AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42839

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42839.t1 MTR_2g093160 87.636 550 61 3 1 544 1 549 0.0 953
MS.gene42839.t1 MTR_2g093180 84.909 550 77 2 1 544 1 550 0.0 898
MS.gene42839.t1 MTR_2g093640 81.967 549 94 1 1 544 1 549 0.0 891
MS.gene42839.t1 MTR_4g107530 35.432 556 319 9 19 543 36 582 3.42e-105 328
MS.gene42839.t1 MTR_5g038060 34.892 556 336 8 10 542 25 577 3.07e-104 326
MS.gene42839.t1 MTR_4g107580 35.060 579 330 14 1 542 4 573 7.18e-104 325
MS.gene42839.t1 MTR_4g107510 34.768 581 329 14 2 544 18 586 2.26e-102 320
MS.gene42839.t1 MTR_8g469480 34.307 548 336 8 19 544 41 586 2.68e-100 315
MS.gene42839.t1 MTR_3g112460 32.369 553 349 7 2 540 9 550 2.72e-95 301
MS.gene42839.t1 MTR_2g101590 33.393 557 331 12 11 539 21 565 1.95e-94 301
MS.gene42839.t1 MTR_4g011280 32.804 567 338 12 4 539 15 569 3.53e-94 299
MS.gene42839.t1 MTR_2g101610 32.737 559 336 12 9 539 20 566 1.10e-93 299
MS.gene42839.t1 MTR_4g101380 34.397 564 324 12 13 543 24 574 2.77e-93 297
MS.gene42839.t1 MTR_5g055000 32.428 552 343 8 16 544 18 562 6.29e-93 296
MS.gene42839.t1 MTR_4g107610 32.541 547 344 7 6 532 21 562 9.05e-93 296
MS.gene42839.t1 MTR_7g088825 31.383 564 356 11 2 542 10 565 2.24e-92 295
MS.gene42839.t1 MTR_7g067010 31.083 563 359 8 2 544 10 563 2.35e-92 293
MS.gene42839.t1 MTR_3g112470 31.826 553 352 7 2 540 9 550 4.63e-92 293
MS.gene42839.t1 MTR_3g462710 31.504 565 354 10 2 543 10 564 4.88e-92 293
MS.gene42839.t1 MTR_2g101650 34.225 561 331 13 11 544 19 568 5.94e-92 293
MS.gene42839.t1 MTR_8g469470 32.105 570 354 11 2 543 18 582 2.03e-91 292
MS.gene42839.t1 MTR_2g101640 32.810 573 340 13 1 539 1 562 2.61e-89 288
MS.gene42839.t1 MTR_5g012290 32.977 561 339 12 10 543 21 571 3.00e-89 286
MS.gene42839.t1 MTR_4g015080 30.565 566 358 10 2 544 20 573 4.11e-89 285
MS.gene42839.t1 MTR_4g114340 33.942 548 331 9 13 540 21 557 6.91e-89 285
MS.gene42839.t1 MTR_2g101560 33.036 560 333 11 9 539 20 566 9.51e-89 286
MS.gene42839.t1 MTR_5g038190 29.859 566 367 10 1 542 9 568 1.97e-88 284
MS.gene42839.t1 MTR_5g012270 31.843 559 342 10 13 543 26 573 3.06e-88 283
MS.gene42839.t1 MTR_1g057460 33.274 562 328 14 3 539 25 564 1.40e-86 279
MS.gene42839.t1 MTR_8g103233 32.558 559 338 12 8 539 7 553 1.73e-86 279
MS.gene42839.t1 MTR_1g026740 32.437 558 325 18 6 529 4 543 1.46e-85 276
MS.gene42839.t1 MTR_3g069500 32.432 555 350 11 2 544 21 562 1.64e-85 276
MS.gene42839.t1 MTR_7g088790 30.796 565 362 10 1 542 14 572 1.07e-84 275
MS.gene42839.t1 MTR_7g088820 30.466 558 359 10 8 542 17 568 1.10e-84 274
MS.gene42839.t1 MTR_3g112450 32.044 543 344 9 13 540 20 552 2.24e-82 268
MS.gene42839.t1 MTR_4g033325 33.627 568 319 14 1 543 16 550 1.01e-81 266
MS.gene42839.t1 MTR_1g009200 32.310 554 333 11 14 539 25 564 2.74e-81 265
MS.gene42839.t1 MTR_1g042310 29.307 563 366 9 2 542 12 564 3.86e-81 265
MS.gene42839.t1 MTR_1g026750 32.428 552 334 12 14 539 16 554 4.45e-81 264
MS.gene42839.t1 MTR_7g098220 30.035 566 362 8 2 544 16 570 5.36e-81 265
MS.gene42839.t1 MTR_7g098160 28.147 572 361 9 2 542 19 571 6.72e-81 265
MS.gene42839.t1 MTR_7g098040 27.305 564 376 8 2 542 20 572 1.30e-80 264
MS.gene42839.t1 MTR_4g019580 31.818 550 344 10 14 544 34 571 1.32e-80 263
MS.gene42839.t1 MTR_1g057460 33.010 515 304 13 44 539 1 493 1.91e-80 261
MS.gene42839.t1 MTR_7g064780 31.868 546 350 8 8 533 18 561 2.23e-80 263
MS.gene42839.t1 MTR_7g098180 29.277 567 366 9 2 544 17 572 2.44e-80 263
MS.gene42839.t1 MTR_3g069440 31.206 564 355 8 2 544 19 570 2.55e-80 263
MS.gene42839.t1 MTR_7g098090 28.471 569 368 9 2 542 19 576 6.87e-80 262
MS.gene42839.t1 MTR_7g098200 28.947 570 361 9 2 543 15 568 2.49e-79 260
MS.gene42839.t1 MTR_7g098200 29.027 565 357 9 2 543 15 558 6.42e-79 259
MS.gene42839.t1 MTR_7g065080 30.642 545 351 9 14 544 29 560 8.44e-79 258
MS.gene42839.t1 MTR_3g014790 30.458 568 331 11 10 543 11 548 1.33e-78 258
MS.gene42839.t1 MTR_0294s0020 32.628 567 326 11 1 543 16 550 3.26e-78 256
MS.gene42839.t1 MTR_1g026770 31.216 551 339 15 15 539 14 550 6.90e-78 256
MS.gene42839.t1 MTR_1g075440 28.772 570 360 9 2 542 14 566 6.99e-78 256
MS.gene42839.t1 MTR_3g462710 32.613 463 279 10 104 543 3 455 2.09e-77 251
MS.gene42839.t1 MTR_5g014150 30.442 565 361 10 1 540 29 586 7.48e-77 254
MS.gene42839.t1 MTR_1g042310 29.658 526 338 9 39 542 12 527 8.33e-77 253
MS.gene42839.t1 MTR_1g042310 29.658 526 338 9 39 542 5 520 9.86e-77 252
MS.gene42839.t1 MTR_3g072300 30.335 567 356 12 2 543 10 562 1.03e-76 253
MS.gene42839.t1 MTR_4g033315 31.746 567 333 12 1 543 16 552 1.60e-76 252
MS.gene42839.t1 MTR_4g033310 31.746 567 333 12 1 543 16 552 1.60e-76 252
MS.gene42839.t1 MTR_7g098220 30.435 529 334 8 39 544 9 526 4.23e-76 251
MS.gene42839.t1 MTR_7g005930 29.596 544 359 8 13 540 32 567 4.99e-76 251
MS.gene42839.t1 MTR_7g088820 30.769 507 322 10 59 542 6 506 7.47e-76 249
MS.gene42839.t1 MTR_2g093650 69.519 187 15 2 334 520 34 178 1.08e-75 239
MS.gene42839.t1 MTR_4g033330 32.661 545 313 12 1 521 16 530 1.81e-75 248
MS.gene42839.t1 MTR_1g041875 28.119 537 361 8 2 523 15 541 4.31e-75 249
MS.gene42839.t1 MTR_0236s0050 31.845 515 310 13 44 539 1 493 1.48e-74 245
MS.gene42839.t1 MTR_7g065080 31.340 485 306 9 74 544 2 473 1.67e-74 245
MS.gene42839.t1 MTR_1g041815 28.697 568 362 9 2 542 13 564 1.84e-74 247
MS.gene42839.t1 MTR_5g085850 29.650 543 356 11 13 542 27 556 4.99e-74 246
MS.gene42839.t1 MTR_4g033375 32.485 511 294 10 1 491 17 496 9.69e-74 243
MS.gene42839.t1 MTR_1g041835 27.817 568 367 9 2 542 13 564 2.52e-73 244
MS.gene42839.t1 MTR_7g098230 28.409 528 344 8 39 543 49 565 6.58e-73 243
MS.gene42839.t1 MTR_4g098800 29.701 569 368 12 1 543 21 583 7.30e-73 243
MS.gene42839.t1 MTR_7g064800 30.490 551 357 8 12 536 22 572 1.12e-72 243
MS.gene42839.t1 MTR_3g069420 29.966 584 356 11 1 544 1 571 1.78e-72 242
MS.gene42839.t1 MTR_4g033395 32.359 513 294 11 1 492 17 497 2.22e-72 239
MS.gene42839.t1 MTR_4g098800 29.701 569 368 12 1 543 86 648 2.88e-72 243
MS.gene42839.t1 MTR_7g013270 29.211 558 363 9 1 540 81 624 3.48e-71 240
MS.gene42839.t1 MTR_7g010820 29.720 572 359 9 1 541 11 570 1.42e-70 237
MS.gene42839.t1 MTR_3g005010 29.350 569 339 11 1 544 15 545 1.45e-70 236
MS.gene42839.t1 MTR_8g038880 30.303 561 333 11 15 544 19 552 1.99e-70 236
MS.gene42839.t1 MTR_1g116930 29.189 555 365 10 8 544 15 559 1.73e-69 234
MS.gene42839.t1 MTR_7g088820 30.937 459 288 10 107 542 6 458 2.40e-69 231
MS.gene42839.t1 MTR_2g005130 28.957 556 364 9 1 542 25 563 4.51e-69 233
MS.gene42839.t1 MTR_1g041885 28.287 502 335 8 39 525 5 496 4.91e-69 231
MS.gene42839.t1 MTR_4g033325 34.081 446 246 13 123 543 4 426 7.31e-68 226
MS.gene42839.t1 MTR_4g033325 33.761 468 252 14 101 543 18 452 1.41e-67 226
MS.gene42839.t1 MTR_3g100980 28.625 531 329 12 43 544 43 552 3.64e-67 227
MS.gene42839.t1 MTR_7g098150 29.186 442 293 6 2 434 19 449 1.51e-66 224
MS.gene42839.t1 MTR_5g038380 27.210 577 368 13 2 542 14 574 2.45e-66 226
MS.gene42839.t1 MTR_7g098200 29.701 468 285 9 104 543 3 454 1.44e-65 221
MS.gene42839.t1 MTR_2g017750 29.541 501 315 11 75 542 93 588 1.56e-65 224
MS.gene42839.t1 MTR_8g469310 27.611 565 366 13 9 542 19 571 3.24e-65 222
MS.gene42839.t1 MTR_4g123537 27.257 565 373 11 2 543 22 571 6.79e-64 220
MS.gene42839.t1 MTR_4g107670 26.712 584 365 14 2 543 10 572 1.61e-62 215
MS.gene42839.t1 MTR_7g111260 27.641 568 358 14 7 543 2 547 2.15e-62 215
MS.gene42839.t1 MTR_4g033385 32.432 444 251 11 127 543 32 453 2.33e-62 212
MS.gene42839.t1 MTR_3g100980 27.728 559 326 14 43 544 43 580 2.26e-61 213
MS.gene42839.t1 MTR_8g087780 26.445 571 389 9 1 542 6 574 6.17e-61 211
MS.gene42839.t1 MTR_8g087810 27.972 572 380 10 1 542 6 575 1.83e-60 210
MS.gene42839.t1 MTR_1g085090 27.068 532 350 11 33 543 33 547 2.30e-58 204
MS.gene42839.t1 MTR_7g006540 26.916 561 371 12 13 542 60 612 7.87e-56 198
MS.gene42839.t1 MTR_8g091265 70.229 131 34 2 285 410 3 133 6.14e-54 179
MS.gene42839.t1 MTR_7g098210 26.718 524 280 11 39 543 5 443 1.78e-47 171
MS.gene42839.t1 MTR_4g024930 26.335 562 361 14 2 540 22 553 5.23e-47 173
MS.gene42839.t1 MTR_6g008690 24.214 541 336 12 39 540 30 535 4.73e-44 164
MS.gene42839.t1 MTR_7g051880 24.354 542 363 11 10 539 19 525 2.19e-43 162
MS.gene42839.t1 MTR_7g051830 23.616 542 367 10 10 539 19 525 3.29e-42 159
MS.gene42839.t1 MTR_7g052600 24.308 506 340 9 44 539 53 525 6.86e-41 155
MS.gene42839.t1 MTR_1g009170 26.866 402 224 11 144 525 9 360 3.31e-34 134
MS.gene42839.t1 MTR_4g033310 29.338 317 189 8 244 543 190 488 3.94e-33 132
MS.gene42839.t1 MTR_4g033310 33.862 189 108 4 1 184 16 192 7.72e-18 87.0
MS.gene42839.t1 MTR_8g091275 63.889 72 25 1 192 262 1 72 6.04e-26 102
MS.gene42839.t1 MTR_8g091480 66.667 57 14 1 228 284 38 89 7.29e-16 81.3
MS.gene42839.t1 MTR_3g065350 32.258 155 96 4 326 474 1 152 1.44e-12 66.2
MS.gene42839.t1 MTR_7g064160 31.183 93 64 0 8 100 21 113 4.38e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42839.t1 AT3G45650 50.998 551 249 5 2 544 8 545 0.0 565
MS.gene42839.t1 AT3G45660 50.640 547 249 5 6 544 32 565 0.0 559
MS.gene42839.t1 AT3G45660 50.640 547 249 5 6 544 11 544 0.0 559
MS.gene42839.t1 AT3G45660 50.640 547 249 5 6 544 11 544 0.0 559
MS.gene42839.t1 AT3G45650 48.700 577 249 6 2 544 8 571 0.0 550
MS.gene42839.t1 AT3G45680 49.623 530 263 2 15 544 19 544 0.0 535
MS.gene42839.t1 AT3G45710 47.243 544 281 4 2 544 8 546 0.0 532
MS.gene42839.t1 AT3G45700 48.491 530 263 3 15 544 15 534 0.0 523
MS.gene42839.t1 AT3G45720 45.251 537 289 2 8 544 11 542 2.61e-171 496
MS.gene42839.t1 AT3G45690 45.269 539 248 9 7 544 9 501 1.35e-157 460
MS.gene42839.t1 AT1G69870 35.986 553 329 8 11 542 46 594 5.59e-112 346
MS.gene42839.t1 AT1G18880 36.395 577 318 11 4 544 5 568 1.60e-108 336
MS.gene42839.t1 AT3G47960 35.420 559 312 12 19 542 64 608 2.64e-102 322
MS.gene42839.t1 AT1G27080 32.969 549 348 7 8 542 6 548 1.80e-97 307
MS.gene42839.t1 AT5G62680 34.234 555 326 10 19 542 46 592 1.87e-97 308
MS.gene42839.t1 AT2G26690 34.608 549 331 10 10 540 18 556 2.41e-96 304
MS.gene42839.t1 AT1G62200 32.971 552 344 9 2 535 38 581 1.10e-94 300
MS.gene42839.t1 AT3G16180 32.613 555 339 11 12 539 19 565 5.13e-94 299
MS.gene42839.t1 AT5G01180 31.261 563 359 9 2 544 11 565 8.07e-94 298
MS.gene42839.t1 AT5G01180 31.261 563 359 9 2 544 11 565 8.07e-94 298
MS.gene42839.t1 AT5G01180 31.261 563 359 9 2 544 11 565 8.07e-94 298
MS.gene42839.t1 AT1G52190 32.389 565 342 12 7 539 10 566 9.46e-94 298
MS.gene42839.t1 AT3G54140 31.016 561 360 9 2 542 10 563 1.15e-92 295
MS.gene42839.t1 AT3G54140 31.016 561 360 9 2 542 10 563 1.15e-92 295
MS.gene42839.t1 AT2G26690 34.463 531 320 10 28 540 3 523 3.79e-90 287
MS.gene42839.t1 AT1G62200 31.897 580 342 11 2 535 38 610 4.35e-90 289
MS.gene42839.t1 AT1G62200 31.897 580 342 11 2 535 52 624 5.00e-90 290
MS.gene42839.t1 AT2G26690 34.808 520 311 10 39 540 2 511 6.19e-90 286
MS.gene42839.t1 AT1G27080 32.812 512 324 7 45 542 1 506 1.28e-89 285
MS.gene42839.t1 AT1G68570 33.757 551 338 8 17 544 24 570 4.00e-89 286
MS.gene42839.t1 AT1G68570 34.026 529 322 8 39 544 16 540 1.61e-86 278
MS.gene42839.t1 AT5G28470 30.811 555 359 11 8 543 9 557 3.95e-83 270
MS.gene42839.t1 AT2G02040 29.433 564 370 8 2 544 27 583 4.02e-83 270
MS.gene42839.t1 AT3G54450 28.169 568 356 8 5 544 1 544 1.70e-82 268
MS.gene42839.t1 AT5G28470 30.018 553 364 9 8 543 9 555 1.10e-81 266
MS.gene42839.t1 AT1G69860 30.769 559 362 9 1 543 1 550 1.48e-79 260
MS.gene42839.t1 AT5G46040 29.834 543 350 7 2 523 13 545 2.98e-79 260
MS.gene42839.t1 AT2G02020 29.859 566 326 10 2 544 28 545 1.38e-78 257
MS.gene42839.t1 AT3G21670 31.618 544 347 12 13 542 26 558 2.29e-78 258
MS.gene42839.t1 AT1G12110 31.295 556 354 9 10 543 21 570 7.59e-78 256
MS.gene42839.t1 AT3G53960 29.656 553 355 11 14 544 35 575 1.66e-74 248
MS.gene42839.t1 AT2G37900 29.264 557 370 9 1 544 23 568 3.82e-74 246
MS.gene42839.t1 AT2G40460 29.947 571 347 13 2 543 10 556 3.18e-73 244
MS.gene42839.t1 AT1G32450 30.018 563 367 10 2 540 23 582 3.62e-73 244
MS.gene42839.t1 AT1G27040 28.829 555 359 9 9 541 16 556 4.17e-72 240
MS.gene42839.t1 AT1G27040 29.159 559 352 11 9 541 20 560 4.57e-72 240
MS.gene42839.t1 AT5G46050 28.386 539 353 9 2 518 13 540 1.69e-71 239
MS.gene42839.t1 AT1G27040 30.038 526 324 11 42 541 21 528 2.22e-71 238
MS.gene42839.t1 AT4G21680 29.577 568 363 13 2 541 14 572 6.66e-70 235
MS.gene42839.t1 AT1G33440 30.331 544 353 9 15 542 37 570 1.82e-69 234
MS.gene42839.t1 AT5G19640 27.636 550 375 8 2 540 45 582 7.93e-69 233
MS.gene42839.t1 AT1G69850 30.511 567 350 12 14 544 23 581 3.10e-68 231
MS.gene42839.t1 AT2G37900 29.600 500 321 10 65 544 1 489 6.95e-68 228
MS.gene42839.t1 AT1G22540 31.418 557 326 11 9 539 23 549 5.74e-67 226
MS.gene42839.t1 AT1G72125 30.660 561 330 13 14 544 27 558 6.07e-67 227
MS.gene42839.t1 AT1G22550 30.162 557 340 9 14 544 28 561 7.41e-67 226
MS.gene42839.t1 AT1G22570 30.726 537 316 12 14 520 28 538 2.35e-66 225
MS.gene42839.t1 AT1G59740 28.467 548 360 10 10 536 35 571 9.15e-66 224
MS.gene42839.t1 AT1G72130 30.182 550 328 11 11 541 20 532 6.16e-65 221
MS.gene42839.t1 AT5G46050 29.977 437 275 7 103 518 2 428 3.85e-64 217
MS.gene42839.t1 AT1G72140 27.580 562 335 11 14 543 32 553 1.02e-63 218
MS.gene42839.t1 AT1G22570 30.664 512 299 12 39 520 16 501 2.12e-62 214
MS.gene42839.t1 AT1G72120 29.517 559 335 10 14 544 27 554 4.37e-61 211
MS.gene42839.t1 AT1G72130 30.485 433 256 9 128 541 8 414 1.82e-55 192
MS.gene42839.t1 AT1G72130 30.485 433 256 9 128 541 8 414 1.82e-55 192
MS.gene42839.t1 AT3G25260 27.168 519 305 8 43 539 48 515 5.15e-55 194
MS.gene42839.t1 AT5G62730 26.736 576 357 11 2 543 42 586 6.44e-55 195
MS.gene42839.t1 AT5G62730 27.664 535 322 11 43 543 24 527 3.08e-54 192
MS.gene42839.t1 AT5G13400 26.118 559 376 11 15 544 63 613 2.82e-53 191
MS.gene42839.t1 AT5G14940 26.703 543 324 13 39 540 30 539 2.53e-52 187
MS.gene42839.t1 AT5G11570 27.425 536 293 13 22 539 19 476 2.20e-48 175
MS.gene42839.t1 AT3G25280 24.902 510 334 9 43 539 48 521 3.54e-44 164
MS.gene42839.t1 AT3G01350 25.323 541 335 11 39 535 30 545 2.74e-43 162
MS.gene42839.t1 AT2G02020 30.303 264 176 2 2 260 28 288 1.51e-34 137
MS.gene42839.t1 AT2G02020 33.486 218 122 7 345 544 312 524 1.46e-25 110
MS.gene42839.t1 AT2G38100 25.333 525 323 15 44 541 2 484 3.24e-29 121
MS.gene42839.t1 AT2G38100 25.333 525 323 15 44 541 18 500 5.37e-29 120
MS.gene42839.t1 AT2G38100 25.333 525 323 15 44 541 24 506 6.67e-29 120

Find 107 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTACATTGAGGATAATT+TGG 0.105611 2.3:+8058529 MS.gene42839:CDS
GATAATTTGGGTTGGGCTTT+GGG 0.135390 2.3:+8058542 MS.gene42839:CDS
TTGGGTTGGGCTTTGGGGTT+TGG 0.178493 2.3:+8058548 MS.gene42839:CDS
ATCGTTGCTGATTCTTTCTT+TGG 0.186929 2.3:+8058056 MS.gene42839:CDS
TTCACATTCTATGTTGCTTC+TGG 0.199343 2.3:+8058488 MS.gene42839:CDS
GGATAATTTGGGTTGGGCTT+TGG 0.200907 2.3:+8058541 MS.gene42839:CDS
TTCTTCTTGTGTTGCTTTGC+TGG 0.209226 2.3:+8058100 MS.gene42839:CDS
TTCTTCTGGCCATGATGTTT+TGG 0.270044 2.3:+8058745 MS.gene42839:CDS
CCAGGTTGGCATAAGATTAC+TGG 0.280111 2.3:+8060180 MS.gene42839:CDS
ATAAGTTTCCCTTTCTTCAT+TGG 0.280778 2.3:+8057443 MS.gene42839:CDS
GCTACAAGGAAGTGCAGTTT+TGG 0.285342 2.3:+8058643 MS.gene42839:CDS
GTCCTAATATCAATTGGTTT+TGG 0.302104 2.3:+8058380 MS.gene42839:CDS
GATTACTATGGTAGTTCTTC+TGG 0.302241 2.3:+8058731 MS.gene42839:CDS
CAATGATTTCAATGATTATA+GGG 0.302871 2.3:+8060445 MS.gene42839:CDS
TAATTAGAATCCTACCTCTT+TGG 0.304616 2.3:+8059980 MS.gene42839:CDS
GCAATGATTTCAATGATTAT+AGG 0.313595 2.3:+8060444 MS.gene42839:CDS
GTCAAGAAATGTGAGGAAAA+TGG 0.324649 2.3:-8060145 None:intergenic
ATTTACATTGAGGATAATTT+GGG 0.326688 2.3:+8058530 MS.gene42839:CDS
CAATTAGTGTTGGTTGGTAT+TGG 0.327167 2.3:+8060345 MS.gene42839:CDS
TTAGTCATGGATCGTTCTTT+AGG 0.329015 2.3:+8060066 MS.gene42839:CDS
CACCAAAACCAATTGATATT+AGG 0.344369 2.3:-8058382 None:intergenic
TACTGGATGTTAGTAGTGTT+TGG 0.345072 2.3:+8060564 MS.gene42839:CDS
ATGTTTCTATGTCTGTGTTA+TGG 0.348978 2.3:+8060313 MS.gene42839:CDS
TTGCCATGATTTATTTCATC+AGG 0.374654 2.3:-8060528 None:intergenic
TAACACCGGGAAAAGGATTA+AGG 0.383763 2.3:+8058786 MS.gene42839:CDS
GGACATGTGTTGACTGTTCT+TGG 0.383903 2.3:+8060237 MS.gene42839:CDS
GAAGTACAGCCAAGCTACTT+TGG 0.393641 2.3:-8060038 None:intergenic
CATTGAGGATAATTTGGGTT+GGG 0.396126 2.3:+8058535 MS.gene42839:CDS
AAGCTACTTTGGATTGCTAT+AGG 0.411822 2.3:-8060027 None:intergenic
AGCATAGTCCTAATATCAAT+TGG 0.421222 2.3:+8058374 MS.gene42839:CDS
CTTGACAGGGTGCTATTGCC+AGG 0.421420 2.3:+8060162 MS.gene42839:CDS
ATAATTTGGGTTGGGCTTTG+GGG 0.424970 2.3:+8058543 MS.gene42839:CDS
GCTTCTGGAGCTGCATTCAC+TGG 0.428108 2.3:+8058503 MS.gene42839:CDS
CAGGGTCGTCACTTGGAAGC+GGG 0.430343 2.3:+8057913 MS.gene42839:CDS
GGATTGCTATAGGAGTTGAT+AGG 0.442808 2.3:-8060017 None:intergenic
CCTATGCCGCTTCAACGAAT+AGG 0.444488 2.3:+8060210 MS.gene42839:CDS
GGTTAAATAGGTATGGTAGC+AGG 0.446679 2.3:+8057894 MS.gene42839:intron
GAGAGAGACCAATGAAGAAA+GGG 0.452539 2.3:-8057451 None:intergenic
TAATAGAATGTAACTTGTCC+TGG 0.454723 2.3:-8060384 None:intergenic
AGAGAGAGACCAATGAAGAA+AGG 0.466641 2.3:-8057452 None:intergenic
TCCAGAGTAGAGGATTACTA+TGG 0.467175 2.3:+8058719 MS.gene42839:CDS
TTATATATAGAACTGTGTAT+TGG 0.469265 2.3:-8058352 None:intergenic
CACTGGAATTATTTACATTG+AGG 0.469878 2.3:+8058520 MS.gene42839:CDS
GCAGGGTCGTCACTTGGAAG+CGG 0.470658 2.3:+8057912 MS.gene42839:CDS
ATTACATGCAAGCCACCTAC+TGG 0.472106 2.3:+8058326 MS.gene42839:CDS
AATCAGTACTCCTACGAACT+TGG 0.476238 2.3:-8060500 None:intergenic
CCTATTCGTTGAAGCGGCAT+AGG 0.476519 2.3:-8060210 None:intergenic
TTTCCACAATTAGTGTTGGT+TGG 0.482453 2.3:+8060339 MS.gene42839:CDS
CCAGTAATCTTATGCCAACC+TGG 0.485407 2.3:-8060180 None:intergenic
CCTCCGCTAACACCGGGAAA+AGG 0.486201 2.3:+8058779 MS.gene42839:CDS
CGTTTCACTGCAGCATCACT+AGG 0.490573 2.3:+8058410 MS.gene42839:CDS
ACAGGGTGCTATTGCCAGGT+TGG 0.495314 2.3:+8060166 MS.gene42839:CDS
TCAAGAAATGTGAGGAAAAT+GGG 0.497572 2.3:-8060144 None:intergenic
ATGACAGAAACAGAACTAGC+TGG 0.499461 2.3:-8060105 None:intergenic
TACACTCAGATGGCTCAGTT+AGG 0.509635 2.3:+8059905 MS.gene42839:CDS
AACAATTTCCACAATCACTT+AGG 0.511803 2.3:+8060409 MS.gene42839:CDS
TGTGTTGACTGTTCTTGGCA+TGG 0.519665 2.3:+8060242 MS.gene42839:CDS
AAGCATCAATCTATTTCCAC+TGG 0.527700 2.3:+8058025 MS.gene42839:CDS
ATGGTAGCAGGGTCGTCACT+TGG 0.529743 2.3:+8057906 MS.gene42839:CDS
TTACCTGATGAAATAAATCA+TGG 0.531630 2.3:+8060525 MS.gene42839:CDS
TTGTTGCATCTATTCGTAAG+TGG 0.534607 2.3:+8058681 MS.gene42839:CDS
GTTGTTTCCACAATTAGTGT+TGG 0.534629 2.3:+8060335 MS.gene42839:CDS
ACATTGAGGATAATTTGGGT+TGG 0.535748 2.3:+8058534 MS.gene42839:CDS
ATACCAACCAACACTAATTG+TGG 0.537554 2.3:-8060342 None:intergenic
TATCGGGCTGAAAAGCTACA+AGG 0.546688 2.3:+8058629 MS.gene42839:CDS
TTTCCTCACATTTCTTGACA+GGG 0.548202 2.3:+8060149 MS.gene42839:CDS
AGGGTCGTCACTTGGAAGCG+GGG 0.549474 2.3:+8057914 MS.gene42839:CDS
GCAAGGTAGATAATGTGTAC+TGG 0.551200 2.3:+8060547 MS.gene42839:CDS
TATAGCAATCCAAAGTAGCT+TGG 0.554810 2.3:+8060029 MS.gene42839:CDS
AAGTTCGTAGGAGTACTGAT+TGG 0.558833 2.3:+8060502 MS.gene42839:CDS
ACCATAGTAATCCTCTACTC+TGG 0.561531 2.3:-8058720 None:intergenic
GAAACAGATGAGAGCAAGAG+TGG 0.566534 2.3:+8057413 MS.gene42839:CDS
AGTGCTGCCTCCGCTAACAC+CGG 0.566712 2.3:+8058772 MS.gene42839:CDS
TGGATGTTAGTAGTGTTTGG+AGG 0.575496 2.3:+8060567 MS.gene42839:CDS
GAATCATTGCTACATGGATG+AGG 0.577520 2.3:-8058299 None:intergenic
GTGCTGCCTCCGCTAACACC+GGG 0.585063 2.3:+8058773 MS.gene42839:CDS
GCAACGATTGCGGCAACCAG+TGG 0.585741 2.3:-8058041 None:intergenic
TAACTGAGCCATCTGAGTGT+AGG 0.589021 2.3:-8059903 None:intergenic
TGACAGAAACAGAACTAGCT+GGG 0.591074 2.3:-8060104 None:intergenic
ATGAGAGCAAGAGTGGCGGT+TGG 0.591364 2.3:+8057420 MS.gene42839:CDS
GGGTCGTCACTTGGAAGCGG+GGG 0.595201 2.3:+8057915 MS.gene42839:CDS
GTTAAATAGGTATGGTAGCA+GGG 0.599124 2.3:+8057895 MS.gene42839:intron
TGCAAGTGTGCAACAATGGA+TGG 0.601310 2.3:+8057368 None:intergenic
GCACTTGAACCAAAACATCA+TGG 0.605255 2.3:-8058754 None:intergenic
CCTACTCCTATTCGTTGAAG+CGG 0.605706 2.3:-8060216 None:intergenic
CTTTAATCGACCAAGTTCGT+AGG 0.606772 2.3:+8060490 MS.gene42839:CDS
GAAAGAATCAGCAACGATTG+CGG 0.609321 2.3:-8058051 None:intergenic
TAAGCTCTCATCCAGAGTAG+AGG 0.611738 2.3:+8058709 MS.gene42839:CDS
TTTGACAAACTAGAACATCA+AGG 0.611836 2.3:+8058443 MS.gene42839:CDS
CCGCTTCAACGAATAGGAGT+AGG 0.614584 2.3:+8060216 MS.gene42839:CDS
TGTACTTCAAGCTTTAGTCA+TGG 0.614823 2.3:+8060053 MS.gene42839:CDS
GCTGTGCACACTTCAACAAG+TGG 0.625265 2.3:+8059942 MS.gene42839:CDS
TGATGAAATAAATCATGGCA+AGG 0.625497 2.3:+8060530 MS.gene42839:CDS
GATGCAGACCTACACTCAGA+TGG 0.626629 2.3:+8059895 MS.gene42839:CDS
GCTCAGTTAGGAAATCATCA+TGG 0.632715 2.3:+8059917 MS.gene42839:CDS
ATGAATGAATCATTGCTACA+TGG 0.633109 2.3:-8058305 None:intergenic
GTGTATTGGATTCCAGTAGG+TGG 0.634548 2.3:-8058338 None:intergenic
ACTGTGTATTGGATTCCAGT+AGG 0.641176 2.3:-8058341 None:intergenic
AATATACTTGAAGTCCAAAG+AGG 0.641505 2.3:-8059994 None:intergenic
GGGGTTTGGAATTTGTGTCG+TGG 0.643071 2.3:+8058562 MS.gene42839:CDS
TACTTGAAGTCCAAAGAGGT+AGG 0.655913 2.3:-8059990 None:intergenic
ACAGATGAGAGCAAGAGTGG+CGG 0.658907 2.3:+8057416 MS.gene42839:CDS
AAGAGACTCAAATTAGCACA+TGG 0.673591 2.3:+8060288 MS.gene42839:CDS
CATCAGTTACTAGAGCTGAA+CGG 0.684336 2.3:-8059876 None:intergenic
GATGTGCTCCTAAGTGATTG+TGG 0.690361 2.3:-8060417 None:intergenic
GCACCCTGTCAAGAAATGTG+AGG 0.706666 2.3:-8060152 None:intergenic
CAGTTAGGAAATCATCATGG+AGG 0.743788 2.3:+8059920 MS.gene42839:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTAATTTTTAAAAAAAG+TGG - chr2.3:8058825-8058844 None:intergenic 10.0%
!! ATCTATATATATGAAAATTC+AGG + chr2.3:8059845-8059864 MS.gene42839:intron 15.0%
!!! ATGATCATATTTTATATTGT+TGG + chr2.3:8057873-8057892 MS.gene42839:intron 15.0%
!!! TTTTATATTGTTGGTTAAAT+AGG + chr2.3:8057882-8057901 MS.gene42839:intron 15.0%
!! AACTTCAAATTACTATATAG+AGG - chr2.3:8057529-8057548 None:intergenic 20.0%
!! AATTAATCAACAAGTAGATA+AGG + chr2.3:8059489-8059508 MS.gene42839:intron 20.0%
!! ATAGAAAAGTTTGATATGTT+GGG + chr2.3:8057757-8057776 MS.gene42839:intron 20.0%
!! ATTTACATTGAGGATAATTT+GGG + chr2.3:8058530-8058549 MS.gene42839:CDS 20.0%
!! CAATGATTTCAATGATTATA+GGG + chr2.3:8060445-8060464 MS.gene42839:CDS 20.0%
!! TATAGAAAAGTTTGATATGT+TGG + chr2.3:8057756-8057775 MS.gene42839:intron 20.0%
!! TATTTACATTGAGGATAATT+TGG + chr2.3:8058529-8058548 MS.gene42839:CDS 20.0%
!! TTATATATAGAACTGTGTAT+TGG - chr2.3:8058355-8058374 None:intergenic 20.0%
!!! AATATGACTAACATAACTTT+TGG - chr2.3:8057577-8057596 None:intergenic 20.0%
!!! GTGCATACTTAATTTATTTT+GGG + chr2.3:8059056-8059075 MS.gene42839:intron 20.0%
! AAATATAAGCTAAGTGATAG+AGG - chr2.3:8059591-8059610 None:intergenic 25.0%
! ATGTTAGTCATATTCGAATT+TGG + chr2.3:8057583-8057602 MS.gene42839:intron 25.0%
! CTACTACAACAGAAATATTA+TGG + chr2.3:8059161-8059180 MS.gene42839:intron 25.0%
! CTATCACTTAGCTTATATTT+AGG + chr2.3:8059591-8059610 MS.gene42839:intron 25.0%
! GCAATGATTTCAATGATTAT+AGG + chr2.3:8060444-8060463 MS.gene42839:CDS 25.0%
! TAAAAAAAGTGGTTAGTACT+TGG - chr2.3:8058814-8058833 None:intergenic 25.0%
! TAGAAAAGTTTGATATGTTG+GGG + chr2.3:8057758-8057777 MS.gene42839:intron 25.0%
! TATATTAAGTTATTGAGCTC+AGG - chr2.3:8057677-8057696 None:intergenic 25.0%
! TGTTAGTCATATTCGAATTT+GGG + chr2.3:8057584-8057603 MS.gene42839:intron 25.0%
! TTACCTGATGAAATAAATCA+TGG + chr2.3:8060525-8060544 MS.gene42839:CDS 25.0%
! TTGATGAGTTAAAAGATGAA+AGG - chr2.3:8057484-8057503 None:intergenic 25.0%
! TTTATCACATCAATCAAAGT+AGG + chr2.3:8058167-8058186 MS.gene42839:intron 25.0%
!! ATAGCGTAGAATTCTTTTTA+AGG - chr2.3:8058924-8058943 None:intergenic 25.0%
!! CTCATCAAAATCATTTTGTT+TGG + chr2.3:8057496-8057515 MS.gene42839:intron 25.0%
!! GGTGCATACTTAATTTATTT+TGG + chr2.3:8059055-8059074 MS.gene42839:intron 25.0%
!! TATTGTTGGTTAAATAGGTA+TGG + chr2.3:8057887-8057906 MS.gene42839:intron 25.0%
!!! ATCAAGGAATATTTTTCAAC+TGG + chr2.3:8058459-8058478 MS.gene42839:CDS 25.0%
!!! TTATTTTGTGAAATCCATGT+GGG + chr2.3:8058846-8058865 MS.gene42839:intron 25.0%
AACAATTTCCACAATCACTT+AGG + chr2.3:8060409-8060428 MS.gene42839:CDS 30.0%
AATATACTTGAAGTCCAAAG+AGG - chr2.3:8059997-8060016 None:intergenic 30.0%
ACCATCTCATATGTACTTAT+GGG - chr2.3:8057729-8057748 None:intergenic 30.0%
AGAAAAGTTTGATATGTTGG+GGG + chr2.3:8057759-8057778 MS.gene42839:intron 30.0%
AGCATAGTCCTAATATCAAT+TGG + chr2.3:8058374-8058393 MS.gene42839:CDS 30.0%
ATAAGTTTCCCTTTCTTCAT+TGG + chr2.3:8057443-8057462 MS.gene42839:CDS 30.0%
ATGAATGAATCATTGCTACA+TGG - chr2.3:8058308-8058327 None:intergenic 30.0%
ATGTTGTCTGAAAATATGGT+TGG - chr2.3:8059229-8059248 None:intergenic 30.0%
CACCAAAACCAATTGATATT+AGG - chr2.3:8058385-8058404 None:intergenic 30.0%
CACTGGAATTATTTACATTG+AGG + chr2.3:8058520-8058539 MS.gene42839:CDS 30.0%
CAGACGAATAAGTGTATATT+CGG - chr2.3:8058194-8058213 None:intergenic 30.0%
CGGTAAATGACAAATTGTTT+GGG - chr2.3:8057614-8057633 None:intergenic 30.0%
CTATATGTTTCATCCTAGAA+TGG - chr2.3:8059285-8059304 None:intergenic 30.0%
CTTAAGTAATTGATGAACTC+CGG - chr2.3:8057634-8057653 None:intergenic 30.0%
GTGAATCTCATTACTAAGTA+GGG - chr2.3:8059722-8059741 None:intergenic 30.0%
GTTAGTCATATTCGAATTTG+GGG + chr2.3:8057585-8057604 MS.gene42839:intron 30.0%
TAATTAGAATCCTACCTCTT+TGG + chr2.3:8059980-8059999 MS.gene42839:CDS 30.0%
TACCATCTCATATGTACTTA+TGG - chr2.3:8057730-8057749 None:intergenic 30.0%
TATAATGCGATGTGTATAGA+AGG - chr2.3:8059693-8059712 None:intergenic 30.0%
TATTGTGAATAGCATATCAG+AGG + chr2.3:8059563-8059582 MS.gene42839:intron 30.0%
TCAAGAAATGTGAGGAAAAT+GGG - chr2.3:8060147-8060166 None:intergenic 30.0%
TGATGAAATAAATCATGGCA+AGG + chr2.3:8060530-8060549 MS.gene42839:CDS 30.0%
TGTGAATCTCATTACTAAGT+AGG - chr2.3:8059723-8059742 None:intergenic 30.0%
TTGCCATGATTTATTTCATC+AGG - chr2.3:8060531-8060550 None:intergenic 30.0%
TTTGACAAACTAGAACATCA+AGG + chr2.3:8058443-8058462 MS.gene42839:CDS 30.0%
TTTGAGAAAATGATGTCTAG+TGG - chr2.3:8059416-8059435 None:intergenic 30.0%
! ACCATATTTTCAGACAACAT+TGG + chr2.3:8059229-8059248 MS.gene42839:intron 30.0%
! ATGTTTCTATGTCTGTGTTA+TGG + chr2.3:8060313-8060332 MS.gene42839:CDS 30.0%
! CATTTTCTCAAAGACAAGAT+TGG + chr2.3:8059424-8059443 MS.gene42839:intron 30.0%
! CCAAACAATTTGTCATTTAC+CGG + chr2.3:8057612-8057631 MS.gene42839:intron 30.0%
! TAATAGAATGTAACTTGTCC+TGG - chr2.3:8060387-8060406 None:intergenic 30.0%
! TCAACGCTTACTCTTTTATT+TGG - chr2.3:8059755-8059774 None:intergenic 30.0%
!! AACTAGCTGGGATTTTAAAA+TGG - chr2.3:8060095-8060114 None:intergenic 30.0%
!! GTCCTAATATCAATTGGTTT+TGG + chr2.3:8058380-8058399 MS.gene42839:CDS 30.0%
!! GTTATTTTGTGAAATCCATG+TGG + chr2.3:8058845-8058864 MS.gene42839:intron 30.0%
!!! ACTAGCTGGGATTTTAAAAT+GGG - chr2.3:8060094-8060113 None:intergenic 30.0%
!!! CTAATATCAATTGGTTTTGG+TGG + chr2.3:8058383-8058402 MS.gene42839:CDS 30.0%
!!! TCTTTTTAAGGCTTGCATAT+GGG - chr2.3:8058912-8058931 None:intergenic 30.0%
!!! TGTTGGGTTATCGATTTTAT+CGG + chr2.3:8058612-8058631 MS.gene42839:CDS 30.0%
!!! TTCTTTTTAAGGCTTGCATA+TGG - chr2.3:8058913-8058932 None:intergenic 30.0%
AAGAGACTCAAATTAGCACA+TGG + chr2.3:8060288-8060307 MS.gene42839:CDS 35.0%
AAGCATCAATCTATTTCCAC+TGG + chr2.3:8058025-8058044 MS.gene42839:CDS 35.0%
ACAATTCCTTCCTATGTACA+AGG - chr2.3:8059536-8059555 None:intergenic 35.0%
ACATTGAGGATAATTTGGGT+TGG + chr2.3:8058534-8058553 MS.gene42839:CDS 35.0%
ACGAACGAAGTGATAATCTA+TGG - chr2.3:8059308-8059327 None:intergenic 35.0%
ATACCAACCAACACTAATTG+TGG - chr2.3:8060345-8060364 None:intergenic 35.0%
CATATTCTCCTTTCAATGCT+TGG - chr2.3:8059790-8059809 None:intergenic 35.0%
CATGACCAAGATATGACATT+AGG - chr2.3:8059082-8059101 None:intergenic 35.0%
CCGGTAAATGACAAATTGTT+TGG - chr2.3:8057615-8057634 None:intergenic 35.0%
CGAATATACACTTATTCGTC+TGG + chr2.3:8058192-8058211 MS.gene42839:intron 35.0%
CTCAAGTCAACTATAACACA+TGG + chr2.3:8058944-8058963 MS.gene42839:intron 35.0%
GATTACTATGGTAGTTCTTC+TGG + chr2.3:8058731-8058750 MS.gene42839:CDS 35.0%
GCCAATGTTGTCTGAAAATA+TGG - chr2.3:8059233-8059252 None:intergenic 35.0%
GTCAAGAAATGTGAGGAAAA+TGG - chr2.3:8060148-8060167 None:intergenic 35.0%
GTTAAATAGGTATGGTAGCA+GGG + chr2.3:8057895-8057914 MS.gene42839:intron 35.0%
TACTGGATGTTAGTAGTGTT+TGG + chr2.3:8060564-8060583 MS.gene42839:CDS 35.0%
TATAGCAATCCAAAGTAGCT+TGG + chr2.3:8060029-8060048 MS.gene42839:CDS 35.0%
TCCCATAAGTACATATGAGA+TGG + chr2.3:8057725-8057744 MS.gene42839:intron 35.0%
TCCCTCAATAAAAGTCTCAT+TGG + chr2.3:8058983-8059002 MS.gene42839:intron 35.0%
TTAGTCATGGATCGTTCTTT+AGG + chr2.3:8060066-8060085 MS.gene42839:CDS 35.0%
TTCATCCTAGAATGGAAAAC+TGG - chr2.3:8059277-8059296 None:intergenic 35.0%
TTGTTGCATCTATTCGTAAG+TGG + chr2.3:8058681-8058700 MS.gene42839:CDS 35.0%
TTTACGCACTAAATGTTGAG+AGG - chr2.3:8057816-8057835 None:intergenic 35.0%
TTTCCTCACATTTCTTGACA+GGG + chr2.3:8060149-8060168 MS.gene42839:CDS 35.0%
! AAGCTACTTTGGATTGCTAT+AGG - chr2.3:8060030-8060049 None:intergenic 35.0%
! AGCCAATGAGACTTTTATTG+AGG - chr2.3:8058988-8059007 None:intergenic 35.0%
! CATTGAGGATAATTTGGGTT+GGG + chr2.3:8058535-8058554 MS.gene42839:CDS 35.0%
! CTAATCCAGTTTTCCATTCT+AGG + chr2.3:8059269-8059288 MS.gene42839:intron 35.0%
! GCCAATGAGACTTTTATTGA+GGG - chr2.3:8058987-8059006 None:intergenic 35.0%
! GTTGTTTCCACAATTAGTGT+TGG + chr2.3:8060335-8060354 MS.gene42839:CDS 35.0%
! TGTACTTCAAGCTTTAGTCA+TGG + chr2.3:8060053-8060072 MS.gene42839:CDS 35.0%
! TTCACATTCTATGTTGCTTC+TGG + chr2.3:8058488-8058507 MS.gene42839:CDS 35.0%
! TTTTAACCTTTGCACATGCA+GGG + chr2.3:8058233-8058252 MS.gene42839:intron 35.0%
! TTTTCCTCACATTTCTTGAC+AGG + chr2.3:8060148-8060167 MS.gene42839:CDS 35.0%
!! ATCGTTGCTGATTCTTTCTT+TGG + chr2.3:8058056-8058075 MS.gene42839:CDS 35.0%
!! ATTTTAACCTTTGCACATGC+AGG + chr2.3:8058232-8058251 MS.gene42839:intron 35.0%
!! CAATTAGTGTTGGTTGGTAT+TGG + chr2.3:8060345-8060364 MS.gene42839:CDS 35.0%
!! GAAAGTTTCCAAGCATTGAA+AGG + chr2.3:8059779-8059798 MS.gene42839:intron 35.0%
!! GGTGTGGTTATTTTCTTGTT+GGG + chr2.3:8058596-8058615 MS.gene42839:CDS 35.0%
!! TGGATTAGCACATAGATAAG+TGG - chr2.3:8059257-8059276 None:intergenic 35.0%
!! TGGTGTGGTTATTTTCTTGT+TGG + chr2.3:8058595-8058614 MS.gene42839:CDS 35.0%
!! TTTCCACAATTAGTGTTGGT+TGG + chr2.3:8060339-8060358 MS.gene42839:CDS 35.0%
!!! CTAGCTGGGATTTTAAAATG+GGG - chr2.3:8060093-8060112 None:intergenic 35.0%
!!! GTTGGGTTATCGATTTTATC+GGG + chr2.3:8058613-8058632 MS.gene42839:CDS 35.0%
AATCAGTACTCCTACGAACT+TGG - chr2.3:8060503-8060522 None:intergenic 40.0%
ACCATAGTAATCCTCTACTC+TGG - chr2.3:8058723-8058742 None:intergenic 40.0%
ACTGTGTATTGGATTCCAGT+AGG - chr2.3:8058344-8058363 None:intergenic 40.0%
ACTTCAGATCGGAAATTCAC+TGG + chr2.3:8059034-8059053 MS.gene42839:intron 40.0%
AGAGAGAGACCAATGAAGAA+AGG - chr2.3:8057455-8057474 None:intergenic 40.0%
ATGACAGAAACAGAACTAGC+TGG - chr2.3:8060108-8060127 None:intergenic 40.0%
ATTCCTTCCTATGTACAAGG+AGG - chr2.3:8059533-8059552 None:intergenic 40.0%
CAACAGTTGCTTCAAGAACT+TGG + chr2.3:8059187-8059206 MS.gene42839:intron 40.0%
CAGTTAGGAAATCATCATGG+AGG + chr2.3:8059920-8059939 MS.gene42839:CDS 40.0%
CATCAGTTACTAGAGCTGAA+CGG - chr2.3:8059879-8059898 None:intergenic 40.0%
CTTTAATCGACCAAGTTCGT+AGG + chr2.3:8060490-8060509 MS.gene42839:CDS 40.0%
GAAAGAATCAGCAACGATTG+CGG - chr2.3:8058054-8058073 None:intergenic 40.0%
GAATCATTGCTACATGGATG+AGG - chr2.3:8058302-8058321 None:intergenic 40.0%
GAGAGAGACCAATGAAGAAA+GGG - chr2.3:8057454-8057473 None:intergenic 40.0%
GCAAGGTAGATAATGTGTAC+TGG + chr2.3:8060547-8060566 MS.gene42839:CDS 40.0%
GCACTTGAACCAAAACATCA+TGG - chr2.3:8058757-8058776 None:intergenic 40.0%
GCTAATAATGTGAACCCACA+TGG - chr2.3:8058863-8058882 None:intergenic 40.0%
GCTCAGTTAGGAAATCATCA+TGG + chr2.3:8059917-8059936 MS.gene42839:CDS 40.0%
GGTTAAATAGGTATGGTAGC+AGG + chr2.3:8057894-8057913 MS.gene42839:intron 40.0%
TAACACCGGGAAAAGGATTA+AGG + chr2.3:8058786-8058805 MS.gene42839:CDS 40.0%
TACTTGAAGTCCAAAGAGGT+AGG - chr2.3:8059993-8060012 None:intergenic 40.0%
TCATTCACCTCCTTGTACAT+AGG + chr2.3:8059523-8059542 MS.gene42839:intron 40.0%
TCCAGAGTAGAGGATTACTA+TGG + chr2.3:8058719-8058738 MS.gene42839:CDS 40.0%
TGACAGAAACAGAACTAGCT+GGG - chr2.3:8060107-8060126 None:intergenic 40.0%
TGGATGTTAGTAGTGTTTGG+AGG + chr2.3:8060567-8060586 MS.gene42839:CDS 40.0%
TTGGGCCTAATGTCATATCT+TGG + chr2.3:8059074-8059093 MS.gene42839:intron 40.0%
! GAGACTTTTATTGAGGGACT+TGG - chr2.3:8058981-8059000 None:intergenic 40.0%
! GGAGAAGCTTTTCATTTTCC+AGG + chr2.3:8060366-8060385 MS.gene42839:CDS 40.0%
! GGATTGCTATAGGAGTTGAT+AGG - chr2.3:8060020-8060039 None:intergenic 40.0%
! TGGCTTTTGTGATGCAGATT+GGG + chr2.3:8059003-8059022 MS.gene42839:intron 40.0%
! TGGTACCTTAATCCTTTTCC+CGG - chr2.3:8058794-8058813 None:intergenic 40.0%
! TTCTTCTGGCCATGATGTTT+TGG + chr2.3:8058745-8058764 MS.gene42839:CDS 40.0%
!! AAGTTCGTAGGAGTACTGAT+TGG + chr2.3:8060502-8060521 MS.gene42839:CDS 40.0%
!! ATAATTTGGGTTGGGCTTTG+GGG + chr2.3:8058543-8058562 MS.gene42839:CDS 40.0%
!! GATAATTTGGGTTGGGCTTT+GGG + chr2.3:8058542-8058561 MS.gene42839:CDS 40.0%
!! GCTCTCATCTGTTTCTTTTG+AGG - chr2.3:8057408-8057427 None:intergenic 40.0%
!! TTCTTCTTGTGTTGCTTTGC+TGG + chr2.3:8058100-8058119 MS.gene42839:CDS 40.0%
!! TTGGCTTTTGTGATGCAGAT+TGG + chr2.3:8059002-8059021 MS.gene42839:intron 40.0%
!!! AGGAAGTGCAGTTTTGGATT+TGG + chr2.3:8058649-8058668 MS.gene42839:CDS 40.0%
!!! GGAAGTGCAGTTTTGGATTT+GGG + chr2.3:8058650-8058669 MS.gene42839:CDS 40.0%
AAGATACCTCCATCTTGAGG+GGG + chr2.3:8059455-8059474 MS.gene42839:intron 45.0%
ACGCACTAAATGTTGAGAGG+CGG - chr2.3:8057813-8057832 None:intergenic 45.0%
ATTACATGCAAGCCACCTAC+TGG + chr2.3:8058326-8058345 MS.gene42839:CDS 45.0%
ATTGTTCCCTGCATGTGCAA+AGG - chr2.3:8058242-8058261 None:intergenic 45.0%
CCAGTAATCTTATGCCAACC+TGG - chr2.3:8060183-8060202 None:intergenic 45.0%
CCTACTCCTATTCGTTGAAG+CGG - chr2.3:8060219-8060238 None:intergenic 45.0%
CGAAGATACCTCCATCTTGA+GGG + chr2.3:8059453-8059472 MS.gene42839:intron 45.0%
CTTGCATATGGGTCATTGTG+GGG - chr2.3:8058901-8058920 None:intergenic 45.0%
GAAACAGATGAGAGCAAGAG+TGG + chr2.3:8057413-8057432 MS.gene42839:CDS 45.0%
GAAGATACCTCCATCTTGAG+GGG + chr2.3:8059454-8059473 MS.gene42839:intron 45.0%
GAAGTACAGCCAAGCTACTT+TGG - chr2.3:8060041-8060060 None:intergenic 45.0%
GATGTGCTCCTAAGTGATTG+TGG - chr2.3:8060420-8060439 None:intergenic 45.0%
GCTTGCATATGGGTCATTGT+GGG - chr2.3:8058902-8058921 None:intergenic 45.0%
GTGTATTGGATTCCAGTAGG+TGG - chr2.3:8058341-8058360 None:intergenic 45.0%
TAACTGAGCCATCTGAGTGT+AGG - chr2.3:8059906-8059925 None:intergenic 45.0%
TAAGCTCTCATCCAGAGTAG+AGG + chr2.3:8058709-8058728 MS.gene42839:CDS 45.0%
TACACTCAGATGGCTCAGTT+AGG + chr2.3:8059905-8059924 MS.gene42839:CDS 45.0%
TATCGGGCTGAAAAGCTACA+AGG + chr2.3:8058629-8058648 MS.gene42839:CDS 45.0%
TCACCTCCTTGTACATAGGA+AGG + chr2.3:8059527-8059546 MS.gene42839:intron 45.0%
TCGAAGATACCTCCATCTTG+AGG + chr2.3:8059452-8059471 MS.gene42839:intron 45.0%
TCTAGTGGCAGATAGAGGTT+TGG - chr2.3:8059401-8059420 None:intergenic 45.0%
TGATGTCTAGTGGCAGATAG+AGG - chr2.3:8059406-8059425 None:intergenic 45.0%
TGGTGAGCAAATCAGCTAGT+TGG - chr2.3:8059381-8059400 None:intergenic 45.0%
TTGCATATGGGTCATTGTGG+GGG - chr2.3:8058900-8058919 None:intergenic 45.0%
! CCAGGTTGGCATAAGATTAC+TGG + chr2.3:8060180-8060199 MS.gene42839:CDS 45.0%
! TTTTGTGATGCAGATTGGGC+TGG + chr2.3:8059007-8059026 MS.gene42839:intron 45.0%
!! AATCCTTTTCCCGGTGTTAG+CGG - chr2.3:8058785-8058804 None:intergenic 45.0%
!! GCTACAAGGAAGTGCAGTTT+TGG + chr2.3:8058643-8058662 MS.gene42839:CDS 45.0%
!! GGACATGTGTTGACTGTTCT+TGG + chr2.3:8060237-8060256 MS.gene42839:CDS 45.0%
!! GGATAATTTGGGTTGGGCTT+TGG + chr2.3:8058541-8058560 MS.gene42839:CDS 45.0%
!! TCAGCTAGTTGGTGACTTGT+CGG - chr2.3:8059370-8059389 None:intergenic 45.0%
!! TGTGTTGACTGTTCTTGGCA+TGG + chr2.3:8060242-8060261 MS.gene42839:CDS 45.0%
!!! TGTGTCGTGGCTACTTTTGT+TGG + chr2.3:8058575-8058594 MS.gene42839:CDS 45.0%
ACAGATGAGAGCAAGAGTGG+CGG + chr2.3:8057416-8057435 MS.gene42839:CDS 50.0%
CCGCTTCAACGAATAGGAGT+AGG + chr2.3:8060216-8060235 MS.gene42839:CDS 50.0%
CCTATTCGTTGAAGCGGCAT+AGG - chr2.3:8060213-8060232 None:intergenic 50.0%
CGCACTAAATGTTGAGAGGC+GGG - chr2.3:8057812-8057831 None:intergenic 50.0%
CGGGGGAATTGTGGGAAATT+TGG + chr2.3:8057932-8057951 MS.gene42839:CDS 50.0%
CGTTTCACTGCAGCATCACT+AGG + chr2.3:8058410-8058429 MS.gene42839:CDS 50.0%
GATGCAGACCTACACTCAGA+TGG + chr2.3:8059895-8059914 MS.gene42839:CDS 50.0%
GCACCCTGTCAAGAAATGTG+AGG - chr2.3:8060155-8060174 None:intergenic 50.0%
GCACTAAATGTTGAGAGGCG+GGG - chr2.3:8057811-8057830 None:intergenic 50.0%
GCTGTGCACACTTCAACAAG+TGG + chr2.3:8059942-8059961 MS.gene42839:CDS 50.0%
GGCTTGCATATGGGTCATTG+TGG - chr2.3:8058903-8058922 None:intergenic 50.0%
GGGCTGGAGATACTTCAGAT+CGG + chr2.3:8059023-8059042 MS.gene42839:intron 50.0%
TACAGTCGCACGATCGTCAA+CGG + chr2.3:8059114-8059133 MS.gene42839:intron 50.0%
! CCTATGCCGCTTCAACGAAT+AGG + chr2.3:8060210-8060229 MS.gene42839:CDS 50.0%
! GGGGTTTGGAATTTGTGTCG+TGG + chr2.3:8058562-8058581 MS.gene42839:CDS 50.0%
!!! CGTGGCTACTTTTGTTGGTG+TGG + chr2.3:8058580-8058599 MS.gene42839:CDS 50.0%
ACTTGGAAGCGGGGGAATTG+TGG + chr2.3:8057923-8057942 MS.gene42839:CDS 55.0%
ATGAGAGCAAGAGTGGCGGT+TGG + chr2.3:8057420-8057439 MS.gene42839:CDS 55.0%
ATGGTAGCAGGGTCGTCACT+TGG + chr2.3:8057906-8057925 MS.gene42839:CDS 55.0%
CTAAATGTTGAGAGGCGGGG+AGG - chr2.3:8057808-8057827 None:intergenic 55.0%
CTTGGAAGCGGGGGAATTGT+GGG + chr2.3:8057924-8057943 MS.gene42839:CDS 55.0%
GTTGACGATCGTGCGACTGT+AGG - chr2.3:8059115-8059134 None:intergenic 55.0%
TATACGCCCCCTCAAGATGG+AGG - chr2.3:8059464-8059483 None:intergenic 55.0%
TCCTATACGCCCCCTCAAGA+TGG - chr2.3:8059467-8059486 None:intergenic 55.0%
! TCCATCTTGAGGGGGCGTAT+AGG + chr2.3:8059463-8059482 MS.gene42839:intron 55.0%
!! ACAGGGTGCTATTGCCAGGT+TGG + chr2.3:8060166-8060185 MS.gene42839:CDS 55.0%
!! CTTGACAGGGTGCTATTGCC+AGG + chr2.3:8060162-8060181 MS.gene42839:CDS 55.0%
!! GCTTCTGGAGCTGCATTCAC+TGG + chr2.3:8058503-8058522 MS.gene42839:CDS 55.0%
!! TTGGGTTGGGCTTTGGGGTT+TGG + chr2.3:8058548-8058567 MS.gene42839:CDS 55.0%
AGGGTCGTCACTTGGAAGCG+GGG + chr2.3:8057914-8057933 MS.gene42839:CDS 60.0%
AGTGCTGCCTCCGCTAACAC+CGG + chr2.3:8058772-8058791 MS.gene42839:CDS 60.0%
CAGGGTCGTCACTTGGAAGC+GGG + chr2.3:8057913-8057932 MS.gene42839:CDS 60.0%
CCTCCGCTAACACCGGGAAA+AGG + chr2.3:8058779-8058798 MS.gene42839:CDS 60.0%
GCAACGATTGCGGCAACCAG+TGG - chr2.3:8058044-8058063 None:intergenic 60.0%
GCAGGGTCGTCACTTGGAAG+CGG + chr2.3:8057912-8057931 MS.gene42839:CDS 60.0%
!! CCTTTTCCCGGTGTTAGCGG+AGG - chr2.3:8058782-8058801 None:intergenic 60.0%
GGGTCGTCACTTGGAAGCGG+GGG + chr2.3:8057915-8057934 MS.gene42839:CDS 65.0%
GTGCTGCCTCCGCTAACACC+GGG + chr2.3:8058773-8058792 MS.gene42839:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 8057383 8060647 8057383 ID=MS.gene42839
chr2.3 mRNA 8057383 8060647 8057383 ID=MS.gene42839.t1;Parent=MS.gene42839
chr2.3 exon 8057383 8057464 8057383 ID=MS.gene42839.t1.exon1;Parent=MS.gene42839.t1
chr2.3 CDS 8057383 8057464 8057383 ID=cds.MS.gene42839.t1;Parent=MS.gene42839.t1
chr2.3 exon 8057904 8058121 8057904 ID=MS.gene42839.t1.exon2;Parent=MS.gene42839.t1
chr2.3 CDS 8057904 8058121 8057904 ID=cds.MS.gene42839.t1;Parent=MS.gene42839.t1
chr2.3 exon 8058254 8058807 8058254 ID=MS.gene42839.t1.exon3;Parent=MS.gene42839.t1
chr2.3 CDS 8058254 8058807 8058254 ID=cds.MS.gene42839.t1;Parent=MS.gene42839.t1
chr2.3 exon 8059867 8060647 8059867 ID=MS.gene42839.t1.exon4;Parent=MS.gene42839.t1
chr2.3 CDS 8059867 8060647 8059867 ID=cds.MS.gene42839.t1;Parent=MS.gene42839.t1
Gene Sequence

>MS.gene42839

ATGGATGGTAAGCTAGCAGCATCCTCAAAAGAAACAGATGAGAGCAAGAGTGGCGGTTGGATAAGTTTCCCTTTCTTCATTGGTCTCTCTCTCTTTTTCCTTTCATCTTTTAACTCATCAAAATCATTTTGTTTGGTTTTATTCCTCTATATAGTAATTTGAAGTTCAGACGACATGTAAGTAAAGTATGACCAAAAGTTATGTTAGTCATATTCGAATTTGGGGTTTCCCAAACAATTTGTCATTTACCGGAGTTCATCAATTACTTAAGCTTATAAAAGAAACTAATTACCTGAGCTCAATAACTTAATATACACACACGTAAAAAGCATGATCATATTGTCCCATAAGTACATATGAGATGGTAAAAAACTATAGAAAAGTTTGATATGTTGGGGGCGTGTGTTCGAATCTGCAACTTTCCTCCCCGCCTCTCAACATTTAGTGCGTAAATTTCGCTGCTAGTCTCATTGTAACAGAAAAAGAAAGCATGATCATATTTTATATTGTTGGTTAAATAGGTATGGTAGCAGGGTCGTCACTTGGAAGCGGGGGAATTGTGGGAAATTTGGTTGTATATCTTATACAAGAATTCAATATAAAGAGCATCATTGCTGCTCAGATTGTAAACATTGTTATCAGAAGCATCAATCTATTTCCACTGGTTGCCGCAATCGTTGCTGATTCTTTCTTTGGCTCTTTCTCTGTTGCATTTGCTTCTTCTTGTGTTGCTTTGCTGGTAAGCTTCAACACTAAGCGAGAATTTTTTAATCATATTTCATATTTTATCACATCAATCAAAGTAGGACCGAATATACACTTATTCGTCTGGTAACAATTCTCTTTTAAATTTTAACCTTTGCACATGCAGGGAACAATTATTTTGTTTTTGACAGCAACGATCGATTCGTTAAAGCCTCATCCATGTAGCAATGATTCATTCATTACATGCAAGCCACCTACTGGAATCCAATACACAGTTCTATATATAAGCATAGTCCTAATATCAATTGGTTTTGGTGGTTCACGTTTCACTGCAGCATCACTAGGAGCAAATCAATTTGACAAACTAGAACATCAAGGAATATTTTTCAACTGGTACTTTTTCACATTCTATGTTGCTTCTGGAGCTGCATTCACTGGAATTATTTACATTGAGGATAATTTGGGTTGGGCTTTGGGGTTTGGAATTTGTGTCGTGGCTACTTTTGTTGGTGTGGTTATTTTCTTGTTGGGTTATCGATTTTATCGGGCTGAAAAGCTACAAGGAAGTGCAGTTTTGGATTTGGGACGTGTTTTTGTTGCATCTATTCGTAAGTGGAAGTGTAAGCTCTCATCCAGAGTAGAGGATTACTATGGTAGTTCTTCTGGCCATGATGTTTTGGTTCAAGTGCTGCCTCCGCTAACACCGGGAAAAGGATTAAGGTACCAAGTACTAACCACTTTTTTTAAAAATTACTTAGTTATTTTGTGAAATCCATGTGGGTTCACATTATTAGCTCAAAACATGCAAGCCCCCACAATGACCCATATGCAAGCCTTAAAAAGAATTCTACGCTATCTCAAGTCAACTATAACACATGGACTTCATCTCACCAAGTCCCTCAATAAAAGTCTCATTGGCTTTTGTGATGCAGATTGGGCTGGAGATACTTCAGATCGGAAATTCACTGGTGCATACTTAATTTATTTTGGGCCTAATGTCATATCTTGGTCATGCAAAAAGCAACCTACAGTCGCACGATCGTCAACGGAAGCTGAGTATCGCACAATTGCAACTACTACAACAGAAATATTATGGATTCAACAGTTGCTTCAAGAACTTGGAATTCAAATTACTGCTCCAACCATATTTTCAGACAACATTGGCGCCACTTATCTATGTGCTAATCCAGTTTTCCATTCTAGGATGAAACATATAGCCATAGATTATCACTTCGTTCGTGATCTTGTCATTGAAAAGAAGCTGCAAGTTTCACATGTTCCGACAAGTCACCAACTAGCTGATTTGCTCACCAAACCTCTATCTGCCACTAGACATCATTTTCTCAAAGACAAGATTGGAGTTCTCGAAGATACCTCCATCTTGAGGGGGCGTATAGGAGTAATTAATCAACAAGTAGATAAGGATTCATAGTCATCATTCACCTCCTTGTACATAGGAAGGAATTGTGCAACTGTATTGTGAATAGCATATCAGAGGCTCCTCTATCACTTAGCTTATATTTAGGAGTTAGTTGCTTATTAGTTTATATATATATACAACTGATGTACATCATATATTATTATTCAAATATACAGATTGTTCCTTCTATACACATCGCATTATAAATTTACCCTACTTAGTAATGAGATTCACATGATTTTTACCAAATAAAAGAGTAAGCGTTGAAAATGAAAGTTTCCAAGCATTGAAAGGAGAATATGCTTGTAAATTTCTGCTATATAGTAACAATGTGTTGATCTATATATATGAAAATTCAGGTTCTTCAACCGTTCAGCTCTAGTAACTGATGCAGACCTACACTCAGATGGCTCAGTTAGGAAATCATCATGGAGGCTGTGCACACTTCAACAAGTGGAAGATTTTAAAAAAATAATTAGAATCCTACCTCTTTGGACTTCAAGTATATTCCTATCAACTCCTATAGCAATCCAAAGTAGCTTGGCTGTACTTCAAGCTTTAGTCATGGATCGTTCTTTAGGACCCCATTTTAAAATCCCAGCTAGTTCTGTTTCTGTCATAGTCTTAATATCAGCACCCATTTTCCTCACATTTCTTGACAGGGTGCTATTGCCAGGTTGGCATAAGATTACTGGAAAAACGCCTATGCCGCTTCAACGAATAGGAGTAGGACATGTGTTGACTGTTCTTGGCATGGTTGTCTCTGCTCTTGTTGAATCAAAGAGACTCAAATTAGCACATGGACATGTTTCTATGTCTGTGTTATGGTTGTTTCCACAATTAGTGTTGGTTGGTATTGGAGAAGCTTTTCATTTTCCAGGACAAGTTACATTCTATTATCAACAATTTCCACAATCACTTAGGAGCACATCAACAGCAATGATTTCAATGATTATAGGGATTGCTTTTTACTTGAGCGCTGCTTTAATCGACCAAGTTCGTAGGAGTACTGATTGGTTACCTGATGAAATAAATCATGGCAAGGTAGATAATGTGTACTGGATGTTAGTAGTGTTTGGAGGTATCAACTTTGTGTATTACTTACTGTGCTCTATTTCTTACAAGTATGAAAATGTTTAA
Protein sequence

>MS.gene42839.t1

MDGKLAASSKETDESKSGGWISFPFFIGMVAGSSLGSGGIVGNLVVYLIQEFNIKSIIAAQIVNIVIRSINLFPLVAAIVADSFFGSFSVAFASSCVALLGTIILFLTATIDSLKPHPCSNDSFITCKPPTGIQYTVLYISIVLISIGFGGSRFTAASLGANQFDKLEHQGIFFNWYFFTFYVASGAAFTGIIYIEDNLGWALGFGICVVATFVGVVIFLLGYRFYRAEKLQGSAVLDLGRVFVASIRKWKCKLSSRVEDYYGSSSGHDVLVQVLPPLTPGKGLRFFNRSALVTDADLHSDGSVRKSSWRLCTLQQVEDFKKIIRILPLWTSSIFLSTPIAIQSSLAVLQALVMDRSLGPHFKIPASSVSVIVLISAPIFLTFLDRVLLPGWHKITGKTPMPLQRIGVGHVLTVLGMVVSALVESKRLKLAHGHVSMSVLWLFPQLVLVGIGEAFHFPGQVTFYYQQFPQSLRSTSTAMISMIIGIAFYLSAALIDQVRRSTDWLPDEINHGKVDNVYWMLVVFGGINFVYYLLCSISYKYENV