_7g098040 28.463 527 344 9 30 534 57 572 3.61e-79 260
MS.gene043570.t1 MTR_1g009200 32.710 535 319 11 24 531 44 564 3.69e-79 259
MS.gene043570.t1 MTR_3g112450 32.432 518 324 10 30 532 46 552 5.49e-79 258
MS.gene043570.t1 MTR_3g462710 32.613 463 280 10 95 535 3 455 8.51e-79 255
MS.gene043570.t1 MTR_4g019580 32.190 525 326 10 30 536 59 571 1.10e-78 258
MS.gene043570.t1 MTR_1g042310 29.848 526 338 9 30 534 5 520 1.70e-78 256
MS.gene043570.t1 MTR_1g042310 29.848 526 338 9 30 534 12 527 2.04e-78 256
MS.gene043570.t1 MTR_3g069440 32.008 528 325 9 30 536 56 570 2.25e-78 257
MS.gene043570.t1 MTR_7g098200 29.831 533 331 9 30 535 52 568 3.00e-78 257
MS.gene043570.t1 MTR_7g088820 31.361 507 320 10 50 534 6 506 3.24e-78 255
MS.gene043570.t1 MTR_7g098220 30.389 566 352 10 2 536 16 570 3.37e-78 257
MS.gene043570.t1 MTR_7g098220 30.726 537 323 10 30 536 9 526 3.98e-78 256
MS.gene043570.t1 MTR_3g014790 30.458 568 324 12 9 535 11 548 5.41e-78 256
MS.gene043570.t1 MTR_7g098160 29.346 535 329 11 30 534 56 571 9.97e-78 256
MS.gene043570.t1 MTR_7g098200 29.924 528 327 9 30 535 52 558 2.21e-77 255
MS.gene043570.t1 MTR_7g098180 30.189 530 336 10 30 536 54 572 3.25e-77 254
MS.gene043570.t1 MTR_7g064780 31.685 546 343 9 8 525 18 561 3.57e-77 254
MS.gene043570.t1 MTR_1g026750 32.710 535 322 13 22 531 33 554 4.83e-77 253
MS.gene043570.t1 MTR_7g098090 29.511 532 337 10 30 534 56 576 6.92e-77 254
MS.gene043570.t1 MTR_5g014150 30.973 565 350 12 1 532 29 586 1.24e-76 253
MS.gene043570.t1 MTR_1g075440 29.123 570 350 10 2 534 14 566 1.68e-76 253
MS.gene043570.t1 MTR_2g093650 69.681 188 14 2 325 512 34 178 7.42e-76 239
MS.gene043570.t1 MTR_1g041875 28.492 537 351 8 2 515 15 541 8.87e-76 250
MS.gene043570.t1 MTR_0236s0050 31.845 515 311 12 35 531 1 493 1.08e-75 248
MS.gene043570.t1 MTR_0294s0020 33.270 529 298 11 30 535 54 550 1.34e-75 249
MS.gene043570.t1 MTR_7g065080 31.687 486 304 9 65 536 2 473 2.24e-75 247
MS.gene043570.t1 MTR_7g005930 30.309 518 338 8 30 532 58 567 3.10e-75 249
MS.gene043570.t1 MTR_7g098230 28.518 533 338 9 30 535 49 565 5.42e-75 248
MS.gene043570.t1 MTR_4g098800 31.262 531 334 12 30 535 59 583 1.14e-74 248
MS.gene043570.t1 MTR_1g026770 31.391 532 328 15 24 531 32 550 1.50e-74 246
MS.gene043570.t1 MTR_4g098800 31.262 531 334 12 30 535 124 648 4.51e-74 248
MS.gene043570.t1 MTR_3g072300 30.511 567 347 13 2 535 10 562 9.91e-74 245
MS.gene043570.t1 MTR_4g033315 30.688 567 331 13 1 535 16 552 3.36e-73 243
MS.gene043570.t1 MTR_4g033310 30.688 567 331 13 1 535 16 552 3.36e-73 243
MS.gene043570.t1 MTR_1g041885 28.486 502 335 7 30 517 5 496 1.23e-72 241
MS.gene043570.t1 MTR_4g033330 32.742 507 288 11 30 513 54 530 2.37e-72 240
MS.gene043570.t1 MTR_5g085850 30.203 543 345 12 13 534 27 556 6.99e-72 240
MS.gene043570.t1 MTR_1g041815 28.873 568 353 10 2 534 13 564 7.47e-72 240
MS.gene043570.t1 MTR_7g013270 29.348 552 362 9 1 532 81 624 1.25e-71 241
MS.gene043570.t1 MTR_1g116930 29.537 562 346 11 8 536 15 559 3.76e-71 238
MS.gene043570.t1 MTR_3g069420 31.439 528 328 10 30 536 57 571 4.85e-71 238
MS.gene043570.t1 MTR_7g088820 31.373 459 287 10 98 534 6 458 1.42e-70 234
MS.gene043570.t1 MTR_7g010820 30.070 572 349 11 1 533 11 570 1.88e-70 236
MS.gene043570.t1 MTR_1g041835 27.817 568 359 10 2 534 13 564 2.11e-70 236
MS.gene043570.t1 MTR_4g033375 32.094 511 288 11 1 483 17 496 3.70e-70 233
MS.gene043570.t1 MTR_7g064800 30.943 530 341 8 24 528 43 572 3.98e-70 236
MS.gene043570.t1 MTR_5g038380 28.076 577 355 14 2 534 14 574 1.17e-69 234
MS.gene043570.t1 MTR_3g100980 29.002 531 328 12 34 536 43 552 1.43e-69 233
MS.gene043570.t1 MTR_4g033395 33.053 475 266 11 30 484 55 497 2.17e-69 231
MS.gene043570.t1 MTR_8g038880 30.912 537 314 11 30 536 43 552 2.41e-69 233
MS.gene043570.t1 MTR_2g005130 29.301 529 344 7 19 534 52 563 3.37e-69 233
MS.gene043570.t1 MTR_4g033325 34.081 446 247 13 114 535 4 426 3.96e-68 226
MS.gene043570.t1 MTR_4g033325 33.761 468 253 14 92 535 18 452 5.62e-68 226
MS.gene043570.t1 MTR_3g005010 30.377 530 307 12 30 535 53 544 1.19e-67 228
MS.gene043570.t1 MTR_2g017750 28.571 560 354 12 16 534 34 588 1.35e-67 229
MS.gene043570.t1 MTR_8g469310 28.142 565 355 14 9 534 19 571 6.24e-67 227
MS.gene043570.t1 MTR_7g098200 29.915 468 285 9 95 535 3 454 1.44e-66 223
MS.gene043570.t1 MTR_7g111260 27.965 565 352 14 7 535 2 547 1.51e-64 221
MS.gene043570.t1 MTR_4g107670 27.226 584 354 15 2 535 10 572 7.77e-64 218
MS.gene043570.t1 MTR_3g100980 28.086 559 325 14 34 536 43 580 1.36e-63 218
MS.gene043570.t1 MTR_7g098150 29.730 407 266 6 30 427 56 451 3.94e-63 214
MS.gene043570.t1 MTR_4g033385 32.658 444 251 11 118 535 32 453 4.31e-63 213
MS.gene043570.t1 MTR_8g087780 26.795 571 379 10 1 534 6 574 3.09e-62 214
MS.gene043570.t1 MTR_4g123537 28.090 534 352 10 19 535 53 571 1.06e-61 214
MS.gene043570.t1 MTR_8g087810 28.322 572 370 11 1 534 6 575 1.25e-61 213
MS.gene043570.t1 MTR_1g085090 27.322 549 354 13 14 535 17 547 5.53e-60 209
MS.gene043570.t1 MTR_8g091265 70.992 131 33 2 276 401 3 133 1.26e-54 181
MS.gene043570.t1 MTR_7g006540 27.094 561 362 14 13 534 60 612 7.91e-54 192
MS.gene043570.t1 MTR_7g098210 26.908 524 280 11 30 535 5 443 3.78e-48 173
MS.gene043570.t1 MTR_4g024930 26.512 562 352 15 2 532 22 553 1.59e-46 171
MS.gene043570.t1 MTR_7g051880 25.323 541 351 11 10 531 19 525 1.01e-45 168
MS.gene043570.t1 MTR_6g008690 24.399 541 336 12 30 532 30 535 5.36e-45 166
MS.gene043570.t1 MTR_7g051830 24.399 541 356 10 10 531 19 525 1.09e-44 165
MS.gene043570.t1 MTR_7g052600 24.954 541 353 11 10 531 19 525 1.84e-43 162
MS.gene043570.t1 MTR_1g009170 27.114 402 224 11 135 517 9 360 1.00e-34 135
MS.gene043570.t1 MTR_4g033310 28.391 317 193 7 235 535 190 488 3.03e-33 132
MS.gene043570.t1 MTR_4g033310 32.275 189 102 5 1 175 16 192 7.45e-15 77.4
MS.gene043570.t1 MTR_8g091275 63.889 72 25 1 183 253 1 72 7.31e-26 101
MS.gene043570.t1 MTR_8g091480 66.667 57 14 1 219 275 38 89 9.04e-16 80.9
MS.gene043570.t1 MTR_3g065350 32.692 156 95 5 317 466 1 152 3.45e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043570.t1 AT3G45660 49.727 549 245 6 6 536 30 565 0.0 545
MS.gene043570.t1 AT3G45660 49.727 549 245 6 6 536 9 544 0.0 545
MS.gene043570.t1 AT3G45660 49.727 549 245 6 6 536 9 544 0.0 545
MS.gene043570.t1 AT3G45650 50.272 551 245 6 2 536 8 545 0.0 544
MS.gene043570.t1 AT3G45650 48.180 577 244 7 2 536 8 571 0.0 530
MS.gene043570.t1 AT3G45710 46.875 544 275 4 2 536 8 546 0.0 523
MS.gene043570.t1 AT3G45680 49.153 531 256 4 15 536 19 544 5.13e-180 518
MS.gene043570.t1 AT3G45700 48.023 531 256 5 15 536 15 534 3.94e-176 508
MS.gene043570.t1 AT3G45720 44.610 538 283 4 8 536 11 542 2.55e-166 483
MS.gene043570.t1 AT3G45690 44.898 539 242 10 7 536 9 501 5.35e-152 445
MS.gene043570.t1 AT1G69870 36.166 553 320 9 11 534 46 594 3.12e-109 339
MS.gene043570.t1 AT1G18880 35.875 577 313 12 4 536 5 568 5.23e-105 327
MS.gene043570.t1 AT3G47960 35.229 545 305 11 24 534 78 608 3.45e-100 316
MS.gene043570.t1 AT5G62680 34.011 541 319 9 24 534 60 592 4.09e-95 302
MS.gene043570.t1 AT1G27080 33.333 525 329 8 24 534 31 548 2.47e-93 296
MS.gene043570.t1 AT2G26690 34.426 549 324 11 10 532 18 556 5.93e-93 295
MS.gene043570.t1 AT2G26690 35.115 524 313 10 26 532 10 523 7.91e-92 291
MS.gene043570.t1 AT5G01180 31.261 563 351 10 2 536 11 565 1.28e-91 291
MS.gene043570.t1 AT5G01180 31.261 563 351 10 2 536 11 565 1.28e-91 291
MS.gene043570.t1 AT5G01180 31.261 563 351 10 2 536 11 565 1.28e-91 291
MS.gene043570.t1 AT2G26690 35.192 520 310 10 30 532 2 511 1.58e-91 290
MS.gene043570.t1 AT3G16180 32.959 534 324 11 24 531 40 565 1.15e-90 290
MS.gene043570.t1 AT3G54140 31.408 554 350 10 4 534 17 563 3.32e-90 288
MS.gene043570.t1 AT3G54140 31.408 554 350 10 4 534 17 563 3.32e-90 288
MS.gene043570.t1 AT1G27080 33.138 513 322 8 36 534 1 506 3.51e-90 287
MS.gene043570.t1 AT1G52190 31.858 565 337 14 7 531 10 566 4.82e-90 288
MS.gene043570.t1 AT1G62200 33.395 542 330 11 8 527 49 581 4.66e-89 285
MS.gene043570.t1 AT1G68570 34.405 529 321 8 30 536 16 540 4.05e-88 282
MS.gene043570.t1 AT1G68570 34.405 529 321 8 30 536 46 570 6.60e-88 283
MS.gene043570.t1 AT1G62200 32.281 570 328 13 8 527 49 610 1.90e-84 274
MS.gene043570.t1 AT1G62200 32.281 570 328 13 8 527 63 624 2.18e-84 275
MS.gene043570.t1 AT5G28470 31.321 530 340 11 24 535 34 557 7.27e-81 263
MS.gene043570.t1 AT3G54450 29.026 534 328 8 30 536 35 544 1.13e-80 263
MS.gene043570.t1 AT5G28470 30.492 528 345 9 24 535 34 555 2.43e-79 259
MS.gene043570.t1 AT2G02040 30.171 527 341 8 30 536 64 583 6.13e-79 259
MS.gene043570.t1 AT5G46040 31.225 506 318 7 30 515 50 545 1.47e-78 258
MS.gene043570.t1 AT3G21670 32.721 544 333 13 13 534 26 558 5.64e-78 256
MS.gene043570.t1 AT2G02020 30.813 529 296 10 30 536 65 545 8.54e-77 252
MS.gene043570.t1 AT1G12110 31.295 556 346 10 10 535 21 570 1.29e-75 250
MS.gene043570.t1 AT1G69860 30.000 560 357 10 1 535 1 550 1.94e-73 243
MS.gene043570.t1 AT1G32450 30.551 563 356 12 2 532 23 582 2.63e-73 244
MS.gene043570.t1 AT1G27040 29.517 559 342 12 9 533 20 560 5.37e-73 243
MS.gene043570.t1 AT1G27040 29.517 559 342 12 9 533 16 556 5.98e-73 242
MS.gene043570.t1 AT3G53960 30.114 528 336 11 30 536 60 575 8.97e-73 243
MS.gene043570.t1 AT1G27040 30.038 526 325 11 33 533 21 528 3.28e-72 239
MS.gene043570.t1 AT5G46050 29.681 502 321 9 30 510 50 540 1.24e-71 239
MS.gene043570.t1 AT2G40460 30.712 534 318 12 30 535 47 556 7.49e-71 237
MS.gene043570.t1 AT4G21680 30.885 531 331 13 30 533 51 572 1.34e-70 237
MS.gene043570.t1 AT2G37900 30.192 520 338 10 30 536 61 568 1.39e-70 236
MS.gene043570.t1 AT1G69850 31.041 567 339 14 14 536 23 581 2.11e-70 236
MS.gene043570.t1 AT5G19640 28.460 513 345 8 30 532 82 582 7.25e-70 235
MS.gene043570.t1 AT1G33440 30.492 528 342 8 19 531 50 567 7.65e-70 235
MS.gene043570.t1 AT2G37900 29.741 501 327 10 49 536 1 489 1.24e-67 226
MS.gene043570.t1 AT1G59740 28.336 547 354 9 10 528 35 571 1.30e-66 226
MS.gene043570.t1 AT1G72125 30.896 547 320 13 19 536 41 558 3.58e-66 224
MS.gene043570.t1 AT5G46050 30.206 437 275 7 94 510 2 428 2.46e-64 217
MS.gene043570.t1 AT1G22550 29.650 543 334 9 19 536 42 561 4.63e-64 219
MS.gene043570.t1 AT1G22570 30.859 512 299 12 30 512 16 501 1.17e-63 217
MS.gene043570.t1 AT1G22570 30.859 512 299 12 30 512 53 538 1.97e-63 217
MS.gene043570.t1 AT1G72140 28.119 537 315 11 30 535 57 553 2.46e-63 217
MS.gene043570.t1 AT1G22540 31.499 527 306 11 30 531 53 549 5.75e-63 216
MS.gene043570.t1 AT1G72130 30.460 522 308 11 30 533 48 532 1.60e-62 214
MS.gene043570.t1 AT1G72120 30.150 534 315 10 30 536 52 554 6.76e-60 207
MS.gene043570.t1 AT3G25260 27.290 513 313 6 34 531 48 515 7.35e-57 198
MS.gene043570.t1 AT5G62730 26.758 583 340 12 2 535 42 586 1.90e-56 199
MS.gene043570.t1 AT5G62730 27.306 542 316 11 34 535 24 527 1.11e-55 196
MS.gene043570.t1 AT1G72130 30.485 433 257 9 119 533 8 414 1.82e-55 192
MS.gene043570.t1 AT1G72130 30.485 433 257 9 119 533 8 414 1.82e-55 192
MS.gene043570.t1 AT5G14940 26.888 543 324 13 30 532 30 539 1.42e-54 193
MS.gene043570.t1 AT5G13400 26.297 559 367 13 15 536 63 613 7.18e-51 184
MS.gene043570.t1 AT5G11570 27.553 519 281 13 30 531 36 476 2.89e-47 172
MS.gene043570.t1 AT3G25280 25.098 510 334 8 34 531 48 521 4.67e-45 166
MS.gene043570.t1 AT3G01350 24.909 550 327 9 30 527 30 545 1.33e-44 166
MS.gene043570.t1 AT2G02020 32.599 227 145 2 30 251 65 288 2.43e-32 130
MS.gene043570.t1 AT2G02020 33.945 218 122 7 336 536 312 524 1.73e-26 113
MS.gene043570.t1 AT2G38100 25.524 525 323 16 35 533 2 484 5.57e-30 123
MS.gene043570.t1 AT2G38100 25.524 525 323 16 35 533 18 500 9.30e-30 123
MS.gene043570.t1 AT2G38100 25.524 525 323 16 35 533 24 506 1.31e-29 122

Find 103 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTACATTGAGGATAATT+TGG 0.105611 2.2:+7398536 MS.gene043570:CDS
CGGAGGAATTGTGGGAAATT+TGG 0.175787 2.2:+7397939 MS.gene043570:CDS
ATCGTTGCTGATTCTTTCTT+TGG 0.186929 2.2:+7398063 MS.gene043570:CDS
GATAATTTGGGTTGGGCATT+GGG 0.193597 2.2:+7398549 MS.gene043570:CDS
TTCACATTCTATGTTGCTTC+TGG 0.199343 2.2:+7398495 MS.gene043570:CDS
TTCTTCTTGTGTTGCTTTGC+TGG 0.209226 2.2:+7398107 MS.gene043570:CDS
TTGGGTTGGGCATTGGGGTT+TGG 0.235536 2.2:+7398555 MS.gene043570:CDS
TTCTTCTGGTCATGATGTTT+TGG 0.260860 2.2:+7398752 MS.gene043570:CDS
CCAGGTTGGCATAAGATTAC+TGG 0.280111 2.2:+7399359 MS.gene043570:CDS
GCTACAAGGAAGTGCAGTTT+TGG 0.285342 2.2:+7398650 MS.gene043570:CDS
GTCCTAATATCAATTGGTTT+TGG 0.302104 2.2:+7398387 MS.gene043570:CDS
CAATGATTTCAATGATTATA+GGG 0.302871 2.2:+7399627 MS.gene043570:CDS
GGATAATTTGGGTTGGGCAT+TGG 0.304178 2.2:+7398548 MS.gene043570:CDS
GCAATGATTTCAATGATTAT+AGG 0.313595 2.2:+7399626 MS.gene043570:CDS
GATTACTACGGTAGTTCTTC+TGG 0.315848 2.2:+7398738 MS.gene043570:CDS
GTCAAGAAATGTGAGGAAAA+TGG 0.324649 2.2:-7399324 None:intergenic
ATTTACATTGAGGATAATTT+GGG 0.326688 2.2:+7398537 MS.gene043570:CDS
CAATTAGTGTTGGTTGGTAT+TGG 0.327167 2.2:+7399527 MS.gene043570:CDS
TTAGTCATGGATCGTTCTTT+AGG 0.329015 2.2:+7399245 MS.gene043570:CDS
CACCAAAACCAATTGATATT+AGG 0.344369 2.2:-7398389 None:intergenic
TACTGGATGTTAGTAGTGTT+TGG 0.345072 2.2:+7399746 MS.gene043570:CDS
TTGCCATGATTTATTTCATC+AGG 0.374654 2.2:-7399710 None:intergenic
CAGATTGTAAACATTGTTAT+CGG 0.381247 2.2:+7398009 MS.gene043570:CDS
TAACACCGGGAAAAGGATTA+AGG 0.383763 2.2:+7398793 MS.gene043570:CDS
GGACATGTGTTGACTGTTCT+TGG 0.383903 2.2:+7399416 MS.gene043570:CDS
GAAGTACTGCCAAGCTACTT+TGG 0.393641 2.2:-7399217 None:intergenic
CATTGAGGATAATTTGGGTT+GGG 0.403562 2.2:+7398542 MS.gene043570:CDS
AAGCTACTTTGGATTGCTAT+AGG 0.409382 2.2:-7399206 None:intergenic
AGCATAGTCCTAATATCAAT+TGG 0.421222 2.2:+7398381 MS.gene043570:CDS
CTTGACAGGGTGCTATTGCC+AGG 0.421420 2.2:+7399341 MS.gene043570:CDS
ACGTTTCAATGTCTGTGTTA+TGG 0.425106 2.2:+7399495 MS.gene043570:CDS
TAATTAGAATCCTACCACTT+TGG 0.426440 2.2:+7399159 MS.gene043570:CDS
GCTTCTGGAGCTGCATTCAC+TGG 0.428108 2.2:+7398510 MS.gene043570:CDS
GGATTGCTATAGGAGTTGAT+AGG 0.442808 2.2:-7399196 None:intergenic
CCTATGCCGCTTCAACGAAT+AGG 0.444488 2.2:+7399389 MS.gene043570:CDS
GGTTAAATAGGTATGGTAGC+AGG 0.446679 2.2:+7397901 MS.gene043570:intron
TAATAGAATGTAACTTGTCC+TGG 0.454723 2.2:-7399566 None:intergenic
TTATATATAGAACTGTGTAT+TGG 0.469265 2.2:-7398359 None:intergenic
ATAATTTGGGTTGGGCATTG+GGG 0.469339 2.2:+7398550 MS.gene043570:CDS
CACTGGAATTATTTACATTG+AGG 0.469878 2.2:+7398527 MS.gene043570:CDS
ATTACATGCAAGCCACCTAC+TGG 0.472106 2.2:+7398333 MS.gene043570:CDS
AATCAGTACTCCTACGAACT+TGG 0.476238 2.2:-7399682 None:intergenic
CCTATTCGTTGAAGCGGCAT+AGG 0.476519 2.2:-7399389 None:intergenic
TTTCCACAATTAGTGTTGGT+TGG 0.482453 2.2:+7399521 MS.gene043570:CDS
CCAGTAATCTTATGCCAACC+TGG 0.485407 2.2:-7399359 None:intergenic
CCTCCGCTAACACCGGGAAA+AGG 0.486201 2.2:+7398786 MS.gene043570:CDS
CGTTTCACTGCAGCATCACT+AGG 0.490573 2.2:+7398417 MS.gene043570:CDS
ACAGGGTGCTATTGCCAGGT+TGG 0.495314 2.2:+7399345 MS.gene043570:CDS
CTTGGAAGCGGAGGAATTGT+GGG 0.495498 2.2:+7397931 MS.gene043570:CDS
TCAAGAAATGTGAGGAAAAT+GGG 0.497572 2.2:-7399323 None:intergenic
ATGACAGAAACAGAACTAGC+TGG 0.499461 2.2:-7399284 None:intergenic
ACTTGGAAGCGGAGGAATTG+TGG 0.504054 2.2:+7397930 MS.gene043570:CDS
TACACTCAGATGGCTCAGTT+AGG 0.509635 2.2:+7399084 MS.gene043570:CDS
AACAATTTCCACAATCACTT+AGG 0.511803 2.2:+7399591 MS.gene043570:CDS
TTGTTGCATCTGTTCGTAAG+TGG 0.518784 2.2:+7398688 MS.gene043570:CDS
TGTGTTGACTGTTCTTGGCA+TGG 0.519665 2.2:+7399421 MS.gene043570:CDS
ATGGTAGCAGGGTCGTCACT+TGG 0.529743 2.2:+7397913 MS.gene043570:CDS
TTACCTGATGAAATAAATCA+TGG 0.531630 2.2:+7399707 MS.gene043570:CDS
AAGCATCAATCTATTTCCAC+TGG 0.532384 2.2:+7398032 MS.gene043570:CDS
GTTGTTTCCACAATTAGTGT+TGG 0.534629 2.2:+7399517 MS.gene043570:CDS
ACATTGAGGATAATTTGGGT+TGG 0.535748 2.2:+7398541 MS.gene043570:CDS
ATACCAACCAACACTAATTG+TGG 0.537554 2.2:-7399524 None:intergenic
TATCGGGCTGAAAAGCTACA+AGG 0.546688 2.2:+7398636 MS.gene043570:CDS
GCAAGGTTGATAATGTGTAC+TGG 0.547549 2.2:+7399729 MS.gene043570:CDS
TTTCCTCACATTTCTTGACA+GGG 0.548202 2.2:+7399328 MS.gene043570:CDS
TATAGCAATCCAAAGTAGCT+TGG 0.554810 2.2:+7399208 MS.gene043570:CDS
AAGTTCGTAGGAGTACTGAT+TGG 0.558833 2.2:+7399684 MS.gene043570:CDS
AGTGCTGCCTCCGCTAACAC+CGG 0.566712 2.2:+7398779 MS.gene043570:CDS
ACCGTAGTAATCCTCTACTC+TGG 0.575276 2.2:-7398727 None:intergenic
TGGATGTTAGTAGTGTTTGG+AGG 0.575496 2.2:+7399749 MS.gene043570:CDS
GCAGGGTCGTCACTTGGAAG+CGG 0.575760 2.2:+7397919 MS.gene043570:CDS
GAATCATTGCTACATGGATG+AGG 0.577520 2.2:-7398306 None:intergenic
GTGCTGCCTCCGCTAACACC+GGG 0.585063 2.2:+7398780 MS.gene043570:CDS
GCAACGATTGCGGCAACCAG+TGG 0.585741 2.2:-7398048 None:intergenic
TAACTGAGCCATCTGAGTGT+AGG 0.589021 2.2:-7399082 None:intergenic
TGACAGAAACAGAACTAGCT+GGG 0.591074 2.2:-7399283 None:intergenic
GTTAAATAGGTATGGTAGCA+GGG 0.599124 2.2:+7397902 MS.gene043570:intron
TGCAAGTGTGCAACAATGGA+TGG 0.601310 2.2:+7397375 None:intergenic
TGATGAAATAAATCATGGCA+AGG 0.602512 2.2:+7399712 MS.gene043570:CDS
CCTACTCCTATTCGTTGAAG+CGG 0.605706 2.2:-7399395 None:intergenic
CTTTAATCGACCAAGTTCGT+AGG 0.606772 2.2:+7399672 MS.gene043570:CDS
GAAAGAATCAGCAACGATTG+CGG 0.609321 2.2:-7398058 None:intergenic
TAAGCTCTCATCCAGAGTAG+AGG 0.611738 2.2:+7398716 MS.gene043570:CDS
TTTGACAAACTAGAACATCA+AGG 0.611836 2.2:+7398450 MS.gene043570:CDS
CCGCTTCAACGAATAGGAGT+AGG 0.614584 2.2:+7399395 MS.gene043570:CDS
GGGTCGTCACTTGGAAGCGG+AGG 0.621705 2.2:+7397922 MS.gene043570:CDS
AGTACTTCAAGCTTTAGTCA+TGG 0.624431 2.2:+7399232 MS.gene043570:CDS
GCTGTGCACACTTCAACAAG+TGG 0.625265 2.2:+7399121 MS.gene043570:CDS
GAAACAGATGAGAGCAAGCG+TGG 0.625532 2.2:+7397420 MS.gene043570:CDS
GATGCAGACCTACACTCAGA+TGG 0.626629 2.2:+7399074 MS.gene043570:CDS
GCTCAGTTAGGAAATCATCA+TGG 0.632715 2.2:+7399096 MS.gene043570:CDS
ATGAATGAATCATTGCTACA+TGG 0.633109 2.2:-7398312 None:intergenic
GTGTATTGGATTCCAGTAGG+TGG 0.634548 2.2:-7398345 None:intergenic
TCCAGAGTAGAGGATTACTA+CGG 0.638838 2.2:+7398726 MS.gene043570:CDS
ACTGTGTATTGGATTCCAGT+AGG 0.641176 2.2:-7398348 None:intergenic
GGGGTTTGGAATTTGTGTCG+TGG 0.641818 2.2:+7398569 MS.gene043570:CDS
TACTTGAAGTCCAAAGTGGT+AGG 0.647026 2.2:-7399169 None:intergenic
AATATACTTGAAGTCCAAAG+TGG 0.648493 2.2:-7399173 None:intergenic
GATGTGCTCCTAAGTGATTG+TGG 0.690361 2.2:-7399599 None:intergenic
CATCAGTTACTAGAGCTGCA+CGG 0.693655 2.2:-7399055 None:intergenic
GCACCCTGTCAAGAAATGTG+AGG 0.706666 2.2:-7399331 None:intergenic
ACAGATGAGAGCAAGCGTGG+CGG 0.727680 2.2:+7397423 MS.gene043570:CDS
CAGTTAGGAAATCATCATGG+AGG 0.743788 2.2:+7399099 MS.gene043570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTAATTTTTAAAAAAAG+TGG - chr2.2:7398832-7398851 None:intergenic 10.0%
!!! ATGATCATATTTTATATTGT+TGG + chr2.2:7397880-7397899 MS.gene043570:intron 15.0%
!!! TTTTATATTGTTGGTTAAAT+AGG + chr2.2:7397889-7397908 MS.gene043570:intron 15.0%
!! AACTTCAAATTACTATATAG+AGG - chr2.2:7397536-7397555 None:intergenic 20.0%
!! ATAGAAAAGTTTGATATGTT+GGG + chr2.2:7397764-7397783 MS.gene043570:intron 20.0%
!! ATCTATATATATGCAAATTC+AGG + chr2.2:7399024-7399043 MS.gene043570:intron 20.0%
!! ATTTACATTGAGGATAATTT+GGG + chr2.2:7398537-7398556 MS.gene043570:CDS 20.0%
!! CAATGATTTCAATGATTATA+GGG + chr2.2:7399627-7399646 MS.gene043570:CDS 20.0%
!! TATAGAAAAGTTTGATATGT+TGG + chr2.2:7397763-7397782 MS.gene043570:intron 20.0%
!! TATTTACATTGAGGATAATT+TGG + chr2.2:7398536-7398555 MS.gene043570:CDS 20.0%
!! TTATATATAGAACTGTGTAT+TGG - chr2.2:7398362-7398381 None:intergenic 20.0%
!!! AATATGACTAACATAACTTT+TGG - chr2.2:7397584-7397603 None:intergenic 20.0%
! ATGTTAGTCATATTCGAATT+TGG + chr2.2:7397590-7397609 MS.gene043570:intron 25.0%
! CAGATTGTAAACATTGTTAT+CGG + chr2.2:7398009-7398028 MS.gene043570:CDS 25.0%
! GCAATGATTTCAATGATTAT+AGG + chr2.2:7399626-7399645 MS.gene043570:CDS 25.0%
! TAAAAAAAGTGGTTAGTACT+TGG - chr2.2:7398821-7398840 None:intergenic 25.0%
! TAGAAAAGTTTGATATGTTG+GGG + chr2.2:7397765-7397784 MS.gene043570:intron 25.0%
! TATATTAAGTTATTGAGCTC+AGG - chr2.2:7397684-7397703 None:intergenic 25.0%
! TGTTAGTCATATTCGAATTT+GGG + chr2.2:7397591-7397610 MS.gene043570:intron 25.0%
! TTACCTGATGAAATAAATCA+TGG + chr2.2:7399707-7399726 MS.gene043570:CDS 25.0%
! TTGATGAGTTAAAAGATGAA+AGG - chr2.2:7397491-7397510 None:intergenic 25.0%
! TTTATCACATCAATCAAAGT+AGG + chr2.2:7398174-7398193 MS.gene043570:intron 25.0%
!! CTCATCAAAATCATTTTGTT+TGG + chr2.2:7397503-7397522 MS.gene043570:intron 25.0%
!! TATTGTTGGTTAAATAGGTA+TGG + chr2.2:7397894-7397913 MS.gene043570:intron 25.0%
!!! ATCAAGGAATATTTTTCAAC+TGG + chr2.2:7398466-7398485 MS.gene043570:CDS 25.0%
!!! TTATTTTGTGAAATCCATGT+GGG + chr2.2:7398853-7398872 MS.gene043570:intron 25.0%
AACAATTTCCACAATCACTT+AGG + chr2.2:7399591-7399610 MS.gene043570:CDS 30.0%
AATATACTTGAAGTCCAAAG+TGG - chr2.2:7399176-7399195 None:intergenic 30.0%
ACCATCTCATATGTACTTAT+GGG - chr2.2:7397736-7397755 None:intergenic 30.0%
AGAAAAGTTTGATATGTTGG+GGG + chr2.2:7397766-7397785 MS.gene043570:intron 30.0%
AGCATAGTCCTAATATCAAT+TGG + chr2.2:7398381-7398400 MS.gene043570:CDS 30.0%
ATAAGTTTCCCTTTCTTCAT+TGG + chr2.2:7397450-7397469 MS.gene043570:intron 30.0%
ATGAATGAATCATTGCTACA+TGG - chr2.2:7398315-7398334 None:intergenic 30.0%
CACCAAAACCAATTGATATT+AGG - chr2.2:7398392-7398411 None:intergenic 30.0%
CACTGGAATTATTTACATTG+AGG + chr2.2:7398527-7398546 MS.gene043570:CDS 30.0%
CAGACGAATAAGTGTATATT+CGG - chr2.2:7398201-7398220 None:intergenic 30.0%
CGGTAAATGACAAATTGTTT+GGG - chr2.2:7397621-7397640 None:intergenic 30.0%
CTTAAGTAATTGATGAACTC+CGG - chr2.2:7397641-7397660 None:intergenic 30.0%
GTGAATCTCATTACTAAGTA+GGG - chr2.2:7398901-7398920 None:intergenic 30.0%
GTTAGTCATATTCGAATTTG+GGG + chr2.2:7397592-7397611 MS.gene043570:intron 30.0%
TAATTAGAATCCTACCACTT+TGG + chr2.2:7399159-7399178 MS.gene043570:CDS 30.0%
TACCATCTCATATGTACTTA+TGG - chr2.2:7397737-7397756 None:intergenic 30.0%
TCAAGAAATGTGAGGAAAAT+GGG - chr2.2:7399326-7399345 None:intergenic 30.0%
TGATGAAATAAATCATGGCA+AGG + chr2.2:7399712-7399731 MS.gene043570:CDS 30.0%
TGTGAATCTCATTACTAAGT+AGG - chr2.2:7398902-7398921 None:intergenic 30.0%
TTGCCATGATTTATTTCATC+AGG - chr2.2:7399713-7399732 None:intergenic 30.0%
TTTGACAAACTAGAACATCA+AGG + chr2.2:7398450-7398469 MS.gene043570:CDS 30.0%
! CCAAACAATTTGTCATTTAC+CGG + chr2.2:7397619-7397638 MS.gene043570:intron 30.0%
! TAATAGAATGTAACTTGTCC+TGG - chr2.2:7399569-7399588 None:intergenic 30.0%
! TCAACGCTTACTCTTTTATT+TGG - chr2.2:7398934-7398953 None:intergenic 30.0%
!! AACTAGCTGGGATTTTAAAA+TGG - chr2.2:7399274-7399293 None:intergenic 30.0%
!! GTCCTAATATCAATTGGTTT+TGG + chr2.2:7398387-7398406 MS.gene043570:CDS 30.0%
!! GTTATTTTGTGAAATCCATG+TGG + chr2.2:7398852-7398871 MS.gene043570:intron 30.0%
!!! ACTAGCTGGGATTTTAAAAT+GGG - chr2.2:7399273-7399292 None:intergenic 30.0%
!!! CTAATATCAATTGGTTTTGG+TGG + chr2.2:7398390-7398409 MS.gene043570:CDS 30.0%
!!! TGTTGGGTTATCGATTTTAT+CGG + chr2.2:7398619-7398638 MS.gene043570:CDS 30.0%
AAGCATCAATCTATTTCCAC+TGG + chr2.2:7398032-7398051 MS.gene043570:CDS 35.0%
ACATTGAGGATAATTTGGGT+TGG + chr2.2:7398541-7398560 MS.gene043570:CDS 35.0%
ACGTTTCAATGTCTGTGTTA+TGG + chr2.2:7399495-7399514 MS.gene043570:CDS 35.0%
ATACCAACCAACACTAATTG+TGG - chr2.2:7399527-7399546 None:intergenic 35.0%
CATATTCTCCTTTCAATGCT+TGG - chr2.2:7398969-7398988 None:intergenic 35.0%
CCGGTAAATGACAAATTGTT+TGG - chr2.2:7397622-7397641 None:intergenic 35.0%
CGAATATACACTTATTCGTC+TGG + chr2.2:7398199-7398218 MS.gene043570:intron 35.0%
GTCAAGAAATGTGAGGAAAA+TGG - chr2.2:7399327-7399346 None:intergenic 35.0%
GTTAAATAGGTATGGTAGCA+GGG + chr2.2:7397902-7397921 MS.gene043570:intron 35.0%
TACTGGATGTTAGTAGTGTT+TGG + chr2.2:7399746-7399765 MS.gene043570:CDS 35.0%
TATAGCAATCCAAAGTAGCT+TGG + chr2.2:7399208-7399227 MS.gene043570:CDS 35.0%
TCCCATAAGTACATATGAGA+TGG + chr2.2:7397732-7397751 MS.gene043570:intron 35.0%
TTAGTCATGGATCGTTCTTT+AGG + chr2.2:7399245-7399264 MS.gene043570:CDS 35.0%
TTTACGCACTAAATGTTGAG+AGG - chr2.2:7397823-7397842 None:intergenic 35.0%
TTTCCTCACATTTCTTGACA+GGG + chr2.2:7399328-7399347 MS.gene043570:CDS 35.0%
! AAGCTACTTTGGATTGCTAT+AGG - chr2.2:7399209-7399228 None:intergenic 35.0%
! AGTACTTCAAGCTTTAGTCA+TGG + chr2.2:7399232-7399251 MS.gene043570:CDS 35.0%
! CATTGAGGATAATTTGGGTT+GGG + chr2.2:7398542-7398561 MS.gene043570:CDS 35.0%
! GTTGTTTCCACAATTAGTGT+TGG + chr2.2:7399517-7399536 MS.gene043570:CDS 35.0%
! TTCACATTCTATGTTGCTTC+TGG + chr2.2:7398495-7398514 MS.gene043570:CDS 35.0%
! TTCTTCTGGTCATGATGTTT+TGG + chr2.2:7398752-7398771 MS.gene043570:CDS 35.0%
! TTTTAACCTTTGCACATGCA+GGG + chr2.2:7398240-7398259 MS.gene043570:intron 35.0%
! TTTTCCTCACATTTCTTGAC+AGG + chr2.2:7399327-7399346 MS.gene043570:CDS 35.0%
!! ATCGTTGCTGATTCTTTCTT+TGG + chr2.2:7398063-7398082 MS.gene043570:CDS 35.0%
!! ATTTTAACCTTTGCACATGC+AGG + chr2.2:7398239-7398258 MS.gene043570:intron 35.0%
!! CAATTAGTGTTGGTTGGTAT+TGG + chr2.2:7399527-7399546 MS.gene043570:CDS 35.0%
!! GAAAGTTACCAAGCATTGAA+AGG + chr2.2:7398958-7398977 MS.gene043570:intron 35.0%
!! GGTGTGGTTATTTTCTTGTT+GGG + chr2.2:7398603-7398622 MS.gene043570:CDS 35.0%
!! TGGTGTGGTTATTTTCTTGT+TGG + chr2.2:7398602-7398621 MS.gene043570:CDS 35.0%
!! TTTCCACAATTAGTGTTGGT+TGG + chr2.2:7399521-7399540 MS.gene043570:CDS 35.0%
!!! CTAGCTGGGATTTTAAAATG+GGG - chr2.2:7399272-7399291 None:intergenic 35.0%
!!! GTTGGGTTATCGATTTTATC+GGG + chr2.2:7398620-7398639 MS.gene043570:CDS 35.0%
AATCAGTACTCCTACGAACT+TGG - chr2.2:7399685-7399704 None:intergenic 40.0%
ACTGTGTATTGGATTCCAGT+AGG - chr2.2:7398351-7398370 None:intergenic 40.0%
AGAGAGAGACCAATGAAGAA+AGG - chr2.2:7397462-7397481 None:intergenic 40.0%
ATGACAGAAACAGAACTAGC+TGG - chr2.2:7399287-7399306 None:intergenic 40.0%
CAGTTAGGAAATCATCATGG+AGG + chr2.2:7399099-7399118 MS.gene043570:CDS 40.0%
CTTTAATCGACCAAGTTCGT+AGG + chr2.2:7399672-7399691 MS.gene043570:CDS 40.0%
GAAAGAATCAGCAACGATTG+CGG - chr2.2:7398061-7398080 None:intergenic 40.0%
GAATCATTGCTACATGGATG+AGG - chr2.2:7398309-7398328 None:intergenic 40.0%
GAGAGAGACCAATGAAGAAA+GGG - chr2.2:7397461-7397480 None:intergenic 40.0%
GATTACTACGGTAGTTCTTC+TGG + chr2.2:7398738-7398757 MS.gene043570:CDS 40.0%
GCTCAGTTAGGAAATCATCA+TGG + chr2.2:7399096-7399115 MS.gene043570:CDS 40.0%
GGTTAAATAGGTATGGTAGC+AGG + chr2.2:7397901-7397920 MS.gene043570:intron 40.0%
TAACACCGGGAAAAGGATTA+AGG + chr2.2:7398793-7398812 MS.gene043570:CDS 40.0%
TACTTGAAGTCCAAAGTGGT+AGG - chr2.2:7399172-7399191 None:intergenic 40.0%
TCCAGAGTAGAGGATTACTA+CGG + chr2.2:7398726-7398745 MS.gene043570:CDS 40.0%
TGACAGAAACAGAACTAGCT+GGG - chr2.2:7399286-7399305 None:intergenic 40.0%
TGGATGTTAGTAGTGTTTGG+AGG + chr2.2:7399749-7399768 MS.gene043570:CDS 40.0%
TTGTTGCATCTGTTCGTAAG+TGG + chr2.2:7398688-7398707 MS.gene043570:CDS 40.0%
! GGAGAAGCTTTTCATTTTCC+AGG + chr2.2:7399548-7399567 MS.gene043570:CDS 40.0%
! GGATTGCTATAGGAGTTGAT+AGG - chr2.2:7399199-7399218 None:intergenic 40.0%
! TGGTACCTTAATCCTTTTCC+CGG - chr2.2:7398801-7398820 None:intergenic 40.0%
!! AAGTTCGTAGGAGTACTGAT+TGG + chr2.2:7399684-7399703 MS.gene043570:CDS 40.0%
!! ATAATTTGGGTTGGGCATTG+GGG + chr2.2:7398550-7398569 MS.gene043570:CDS 40.0%
!! GATAATTTGGGTTGGGCATT+GGG + chr2.2:7398549-7398568 MS.gene043570:CDS 40.0%
!! GCAAGGTTGATAATGTGTAC+TGG + chr2.2:7399729-7399748 MS.gene043570:CDS 40.0%
!! GCTCTCATCTGTTTCTTTTG+AGG - chr2.2:7397415-7397434 None:intergenic 40.0%
!! TTCTTCTTGTGTTGCTTTGC+TGG + chr2.2:7398107-7398126 MS.gene043570:CDS 40.0%
!!! AGGAAGTGCAGTTTTGGATT+TGG + chr2.2:7398656-7398675 MS.gene043570:CDS 40.0%
!!! GGAAGTGCAGTTTTGGATTT+GGG + chr2.2:7398657-7398676 MS.gene043570:CDS 40.0%
ACCGTAGTAATCCTCTACTC+TGG - chr2.2:7398730-7398749 None:intergenic 45.0%
ACGCACTAAATGTTGAGAGG+CGG - chr2.2:7397820-7397839 None:intergenic 45.0%
ATTACATGCAAGCCACCTAC+TGG + chr2.2:7398333-7398352 MS.gene043570:CDS 45.0%
ATTGTTCCCTGCATGTGCAA+AGG - chr2.2:7398249-7398268 None:intergenic 45.0%
CATCAGTTACTAGAGCTGCA+CGG - chr2.2:7399058-7399077 None:intergenic 45.0%
CCAGTAATCTTATGCCAACC+TGG - chr2.2:7399362-7399381 None:intergenic 45.0%
CCTACTCCTATTCGTTGAAG+CGG - chr2.2:7399398-7399417 None:intergenic 45.0%
CGGAGGAATTGTGGGAAATT+TGG + chr2.2:7397939-7397958 MS.gene043570:CDS 45.0%
GATGTGCTCCTAAGTGATTG+TGG - chr2.2:7399602-7399621 None:intergenic 45.0%
GTGTATTGGATTCCAGTAGG+TGG - chr2.2:7398348-7398367 None:intergenic 45.0%
TAACTGAGCCATCTGAGTGT+AGG - chr2.2:7399085-7399104 None:intergenic 45.0%
TAAGCTCTCATCCAGAGTAG+AGG + chr2.2:7398716-7398735 MS.gene043570:CDS 45.0%
TAATGCGATGTGAACCCACA+TGG - chr2.2:7398870-7398889 None:intergenic 45.0%
TACACTCAGATGGCTCAGTT+AGG + chr2.2:7399084-7399103 MS.gene043570:CDS 45.0%
TATCGGGCTGAAAAGCTACA+AGG + chr2.2:7398636-7398655 MS.gene043570:CDS 45.0%
! CCAGGTTGGCATAAGATTAC+TGG + chr2.2:7399359-7399378 MS.gene043570:CDS 45.0%
!! AATCCTTTTCCCGGTGTTAG+CGG - chr2.2:7398792-7398811 None:intergenic 45.0%
!! GAAGTACTGCCAAGCTACTT+TGG - chr2.2:7399220-7399239 None:intergenic 45.0%
!! GCTACAAGGAAGTGCAGTTT+TGG + chr2.2:7398650-7398669 MS.gene043570:CDS 45.0%
!! GGACATGTGTTGACTGTTCT+TGG + chr2.2:7399416-7399435 MS.gene043570:CDS 45.0%
!! GGATAATTTGGGTTGGGCAT+TGG + chr2.2:7398548-7398567 MS.gene043570:CDS 45.0%
!! TGTGTTGACTGTTCTTGGCA+TGG + chr2.2:7399421-7399440 MS.gene043570:CDS 45.0%
!!! TGTGTCGTGGCTACTTTTGT+TGG + chr2.2:7398582-7398601 MS.gene043570:CDS 45.0%
ACTTGGAAGCGGAGGAATTG+TGG + chr2.2:7397930-7397949 MS.gene043570:CDS 50.0%
CCGCTTCAACGAATAGGAGT+AGG + chr2.2:7399395-7399414 MS.gene043570:CDS 50.0%
CCTATTCGTTGAAGCGGCAT+AGG - chr2.2:7399392-7399411 None:intergenic 50.0%
CGCACTAAATGTTGAGAGGC+GGG - chr2.2:7397819-7397838 None:intergenic 50.0%
CGTTTCACTGCAGCATCACT+AGG + chr2.2:7398417-7398436 MS.gene043570:CDS 50.0%
CTTGGAAGCGGAGGAATTGT+GGG + chr2.2:7397931-7397950 MS.gene043570:CDS 50.0%
GAAACAGATGAGAGCAAGCG+TGG + chr2.2:7397420-7397439 MS.gene043570:CDS 50.0%
GATGCAGACCTACACTCAGA+TGG + chr2.2:7399074-7399093 MS.gene043570:CDS 50.0%
GCACCCTGTCAAGAAATGTG+AGG - chr2.2:7399334-7399353 None:intergenic 50.0%
GCACTAAATGTTGAGAGGCG+GGG - chr2.2:7397818-7397837 None:intergenic 50.0%
GCTGTGCACACTTCAACAAG+TGG + chr2.2:7399121-7399140 MS.gene043570:CDS 50.0%
! CCTATGCCGCTTCAACGAAT+AGG + chr2.2:7399389-7399408 MS.gene043570:CDS 50.0%
! GGGGTTTGGAATTTGTGTCG+TGG + chr2.2:7398569-7398588 MS.gene043570:CDS 50.0%
!!! CGTGGCTACTTTTGTTGGTG+TGG + chr2.2:7398587-7398606 MS.gene043570:CDS 50.0%
ACAGATGAGAGCAAGCGTGG+CGG + chr2.2:7397423-7397442 MS.gene043570:CDS 55.0%
ATGGTAGCAGGGTCGTCACT+TGG + chr2.2:7397913-7397932 MS.gene043570:CDS 55.0%
CTAAATGTTGAGAGGCGGGG+AGG - chr2.2:7397815-7397834 None:intergenic 55.0%
!! ACAGGGTGCTATTGCCAGGT+TGG + chr2.2:7399345-7399364 MS.gene043570:CDS 55.0%
!! CTTGACAGGGTGCTATTGCC+AGG + chr2.2:7399341-7399360 MS.gene043570:CDS 55.0%
!! GCTTCTGGAGCTGCATTCAC+TGG + chr2.2:7398510-7398529 MS.gene043570:CDS 55.0%
!! TTGGGTTGGGCATTGGGGTT+TGG + chr2.2:7398555-7398574 MS.gene043570:CDS 55.0%
AGTGCTGCCTCCGCTAACAC+CGG + chr2.2:7398779-7398798 MS.gene043570:CDS 60.0%
ATGAGAGCAAGCGTGGCGGT+TGG + chr2.2:7397427-7397446 MS.gene043570:intron 60.0%
CCTCCGCTAACACCGGGAAA+AGG + chr2.2:7398786-7398805 MS.gene043570:CDS 60.0%
GCAACGATTGCGGCAACCAG+TGG - chr2.2:7398051-7398070 None:intergenic 60.0%
GCAGGGTCGTCACTTGGAAG+CGG + chr2.2:7397919-7397938 MS.gene043570:CDS 60.0%
!! CCTTTTCCCGGTGTTAGCGG+AGG - chr2.2:7398789-7398808 None:intergenic 60.0%
GGGTCGTCACTTGGAAGCGG+AGG + chr2.2:7397922-7397941 MS.gene043570:CDS 65.0%
GTGCTGCCTCCGCTAACACC+GGG + chr2.2:7398780-7398799 MS.gene043570:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 7397390 7399829 7397390 ID=MS.gene043570
chr2.2 mRNA 7397390 7399829 7397390 ID=MS.gene043570.t1;Parent=MS.gene043570
chr2.2 exon 7397390 7397444 7397390 ID=MS.gene043570.t1.exon1;Parent=MS.gene043570.t1
chr2.2 CDS 7397390 7397444 7397390 ID=cds.MS.gene043570.t1;Parent=MS.gene043570.t1
chr2.2 exon 7397911 7398128 7397911 ID=MS.gene043570.t1.exon2;Parent=MS.gene043570.t1
chr2.2 CDS 7397911 7398128 7397911 ID=cds.MS.gene043570.t1;Parent=MS.gene043570.t1
chr2.2 exon 7398261 7398814 7398261 ID=MS.gene043570.t1.exon3;Parent=MS.gene043570.t1
chr2.2 CDS 7398261 7398814 7398261 ID=cds.MS.gene043570.t1;Parent=MS.gene043570.t1
chr2.2 exon 7399046 7399829 7399046 ID=MS.gene043570.t1.exon4;Parent=MS.gene043570.t1
chr2.2 CDS 7399046 7399829 7399046 ID=cds.MS.gene043570.t1;Parent=MS.gene043570.t1
Gene Sequence

>MS.gene043570

ATGGATGGTAAGCTAGCAGCATCCTCAAAAGAAACAGATGAGAGCAAGCGTGGCGGTTGGATAAGTTTCCCTTTCTTCATTGGTCTCTCTCTCTTTTTCCTTTCATCTTTTAACTCATCAAAATCATTTTGTTTGGTTTTATTCCTCTATATAGTAATTTGAAGTTCAGACGACATGTAAGTAAAGTATGACCAAAAGTTATGTTAGTCATATTCGAATTTGGGGTTTCCCAAACAATTTGTCATTTACCGGAGTTCATCAATTACTTAAGCTTATAAAAGAAACTAATTACCTGAGCTCAATAACTTAATATACACACACGTAAAAAGCATGATCATATTGTCCCATAAGTACATATGAGATGGTAAAAAACTATAGAAAAGTTTGATATGTTGGGGGCGTGTGTTCGAATCTGCAACTTTCCTCCCCGCCTCTCAACATTTAGTGCGTAAATTTTGCTGCTAGTCTCATTGTAACAGAAAAAGAAAGCATGATCATATTTTATATTGTTGGTTAAATAGGTATGGTAGCAGGGTCGTCACTTGGAAGCGGAGGAATTGTGGGAAATTTGGTTGTATATCTTATACAAGAATTCAATATAAAGAGCATCATTGCTGCTCAGATTGTAAACATTGTTATCGGAAGCATCAATCTATTTCCACTGGTTGCCGCAATCGTTGCTGATTCTTTCTTTGGCTCTTTCTCTGTTGCATTTGCTTCTTCTTGTGTTGCTTTGCTGGTAAGCTTCAGCACAAAGCGAGAATTTTTTAATCATATTTCATATTTTATCACATCAATCAAAGTAGGACCGAATATACACTTATTCGTCTGGTAACAATTCTCTTTTAAATTTTAACCTTTGCACATGCAGGGAACAATTATTTTGTTTTTGACAGCAACGATCGATTCTTTAAAGCCTCATCCATGTAGCAATGATTCATTCATTACATGCAAGCCACCTACTGGAATCCAATACACAGTTCTATATATAAGCATAGTCCTAATATCAATTGGTTTTGGTGGTTCACGTTTCACTGCAGCATCACTAGGAGCAAATCAATTTGACAAACTAGAACATCAAGGAATATTTTTCAACTGGTACTTTTTCACATTCTATGTTGCTTCTGGAGCTGCATTCACTGGAATTATTTACATTGAGGATAATTTGGGTTGGGCATTGGGGTTTGGAATTTGTGTCGTGGCTACTTTTGTTGGTGTGGTTATTTTCTTGTTGGGTTATCGATTTTATCGGGCTGAAAAGCTACAAGGAAGTGCAGTTTTGGATTTGGGACGTGTTTTTGTTGCATCTGTTCGTAAGTGGAAGTGTAAGCTCTCATCCAGAGTAGAGGATTACTACGGTAGTTCTTCTGGTCATGATGTTTTGGTTCAAGTGCTGCCTCCGCTAACACCGGGAAAAGGATTAAGGTACCAAGTACTAACCACTTTTTTTAAAAATTACTTAGTTATTTTGTGAAATCCATGTGGGTTCACATCGCATTATAAATTTACCCTACTTAGTAATGAGATTCACATGATTTTTACCAAATAAAAGAGTAAGCGTTGAAAATGAAAGTTACCAAGCATTGAAAGGAGAATATGCTTGTAAATTTCTGCTATATAGTAACAATGTGTTGATCTATATATATGCAAATTCAGGTTCTTCAACCGTGCAGCTCTAGTAACTGATGCAGACCTACACTCAGATGGCTCAGTTAGGAAATCATCATGGAGGCTGTGCACACTTCAACAAGTGGAAGATTTTAAAAAAATAATTAGAATCCTACCACTTTGGACTTCAAGTATATTCCTATCAACTCCTATAGCAATCCAAAGTAGCTTGGCAGTACTTCAAGCTTTAGTCATGGATCGTTCTTTAGGACCCCATTTTAAAATCCCAGCTAGTTCTGTTTCTGTCATAGTCTTAATATCAGCACCCATTTTCCTCACATTTCTTGACAGGGTGCTATTGCCAGGTTGGCATAAGATTACTGGAAAAACGCCTATGCCGCTTCAACGAATAGGAGTAGGACATGTGTTGACTGTTCTTGGCATGGTTGTGTCTGCTCTTGTTGAATCAAAGAGACTCAAATTAGCACATGTGCATGACGTTTCAATGTCTGTGTTATGGTTGTTTCCACAATTAGTGTTGGTTGGTATTGGAGAAGCTTTTCATTTTCCAGGACAAGTTACATTCTATTATCAACAATTTCCACAATCACTTAGGAGCACATCAACAGCAATGATTTCAATGATTATAGGGATTGCTTTTTACTTGAGCGCTGCTTTAATCGACCAAGTTCGTAGGAGTACTGATTGGTTACCTGATGAAATAAATCATGGCAAGGTTGATAATGTGTACTGGATGTTAGTAGTGTTTGGAGGTATCAACTTTGTGTATTACTTACTGTGCTCTATTTCTTACAAGTATGAAAATGTTTAA
Protein sequence

>MS.gene043570.t1

MDGKLAASSKETDESKRGGMVAGSSLGSGGIVGNLVVYLIQEFNIKSIIAAQIVNIVIGSINLFPLVAAIVADSFFGSFSVAFASSCVALLGTIILFLTATIDSLKPHPCSNDSFITCKPPTGIQYTVLYISIVLISIGFGGSRFTAASLGANQFDKLEHQGIFFNWYFFTFYVASGAAFTGIIYIEDNLGWALGFGICVVATFVGVVIFLLGYRFYRAEKLQGSAVLDLGRVFVASVRKWKCKLSSRVEDYYGSSSGHDVLVQVLPPLTPGKGLRFFNRAALVTDADLHSDGSVRKSSWRLCTLQQVEDFKKIIRILPLWTSSIFLSTPIAIQSSLAVLQALVMDRSLGPHFKIPASSVSVIVLISAPIFLTFLDRVLLPGWHKITGKTPMPLQRIGVGHVLTVLGMVVSALVESKRLKLAHVHDVSMSVLWLFPQLVLVGIGEAFHFPGQVTFYYQQFPQSLRSTSTAMISMIIGIAFYLSAALIDQVRRSTDWLPDEINHGKVDNVYWMLVVFGGINFVYYLLCSISYKYENV