AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42840.t1 MTR_2g093640 92.545 550 40 1 1 550 1 549 0.0 979
MS.gene42840.t1 MTR_2g093160 83.818 550 88 1 1 550 1 549 0.0 926
MS.gene42840.t1 MTR_2g093180 81.125 551 102 2 1 550 1 550 0.0 867
MS.gene42840.t1 MTR_4g107530 34.483 580 345 9 2 550 8 583 2.28e-111 344
MS.gene42840.t1 MTR_4g107580 34.370 579 340 11 1 548 4 573 8.33e-106 330
MS.gene42840.t1 MTR_5g038060 34.458 563 342 8 9 548 19 577 1.14e-105 330
MS.gene42840.t1 MTR_4g107510 34.812 586 327 12 8 550 13 586 1.23e-105 329
MS.gene42840.t1 MTR_8g469480 34.588 558 322 11 24 550 41 586 3.45e-100 315
MS.gene42840.t1 MTR_2g101650 35.512 566 326 13 13 550 14 568 1.00e-98 311
MS.gene42840.t1 MTR_4g011280 34.103 563 334 13 9 545 18 569 5.06e-97 307
MS.gene42840.t1 MTR_2g101590 34.912 570 328 14 5 545 10 565 8.30e-97 307
MS.gene42840.t1 MTR_5g055000 33.092 553 341 10 20 550 17 562 9.01e-97 306
MS.gene42840.t1 MTR_3g112460 32.855 557 348 9 1 542 1 546 1.10e-95 303
MS.gene42840.t1 MTR_2g101610 34.622 569 329 14 6 545 12 566 1.93e-95 304
MS.gene42840.t1 MTR_4g107610 32.176 547 347 7 17 543 27 569 3.78e-95 302
MS.gene42840.t1 MTR_1g026740 35.035 568 327 15 5 545 1 553 6.00e-95 301
MS.gene42840.t1 MTR_7g088825 32.021 559 348 11 14 548 15 565 1.49e-94 301
MS.gene42840.t1 MTR_2g101640 34.495 574 335 14 1 545 1 562 4.41e-94 300
MS.gene42840.t1 MTR_3g112470 33.032 554 342 9 2 542 9 546 6.31e-94 298
MS.gene42840.t1 MTR_1g057460 34.588 558 326 13 6 545 28 564 1.07e-92 295
MS.gene42840.t1 MTR_3g462710 31.851 562 339 12 17 550 20 565 3.35e-91 291
MS.gene42840.t1 MTR_8g469470 32.675 557 343 11 20 549 31 582 3.50e-91 291
MS.gene42840.t1 MTR_7g067010 31.162 568 358 9 2 550 10 563 3.58e-90 288
MS.gene42840.t1 MTR_5g038190 30.797 552 353 11 20 548 23 568 1.22e-89 287
MS.gene42840.t1 MTR_7g088790 31.922 567 358 10 4 548 12 572 1.99e-89 287
MS.gene42840.t1 MTR_1g026750 34.875 562 327 13 10 545 6 554 4.36e-89 285
MS.gene42840.t1 MTR_8g103233 33.091 550 332 12 20 545 16 553 7.29e-89 285
MS.gene42840.t1 MTR_2g101560 33.627 568 336 12 6 545 12 566 1.25e-88 286
MS.gene42840.t1 MTR_7g088820 30.880 557 359 9 13 548 17 568 1.31e-88 285
MS.gene42840.t1 MTR_3g069500 31.919 542 343 8 21 550 35 562 6.29e-88 283
MS.gene42840.t1 MTR_5g012270 32.072 555 341 10 21 549 29 573 9.49e-88 282
MS.gene42840.t1 MTR_7g065080 31.111 540 348 8 23 550 33 560 8.53e-86 277
MS.gene42840.t1 MTR_4g019580 32.014 556 343 10 18 550 28 571 2.51e-85 276
MS.gene42840.t1 MTR_7g098090 30.270 555 349 10 21 548 33 576 1.30e-84 275
MS.gene42840.t1 MTR_7g098160 29.636 550 354 9 21 548 33 571 1.37e-84 275
MS.gene42840.t1 MTR_1g009200 32.971 552 329 12 21 545 27 564 3.36e-84 273
MS.gene42840.t1 MTR_3g112450 31.383 564 357 12 1 546 1 552 4.15e-84 272
MS.gene42840.t1 MTR_1g057460 33.852 514 302 12 49 545 1 493 6.73e-84 270
MS.gene42840.t1 MTR_4g015080 29.893 562 348 9 17 550 30 573 9.33e-84 271
MS.gene42840.t1 MTR_4g101380 31.153 581 353 12 2 549 8 574 9.51e-84 272
MS.gene42840.t1 MTR_7g098200 30.237 549 350 9 23 549 31 568 1.64e-83 271
MS.gene42840.t1 MTR_4g114340 32.182 550 341 10 17 546 20 557 2.27e-83 271
MS.gene42840.t1 MTR_3g069440 31.273 550 346 8 21 550 33 570 3.24e-83 271
MS.gene42840.t1 MTR_7g098040 29.091 550 357 11 21 548 34 572 3.96e-83 271
MS.gene42840.t1 MTR_1g026770 32.743 565 341 13 5 545 1 550 7.72e-83 269
MS.gene42840.t1 MTR_3g014790 31.541 558 325 10 22 549 18 548 9.11e-83 268
MS.gene42840.t1 MTR_7g098200 29.872 549 342 10 23 549 31 558 9.26e-83 270
MS.gene42840.t1 MTR_5g012290 32.092 564 346 13 10 549 21 571 2.06e-82 268
MS.gene42840.t1 MTR_7g098180 30.396 556 347 12 21 550 31 572 2.51e-82 268
MS.gene42840.t1 MTR_7g098220 31.076 576 349 12 2 550 16 570 4.20e-82 268
MS.gene42840.t1 MTR_7g064780 31.993 572 351 13 8 549 6 569 1.09e-81 266
MS.gene42840.t1 MTR_1g075440 29.739 575 354 10 2 548 14 566 2.44e-81 266
MS.gene42840.t1 MTR_1g042310 30.017 573 355 11 2 548 12 564 5.84e-81 265
MS.gene42840.t1 MTR_8g038880 31.228 570 341 11 9 550 6 552 1.42e-80 263
MS.gene42840.t1 MTR_7g098230 30.451 532 337 10 40 549 45 565 2.44e-80 263
MS.gene42840.t1 MTR_4g033325 34.291 557 305 15 21 550 31 553 9.74e-80 260
MS.gene42840.t1 MTR_5g014150 31.418 557 348 11 18 546 36 586 1.04e-79 262
MS.gene42840.t1 MTR_7g065080 31.612 484 307 8 79 550 2 473 1.19e-79 258
MS.gene42840.t1 MTR_3g072300 30.420 572 355 12 2 549 10 562 1.70e-79 261
MS.gene42840.t1 MTR_7g005930 29.137 556 371 8 6 546 20 567 1.79e-79 261
MS.gene42840.t1 MTR_7g098220 31.413 538 326 11 40 550 5 526 2.63e-79 259
MS.gene42840.t1 MTR_1g042310 30.280 535 332 10 40 548 1 520 6.96e-79 258
MS.gene42840.t1 MTR_1g042310 30.280 535 332 10 40 548 8 527 8.52e-79 258
MS.gene42840.t1 MTR_0236s0050 32.749 513 309 11 49 545 1 493 3.11e-78 255
MS.gene42840.t1 MTR_7g088820 30.315 508 328 9 62 548 4 506 1.10e-77 254
MS.gene42840.t1 MTR_7g064800 31.387 548 351 8 15 540 20 564 2.09e-77 255
MS.gene42840.t1 MTR_4g098800 31.157 536 338 10 39 549 54 583 2.38e-77 255
MS.gene42840.t1 MTR_4g098800 31.157 536 338 10 39 549 119 648 1.06e-76 255
MS.gene42840.t1 MTR_3g462710 32.623 469 272 12 109 549 3 455 1.39e-76 249
MS.gene42840.t1 MTR_0294s0020 32.168 572 328 12 1 549 16 550 3.67e-76 251
MS.gene42840.t1 MTR_4g033315 31.993 572 331 15 1 549 16 552 4.09e-75 248
MS.gene42840.t1 MTR_4g033310 31.993 572 331 15 1 549 16 552 4.09e-75 248
MS.gene42840.t1 MTR_1g116930 29.946 551 359 11 17 550 19 559 1.07e-74 248
MS.gene42840.t1 MTR_7g013270 29.358 545 360 8 19 546 88 624 4.12e-74 248
MS.gene42840.t1 MTR_1g041875 28.437 531 340 9 21 529 29 541 7.66e-74 246
MS.gene42840.t1 MTR_4g033395 33.075 517 289 12 1 497 17 496 2.54e-73 242
MS.gene42840.t1 MTR_1g041835 28.520 554 354 9 21 548 27 564 3.66e-73 244
MS.gene42840.t1 MTR_3g069420 30.991 555 337 10 23 550 36 571 4.01e-73 244
MS.gene42840.t1 MTR_4g033330 33.396 533 302 13 21 530 31 533 6.56e-73 242
MS.gene42840.t1 MTR_1g041815 28.970 573 360 10 2 548 13 564 6.90e-73 243
MS.gene42840.t1 MTR_4g033375 32.558 516 293 11 1 497 17 496 1.95e-72 240
MS.gene42840.t1 MTR_7g010820 31.402 535 333 9 39 547 44 570 7.69e-71 238
MS.gene42840.t1 MTR_5g085850 28.729 543 364 9 17 548 26 556 9.37e-71 238
MS.gene42840.t1 MTR_2g005130 28.624 545 359 7 17 548 36 563 2.23e-70 237
MS.gene42840.t1 MTR_1g041885 27.470 506 343 8 40 531 1 496 2.46e-70 235
MS.gene42840.t1 MTR_7g088820 30.519 462 295 9 108 548 2 458 3.93e-70 233
MS.gene42840.t1 MTR_7g098200 30.454 463 289 9 109 549 3 454 4.71e-70 233
MS.gene42840.t1 MTR_2g017750 29.314 539 350 11 39 548 52 588 1.01e-68 233
MS.gene42840.t1 MTR_3g005010 28.442 552 333 11 23 550 32 545 4.93e-68 229
MS.gene42840.t1 MTR_4g033325 34.389 442 241 13 136 550 10 429 2.86e-67 224
MS.gene42840.t1 MTR_7g098150 30.588 425 275 6 21 436 33 446 4.79e-67 225
MS.gene42840.t1 MTR_4g033325 34.389 442 241 13 136 550 36 455 5.77e-67 224
MS.gene42840.t1 MTR_3g100980 26.930 557 362 12 20 550 15 552 1.43e-66 226
MS.gene42840.t1 MTR_5g038380 27.128 564 358 13 21 548 28 574 4.79e-66 225
MS.gene42840.t1 MTR_7g111260 27.869 549 358 13 20 549 18 547 7.44e-65 222
MS.gene42840.t1 MTR_4g033385 32.812 448 252 12 129 549 28 453 2.69e-64 217
MS.gene42840.t1 MTR_4g123537 28.345 568 369 14 2 549 22 571 5.51e-62 215
MS.gene42840.t1 MTR_8g469310 26.964 560 363 16 21 548 26 571 1.40e-61 213
MS.gene42840.t1 MTR_2g093650 59.043 188 34 2 339 526 34 178 2.84e-61 201
MS.gene42840.t1 MTR_3g100980 25.641 585 362 13 20 550 15 580 1.02e-60 211
MS.gene42840.t1 MTR_1g085090 26.502 566 368 17 10 549 4 547 1.35e-60 211
MS.gene42840.t1 MTR_4g107670 26.362 569 357 15 22 549 25 572 4.23e-60 209
MS.gene42840.t1 MTR_8g087780 26.215 576 390 10 1 548 6 574 1.74e-58 204
MS.gene42840.t1 MTR_8g091265 71.756 131 32 2 290 415 3 133 1.20e-57 189
MS.gene42840.t1 MTR_7g006540 26.596 564 378 12 14 548 56 612 1.52e-57 203
MS.gene42840.t1 MTR_8g087810 27.116 579 382 12 1 548 6 575 3.24e-56 198
MS.gene42840.t1 MTR_7g051830 24.731 558 363 13 2 545 11 525 1.06e-49 179
MS.gene42840.t1 MTR_4g024930 24.779 565 339 12 21 546 36 553 1.40e-49 180
MS.gene42840.t1 MTR_7g052600 25.224 559 359 16 2 545 11 525 6.06e-49 177
MS.gene42840.t1 MTR_6g008690 25.271 554 336 13 34 546 19 535 1.20e-48 177
MS.gene42840.t1 MTR_7g098210 26.515 528 277 12 44 549 5 443 6.26e-48 173
MS.gene42840.t1 MTR_7g051880 24.014 558 367 14 2 545 11 525 2.31e-47 173
MS.gene42840.t1 MTR_1g009170 29.250 400 212 11 149 528 9 357 4.38e-39 147
MS.gene42840.t1 MTR_4g033310 28.391 317 193 9 249 549 190 488 4.56e-31 126
MS.gene42840.t1 MTR_4g033310 34.536 194 105 5 1 189 16 192 1.43e-17 86.3
MS.gene42840.t1 MTR_8g091275 58.333 72 29 1 197 267 1 72 5.00e-24 96.7
MS.gene42840.t1 MTR_8g091480 59.420 69 22 2 221 289 27 89 7.05e-16 81.3
MS.gene42840.t1 MTR_3g065350 32.051 156 96 5 331 480 1 152 2.85e-11 62.4
MS.gene42840.t1 MTR_7g064160 31.915 94 63 1 15 107 23 116 7.35e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42840.t1 AT3G45660 49.910 557 259 4 1 550 22 565 0.0 560
MS.gene42840.t1 AT3G45660 49.910 557 259 4 1 550 1 544 0.0 560
MS.gene42840.t1 AT3G45660 49.910 557 259 4 1 550 1 544 0.0 560
MS.gene42840.t1 AT3G45650 49.462 558 261 5 1 550 1 545 0.0 555
MS.gene42840.t1 AT3G45680 49.270 548 273 3 3 550 2 544 0.0 541
MS.gene42840.t1 AT3G45650 47.260 584 261 6 1 550 1 571 0.0 540
MS.gene42840.t1 AT3G45710 47.905 549 276 3 2 550 8 546 0.0 540
MS.gene42840.t1 AT3G45700 46.875 544 278 4 7 550 2 534 1.48e-180 520
MS.gene42840.t1 AT3G45720 46.364 550 287 4 1 550 1 542 9.71e-177 510
MS.gene42840.t1 AT3G45690 45.055 546 242 7 11 550 8 501 2.77e-161 469
MS.gene42840.t1 AT1G69870 35.273 550 330 10 20 548 50 594 1.20e-109 340
MS.gene42840.t1 AT1G18880 35.428 573 321 10 11 550 12 568 6.22e-107 332
MS.gene42840.t1 AT3G47960 35.315 555 319 10 24 548 64 608 3.64e-103 324
MS.gene42840.t1 AT5G62680 33.627 568 337 10 13 548 33 592 1.70e-99 314
MS.gene42840.t1 AT1G27080 32.965 543 343 8 20 548 13 548 1.51e-98 310
MS.gene42840.t1 AT3G16180 34.043 564 339 12 8 545 9 565 5.25e-96 304
MS.gene42840.t1 AT1G52190 33.099 568 343 13 8 545 6 566 8.75e-96 304
MS.gene42840.t1 AT2G26690 33.574 554 336 11 10 546 18 556 8.11e-94 298
MS.gene42840.t1 AT1G68570 33.275 574 355 10 1 550 1 570 5.45e-93 296
MS.gene42840.t1 AT1G62200 34.066 546 321 12 20 541 51 581 6.71e-93 296
MS.gene42840.t1 AT1G27080 32.943 513 323 8 50 548 1 506 1.87e-92 293
MS.gene42840.t1 AT3G54140 31.034 551 354 9 17 548 20 563 5.23e-92 293
MS.gene42840.t1 AT3G54140 31.034 551 354 9 17 548 20 563 5.23e-92 293
MS.gene42840.t1 AT1G62200 33.216 569 324 13 20 541 51 610 3.75e-90 290
MS.gene42840.t1 AT1G62200 33.216 569 324 13 20 541 65 624 6.12e-90 290
MS.gene42840.t1 AT2G26690 33.779 524 320 10 40 546 10 523 6.18e-90 287
MS.gene42840.t1 AT3G54450 29.485 563 346 8 15 550 6 544 7.99e-90 287
MS.gene42840.t1 AT2G26690 33.846 520 317 10 44 546 2 511 1.66e-89 285
MS.gene42840.t1 AT1G68570 33.895 534 327 9 39 550 11 540 1.61e-88 284
MS.gene42840.t1 AT5G01180 30.741 553 356 9 17 550 21 565 1.92e-87 281
MS.gene42840.t1 AT5G01180 30.741 553 356 9 17 550 21 565 1.92e-87 281
MS.gene42840.t1 AT5G01180 30.741 553 356 9 17 550 21 565 1.92e-87 281
MS.gene42840.t1 AT1G69860 31.560 564 357 11 1 549 1 550 3.56e-83 270
MS.gene42840.t1 AT5G46040 31.115 556 327 12 9 529 11 545 1.85e-82 268
MS.gene42840.t1 AT5G28470 30.474 548 357 11 20 549 16 557 1.94e-82 268
MS.gene42840.t1 AT5G28470 30.220 546 359 10 20 549 16 555 1.08e-81 266
MS.gene42840.t1 AT3G53960 30.319 564 366 11 5 550 21 575 8.13e-81 265
MS.gene42840.t1 AT2G02020 30.199 553 316 10 20 550 41 545 4.92e-79 258
MS.gene42840.t1 AT2G37900 31.059 557 353 12 13 550 24 568 6.06e-79 259
MS.gene42840.t1 AT2G02040 30.505 554 350 12 20 549 40 582 1.09e-78 258
MS.gene42840.t1 AT2G40460 31.541 558 328 13 21 549 24 556 1.81e-78 258
MS.gene42840.t1 AT3G21670 31.009 545 344 13 21 548 29 558 7.20e-78 256
MS.gene42840.t1 AT1G32450 31.015 532 339 12 39 546 55 582 9.74e-75 249
MS.gene42840.t1 AT2G37900 30.754 491 315 9 73 550 11 489 4.42e-73 241
MS.gene42840.t1 AT5G46050 28.755 546 348 13 2 524 13 540 2.72e-72 241
MS.gene42840.t1 AT5G19640 28.598 535 360 9 22 546 60 582 6.14e-72 241
MS.gene42840.t1 AT1G72125 30.961 562 326 14 18 550 30 558 1.96e-71 239
MS.gene42840.t1 AT1G27040 28.596 570 370 11 1 547 1 556 6.22e-71 238
MS.gene42840.t1 AT4G21680 28.962 549 360 10 23 547 30 572 6.61e-71 238
MS.gene42840.t1 AT1G33440 29.630 540 355 8 21 545 38 567 8.72e-71 238
MS.gene42840.t1 AT1G27040 28.920 574 363 13 1 547 5 560 9.11e-71 237
MS.gene42840.t1 AT1G12110 30.018 563 358 10 10 549 21 570 2.19e-70 237
MS.gene42840.t1 AT1G27040 29.333 525 330 11 47 547 21 528 8.50e-70 234
MS.gene42840.t1 AT1G69850 30.106 568 348 16 21 550 25 581 1.63e-67 229
MS.gene42840.t1 AT1G59740 28.807 545 359 8 17 542 37 571 5.06e-67 228
MS.gene42840.t1 AT1G72140 28.136 558 330 11 23 549 36 553 1.59e-66 226
MS.gene42840.t1 AT1G22540 31.079 547 324 11 23 545 32 549 2.26e-66 225
MS.gene42840.t1 AT1G22550 29.295 553 343 10 23 550 32 561 6.42e-65 221
MS.gene42840.t1 AT1G22570 29.887 532 320 12 23 526 32 538 3.48e-64 219
MS.gene42840.t1 AT1G72120 30.325 554 330 11 23 550 31 554 5.08e-63 216
MS.gene42840.t1 AT1G72130 29.151 542 331 9 23 547 27 532 8.31e-63 215
MS.gene42840.t1 AT5G46050 29.452 438 277 9 108 524 2 428 2.73e-62 212
MS.gene42840.t1 AT1G22570 29.446 523 316 13 32 526 4 501 4.02e-61 211
MS.gene42840.t1 AT2G02020 29.326 549 305 14 20 550 41 524 7.08e-61 210
MS.gene42840.t1 AT3G25260 28.571 504 318 7 48 545 48 515 8.93e-61 209
MS.gene42840.t1 AT5G13400 26.018 565 382 12 14 550 57 613 2.75e-56 199
MS.gene42840.t1 AT5G62730 26.182 550 352 14 27 549 5 527 2.84e-55 195
MS.gene42840.t1 AT5G62730 26.165 558 356 14 21 549 56 586 2.98e-55 196
MS.gene42840.t1 AT5G14940 26.353 573 346 13 16 546 1 539 1.22e-54 194
MS.gene42840.t1 AT5G11570 26.958 549 310 13 13 545 3 476 1.32e-53 189
MS.gene42840.t1 AT1G72130 29.398 432 263 8 133 547 8 414 2.82e-53 187
MS.gene42840.t1 AT1G72130 29.398 432 263 8 133 547 8 414 2.82e-53 187
MS.gene42840.t1 AT3G25280 26.145 524 337 12 34 545 36 521 3.61e-48 175
MS.gene42840.t1 AT3G01350 25.709 564 335 13 34 546 19 549 1.39e-45 169
MS.gene42840.t1 AT2G38100 25.427 527 327 13 49 549 2 488 1.04e-34 137
MS.gene42840.t1 AT2G38100 25.427 527 327 13 49 549 24 510 2.31e-34 136
MS.gene42840.t1 AT2G38100 25.427 527 327 13 49 549 18 504 2.48e-34 136

Find 113 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTACATCGAAGATAATT+TGG 0.115376 2.3:+8064686 MS.gene42840:CDS
GCTGCATGGATGAGGCTTTA+AGG 0.172746 2.3:-8064448 None:intergenic
GCCACATGGAAGTGCGATTT+TGG 0.172832 2.3:+8064800 MS.gene42840:CDS
ATCGTTGCTGATTCTTTCTT+TGG 0.187254 2.3:+8063996 MS.gene42840:CDS
GCAGCGGTTTCAATGCTTAT+AGG 0.248050 2.3:+8065897 MS.gene42840:CDS
TTCACTTTCTATGTTGCTTC+AGG 0.254353 2.3:+8064645 MS.gene42840:CDS
CCAGGTTGGCATAAGGTTAC+TGG 0.278137 2.3:+8065630 MS.gene42840:CDS
GATAATTTGGGTTGGGCTAT+AGG 0.307130 2.3:+8064699 MS.gene42840:CDS
GTCAAGAAAAGTGAGGAAAA+TGG 0.307219 2.3:-8065595 None:intergenic
AAGTCCATTTGCATTACTAT+TGG 0.312103 2.3:-8065477 None:intergenic
GATTACTACGGTAGTTCTTC+TGG 0.315848 2.3:+8064888 MS.gene42840:CDS
TTGGGTTGGGCTATAGGATT+TGG 0.320970 2.3:+8064705 MS.gene42840:CDS
CAATTAGTGTTGGTTGGTAT+TGG 0.327167 2.3:+8065798 MS.gene42840:CDS
TGTGGCTGCCTTTGTTGGTT+TGG 0.335104 2.3:+8064737 MS.gene42840:CDS
GTCCTAATATCAATTGGATT+TGG 0.339605 2.3:+8064537 MS.gene42840:CDS
ATCTTCGATGTAAATAATTC+CGG 0.340345 2.3:-8064679 None:intergenic
ATAAGTTTCCCCTTCTTCAT+TGG 0.341967 2.3:+8063686 MS.gene42840:CDS
CACCAAATCCAATTGATATT+AGG 0.345339 2.3:-8064539 None:intergenic
CAGCGGTTTCAATGCTTATA+GGG 0.345560 2.3:+8065898 MS.gene42840:CDS
CCTAAGCTGCTCCAACAAAT+AGG 0.348313 2.3:+8065660 MS.gene42840:CDS
CAATACCGGGAAAAGGATTA+AGG 0.369625 2.3:+8064943 MS.gene42840:CDS
GCATTACTATTGGAATTGAT+AGG 0.375721 2.3:-8065467 None:intergenic
CTTTAATTGACCAAGTTCAT+AGG 0.376672 2.3:+8065943 MS.gene42840:CDS
ATTTACATCGAAGATAATTT+GGG 0.382217 2.3:+8064687 MS.gene42840:CDS
ATGTTTCAATGTCTGTGTTA+TGG 0.382577 2.3:+8065766 MS.gene42840:CDS
TTAGTGATGGATCGTTCATT+AGG 0.387822 2.3:+8065516 MS.gene42840:CDS
TGTGCTGTGGCTGCCTTTGT+TGG 0.388715 2.3:+8064732 MS.gene42840:CDS
GCAACGATTGCGGCCACTAC+TGG 0.405757 2.3:-8063981 None:intergenic
CATCGAAGATAATTTGGGTT+GGG 0.406002 2.3:+8064692 MS.gene42840:CDS
CACAATTCTATTATTCTTGA+CGG 0.406311 2.3:+8064413 MS.gene42840:CDS
TACTGGATGTTAGTCGTACT+CGG 0.406589 2.3:+8066017 MS.gene42840:CDS
TTCCCGTGATTTATGTCATC+AGG 0.412476 2.3:-8065981 None:intergenic
TAATTGGAATATTACCACTA+TGG 0.412509 2.3:+8065430 MS.gene42840:CDS
AGCATAGTCCTAATATCAAT+TGG 0.412840 2.3:+8064531 MS.gene42840:CDS
GCTTCAGGAGCTGCATTAAC+CGG 0.417423 2.3:+8064660 MS.gene42840:CDS
CATGTCCTACTCCTATTTGT+TGG 0.420471 2.3:-8065671 None:intergenic
CCTATTTGTTGGAGCAGCTT+AGG 0.424589 2.3:-8065660 None:intergenic
TGTTGGTGGTTTGCATGTGA+TGG 0.432040 2.3:-8064481 None:intergenic
AGTGCTGCCTCCACCAATAC+CGG 0.443723 2.3:+8064929 MS.gene42840:CDS
CTAATATCAATTGGATTTGG+TGG 0.450715 2.3:+8064540 MS.gene42840:CDS
TCAAGAAAAGTGAGGAAAAT+GGG 0.451760 2.3:-8065594 None:intergenic
CAAATTTATAATGTTGTCGT+TGG 0.452697 2.3:+8063942 MS.gene42840:CDS
TAATAGAATGTAACTTGTCC+TGG 0.454723 2.3:-8065837 None:intergenic
ACTGTGTATTGGATTCTTGT+TGG 0.456215 2.3:-8064498 None:intergenic
AATTCCAATAGTAATGCAAA+TGG 0.460508 2.3:+8065473 MS.gene42840:CDS
ACTTGCAAGCAATGGAATAG+TGG 0.463177 2.3:+8063863 MS.gene42840:CDS
GGCCACTACTGGAAATATAC+TGG 0.468506 2.3:-8063970 None:intergenic
GGACATGTGCTGAATGTTCT+TGG 0.468739 2.3:+8065687 MS.gene42840:CDS
CTTGACAGGATGCTATTGCC+AGG 0.474278 2.3:+8065612 MS.gene42840:CDS
CCAGTAACCTTATGCCAACC+TGG 0.475202 2.3:-8065630 None:intergenic
TTGTTGCATCTGCTCGTAAG+TGG 0.481137 2.3:+8064838 MS.gene42840:CDS
TTTCCACAATTAGTGTTGGT+TGG 0.482453 2.3:+8065792 MS.gene42840:CDS
AGAGAGAGACCAATGAAGAA+GGG 0.482917 2.3:-8063695 None:intergenic
GCTATTGCCAGGTTGGCATA+AGG 0.485413 2.3:+8065623 MS.gene42840:CDS
AAGAGAGAGACCAATGAAGA+AGG 0.489487 2.3:-8063696 None:intergenic
ATGGAAGAAAGCGCGGCGGT+TGG 0.496987 2.3:+8063663 MS.gene42840:CDS
CCTCCACCAATACCGGGAAA+AGG 0.507919 2.3:+8064936 MS.gene42840:CDS
GTGTATTGGATTCTTGTTGG+TGG 0.509836 2.3:-8064495 None:intergenic
GTGTGCAACAATGGATGGTC+AGG 0.509946 2.3:+8063601 None:intergenic
TTATGTATAGAACTGTGTAT+TGG 0.516541 2.3:-8064509 None:intergenic
ACATCGAAGATAATTTGGGT+TGG 0.520616 2.3:+8064691 MS.gene42840:CDS
CGTTTCACAGCAGCATCACT+AGG 0.522507 2.3:+8064567 MS.gene42840:CDS
TATACTTCAAGCTTTAGTGA+TGG 0.526822 2.3:+8065503 MS.gene42840:CDS
GCAGATGAGAGCTTGAGTAA+TGG 0.528220 2.3:+8063644 MS.gene42840:CDS
ACAGGATGCTATTGCCAGGT+TGG 0.530502 2.3:+8065616 MS.gene42840:CDS
GTTGTTTCCACAATTAGTGT+TGG 0.534629 2.3:+8065788 MS.gene42840:CDS
ATACCAACCAACACTAATTG+TGG 0.537554 2.3:-8065795 None:intergenic
TTAACTATAGGTATGATAGC+GGG 0.538516 2.3:+8063834 MS.gene42840:intron
AATCAGTACTCCTATGAACT+TGG 0.539124 2.3:-8065953 None:intergenic
CTTGCAAGCAATGGAATAGT+GGG 0.541989 2.3:+8063864 MS.gene42840:CDS
GAGAGAGACCAATGAAGAAG+GGG 0.547308 2.3:-8063694 None:intergenic
GGAAGATCGACAATGTGTAC+TGG 0.551643 2.3:+8066000 MS.gene42840:CDS
CACCAGTATATTTCCAGTAG+TGG 0.555389 2.3:+8063968 MS.gene42840:CDS
ACTGGATGTTAGTCGTACTC+GGG 0.556684 2.3:+8066018 MS.gene42840:CDS
GAACCATTGCTGCATGGATG+AGG 0.561384 2.3:-8064456 None:intergenic
ATAACAGAAATAGAACCAGC+TGG 0.562257 2.3:-8065555 None:intergenic
GGGATGTCACTTGCAAGCAA+TGG 0.563554 2.3:+8063855 MS.gene42840:CDS
CTACCTGATGACATAAATCA+CGG 0.570213 2.3:+8065978 MS.gene42840:CDS
ATTAACTATAGGTATGATAG+CGG 0.570505 2.3:+8063833 MS.gene42840:intron
ACCGTAGTAATCCTCTACTC+TGG 0.578927 2.3:-8064877 None:intergenic
GTGCTGCCTCCACCAATACC+GGG 0.579164 2.3:+8064930 MS.gene42840:CDS
TAAAATACAAGAAGAAGCAA+AGG 0.580215 2.3:-8064033 None:intergenic
CTGGATGTTAGTCGTACTCG+GGG 0.588713 2.3:+8066019 MS.gene42840:CDS
CTGCTCCAACAAATAGGAGT+AGG 0.598863 2.3:+8065666 MS.gene42840:CDS
TGTGCTGAATGTTCTTGGCA+TGG 0.599136 2.3:+8065692 MS.gene42840:CDS
AAGCCTCATCCATGCAGCAA+TGG 0.601337 2.3:+8064453 MS.gene42840:CDS
GCTGAATGTTCTTGGCATGG+TGG 0.607060 2.3:+8065695 MS.gene42840:CDS
ACTATGCACAATTCAACAAG+TGG 0.607651 2.3:+8065392 MS.gene42840:CDS
GAAAGAATCAGCAACGATTG+CGG 0.609321 2.3:-8063991 None:intergenic
TAACTATAGGTATGATAGCG+GGG 0.610759 2.3:+8063835 MS.gene42840:intron
TGAATTGTGCATAGTCTCCA+TGG 0.612472 2.3:-8065384 None:intergenic
TAAGCTCTCTTCCAGAGTAG+AGG 0.612591 2.3:+8064866 MS.gene42840:CDS
AAGTTCATAGGAGTACTGAT+TGG 0.614089 2.3:+8065955 MS.gene42840:CDS
TTTGACAAACCAGAACATCA+AGG 0.615786 2.3:+8064600 MS.gene42840:CDS
AATAGACTTGAAGTCCATAG+TGG 0.622304 2.3:-8065444 None:intergenic
TAACAGAAATAGAACCAGCT+GGG 0.623287 2.3:-8065554 None:intergenic
AGGATTTGGTATCTGTGCTG+TGG 0.626074 2.3:+8064719 MS.gene42840:CDS
TACCTGATGACATAAATCAC+GGG 0.627724 2.3:+8065979 MS.gene42840:CDS
TCCAGAGTAGAGGATTACTA+CGG 0.636666 2.3:+8064876 MS.gene42840:CDS
TCCAAAATCGCACTTCCATG+TGG 0.636823 2.3:-8064801 None:intergenic
GATGTGCTCTTTAGTGATTG+TGG 0.636964 2.3:-8065870 None:intergenic
GATGCAGATCTACACTCAGA+TGG 0.639318 2.3:+8065345 MS.gene42840:CDS
ATGGATGAACCATTGCTGCA+TGG 0.645148 2.3:-8064462 None:intergenic
GTGAAGTGTGCAACAATGGA+TGG 0.650336 2.3:+8063596 None:intergenic
CATCACTTATTAGAGCTGCA+CGG 0.652379 2.3:-8065326 None:intergenic
TATCGGGCTGAAAAGCCACA+TGG 0.653365 2.3:+8064786 MS.gene42840:CDS
TTGCATCTGCTCGTAAGTGG+AGG 0.661442 2.3:+8064841 MS.gene42840:CDS
TTGAGTAATGGAAGAAAGCG+CGG 0.673268 2.3:+8063656 MS.gene42840:CDS
AAAGAGCACATCAACTGCAG+CGG 0.686439 2.3:+8065881 MS.gene42840:CDS
GCATCCTGTCAAGAAAAGTG+AGG 0.686991 2.3:-8065602 None:intergenic
GCACAATTAAGAAATCACCA+TGG 0.695213 2.3:+8065367 MS.gene42840:CDS
TGGATGTTAGTCGTACTCGG+GGG 0.758348 2.3:+8066020 MS.gene42840:CDS
AGTAATGGAAGAAAGCGCGG+CGG 0.807785 2.3:+8063659 MS.gene42840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATTTACATCTAATA+TGG + chr2.3:8064149-8064168 MS.gene42840:intron 10.0%
!! GAAGATTTCAAAAAAATAAT+TGG + chr2.3:8065414-8065433 MS.gene42840:CDS 15.0%
!! AGCATATATGCAATATAATT+TGG - chr2.3:8064084-8064103 None:intergenic 20.0%
!! ATATTGTAAAATAGGACATT+TGG - chr2.3:8064315-8064334 None:intergenic 20.0%
!! ATTTACATCGAAGATAATTT+GGG + chr2.3:8064687-8064706 MS.gene42840:CDS 20.0%
!! TATTTACATCGAAGATAATT+TGG + chr2.3:8064686-8064705 MS.gene42840:CDS 20.0%
!! TGATGAGTTAAAAAATGAAA+GGG - chr2.3:8063725-8063744 None:intergenic 20.0%
!! TTGATGAGTTAAAAAATGAA+AGG - chr2.3:8063726-8063745 None:intergenic 20.0%
!!! TTATACTGTTGATTAACTAT+AGG + chr2.3:8063822-8063841 MS.gene42840:intron 20.0%
!!! TTTGTTTACTTTTTTCAAGT+TGG + chr2.3:8064257-8064276 MS.gene42840:intron 20.0%
! AAAAATATTCCTTGATGTTC+TGG - chr2.3:8064612-8064631 None:intergenic 25.0%
! AATAAGATTATCTGCATTCA+AGG - chr2.3:8065024-8065043 None:intergenic 25.0%
! AATTCCAATAGTAATGCAAA+TGG + chr2.3:8065473-8065492 MS.gene42840:CDS 25.0%
! ATCTTCGATGTAAATAATTC+CGG - chr2.3:8064682-8064701 None:intergenic 25.0%
! ATTAACTATAGGTATGATAG+CGG + chr2.3:8063833-8063852 MS.gene42840:intron 25.0%
! ATTCTCATAGTTCAAATGTA+GGG + chr2.3:8064987-8065006 MS.gene42840:intron 25.0%
! CAAATTTATAATGTTGTCGT+TGG + chr2.3:8063942-8063961 MS.gene42840:CDS 25.0%
! CACAATTCTATTATTCTTGA+CGG + chr2.3:8064413-8064432 MS.gene42840:CDS 25.0%
! CTAAAAAAAGAACGTAATAG+AGG - chr2.3:8064208-8064227 None:intergenic 25.0%
! TAAAATACAAGAAGAAGCAA+AGG - chr2.3:8064036-8064055 None:intergenic 25.0%
! TAATTGGAATATTACCACTA+TGG + chr2.3:8065430-8065449 MS.gene42840:CDS 25.0%
! TATTCTCATAGTTCAAATGT+AGG + chr2.3:8064986-8065005 MS.gene42840:intron 25.0%
! TGCACATCATATTGTAAAAT+AGG - chr2.3:8064323-8064342 None:intergenic 25.0%
! TTATGTATAGAACTGTGTAT+TGG - chr2.3:8064512-8064531 None:intergenic 25.0%
!! TTCTTCTTGTATTTTATTGC+TGG + chr2.3:8064040-8064059 MS.gene42840:CDS 25.0%
!!! ATCAAGGAATATTTTTCAAC+TGG + chr2.3:8064616-8064635 MS.gene42840:CDS 25.0%
!!! TTACGTTCTTTTTTTAGAAG+TGG + chr2.3:8064211-8064230 MS.gene42840:intron 25.0%
AAAAACAACCAAACCAACAA+AGG - chr2.3:8064748-8064767 None:intergenic 30.0%
AAATATGTGATGACTGATGA+TGG - chr2.3:8064185-8064204 None:intergenic 30.0%
AAATGATAGCTGACAGTTTA+GGG + chr2.3:8065075-8065094 MS.gene42840:intron 30.0%
AAGTCCATTTGCATTACTAT+TGG - chr2.3:8065480-8065499 None:intergenic 30.0%
AATAGACATCCTAACAATGT+TGG - chr2.3:8065103-8065122 None:intergenic 30.0%
ACCAAACATACACTTATTTG+TGG + chr2.3:8064351-8064370 MS.gene42840:intron 30.0%
ACCACAAATAAGTGTATGTT+TGG - chr2.3:8064355-8064374 None:intergenic 30.0%
AGCATAGTCCTAATATCAAT+TGG + chr2.3:8064531-8064550 MS.gene42840:CDS 30.0%
ATGTTTCAATGTCTGTGTTA+TGG + chr2.3:8065766-8065785 MS.gene42840:CDS 30.0%
CACCAAATCCAATTGATATT+AGG - chr2.3:8064542-8064561 None:intergenic 30.0%
CTAATATCAATTGGATTTGG+TGG + chr2.3:8064540-8064559 MS.gene42840:CDS 30.0%
CTTTAATTGACCAAGTTCAT+AGG + chr2.3:8065943-8065962 MS.gene42840:CDS 30.0%
GCATTACTATTGGAATTGAT+AGG - chr2.3:8065470-8065489 None:intergenic 30.0%
GTCCTAATATCAATTGGATT+TGG + chr2.3:8064537-8064556 MS.gene42840:CDS 30.0%
TCAAGAAAAGTGAGGAAAAT+GGG - chr2.3:8065597-8065616 None:intergenic 30.0%
TTAACTATAGGTATGATAGC+GGG + chr2.3:8063834-8063853 MS.gene42840:intron 30.0%
TTCTCATAGTTCAAATGTAG+GGG + chr2.3:8064988-8065007 MS.gene42840:intron 30.0%
TTGAACTATGAGAATAAGTG+TGG - chr2.3:8064982-8065001 None:intergenic 30.0%
! TAATAGAATGTAACTTGTCC+TGG - chr2.3:8065840-8065859 None:intergenic 30.0%
! TATACTTCAAGCTTTAGTGA+TGG + chr2.3:8065503-8065522 MS.gene42840:CDS 30.0%
!!! TGTTGGGTTATCGATTTTAT+CGG + chr2.3:8064769-8064788 MS.gene42840:CDS 30.0%
AATAGACTTGAAGTCCATAG+TGG - chr2.3:8065447-8065466 None:intergenic 35.0%
AATCAGTACTCCTATGAACT+TGG - chr2.3:8065956-8065975 None:intergenic 35.0%
AATGATAGCTGACAGTTTAG+GGG + chr2.3:8065076-8065095 MS.gene42840:intron 35.0%
ACATCGAAGATAATTTGGGT+TGG + chr2.3:8064691-8064710 MS.gene42840:CDS 35.0%
ACTATGCACAATTCAACAAG+TGG + chr2.3:8065392-8065411 MS.gene42840:CDS 35.0%
ACTGTGTATTGGATTCTTGT+TGG - chr2.3:8064501-8064520 None:intergenic 35.0%
ATAACAGAAATAGAACCAGC+TGG - chr2.3:8065558-8065577 None:intergenic 35.0%
ATAAGTTTCCCCTTCTTCAT+TGG + chr2.3:8063686-8063705 MS.gene42840:CDS 35.0%
ATACCAACCAACACTAATTG+TGG - chr2.3:8065798-8065817 None:intergenic 35.0%
CAAATGATAGCTGACAGTTT+AGG + chr2.3:8065074-8065093 MS.gene42840:intron 35.0%
CTACCTGATGACATAAATCA+CGG + chr2.3:8065978-8065997 MS.gene42840:CDS 35.0%
GCACAATTAAGAAATCACCA+TGG + chr2.3:8065367-8065386 MS.gene42840:CDS 35.0%
GTCAAGAAAAGTGAGGAAAA+TGG - chr2.3:8065598-8065617 None:intergenic 35.0%
TAACAGAAATAGAACCAGCT+GGG - chr2.3:8065557-8065576 None:intergenic 35.0%
TACCTGATGACATAAATCAC+GGG + chr2.3:8065979-8065998 MS.gene42840:CDS 35.0%
TTTGACAAACCAGAACATCA+AGG + chr2.3:8064600-8064619 MS.gene42840:CDS 35.0%
! CATCGAAGATAATTTGGGTT+GGG + chr2.3:8064692-8064711 MS.gene42840:CDS 35.0%
! GTTGTTTCCACAATTAGTGT+TGG + chr2.3:8065788-8065807 MS.gene42840:CDS 35.0%
! TAACTATAGGTATGATAGCG+GGG + chr2.3:8063835-8063854 MS.gene42840:intron 35.0%
! TAGTACCTTAATCCTTTTCC+CGG - chr2.3:8064951-8064970 None:intergenic 35.0%
! TTCACTTTCTATGTTGCTTC+AGG + chr2.3:8064645-8064664 MS.gene42840:CDS 35.0%
!! AACCAGCTGGGATTTTAAAA+TGG - chr2.3:8065545-8065564 None:intergenic 35.0%
!! AAGTTCATAGGAGTACTGAT+TGG + chr2.3:8065955-8065974 MS.gene42840:CDS 35.0%
!! ATCGTTGCTGATTCTTTCTT+TGG + chr2.3:8063996-8064015 MS.gene42840:CDS 35.0%
!! CAATTAGTGTTGGTTGGTAT+TGG + chr2.3:8065798-8065817 MS.gene42840:CDS 35.0%
!! TTAGTGATGGATCGTTCATT+AGG + chr2.3:8065516-8065535 MS.gene42840:CDS 35.0%
!! TTTCCACAATTAGTGTTGGT+TGG + chr2.3:8065792-8065811 MS.gene42840:CDS 35.0%
!! TTTTCCTCACTTTTCTTGAC+AGG + chr2.3:8065598-8065617 MS.gene42840:CDS 35.0%
!!! ACCAGCTGGGATTTTAAAAT+GGG - chr2.3:8065544-8065563 None:intergenic 35.0%
!!! GGTTTGGTTGTTTTTGTGTT+GGG + chr2.3:8064753-8064772 MS.gene42840:CDS 35.0%
!!! GTTGGGTTATCGATTTTATC+GGG + chr2.3:8064770-8064789 MS.gene42840:CDS 35.0%
!!! TGGTTTGGTTGTTTTTGTGT+TGG + chr2.3:8064752-8064771 MS.gene42840:CDS 35.0%
AAGAGAGAGACCAATGAAGA+AGG - chr2.3:8063699-8063718 None:intergenic 40.0%
ACGGTTGAAAAACCTGCATT+TGG - chr2.3:8065310-8065329 None:intergenic 40.0%
ACTTGCAAGCAATGGAATAG+TGG + chr2.3:8063863-8063882 MS.gene42840:CDS 40.0%
AGAGAGAGACCAATGAAGAA+GGG - chr2.3:8063698-8063717 None:intergenic 40.0%
CAATACCGGGAAAAGGATTA+AGG + chr2.3:8064943-8064962 MS.gene42840:CDS 40.0%
CACCAGTATATTTCCAGTAG+TGG + chr2.3:8063968-8063987 MS.gene42840:CDS 40.0%
CAGCGGTTTCAATGCTTATA+GGG + chr2.3:8065898-8065917 MS.gene42840:CDS 40.0%
CATCACTTATTAGAGCTGCA+CGG - chr2.3:8065329-8065348 None:intergenic 40.0%
CATGTCCTACTCCTATTTGT+TGG - chr2.3:8065674-8065693 None:intergenic 40.0%
CTTGCAAGCAATGGAATAGT+GGG + chr2.3:8063864-8063883 MS.gene42840:CDS 40.0%
GAAAGAATCAGCAACGATTG+CGG - chr2.3:8063994-8064013 None:intergenic 40.0%
GATGTGCTCTTTAGTGATTG+TGG - chr2.3:8065873-8065892 None:intergenic 40.0%
GATTACTACGGTAGTTCTTC+TGG + chr2.3:8064888-8064907 MS.gene42840:CDS 40.0%
GCTGATCTATATCCAAATGC+AGG + chr2.3:8065295-8065314 MS.gene42840:intron 40.0%
GTGTATTGGATTCTTGTTGG+TGG - chr2.3:8064498-8064517 None:intergenic 40.0%
TACTGGATGTTAGTCGTACT+CGG + chr2.3:8066017-8066036 MS.gene42840:CDS 40.0%
TCCAGAGTAGAGGATTACTA+CGG + chr2.3:8064876-8064895 MS.gene42840:CDS 40.0%
TGAATTGTGCATAGTCTCCA+TGG - chr2.3:8065387-8065406 None:intergenic 40.0%
TTCCCGTGATTTATGTCATC+AGG - chr2.3:8065984-8066003 None:intergenic 40.0%
TTTAGGGGTCCAACATTGTT+AGG + chr2.3:8065091-8065110 MS.gene42840:intron 40.0%
! CTTAATCCTTTTCCCGGTAT+TGG - chr2.3:8064945-8064964 None:intergenic 40.0%
! GGAGAAGCTTTTCATTTTCC+AGG + chr2.3:8065819-8065838 MS.gene42840:CDS 40.0%
! TTGAGTAATGGAAGAAAGCG+CGG + chr2.3:8063656-8063675 MS.gene42840:CDS 40.0%
!! GATAATTTGGGTTGGGCTAT+AGG + chr2.3:8064699-8064718 MS.gene42840:CDS 40.0%
!! GGAAGTGCGATTTTGGATTT+GGG + chr2.3:8064807-8064826 MS.gene42840:CDS 40.0%
!! TGGAAGTGCGATTTTGGATT+TGG + chr2.3:8064806-8064825 MS.gene42840:CDS 40.0%
!!! TCCCATTTTAAAATCCCAGC+TGG + chr2.3:8065540-8065559 MS.gene42840:CDS 40.0%
AAATAGGACATTTGGCACGC+TGG - chr2.3:8064307-8064326 None:intergenic 45.0%
AATAGGACATTTGGCACGCT+GGG - chr2.3:8064306-8064325 None:intergenic 45.0%
ACCGTAGTAATCCTCTACTC+TGG - chr2.3:8064880-8064899 None:intergenic 45.0%
ACTGGATGTTAGTCGTACTC+GGG + chr2.3:8066018-8066037 MS.gene42840:CDS 45.0%
ACTTTCACCTTTGCACTTGC+AGG + chr2.3:8064389-8064408 MS.gene42840:intron 45.0%
ATGGATGAACCATTGCTGCA+TGG - chr2.3:8064465-8064484 None:intergenic 45.0%
CCTAAGCTGCTCCAACAAAT+AGG + chr2.3:8065660-8065679 MS.gene42840:CDS 45.0%
CTGCTCCAACAAATAGGAGT+AGG + chr2.3:8065666-8065685 MS.gene42840:CDS 45.0%
CTTTCACCTTTGCACTTGCA+GGG + chr2.3:8064390-8064409 MS.gene42840:intron 45.0%
GAGAGAGACCAATGAAGAAG+GGG - chr2.3:8063697-8063716 None:intergenic 45.0%
GATGCAGATCTACACTCAGA+TGG + chr2.3:8065345-8065364 MS.gene42840:CDS 45.0%
GCAGATGAGAGCTTGAGTAA+TGG + chr2.3:8063644-8063663 MS.gene42840:CDS 45.0%
GCAGCGGTTTCAATGCTTAT+AGG + chr2.3:8065897-8065916 MS.gene42840:CDS 45.0%
GCATCCTGTCAAGAAAAGTG+AGG - chr2.3:8065605-8065624 None:intergenic 45.0%
GGAAGATCGACAATGTGTAC+TGG + chr2.3:8066000-8066019 MS.gene42840:CDS 45.0%
GGACATGTGCTGAATGTTCT+TGG + chr2.3:8065687-8065706 MS.gene42840:CDS 45.0%
GGCCACTACTGGAAATATAC+TGG - chr2.3:8063973-8063992 None:intergenic 45.0%
TAAGCTCTCTTCCAGAGTAG+AGG + chr2.3:8064866-8064885 MS.gene42840:CDS 45.0%
TCCAAAATCGCACTTCCATG+TGG - chr2.3:8064804-8064823 None:intergenic 45.0%
TGTGCTGAATGTTCTTGGCA+TGG + chr2.3:8065692-8065711 MS.gene42840:CDS 45.0%
TTGTTGCATCTGCTCGTAAG+TGG + chr2.3:8064838-8064857 MS.gene42840:CDS 45.0%
! AAAGAGCACATCAACTGCAG+CGG + chr2.3:8065881-8065900 MS.gene42840:CDS 45.0%
! AGGATTTGGTATCTGTGCTG+TGG + chr2.3:8064719-8064738 MS.gene42840:CDS 45.0%
! CCTATTTGTTGGAGCAGCTT+AGG - chr2.3:8065663-8065682 None:intergenic 45.0%
! GCTCTCATCTGCTTCTTTTG+AGG - chr2.3:8063636-8063655 None:intergenic 45.0%
!! AATCCTTTTCCCGGTATTGG+TGG - chr2.3:8064942-8064961 None:intergenic 45.0%
!! TGTTGGTGGTTTGCATGTGA+TGG - chr2.3:8064484-8064503 None:intergenic 45.0%
!! TTGGGTTGGGCTATAGGATT+TGG + chr2.3:8064705-8064724 MS.gene42840:CDS 45.0%
AAGCCTCATCCATGCAGCAA+TGG + chr2.3:8064453-8064472 MS.gene42840:CDS 50.0%
ACAGGATGCTATTGCCAGGT+TGG + chr2.3:8065616-8065635 MS.gene42840:CDS 50.0%
ATTGTGCCCTGCAAGTGCAA+AGG - chr2.3:8064399-8064418 None:intergenic 50.0%
CCAGTAACCTTATGCCAACC+TGG - chr2.3:8065633-8065652 None:intergenic 50.0%
CGTTTCACAGCAGCATCACT+AGG + chr2.3:8064567-8064586 MS.gene42840:CDS 50.0%
CTGGATGTTAGTCGTACTCG+GGG + chr2.3:8066019-8066038 MS.gene42840:CDS 50.0%
CTTGACAGGATGCTATTGCC+AGG + chr2.3:8065612-8065631 MS.gene42840:CDS 50.0%
GAACCATTGCTGCATGGATG+AGG - chr2.3:8064459-8064478 None:intergenic 50.0%
GCTGAATGTTCTTGGCATGG+TGG + chr2.3:8065695-8065714 MS.gene42840:CDS 50.0%
GCTGCATGGATGAGGCTTTA+AGG - chr2.3:8064451-8064470 None:intergenic 50.0%
GCTTCAGGAGCTGCATTAAC+CGG + chr2.3:8064660-8064679 MS.gene42840:CDS 50.0%
TATCGGGCTGAAAAGCCACA+TGG + chr2.3:8064786-8064805 MS.gene42840:CDS 50.0%
TGGATGTTAGTCGTACTCGG+GGG + chr2.3:8066020-8066039 MS.gene42840:CDS 50.0%
TTGCATCTGCTCGTAAGTGG+AGG + chr2.3:8064841-8064860 MS.gene42840:CDS 50.0%
! AGTAATGGAAGAAAGCGCGG+CGG + chr2.3:8063659-8063678 MS.gene42840:CDS 50.0%
! CCAGGTTGGCATAAGGTTAC+TGG + chr2.3:8065630-8065649 MS.gene42840:CDS 50.0%
! GCTATTGCCAGGTTGGCATA+AGG + chr2.3:8065623-8065642 MS.gene42840:CDS 50.0%
! GGGATGTCACTTGCAAGCAA+TGG + chr2.3:8063855-8063874 MS.gene42840:CDS 50.0%
! TGTGGCTGCCTTTGTTGGTT+TGG + chr2.3:8064737-8064756 MS.gene42840:CDS 50.0%
!! GCCACATGGAAGTGCGATTT+TGG + chr2.3:8064800-8064819 MS.gene42840:CDS 50.0%
AGTGCTGCCTCCACCAATAC+CGG + chr2.3:8064929-8064948 MS.gene42840:CDS 55.0%
CCTCCACCAATACCGGGAAA+AGG + chr2.3:8064936-8064955 MS.gene42840:CDS 55.0%
TGTGCTGTGGCTGCCTTTGT+TGG + chr2.3:8064732-8064751 MS.gene42840:CDS 55.0%
!!! CCTTTTCCCGGTATTGGTGG+AGG - chr2.3:8064939-8064958 None:intergenic 55.0%
GCAACGATTGCGGCCACTAC+TGG - chr2.3:8063984-8064003 None:intergenic 60.0%
GTGCTGCCTCCACCAATACC+GGG + chr2.3:8064930-8064949 MS.gene42840:CDS 60.0%
! ATGGAAGAAAGCGCGGCGGT+TGG + chr2.3:8063663-8063682 MS.gene42840:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 8063611 8066100 8063611 ID=MS.gene42840
chr2.3 mRNA 8063611 8066100 8063611 ID=MS.gene42840.t1;Parent=MS.gene42840
chr2.3 exon 8063611 8063707 8063611 ID=MS.gene42840.t1.exon1;Parent=MS.gene42840.t1
chr2.3 CDS 8063611 8063707 8063611 ID=cds.MS.gene42840.t1;Parent=MS.gene42840.t1
chr2.3 exon 8063844 8064061 8063844 ID=MS.gene42840.t1.exon2;Parent=MS.gene42840.t1
chr2.3 CDS 8063844 8064061 8063844 ID=cds.MS.gene42840.t1;Parent=MS.gene42840.t1
chr2.3 exon 8064411 8064964 8064411 ID=MS.gene42840.t1.exon3;Parent=MS.gene42840.t1
chr2.3 CDS 8064411 8064964 8064411 ID=cds.MS.gene42840.t1;Parent=MS.gene42840.t1
chr2.3 exon 8065317 8066100 8065317 ID=MS.gene42840.t1.exon4;Parent=MS.gene42840.t1
chr2.3 CDS 8065317 8066100 8065317 ID=cds.MS.gene42840.t1;Parent=MS.gene42840.t1
Gene Sequence

>MS.gene42840

ATGGATGGTCAGGTAGCAGCATCCTCAAAAGAAGCAGATGAGAGCTTGAGTAATGGAAGAAAGCGCGGCGGTTGGATAAGTTTCCCCTTCTTCATTGGTCTCTCTCTTTTTCCCTTTCATTTTTTAACTCATCAACATTATTAATTCACTCACTTTTACACATCAAAATCATTTTGTTTGAGTCTTATTAGATAAATGTTTATATTTTATTTTATACTGTTGATTAACTATAGGTATGATAGCGGGGATGTCACTTGCAAGCAATGGAATAGTGGGAAACTTGATTGTATATCTTACAAGAGAATTCAATATAAAGAGCATCACTGCAACTCAAATTTATAATGTTGTCGTTGGAAGCACCAGTATATTTCCAGTAGTGGCCGCAATCGTTGCTGATTCTTTCTTTGGTTCTTTCTCTGTTGCCTTTGCTTCTTCTTGTATTTTATTGCTGGTAAACTTTAACACTCAATCCAAATTATATTGCATATATGCTAGCATTTTGTTTTGTCACGATAGACTAATAGCTAGTGTGACTAAGATAAATATTTACATCTAATATGGTTAGTCTATTCCATCATCAGTCATCACATATTTCCTCTATTACGTTCTTTTTTTAGAAGTGGTTTTTGAGTAAGTCATTAGAACGTTTGTTTACTTTTTTCAAGTTGGATATTGCATGTTCGAATTTGTGTCCCAGCGTGCCAAATGTCCTATTTTACAATATGATGTGCATTTTCATAACCAAACATACACTTATTTGTGGTAATATCTCTTTTAAACTTTCACCTTTGCACTTGCAGGGCACAATTCTATTATTCTTGACGGCAACTATCAATTCCTTAAAGCCTCATCCATGCAGCAATGGTTCATCCATCACATGCAAACCACCAACAAGAATCCAATACACAGTTCTATACATAAGCATAGTCCTAATATCAATTGGATTTGGTGGTTCACGTTTCACAGCAGCATCACTAGGTGCAAATCAGTTTGACAAACCAGAACATCAAGGAATATTTTTCAACTGGTACTTCTTCACTTTCTATGTTGCTTCAGGAGCTGCATTAACCGGAATTATTTACATCGAAGATAATTTGGGTTGGGCTATAGGATTTGGTATCTGTGCTGTGGCTGCCTTTGTTGGTTTGGTTGTTTTTGTGTTGGGTTATCGATTTTATCGGGCTGAAAAGCCACATGGAAGTGCGATTTTGGATTTGGGACGTGTTTTTGTTGCATCTGCTCGTAAGTGGAGGTGTAAGCTCTCTTCCAGAGTAGAGGATTACTACGGTAGTTCTTCTGGTCATGATGTTTTGATTCAAGTGCTGCCTCCACCAATACCGGGAAAAGGATTAAGGTACTAAGTATTAACCACACTTATTCTCATAGTTCAAATGTAGGGGAACGTAGTAACCTTGAATGCAGATAATCTTATTCTCATATAAAAACAACTTATAGCTTATATACAAATGATAGCTGACAGTTTAGGGGTCCAACATTGTTAGGATGTCTATTCTGTTATGTATTGCTTCTGCACTCTCGTTTATGCTTAAAATGAAACTTATAGCTTATATAAAAACAATTTAATTTGATTTTATCTTTTGTTATAACAATAACTTATAAATAAACGTCTCATTAAGCTATTTATTCAAAGAATATGCTTGTAAAGTTTTGCTATATATCATGTGCTGATCTATATCCAAATGCAGGTTTTTCAACCGTGCAGCTCTAATAAGTGATGCAGATCTACACTCAGATGGCACAATTAAGAAATCACCATGGAGACTATGCACAATTCAACAAGTGGAAGATTTCAAAAAAATAATTGGAATATTACCACTATGGACTTCAAGTCTATTCCTATCAATTCCAATAGTAATGCAAATGGACTTCATTATACTTCAAGCTTTAGTGATGGATCGTTCATTAGGATCCCATTTTAAAATCCCAGCTGGTTCTATTTCTGTTATAGTCTTAATATCAGCACCCATTTTCCTCACTTTTCTTGACAGGATGCTATTGCCAGGTTGGCATAAGGTTACTGGAAAATCGCCTAAGCTGCTCCAACAAATAGGAGTAGGACATGTGCTGAATGTTCTTGGCATGGTGGTCTCTGCTCTTGTTGAATCGAAGAGACTCAAATTAGCATGTGTGCATGATGTTTCAATGTCTGTGTTATGGTTGTTTCCACAATTAGTGTTGGTTGGTATTGGAGAAGCTTTTCATTTTCCAGGACAAGTTACATTCTATTATCAACAATTTCCACAATCACTAAAGAGCACATCAACTGCAGCGGTTTCAATGCTTATAGGGATTGCTTTTTACTTGAGCAATGCTTTAATTGACCAAGTTCATAGGAGTACTGATTGGCTACCTGATGACATAAATCACGGGAAGATCGACAATGTGTACTGGATGTTAGTCGTACTCGGGGGTATCAACTTTGTGTATTACTTATTTTGTTCTTATGCTTACAAGTATGAAAATGTTTAA
Protein sequence

>MS.gene42840.t1

MDGQVAASSKEADESLSNGRKRGGWISFPFFIGMIAGMSLASNGIVGNLIVYLTREFNIKSITATQIYNVVVGSTSIFPVVAAIVADSFFGSFSVAFASSCILLLGTILLFLTATINSLKPHPCSNGSSITCKPPTRIQYTVLYISIVLISIGFGGSRFTAASLGANQFDKPEHQGIFFNWYFFTFYVASGAALTGIIYIEDNLGWAIGFGICAVAAFVGLVVFVLGYRFYRAEKPHGSAILDLGRVFVASARKWRCKLSSRVEDYYGSSSGHDVLIQVLPPPIPGKGLRFFNRAALISDADLHSDGTIKKSPWRLCTIQQVEDFKKIIGILPLWTSSLFLSIPIVMQMDFIILQALVMDRSLGSHFKIPAGSISVIVLISAPIFLTFLDRMLLPGWHKVTGKSPKLLQQIGVGHVLNVLGMVVSALVESKRLKLACVHDVSMSVLWLFPQLVLVGIGEAFHFPGQVTFYYQQFPQSLKSTSTAAVSMLIGIAFYLSNALIDQVHRSTDWLPDDINHGKIDNVYWMLVVLGGINFVYYLFCSYAYKYENV