AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028817

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028817.t1 MTR_2g091175 97.554 368 6 1 1 365 1 368 0.0 750
MS.gene028817.t1 MTR_4g079700 75.278 360 84 1 4 363 9 363 0.0 585
MS.gene028817.t1 MTR_2g015720 59.563 366 137 5 1 363 1 358 2.36e-159 451
MS.gene028817.t1 MTR_4g087730 56.164 365 157 2 1 364 1 363 5.89e-153 435
MS.gene028817.t1 MTR_4g088030 56.011 366 144 4 1 364 1 351 8.34e-149 424
MS.gene028817.t1 MTR_3g049330 54.829 321 142 2 47 364 31 351 2.02e-133 385
MS.gene028817.t1 MTR_2g073510 55.799 319 137 3 46 360 32 350 2.90e-131 380
MS.gene028817.t1 MTR_3g021060 52.905 327 153 1 38 363 37 363 3.62e-130 377
MS.gene028817.t1 MTR_3g035830 50.448 335 165 1 30 363 14 348 2.79e-127 369
MS.gene028817.t1 MTR_3g021090 52.548 314 148 1 47 359 31 344 5.56e-124 363
MS.gene028817.t1 MTR_5g034810 51.796 334 155 4 35 364 22 353 6.71e-123 358
MS.gene028817.t1 MTR_3g464570 48.358 335 156 4 47 364 43 377 1.59e-115 340
MS.gene028817.t1 MTR_5g071350 44.504 373 166 5 17 364 44 400 2.19e-115 341
MS.gene028817.t1 MTR_2g073500 45.289 329 158 8 47 364 29 346 4.75e-101 302
MS.gene028817.t1 MTR_1g050448 42.941 340 170 8 39 363 45 375 1.42e-95 290
MS.gene028817.t1 MTR_1g111010 45.897 329 157 10 44 365 29 343 6.28e-93 282
MS.gene028817.t1 MTR_1g112210 38.040 347 194 6 31 363 43 382 1.80e-91 279
MS.gene028817.t1 MTR_1g112210 39.143 350 173 9 31 363 43 369 7.52e-91 277
MS.gene028817.t1 MTR_0136s0010 38.400 375 204 6 15 364 138 510 3.63e-90 280
MS.gene028817.t1 MTR_7g093450 40.233 343 180 6 46 364 247 588 2.09e-89 281
MS.gene028817.t1 MTR_3g464570 47.407 270 125 4 112 364 4 273 5.16e-84 256
MS.gene028817.t1 MTR_4g126950 37.318 343 186 6 46 363 108 446 5.21e-84 262
MS.gene028817.t1 MTR_5g033800 35.342 365 212 6 23 364 121 484 2.57e-83 262
MS.gene028817.t1 MTR_4g121560 38.338 373 202 9 18 364 84 454 1.86e-81 256
MS.gene028817.t1 MTR_3g070900 39.017 346 184 9 47 365 106 451 2.19e-81 256
MS.gene028817.t1 MTR_7g109550 39.759 332 176 8 47 359 137 463 3.37e-80 253
MS.gene028817.t1 MTR_8g069790 37.356 348 188 6 43 364 174 517 5.88e-80 254
MS.gene028817.t1 MTR_5g082880 38.109 349 186 10 47 365 165 513 1.42e-78 250
MS.gene028817.t1 MTR_5g059400 36.827 353 193 8 39 364 167 516 1.79e-78 250
MS.gene028817.t1 MTR_1g116130 36.827 353 193 8 39 364 167 516 1.79e-78 250
MS.gene028817.t1 MTR_3g071650 34.085 399 227 10 2 364 33 431 1.05e-75 240
MS.gene028817.t1 MTR_5g083260 37.069 348 194 7 42 364 78 425 4.57e-75 238
MS.gene028817.t1 MTR_4g016940 34.000 400 219 11 9 363 28 427 1.24e-74 237
MS.gene028817.t1 MTR_1g058380 37.026 343 189 8 47 364 55 395 8.50e-73 232
MS.gene028817.t1 MTR_8g463790 35.613 351 196 9 40 364 64 410 6.03e-71 228
MS.gene028817.t1 MTR_2g022560 37.059 340 188 7 47 361 97 435 1.10e-68 223
MS.gene028817.t1 MTR_7g094750 36.812 345 189 8 47 364 91 433 3.81e-68 221
MS.gene028817.t1 MTR_4g014430 35.632 348 198 9 36 359 97 442 4.73e-68 221
MS.gene028817.t1 MTR_4g014440 32.687 361 209 9 33 364 53 408 6.64e-67 217
MS.gene028817.t1 MTR_7g070060 31.969 391 230 10 4 365 28 411 1.89e-66 216
MS.gene028817.t1 MTR_7g068920 35.838 346 195 9 44 363 77 421 4.88e-66 215
MS.gene028817.t1 MTR_3g090120 36.202 337 191 7 47 364 129 460 4.26e-62 206
MS.gene028817.t1 MTR_5g033800 34.749 259 157 4 23 269 121 379 1.21e-54 184
MS.gene028817.t1 MTR_8g093530 30.029 343 220 6 37 364 80 417 3.49e-53 182
MS.gene028817.t1 MTR_5g069320 33.224 304 143 9 74 356 122 386 1.69e-45 160
MS.gene028817.t1 MTR_7g094750 35.294 238 140 3 47 270 91 328 5.15e-45 157
MS.gene028817.t1 MTR_7g070060 30.545 275 174 5 4 268 28 295 9.11e-45 156
MS.gene028817.t1 MTR_7g070060 30.195 308 186 9 87 365 2 309 7.99e-42 149
MS.gene028817.t1 MTR_6g016880 29.008 393 231 11 4 363 42 419 3.28e-39 144
MS.gene028817.t1 MTR_1g076690 28.792 389 230 13 12 359 184 566 4.03e-38 144
MS.gene028817.t1 MTR_5g035090 30.049 406 224 19 4 359 28 423 5.82e-38 141
MS.gene028817.t1 MTR_5g035080 30.102 392 219 17 9 359 39 416 8.31e-38 140
MS.gene028817.t1 MTR_6g061710 27.632 380 233 11 16 359 137 510 3.47e-36 138
MS.gene028817.t1 MTR_7g019120 28.161 348 207 9 46 359 78 416 1.30e-34 132
MS.gene028817.t1 MTR_6g016875 28.244 393 235 14 3 359 23 404 1.68e-34 132
MS.gene028817.t1 MTR_6g016240 30.725 345 204 12 47 359 71 412 3.20e-34 131
MS.gene028817.t1 MTR_8g093870 31.389 360 206 17 35 363 123 472 3.28e-34 132
MS.gene028817.t1 MTR_5g035150 30.636 346 204 11 47 359 85 427 7.69e-34 130
MS.gene028817.t1 MTR_8g027900 27.174 368 220 10 34 363 198 555 7.40e-32 126
MS.gene028817.t1 MTR_2g016060 28.940 349 203 13 48 359 56 396 7.44e-32 124
MS.gene028817.t1 MTR_5g035070 29.480 346 208 12 47 359 87 429 1.22e-31 124
MS.gene028817.t1 MTR_7g033230 28.532 361 205 15 40 359 257 605 8.71e-31 123
MS.gene028817.t1 MTR_7g033230 28.532 361 205 15 40 359 327 675 1.15e-30 123
MS.gene028817.t1 MTR_4g092830 27.666 347 211 13 47 359 48 388 8.26e-30 119
MS.gene028817.t1 MTR_8g104970 27.397 365 218 13 33 359 106 461 3.21e-29 118
MS.gene028817.t1 MTR_3g021150 44.737 114 62 1 231 343 1 114 4.64e-29 109
MS.gene028817.t1 MTR_4g125060 29.395 347 208 15 47 363 132 471 5.31e-29 117
MS.gene028817.t1 MTR_4g125060 29.395 347 208 15 47 363 200 539 6.09e-29 117
MS.gene028817.t1 MTR_4g125060 29.395 347 208 15 47 363 171 510 7.56e-29 117
MS.gene028817.t1 MTR_6g007777 28.788 396 218 18 14 363 80 457 2.08e-28 115
MS.gene028817.t1 MTR_3g109840 27.089 395 240 14 3 359 27 411 5.93e-28 114
MS.gene028817.t1 MTR_8g099300 27.066 351 215 13 44 359 71 415 1.48e-27 112
MS.gene028817.t1 MTR_7g019140 44.444 90 50 0 46 135 78 167 4.89e-22 92.0
MS.gene028817.t1 MTR_5g035120 38.095 105 65 0 37 141 65 169 1.84e-18 82.4
MS.gene028817.t1 MTR_2g022580 32.773 119 66 3 107 211 2 120 2.56e-12 63.9
MS.gene028817.t1 MTR_3g021080 31.683 101 49 2 265 364 99 180 5.29e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028817.t1 AT2G42570 66.279 344 111 3 26 364 22 365 3.96e-180 504
MS.gene028817.t1 AT2G31110 62.928 321 118 1 44 363 42 362 6.60e-166 468
MS.gene028817.t1 AT1G29050 59.882 339 134 2 27 363 40 378 1.51e-157 447
MS.gene028817.t1 AT2G34070 59.692 325 129 2 41 363 59 383 2.62e-150 429
MS.gene028817.t1 AT3G14850 55.108 323 141 2 42 360 29 351 4.32e-131 379
MS.gene028817.t1 AT1G78710 50.153 327 157 4 42 364 33 357 2.52e-121 355
MS.gene028817.t1 AT2G30900 50.000 324 156 4 47 364 43 366 1.68e-119 350
MS.gene028817.t1 AT2G34070 60.643 249 96 2 117 363 1 249 1.94e-111 325
MS.gene028817.t1 AT5G58600 47.619 336 158 5 47 364 66 401 1.21e-110 329
MS.gene028817.t1 AT2G31110 61.927 218 83 0 44 261 42 259 7.85e-108 317
MS.gene028817.t1 AT2G30010 45.322 342 163 5 47 364 56 397 3.25e-105 315
MS.gene028817.t1 AT2G30010 45.322 342 163 5 47 364 99 440 3.32e-105 317
MS.gene028817.t1 AT2G31110 63.768 207 74 1 158 363 8 214 4.15e-104 305
MS.gene028817.t1 AT3G14850 55.242 248 107 2 117 360 1 248 2.35e-95 285
MS.gene028817.t1 AT3G54260 42.515 334 167 6 47 364 51 375 9.47e-92 280
MS.gene028817.t1 AT5G06700 42.274 343 171 7 47 364 255 595 4.39e-91 285
MS.gene028817.t1 AT3G12060 39.678 373 197 7 19 364 165 536 3.82e-89 279
MS.gene028817.t1 AT1G78710 41.896 327 131 5 42 364 26 297 1.44e-87 266
MS.gene028817.t1 AT2G30900 50.424 236 109 3 47 280 43 272 1.18e-84 258
MS.gene028817.t1 AT3G62390 38.544 371 201 9 19 364 104 472 1.70e-82 259
MS.gene028817.t1 AT5G58600 51.786 224 106 2 47 268 66 289 6.06e-82 252
MS.gene028817.t1 AT5G20590 38.571 350 184 9 41 364 136 480 7.21e-82 258
MS.gene028817.t1 AT5G49340 37.960 353 190 8 39 364 92 442 1.23e-80 254
MS.gene028817.t1 AT1G60790 38.211 369 194 10 26 364 169 533 4.05e-80 255
MS.gene028817.t1 AT3G55990 37.464 347 190 9 46 365 139 485 3.52e-77 246
MS.gene028817.t1 AT2G40150 35.977 353 193 8 46 365 70 422 8.55e-76 240
MS.gene028817.t1 AT3G11030 38.000 350 179 10 47 364 106 449 9.19e-75 238
MS.gene028817.t1 AT2G40160 35.817 349 192 9 47 364 77 424 3.37e-74 237
MS.gene028817.t1 AT2G40160 35.569 343 191 8 47 359 77 419 5.35e-74 236
MS.gene028817.t1 AT1G73140 36.544 353 194 8 38 364 58 406 4.61e-73 233
MS.gene028817.t1 AT5G19160 36.388 371 193 10 24 361 82 442 5.27e-73 234
MS.gene028817.t1 AT5G01360 35.756 344 195 7 46 363 35 378 4.93e-72 229
MS.gene028817.t1 AT5G01360 35.756 344 195 7 46 363 91 434 2.26e-71 229
MS.gene028817.t1 AT5G01620 34.402 343 198 8 42 359 113 453 9.93e-71 228
MS.gene028817.t1 AT5G01620 34.402 343 198 8 42 359 105 445 1.14e-70 228
MS.gene028817.t1 AT5G01620 34.402 343 198 8 42 359 105 445 1.14e-70 228
MS.gene028817.t1 AT2G40320 35.632 348 199 8 42 364 76 423 8.05e-70 225
MS.gene028817.t1 AT3G06080 36.550 342 189 7 47 361 103 443 1.21e-69 226
MS.gene028817.t1 AT5G06230 35.574 357 201 7 36 364 10 365 4.23e-68 219
MS.gene028817.t1 AT5G06230 35.574 357 201 7 36 364 51 406 1.17e-67 219
MS.gene028817.t1 AT3G11570 37.538 325 180 7 63 365 98 421 5.39e-67 218
MS.gene028817.t1 AT2G38320 33.333 351 204 9 44 364 55 405 3.79e-64 210
MS.gene028817.t1 AT1G48880 33.699 365 195 8 21 364 102 440 1.14e-61 204
MS.gene028817.t1 AT3G62390 37.918 269 149 6 19 269 104 372 2.77e-57 192
MS.gene028817.t1 AT5G20590 39.431 246 128 7 41 269 136 377 1.38e-55 186
MS.gene028817.t1 AT5G19160 36.923 260 144 4 24 269 82 335 1.00e-53 181
MS.gene028817.t1 AT2G38320 31.056 322 194 7 71 364 1 322 4.54e-53 179
MS.gene028817.t1 AT2G40160 35.470 234 139 4 47 268 77 310 3.09e-50 171
MS.gene028817.t1 AT3G06080 37.131 237 135 3 47 269 103 339 4.24e-49 169
MS.gene028817.t1 AT5G06230 35.827 254 143 4 36 269 51 304 4.28e-46 160
MS.gene028817.t1 AT2G14530 29.306 389 239 12 7 363 22 406 3.35e-40 147
MS.gene028817.t1 AT5G51640 28.571 378 222 11 23 359 114 484 4.81e-40 148
MS.gene028817.t1 AT1G70230 29.513 349 198 11 47 363 79 411 6.23e-40 146
MS.gene028817.t1 AT4G25360 27.990 393 219 12 18 359 141 520 7.86e-37 140
MS.gene028817.t1 AT4G25360 27.990 393 219 12 18 359 141 520 7.86e-37 140
MS.gene028817.t1 AT5G64020 29.494 356 208 12 47 363 57 408 5.70e-35 132
MS.gene028817.t1 AT5G64470 26.744 344 223 10 47 364 55 395 1.53e-34 131
MS.gene028817.t1 AT1G01430 29.301 372 215 12 32 365 88 449 1.24e-33 130
MS.gene028817.t1 AT5G64470 26.857 350 221 11 47 364 55 401 3.67e-33 127
MS.gene028817.t1 AT5G15890 28.065 367 219 12 25 359 165 518 1.48e-32 128
MS.gene028817.t1 AT5G15900 26.934 349 217 11 47 363 67 409 3.93e-32 125
MS.gene028817.t1 AT2G37720 30.939 362 183 14 47 363 143 482 4.67e-32 126
MS.gene028817.t1 AT5G15900 26.934 349 217 11 47 363 86 428 4.77e-32 125
MS.gene028817.t1 AT5G20680 28.226 372 220 14 23 363 102 457 1.95e-31 124
MS.gene028817.t1 AT3G28150 30.966 352 199 16 46 363 69 410 2.89e-31 122
MS.gene028817.t1 AT3G02440 26.513 347 212 12 47 359 127 464 4.34e-31 123
MS.gene028817.t1 AT3G02440 26.513 347 212 12 47 359 135 472 4.66e-31 123
MS.gene028817.t1 AT5G20680 28.226 372 220 14 23 363 178 533 5.26e-31 123
MS.gene028817.t1 AT5G20680 29.023 348 208 13 47 363 212 551 7.01e-31 123
MS.gene028817.t1 AT5G20680 29.023 348 208 13 47 363 212 551 7.01e-31 123
MS.gene028817.t1 AT5G20680 29.023 348 208 13 47 363 212 551 7.01e-31 123
MS.gene028817.t1 AT5G20680 29.023 348 208 13 47 363 212 551 7.01e-31 123
MS.gene028817.t1 AT4G11090 26.463 393 230 16 21 365 47 428 7.48e-29 116
MS.gene028817.t1 AT4G01080 27.901 362 214 12 33 359 77 426 2.91e-28 115
MS.gene028817.t1 AT4G23790 25.683 366 213 14 46 365 78 430 5.26e-23 99.8
MS.gene028817.t1 AT5G64470 26.378 254 166 8 47 282 55 305 5.49e-21 92.8
MS.gene028817.t1 AT5G64470 26.378 254 166 8 47 282 55 305 7.25e-21 92.4

Find 75 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCATGCAGCTCTCTT+TGG 0.210145 2.3:+9129912 MS.gene028817:CDS
TCTATTCCGCACACCATATT+TGG 0.219542 2.3:+9128805 MS.gene028817:CDS
TATCTCCACAATAACATTTC+AGG 0.240854 2.3:+9126420 MS.gene028817:CDS
AGAGAAACACAACCATTCTT+TGG 0.302957 2.3:+9129687 MS.gene028817:CDS
CGGTCAAGGTCTACCAAATA+TGG 0.307611 2.3:-9128818 None:intergenic
GTTTGACAACTTGGGCTAGA+TGG 0.309964 2.3:+9129120 MS.gene028817:CDS
TGTAGTCATTGGTGTCTTCC+AGG 0.323483 2.3:+9129867 MS.gene028817:CDS
TAGCATGCATGATTCATTCT+TGG 0.334243 2.3:+9126359 MS.gene028817:CDS
GTGTGCGGAATAGAAATAAT+TGG 0.347634 2.3:-9128796 None:intergenic
CAAGCCATTGGTGTTCCTGC+TGG 0.351195 2.3:-9129720 None:intergenic
AGAAGAACATTCCAAGTATC+AGG 0.357411 2.3:-9129894 None:intergenic
TCTACAAAGGTTTGACAACT+TGG 0.371927 2.3:+9129111 MS.gene028817:CDS
TTCCAGGACTTCCTGATACT+TGG 0.372897 2.3:+9129883 MS.gene028817:CDS
CAATTCAATTGTCAAAAGTA+TGG 0.391925 2.3:+9125947 MS.gene028817:CDS
TATTTCTGATACTGAGTATC+AGG 0.397938 2.3:-9125974 None:intergenic
ACCTTGACCGTGAGAACATT+GGG 0.399023 2.3:+9128831 MS.gene028817:CDS
CTCATTACTACTACTGGAAA+TGG 0.409028 2.3:-9125825 None:intergenic
AGCATGCATGATTCATTCTT+GGG 0.415751 2.3:+9126360 MS.gene028817:CDS
AAGAAGACCTTGGTTTGAGC+TGG 0.426020 2.3:-9129161 None:intergenic
GTAACTGGTTTCGTGGCAAA+TGG 0.428187 2.3:+9125867 MS.gene028817:CDS
CTCAGTATCAGAAATATAGA+TGG 0.444563 2.3:+9125981 MS.gene028817:CDS
TGCCAACAGATTGTAGTCAT+TGG 0.444942 2.3:+9129856 MS.gene028817:CDS
AGCAGGAACACCAATGGCTT+GGG 0.468530 2.3:+9129722 MS.gene028817:CDS
AACTTGCTGGAAGATGTAAC+TGG 0.472478 2.3:+9125852 MS.gene028817:CDS
TTCACTATTACCCAAGCCAT+TGG 0.475251 2.3:-9129732 None:intergenic
TTTGACAACTTGGGCTAGAT+GGG 0.479154 2.3:+9129121 MS.gene028817:CDS
ATGGAGAGGGATGGATGTAT+TGG 0.479481 2.3:+9128892 MS.gene028817:CDS
ATAACACTACTATACCCTTC+TGG 0.481855 2.3:-9129834 None:intergenic
CATTGGGCGTGTTCTAAAGT+TGG 0.484902 2.3:+9128847 MS.gene028817:CDS
ATTGAATTGTGGATCTATGA+AGG 0.486450 2.3:-9125933 None:intergenic
TTCCAAGTATCAGGAAGTCC+TGG 0.489986 2.3:-9129885 None:intergenic
AGTAATGAGAGAAAACTTGC+TGG 0.493842 2.3:+9125839 MS.gene028817:CDS
GGTAGTTGTTGCTGTTGTGT+TGG 0.501527 2.3:-9125804 None:intergenic
AAGCCATTGGTGTTCCTGCT+GGG 0.502968 2.3:-9129719 None:intergenic
CAGCAGGAACACCAATGGCT+TGG 0.504711 2.3:+9129721 MS.gene028817:CDS
CGGTTGTGCATTTCCAGTGT+GGG 0.509875 2.3:-9128939 None:intergenic
CTTTGTAGAACGCAATGAAA+CGG 0.518428 2.3:-9129097 None:intergenic
TGCATGCTAGTGAATTGAAC+TGG 0.523399 2.3:-9126345 None:intergenic
TAACTGGTTTCGTGGCAAAT+GGG 0.526407 2.3:+9125868 MS.gene028817:CDS
CGTTTCATTGCGTTCTACAA+AGG 0.529142 2.3:+9129098 MS.gene028817:CDS
GATAGCACTTTGCTTTGAGA+AGG 0.530854 2.3:-9126401 None:intergenic
CTACAAAGGTTTGACAACTT+GGG 0.543154 2.3:+9129112 MS.gene028817:CDS
TGGCATTGGTGGACCCACAC+TGG 0.546946 2.3:+9128926 MS.gene028817:CDS
GACCTTGACCGTGAGAACAT+TGG 0.550954 2.3:+9128830 MS.gene028817:CDS
TCTATGAAGGGACAAGAAGA+AGG 0.551169 2.3:-9125920 None:intergenic
GAAAAGATGCACATCCAGAA+GGG 0.559145 2.3:+9129820 MS.gene028817:CDS
AGAGTGGTAATGCATGGAGA+GGG 0.562652 2.3:+9128879 MS.gene028817:CDS
TTTGGTTTGAAGTACCCAGC+AGG 0.566621 2.3:+9129705 MS.gene028817:CDS
GGATCATAGAGAGGATACGA+AGG 0.570131 2.3:-9125899 None:intergenic
GGGTACTTCAAACCAAAGAA+TGG 0.571214 2.3:-9129699 None:intergenic
CTTTCACTTGTTCTATACCA+AGG 0.575010 2.3:+9126008 MS.gene028817:CDS
CAGATGGGATTATATTCAAG+AGG 0.575480 2.3:+9129049 MS.gene028817:intron
ACTAACCTGAAATGTTATTG+TGG 0.576103 2.3:-9126425 None:intergenic
CAATAAAGAGTGGTAATGCA+TGG 0.581612 2.3:+9128873 MS.gene028817:CDS
ACGGTTGTGCATTTCCAGTG+TGG 0.583332 2.3:-9128940 None:intergenic
AGAAAAGATGCACATCCAGA+AGG 0.583703 2.3:+9129819 MS.gene028817:CDS
AAGAGTGGTAATGCATGGAG+AGG 0.584992 2.3:+9128878 MS.gene028817:CDS
CACCAATGACTACAATCTGT+TGG 0.588126 2.3:-9129858 None:intergenic
GCCCAATGTTCTCACGGTCA+AGG 0.590015 2.3:-9128832 None:intergenic
ACAACTTACTCGTAATGCAC+AGG 0.597709 2.3:-9129197 None:intergenic
TTGAATTGTGGATCTATGAA+GGG 0.607685 2.3:-9125932 None:intergenic
TGTAAATCCAGCTCAAACCA+AGG 0.609530 2.3:+9129154 MS.gene028817:CDS
TGGTAATGCATGGAGAGGGA+TGG 0.611599 2.3:+9128883 MS.gene028817:CDS
GGAAGATGTAACTGGTTTCG+TGG 0.617818 2.3:+9125860 MS.gene028817:CDS
CTTGGTATAGAACAAGTGAA+AGG 0.623660 2.3:-9126007 None:intergenic
AGATGGGATTATATTCAAGA+GGG 0.628534 2.3:+9129050 MS.gene028817:intron
GAACACGCCCAATGTTCTCA+CGG 0.633134 2.3:-9128838 None:intergenic
TTATATTCAAGAGGGTGGCA+AGG 0.635985 2.3:+9129058 MS.gene028817:CDS
TGGGATTATATTCAAGAGGG+TGG 0.638991 2.3:+9129053 MS.gene028817:CDS
CAAGAAGAAGGATCATAGAG+AGG 0.640153 2.3:-9125908 None:intergenic
GTACCCAGCAGGAACACCAA+TGG 0.661011 2.3:+9129716 MS.gene028817:CDS
GGTCTACCAAATATGGTGTG+CGG 0.672109 2.3:-9128811 None:intergenic
GATCATAGAGAGGATACGAA+GGG 0.672935 2.3:-9125898 None:intergenic
GTCACATCTAGAAAATACAC+TGG 0.675733 2.3:-9129780 None:intergenic
AAGTTGGACTCAATAAAGAG+TGG 0.679146 2.3:+9128863 MS.gene028817:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAATACATTTATTG+GGG + chr2.3:9126968-9126987 MS.gene028817:intron 10.0%
!! TTTATCAACTATATTTATAA+TGG + chr2.3:9129605-9129624 MS.gene028817:intron 10.0%
!!! CTATATATTTTATTCATTAT+AGG + chr2.3:9128128-9128147 MS.gene028817:intron 10.0%
!!! TTATTATTTGAATTATTTTC+AGG + chr2.3:9128763-9128782 MS.gene028817:intron 10.0%
!! AATATAAATTACTAGAAGAA+AGG - chr2.3:9128406-9128425 None:intergenic 15.0%
!! ACAAAAAATAAAATTTGAAG+TGG + chr2.3:9128066-9128085 MS.gene028817:intron 15.0%
!! AGAATAATACAATATTAGTA+TGG + chr2.3:9127520-9127539 MS.gene028817:intron 15.0%
!! ATGTACAATTATTATATGTA+AGG + chr2.3:9128559-9128578 MS.gene028817:intron 15.0%
!! GTAAATAAATTATATGTTAG+TGG + chr2.3:9127494-9127513 MS.gene028817:intron 15.0%
!! TACTAAAGTTTCTATATAAA+GGG - chr2.3:9127744-9127763 None:intergenic 15.0%
!! TTAAAAAATACATTTATTGG+GGG + chr2.3:9126969-9126988 MS.gene028817:intron 15.0%
!! TTACTAAAGTTTCTATATAA+AGG - chr2.3:9127745-9127764 None:intergenic 15.0%
!!! AATGTTTTTTTACAGAATTA+CGG + chr2.3:9129268-9129287 MS.gene028817:intron 15.0%
!!! ATTTTTATTATTTTCCATGT+TGG + chr2.3:9126711-9126730 MS.gene028817:intron 15.0%
!!! CAAAAAATAAAATTTGAAGT+GGG + chr2.3:9128067-9128086 MS.gene028817:intron 15.0%
!!! GATCATGAATATAATTTTAT+TGG - chr2.3:9127702-9127721 None:intergenic 15.0%
!!! TTCAATACAAATTTCATTTT+TGG - chr2.3:9127373-9127392 None:intergenic 15.0%
!!! TTTGATACTTTTGAATTTAA+TGG + chr2.3:9126487-9126506 MS.gene028817:intron 15.0%
!! AAAGAAATCATTAGAATGTT+TGG + chr2.3:9129391-9129410 MS.gene028817:intron 20.0%
!! AAATAGAACCAAATATAAGA+CGG - chr2.3:9127330-9127349 None:intergenic 20.0%
!! ATAAAACTTAGTCTAGTAAT+TGG - chr2.3:9129590-9129609 None:intergenic 20.0%
!! ATTACTATCTATAATTACCA+TGG - chr2.3:9126894-9126913 None:intergenic 20.0%
!! ATTTGAAGAAAAACAAAACA+TGG - chr2.3:9126632-9126651 None:intergenic 20.0%
!! CATAATCAATTCTGTTATTA+AGG + chr2.3:9128987-9129006 MS.gene028817:intron 20.0%
!! GCTATTCACATTAAAAAAAT+AGG + chr2.3:9128012-9128031 MS.gene028817:intron 20.0%
!! GTACTACAATTTAATTCATA+TGG - chr2.3:9128093-9128112 None:intergenic 20.0%
!! GTATGATATTTGGTAAATTA+GGG + chr2.3:9129629-9129648 MS.gene028817:intron 20.0%
!! TAAAAAAAGATACAAACTAG+TGG + chr2.3:9127543-9127562 MS.gene028817:intron 20.0%
!! TAAAAAATACATTTATTGGG+GGG + chr2.3:9126970-9126989 MS.gene028817:intron 20.0%
!! TATGATATTTGGTAAATTAG+GGG + chr2.3:9129630-9129649 MS.gene028817:intron 20.0%
!! TGATCATTACAGTTTAAAAA+GGG - chr2.3:9127896-9127915 None:intergenic 20.0%
!! TGTATGATATTTGGTAAATT+AGG + chr2.3:9129628-9129647 MS.gene028817:intron 20.0%
!! TTAGAAAATGAAAATGTGTT+TGG + chr2.3:9126236-9126255 MS.gene028817:intron 20.0%
!! TTATAATGGTGTATGATATT+TGG + chr2.3:9129619-9129638 MS.gene028817:intron 20.0%
!! TTATGAAAAAACTATTACCA+TGG - chr2.3:9126865-9126884 None:intergenic 20.0%
!! TTCTAGTAATTTATATTCCA+TGG + chr2.3:9128409-9128428 MS.gene028817:intron 20.0%
!! TTGATCATTACAGTTTAAAA+AGG - chr2.3:9127897-9127916 None:intergenic 20.0%
!! TTTAAATTTCAGTAGAATCA+GGG + chr2.3:9129305-9129324 MS.gene028817:intron 20.0%
!! TTTGAAGAAAAACAAAACAT+GGG - chr2.3:9126631-9126650 None:intergenic 20.0%
!!! AAATTATGTTGGTTATGTTT+TGG + chr2.3:9126515-9126534 MS.gene028817:intron 20.0%
!!! AACTTTTATAAATCAACTGA+CGG - chr2.3:9128612-9128631 None:intergenic 20.0%
!!! ATTAGCAATAATTAGTGTTT+TGG + chr2.3:9127776-9127795 MS.gene028817:intron 20.0%
!!! TAAATTCAAGAGATTTTGTT+TGG - chr2.3:9125781-9125800 None:intergenic 20.0%
!!! TTGAATTATTTTCAGGATTA+TGG + chr2.3:9128770-9128789 MS.gene028817:intron 20.0%
!!! TTTTAAATTTCAGTAGAATC+AGG + chr2.3:9129304-9129323 MS.gene028817:intron 20.0%
!!! TTTTTTCATAAAAAATGCCA+TGG + chr2.3:9126874-9126893 MS.gene028817:intron 20.0%
! AAAAGATAATCCCTTCAAAA+TGG + chr2.3:9128251-9128270 MS.gene028817:intron 25.0%
! AACAGAATTGATTATGATCA+TGG - chr2.3:9128983-9129002 None:intergenic 25.0%
! AATCAATTCTGTTATTAAGG+AGG + chr2.3:9128990-9129009 MS.gene028817:intron 25.0%
! ACTCAATAAAGTTTCCAATT+AGG - chr2.3:9126592-9126611 None:intergenic 25.0%
! AGTTTCTATATAAAGGGAAA+AGG - chr2.3:9127738-9127757 None:intergenic 25.0%
! ATGATATTTGGTAAATTAGG+GGG + chr2.3:9129631-9129650 MS.gene028817:intron 25.0%
! CAATTCAATTGTCAAAAGTA+TGG + chr2.3:9125947-9125966 MS.gene028817:CDS 25.0%
! GAGTAAATGTATCATAATCA+CGG - chr2.3:9126136-9126155 None:intergenic 25.0%
! GATCATTACAGTTTAAAAAG+GGG - chr2.3:9127895-9127914 None:intergenic 25.0%
! GGAAAAAAGATTATGTTTGT+TGG + chr2.3:9126304-9126323 MS.gene028817:CDS 25.0%
! GTAAATGATAGTAATAACCA+TGG - chr2.3:9126837-9126856 None:intergenic 25.0%
! TAACTAGCTAGTATAATGTT+TGG - chr2.3:9126164-9126183 None:intergenic 25.0%
! TAATAAATGTGAATCTTCCA+TGG + chr2.3:9126817-9126836 MS.gene028817:intron 25.0%
! TTACTACTAATGATGATTGT+TGG - chr2.3:9127822-9127841 None:intergenic 25.0%
! TTGATTGATGCTTATATCAA+GGG - chr2.3:9127992-9128011 None:intergenic 25.0%
! TTTGACATTTGAATTCAGAT+GGG + chr2.3:9129034-9129053 MS.gene028817:intron 25.0%
!! AACATATTTTCCTCTTACAA+AGG + chr2.3:9126928-9126947 MS.gene028817:intron 25.0%
!! CTCTAAATTTTACAAATTCG+TGG - chr2.3:9129452-9129471 None:intergenic 25.0%
!! GTTTTTAAATCCTTTGTAAG+AGG - chr2.3:9126941-9126960 None:intergenic 25.0%
!! TAAATTTTACAAATTCGTGG+TGG - chr2.3:9129449-9129468 None:intergenic 25.0%
!! TAATGGTAGTGAAATTATGT+TGG + chr2.3:9126504-9126523 MS.gene028817:intron 25.0%
!! TACTTTTGACAATTGAATTG+TGG - chr2.3:9125947-9125966 None:intergenic 25.0%
!! TTAGTGAATGTTTTGTACTA+TGG - chr2.3:9129494-9129513 None:intergenic 25.0%
!! TTATTCTTTAAAAATGTCCC+CGG - chr2.3:9126800-9126819 None:intergenic 25.0%
!! TTCATTTTCATTGAAACTAG+AGG + chr2.3:9128437-9128456 MS.gene028817:intron 25.0%
!! TTTTGACATTTGAATTCAGA+TGG + chr2.3:9129033-9129052 MS.gene028817:intron 25.0%
!! TTTTTGTTCTATTGAGAACA+AGG - chr2.3:9128053-9128072 None:intergenic 25.0%
!!! AATGTGTTTGGTACTTTTTT+AGG + chr2.3:9126248-9126267 MS.gene028817:intron 25.0%
!!! ACAAAAGTGTCACAAAATAT+TGG + chr2.3:9128350-9128369 MS.gene028817:intron 25.0%
!!! AGAAAAAGGCACTATATATT+AGG - chr2.3:9127659-9127678 None:intergenic 25.0%
!!! CAAAAGTGTCACAAAATATT+GGG + chr2.3:9128351-9128370 MS.gene028817:intron 25.0%
!!! GTTTTTTTTTGTTGTGAAAC+CGG - chr2.3:9127629-9127648 None:intergenic 25.0%
!!! TTTGAAGGGATTATCTTTTT+TGG - chr2.3:9128250-9128269 None:intergenic 25.0%
AAAAACTATTACCATGGCAA+TGG - chr2.3:9126859-9126878 None:intergenic 30.0%
AACAGAAGCTATGATAGAAA+TGG - chr2.3:9126049-9126068 None:intergenic 30.0%
AATTCCTAAAAAGAAGACCT+TGG - chr2.3:9129174-9129193 None:intergenic 30.0%
ACTAACCTGAAATGTTATTG+TGG - chr2.3:9126428-9126447 None:intergenic 30.0%
AGAAAATAGACATCACTGAA+AGG + chr2.3:9128461-9128480 MS.gene028817:intron 30.0%
AGAAGAAGTAAAAACAGAGT+CGG - chr2.3:9125746-9125765 None:intergenic 30.0%
AGATGGGATTATATTCAAGA+GGG + chr2.3:9129050-9129069 MS.gene028817:intron 30.0%
ATTGAATTGTGGATCTATGA+AGG - chr2.3:9125936-9125955 None:intergenic 30.0%
CTCAGTATCAGAAATATAGA+TGG + chr2.3:9125981-9126000 MS.gene028817:CDS 30.0%
CTTGATTGATGCTTATATCA+AGG - chr2.3:9127993-9128012 None:intergenic 30.0%
GGTGTTAAATATAGATCCTA+CGG - chr2.3:9128962-9128981 None:intergenic 30.0%
GTGAGCAATAAAGTATGAAA+CGG + chr2.3:9126750-9126769 MS.gene028817:intron 30.0%
TATCTCCACAATAACATTTC+AGG + chr2.3:9126420-9126439 MS.gene028817:CDS 30.0%
TCCTATGCAAAGAAAGAAAA+AGG - chr2.3:9127673-9127692 None:intergenic 30.0%
TGAGCAATAAAGTATGAAAC+GGG + chr2.3:9126751-9126770 MS.gene028817:intron 30.0%
TGTTAGATTTAGTGTAGGTT+TGG + chr2.3:9126065-9126084 MS.gene028817:intron 30.0%
TTGAATTGTGGATCTATGAA+GGG - chr2.3:9125935-9125954 None:intergenic 30.0%
! AATAAAGTATGAAACGGGTT+TGG + chr2.3:9126756-9126775 MS.gene028817:intron 30.0%
! ATCCATTTTGTAGTTACTAG+CGG + chr2.3:9126657-9126676 MS.gene028817:intron 30.0%
! GAAACACGTGTTTTCTTTTT+CGG - chr2.3:9127276-9127295 None:intergenic 30.0%
! TATTTCTGATACTGAGTATC+AGG - chr2.3:9125977-9125996 None:intergenic 30.0%
! TTTCTTTTCCTGATCAAAAC+TGG + chr2.3:9127058-9127077 MS.gene028817:intron 30.0%
! TTTTCTCTCATTACTACTAC+TGG - chr2.3:9125834-9125853 None:intergenic 30.0%
!! AATGAAAATGAAAAGTGCCA+TGG - chr2.3:9128429-9128448 None:intergenic 30.0%
!! GATTTTCTAGCAAAGTATAG+GGG + chr2.3:9126283-9126302 MS.gene028817:CDS 30.0%
!! GGATTTTCTAGCAAAGTATA+GGG + chr2.3:9126282-9126301 MS.gene028817:CDS 30.0%
!! GTAGTTTACTGACTTTATGT+AGG - chr2.3:9128332-9128351 None:intergenic 30.0%
!! TAAATATGCCAGTTTTGATC+AGG - chr2.3:9127069-9127088 None:intergenic 30.0%
!! TGGATTTTCTAGCAAAGTAT+AGG + chr2.3:9126281-9126300 MS.gene028817:CDS 30.0%
!!! AGAAGGAATACCTTGTTTTT+GGG - chr2.3:9126387-9126406 None:intergenic 30.0%
!!! ATGTATTGGTTTTCAACACA+TGG + chr2.3:9128906-9128925 MS.gene028817:CDS 30.0%
!!! CTTTTTTAGGTTCAATGCAT+TGG + chr2.3:9126261-9126280 MS.gene028817:intron 30.0%
AAACTTGCACAAAGTATGTG+AGG + chr2.3:9129361-9129380 MS.gene028817:intron 35.0%
AAGTTGGACTCAATAAAGAG+TGG + chr2.3:9128863-9128882 MS.gene028817:CDS 35.0%
ACACGATTGATTGTGATTTG+TGG + chr2.3:9128665-9128684 MS.gene028817:intron 35.0%
ACAGCAAATGCAAGAGATTA+AGG - chr2.3:9128212-9128231 None:intergenic 35.0%
ACTATCATTTACCATTGCCA+TGG + chr2.3:9126845-9126864 MS.gene028817:intron 35.0%
AGAACCAAATATAAGACGGA+TGG - chr2.3:9127326-9127345 None:intergenic 35.0%
AGAAGAACATTCCAAGTATC+AGG - chr2.3:9129897-9129916 None:intergenic 35.0%
AGAGAAACACAACCATTCTT+TGG + chr2.3:9129687-9129706 MS.gene028817:CDS 35.0%
AGCATGCATGATTCATTCTT+GGG + chr2.3:9126360-9126379 MS.gene028817:CDS 35.0%
AGCTATGATAGAAATGGAGA+AGG - chr2.3:9126043-9126062 None:intergenic 35.0%
AGTAATGAGAGAAAACTTGC+TGG + chr2.3:9125839-9125858 MS.gene028817:CDS 35.0%
ATAACACTACTATACCCTTC+TGG - chr2.3:9129837-9129856 None:intergenic 35.0%
ATACACTACATTGTTGACAC+TGG - chr2.3:9128695-9128714 None:intergenic 35.0%
ATTGTACTTTCCCTCTTCTT+TGG + chr2.3:9127022-9127041 MS.gene028817:intron 35.0%
CAAATCACAATCAATCGTGT+TGG - chr2.3:9128665-9128684 None:intergenic 35.0%
CAATTAGGTGAAAGACAGAA+AGG - chr2.3:9126577-9126596 None:intergenic 35.0%
CAGATGGGATTATATTCAAG+AGG + chr2.3:9129049-9129068 MS.gene028817:intron 35.0%
CCACATTGTGTGATAAAAGA+AGG + chr2.3:9128374-9128393 MS.gene028817:intron 35.0%
CTACAAAGGTTTGACAACTT+GGG + chr2.3:9129112-9129131 MS.gene028817:CDS 35.0%
CTCATTACTACTACTGGAAA+TGG - chr2.3:9125828-9125847 None:intergenic 35.0%
CTTGGTATAGAACAAGTGAA+AGG - chr2.3:9126010-9126029 None:intergenic 35.0%
CTTTCACTTGTTCTATACCA+AGG + chr2.3:9126008-9126027 MS.gene028817:CDS 35.0%
CTTTCTGTCTTTCACCTAAT+TGG + chr2.3:9126575-9126594 MS.gene028817:intron 35.0%
CTTTGTAGAACGCAATGAAA+CGG - chr2.3:9129100-9129119 None:intergenic 35.0%
GAATAGAGCTTAATCGCTTA+AGG - chr2.3:9127607-9127626 None:intergenic 35.0%
GAATTAAGGTGACTCAAAGT+AGG + chr2.3:9126107-9126126 MS.gene028817:intron 35.0%
GAGTGAATTCGTCAGAATTA+AGG + chr2.3:9126093-9126112 MS.gene028817:intron 35.0%
GCTTCTGTTAGATTTAGTGT+AGG + chr2.3:9126060-9126079 MS.gene028817:intron 35.0%
GTCACATCTAGAAAATACAC+TGG - chr2.3:9129783-9129802 None:intergenic 35.0%
GTGTGCGGAATAGAAATAAT+TGG - chr2.3:9128799-9128818 None:intergenic 35.0%
TAAGCGATTAAGCTCTATTC+CGG + chr2.3:9127607-9127626 MS.gene028817:intron 35.0%
TAGCATGCATGATTCATTCT+TGG + chr2.3:9126359-9126378 MS.gene028817:CDS 35.0%
TCTACAAAGGTTTGACAACT+TGG + chr2.3:9129111-9129130 MS.gene028817:CDS 35.0%
TCTCAAGTAGTGTAGTACTT+TGG + chr2.3:9128501-9128520 MS.gene028817:intron 35.0%
! CAAACCAAGGTCTTCTTTTT+AGG + chr2.3:9129167-9129186 MS.gene028817:CDS 35.0%
! CAATAAAGAGTGGTAATGCA+TGG + chr2.3:9128873-9128892 MS.gene028817:CDS 35.0%
! CCTTCTTTTATCACACAATG+TGG - chr2.3:9128377-9128396 None:intergenic 35.0%
! GCCTTTTTCTTTCTTTGCAT+AGG + chr2.3:9127669-9127688 MS.gene028817:intron 35.0%
! GTGAATGTTTTGTACTATGG+TGG - chr2.3:9129491-9129510 None:intergenic 35.0%
!! ACACATAGATTTTGGCATAC+TGG - chr2.3:9129425-9129444 None:intergenic 35.0%
!! GGGAAAAGGTATTGACAATT+TGG - chr2.3:9127724-9127743 None:intergenic 35.0%
!!! GAGAAGGAATACCTTGTTTT+TGG - chr2.3:9126388-9126407 None:intergenic 35.0%
AACACGTGTTTCTCAGACTA+TGG + chr2.3:9127284-9127303 MS.gene028817:intron 40.0%
ACAAAACATGGGTTCACACA+AGG - chr2.3:9126620-9126639 None:intergenic 40.0%
ACAACTTACTCGTAATGCAC+AGG - chr2.3:9129200-9129219 None:intergenic 40.0%
ACGTGCAAAGAAGAAAAGGT+TGG - chr2.3:9127872-9127891 None:intergenic 40.0%
AGAAAAGATGCACATCCAGA+AGG + chr2.3:9129819-9129838 MS.gene028817:CDS 40.0%
AGGAAAAGTCATGAAAGCAG+AGG - chr2.3:9128312-9128331 None:intergenic 40.0%
ATGTCTACGTTCCAAAGAAG+AGG - chr2.3:9127036-9127055 None:intergenic 40.0%
ATTCTTGGGTCCCAAAAACA+AGG + chr2.3:9126374-9126393 MS.gene028817:CDS 40.0%
CAAAGAACACATCACTTGCA+TGG - chr2.3:9126554-9126573 None:intergenic 40.0%
CAAATATAAGACGGATGGAG+CGG - chr2.3:9127321-9127340 None:intergenic 40.0%
CAAGAAGAAGGATCATAGAG+AGG - chr2.3:9125911-9125930 None:intergenic 40.0%
CACCAATGACTACAATCTGT+TGG - chr2.3:9129861-9129880 None:intergenic 40.0%
CGTTTCATTGCGTTCTACAA+AGG + chr2.3:9129098-9129117 MS.gene028817:CDS 40.0%
GAAAAGATGCACATCCAGAA+GGG + chr2.3:9129820-9129839 MS.gene028817:CDS 40.0%
GATCATAGAGAGGATACGAA+GGG - chr2.3:9125901-9125920 None:intergenic 40.0%
GGAGAAGGAGATATATACCT+TGG - chr2.3:9126028-9126047 None:intergenic 40.0%
GGGTACTTCAAACCAAAGAA+TGG - chr2.3:9129702-9129721 None:intergenic 40.0%
TCCATGTTGGTGTGAAACAA+TGG + chr2.3:9126724-9126743 MS.gene028817:intron 40.0%
TCCATTGTTTCACACCAACA+TGG - chr2.3:9126728-9126747 None:intergenic 40.0%
TCTATGAAGGGACAAGAAGA+AGG - chr2.3:9125923-9125942 None:intergenic 40.0%
TCTATTCCGCACACCATATT+TGG + chr2.3:9128805-9128824 MS.gene028817:CDS 40.0%
TGCATGCTAGTGAATTGAAC+TGG - chr2.3:9126348-9126367 None:intergenic 40.0%
TGCCAACAGATTGTAGTCAT+TGG + chr2.3:9129856-9129875 MS.gene028817:CDS 40.0%
TGGGATTATATTCAAGAGGG+TGG + chr2.3:9129053-9129072 MS.gene028817:CDS 40.0%
TGTAAATCCAGCTCAAACCA+AGG + chr2.3:9129154-9129173 MS.gene028817:CDS 40.0%
TGTCTACGTTCCAAAGAAGA+GGG - chr2.3:9127035-9127054 None:intergenic 40.0%
TTAAAAATGTCCCCGGCAAA+AGG - chr2.3:9126793-9126812 None:intergenic 40.0%
TTATATTCAAGAGGGTGGCA+AGG + chr2.3:9129058-9129077 MS.gene028817:CDS 40.0%
TTCACTATTACCCAAGCCAT+TGG - chr2.3:9129735-9129754 None:intergenic 40.0%
! AAAGTATGAAACGGGTTTGG+TGG + chr2.3:9126759-9126778 MS.gene028817:intron 40.0%
! GTCATGTGGTCCATTTTGAA+GGG - chr2.3:9128264-9128283 None:intergenic 40.0%
! TAACTGGTTTCGTGGCAAAT+GGG + chr2.3:9125868-9125887 MS.gene028817:CDS 40.0%
! TCTCTCATGCATGATTTTGC+TGG - chr2.3:9129672-9129691 None:intergenic 40.0%
! TGGTTTTCAACACATGGCAT+TGG + chr2.3:9128912-9128931 MS.gene028817:CDS 40.0%
! TGTCATGTGGTCCATTTTGA+AGG - chr2.3:9128265-9128284 None:intergenic 40.0%
! TTTGACAACTTGGGCTAGAT+GGG + chr2.3:9129121-9129140 MS.gene028817:CDS 40.0%
!! AACTTGCTGGAAGATGTAAC+TGG + chr2.3:9125852-9125871 MS.gene028817:CDS 40.0%
!! GATAGCACTTTGCTTTGAGA+AGG - chr2.3:9126404-9126423 None:intergenic 40.0%
!! TTTTCAACACATGGCATTGG+TGG + chr2.3:9128915-9128934 MS.gene028817:CDS 40.0%
!!! GTTTTCTTTTTCGGTCTAGC+TGG - chr2.3:9127267-9127286 None:intergenic 40.0%
ACCTTGACCGTGAGAACATT+GGG + chr2.3:9128831-9128850 MS.gene028817:CDS 45.0%
ATGGAGAGGGATGGATGTAT+TGG + chr2.3:9128892-9128911 MS.gene028817:CDS 45.0%
CAAAATGGACCACATGACAC+TGG + chr2.3:9128266-9128285 MS.gene028817:intron 45.0%
CGCCGCTAGTAACTACAAAA+TGG - chr2.3:9126662-9126681 None:intergenic 45.0%
CGCTCCATCCGTCTTATATT+TGG + chr2.3:9127319-9127338 MS.gene028817:intron 45.0%
CGGTCAAGGTCTACCAAATA+TGG - chr2.3:9128821-9128840 None:intergenic 45.0%
CTTCTTCATGCAGCTCTCTT+TGG + chr2.3:9129912-9129931 MS.gene028817:CDS 45.0%
GGATCATAGAGAGGATACGA+AGG - chr2.3:9125902-9125921 None:intergenic 45.0%
GGTAAATTAGGGGGAGAGAT+TGG + chr2.3:9129640-9129659 MS.gene028817:intron 45.0%
GGTCTACCAAATATGGTGTG+CGG - chr2.3:9128814-9128833 None:intergenic 45.0%
TCACTGAAAGGAGTTGAGTG+AGG + chr2.3:9128473-9128492 MS.gene028817:intron 45.0%
TTCCAAGTATCAGGAAGTCC+TGG - chr2.3:9129888-9129907 None:intergenic 45.0%
TTCCAGGACTTCCTGATACT+TGG + chr2.3:9129883-9129902 MS.gene028817:CDS 45.0%
! AAGAAGACCTTGGTTTGAGC+TGG - chr2.3:9129164-9129183 None:intergenic 45.0%
! AAGAGTGGTAATGCATGGAG+AGG + chr2.3:9128878-9128897 MS.gene028817:CDS 45.0%
! AGAGTGGTAATGCATGGAGA+GGG + chr2.3:9128879-9128898 MS.gene028817:CDS 45.0%
! CAGAGGAGTGCATCTGAATT+AGG - chr2.3:9128295-9128314 None:intergenic 45.0%
! GGAAGATGTAACTGGTTTCG+TGG + chr2.3:9125860-9125879 MS.gene028817:CDS 45.0%
! GGTAGTTGTTGCTGTTGTGT+TGG - chr2.3:9125807-9125826 None:intergenic 45.0%
! GTAACTGGTTTCGTGGCAAA+TGG + chr2.3:9125867-9125886 MS.gene028817:CDS 45.0%
! GTGGTGGCACACATAGATTT+TGG - chr2.3:9129433-9129452 None:intergenic 45.0%
! GTTACTAGCGGCGAATTTTG+TGG + chr2.3:9126669-9126688 MS.gene028817:intron 45.0%
! GTTTGACAACTTGGGCTAGA+TGG + chr2.3:9129120-9129139 MS.gene028817:CDS 45.0%
! TGTAGTCATTGGTGTCTTCC+AGG + chr2.3:9129867-9129886 MS.gene028817:CDS 45.0%
!! CATTGGGCGTGTTCTAAAGT+TGG + chr2.3:9128847-9128866 MS.gene028817:CDS 45.0%
!! ATTTAAAAAATACATTTATT+GGG + chr2.3:9126967-9126986 MS.gene028817:intron 5.0%
!! TATTTAAAAAATACATTTAT+TGG + chr2.3:9126966-9126985 MS.gene028817:intron 5.0%
!!! ATATTTAATTTATCTTTTTT+TGG + chr2.3:9127082-9127101 MS.gene028817:intron 5.0%
!!! TATTAATATTATTTTCAAAA+AGG - chr2.3:9128166-9128185 None:intergenic 5.0%
AATGGACCACATGACACTGG+TGG + chr2.3:9128269-9128288 MS.gene028817:intron 50.0%
ACGGTTGTGCATTTCCAGTG+TGG - chr2.3:9128943-9128962 None:intergenic 50.0%
ATTAGGCCACCAGTGTCATG+TGG - chr2.3:9128278-9128297 None:intergenic 50.0%
CACTGGAAATGCACAACCGT+AGG + chr2.3:9128943-9128962 MS.gene028817:intron 50.0%
CGGTTGTGCATTTCCAGTGT+GGG - chr2.3:9128942-9128961 None:intergenic 50.0%
GAACACGCCCAATGTTCTCA+CGG - chr2.3:9128841-9128860 None:intergenic 50.0%
GACCTTGACCGTGAGAACAT+TGG + chr2.3:9128830-9128849 MS.gene028817:CDS 50.0%
GGGGACGTGCAAAGAAGAAA+AGG - chr2.3:9127876-9127895 None:intergenic 50.0%
! GTGGAGGCTTTTCCTTTTGC+CGG + chr2.3:9126778-9126797 MS.gene028817:intron 50.0%
! TGGAGGCTTTTCCTTTTGCC+GGG + chr2.3:9126779-9126798 MS.gene028817:intron 50.0%
! TGGTAATGCATGGAGAGGGA+TGG + chr2.3:9128883-9128902 MS.gene028817:CDS 50.0%
!! GTATGAAACGGGTTTGGTGG+AGG + chr2.3:9126762-9126781 MS.gene028817:intron 50.0%
GCCCAATGTTCTCACGGTCA+AGG - chr2.3:9128835-9128854 None:intergenic 55.0%
! GGAGGCTTTTCCTTTTGCCG+GGG + chr2.3:9126780-9126799 MS.gene028817:intron 55.0%
!! TGGCATTGGTGGACCCACAC+TGG + chr2.3:9128926-9128945 MS.gene028817:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 9125728 9129938 9125728 ID=MS.gene028817
chr2.3 mRNA 9125728 9129938 9125728 ID=MS.gene028817.t1;Parent=MS.gene028817
chr2.3 exon 9125728 9126029 9125728 ID=MS.gene028817.t1.exon1;Parent=MS.gene028817.t1
chr2.3 CDS 9125728 9126029 9125728 ID=cds.MS.gene028817.t1;Parent=MS.gene028817.t1
chr2.3 exon 9126270 9126441 9126270 ID=MS.gene028817.t1.exon2;Parent=MS.gene028817.t1
chr2.3 CDS 9126270 9126441 9126270 ID=cds.MS.gene028817.t1;Parent=MS.gene028817.t1
chr2.3 exon 9128785 9128960 9128785 ID=MS.gene028817.t1.exon3;Parent=MS.gene028817.t1
chr2.3 CDS 9128785 9128960 9128785 ID=cds.MS.gene028817.t1;Parent=MS.gene028817.t1
chr2.3 exon 9129052 9129210 9129052 ID=MS.gene028817.t1.exon4;Parent=MS.gene028817.t1
chr2.3 CDS 9129052 9129210 9129052 ID=cds.MS.gene028817.t1;Parent=MS.gene028817.t1
chr2.3 exon 9129650 9129938 9129650 ID=MS.gene028817.t1.exon5;Parent=MS.gene028817.t1
chr2.3 CDS 9129650 9129938 9129650 ID=cds.MS.gene028817.t1;Parent=MS.gene028817.t1
Gene Sequence

>MS.gene028817

ATGGGTTTTCTGTTACCGACTCTGTTTTTACTTCTTCTGTTTTCTTCACACCAAACAAAATCTCTTGAATTTAACTCCAACACAACAGCAACAACTACCATTTCCAGTAGTAGTAATGAGAGAAAACTTGCTGGAAGATGTAACTGGTTTCGTGGCAAATGGGTCTATGACCCTTCGTATCCTCTCTATGATCCTTCTTCTTGTCCCTTCATAGATCCACAATTCAATTGTCAAAAGTATGGCAGACCTGATACTCAGTATCAGAAATATAGATGGCAACCTTTCACTTGTTCTATACCAAGGTATATATCTCCTTCTCCATTTCTATCATAGCTTCTGTTAGATTTAGTGTAGGTTTGGTATCAGAGTGAATTCGTCAGAATTAAGGTGACTCAAAGTAGGTCACCGTGATTATGATACATTTACTCTGATACCAAACATTATACTAGCTAGTTATATTGTATAACTAATTTTTATTTCTAATAGTTTTAAGTGTGATAAATGTAAGTTAGAAAATGAAAATGTGTTTGGTACTTTTTTAGGTTCAATGCATTGGATTTTCTAGCAAAGTATAGGGGAAAAAAGATTATGTTTGTTGGTGATTCTTTGAGCTTAAACCAGTTCAATTCACTAGCATGCATGATTCATTCTTGGGTCCCAAAAACAAGGTATTCCTTCTCAAAGCAAAGTGCTATCTCCACAATAACATTTCAGGTTAGTTTTTGTATTTCTATGTTTTTTTTTCTTTAATTTCGATTTTTTGATACTTTTGAATTTAATGGTAGTGAAATTATGTTGGTTATGTTTTGGTGTGTAATTGTGTCCATGCAAGTGATGTGTTCTTTGCCTTTCTGTCTTTCACCTAATTGGAAACTTTATTGAGTAATTGCCTTGTGTGAACCCATGTTTTGTTTTTCTTCAAATCTACGATCCATTTTGTAGTTACTAGCGGCGAATTTTGTGGTCAAATTATTATCTTATTTATTTTTATTATTTTCCATGTTGGTGTGAAACAATGGAGCGTGAGCAATAAAGTATGAAACGGGTTTGGTGGAGGCTTTTCCTTTTGCCGGGGACATTTTTAAAGAATAATAAATGTGAATCTTCCATGGTTATTACTATCATTTACCATTGCCATGGTAATAGTTTTTTCATAAAAAATGCCATGGTAATTATAGATAGTAATTCATGTTTTCTATTAACATATTTTCCTCTTACAAAGGATTTAAAAACAATAATATTTAAAAAATACATTTATTGGGGGGAAATATAAATATATTAACATTTTCATATGATTGTACTTTCCCTCTTCTTTGGAACGTAGACATTATTTCTTTTCCTGATCAAAACTGGCATATTTAATTTATCTTTTTTTGGTTGTTATGATTATTTAATAGATGCTTGTTAGTATTCTTCAAACTTTTATCAAAGTATATAAATTTTAAAATATTTTTTTTATACAAATATTCGATATATTTTAAAAGTTTAATTTCAATGTAATTTTTAATAAATATTTTAAAAGTTTAATTTCTTTAACCAGCTAGACCGAAAAAGAAAACACGTGTTTCTCAGACTATGGAATAGATGCATCCGCTCCATCCGTCTTATATTTGGTTCTATTTAAGTTTGCATTAAGAATGTACCAAAAATGAAATTTGTATTGAAAGAATGATTAATAGCGTTGATTTAAATGATAAATATGTGTCATTTACTAAACATTCTTATTAATTATAATTAGTAAAATAATGATAGATAATTGAAATGCAGTAAATAAATTATATGTTAGTGGAAAAGAATAATACAATATTAGTATGGTAAAAAAAGATACAAACTAGTGGTTGAAGTCTTGAACGAGAGTTTCGTCATTTATATGTCACCTTAAGCGATTAAGCTCTATTCCGGTTTCACAACAAAAAAAAACTATTGATCCTAATATATAGTGCCTTTTTCTTTCTTTGCATAGGAAATGCTCCAATAAAATTATATTCATGATCCAAATTGTCAATACCTTTTCCCTTTATATAGAAACTTTAGTAACAAATTTCTTAATTAGCAATAATTAGTGTTTTGGCATCTAAGTTTTCTAGCACTCCAACAATCATCATTAGTAGTAACTAAATTATGAACACAACGTTACTCAGCCAACCTTTTCTTCTTTGCACGTCCCCTTTTTAAACTGTAATGATCAATAATTTGATACTACTATCTAGTTTTTCTAACTTCAAGAAATATCTGATTGAATACATGCTTTATTATGTTTTCCCTTGATATAAGCATCAATCAAGCTATTCACATTAAAAAAATAGGAGTAAAAAATGTGTTCCTTGTTCTCAATAGAACAAAAAATAAAATTTGAAGTGGGCCATATGAATTAAATTGTAGTACTAACAGTAGTATATACTATATATTTTATTCATTATAGGCTTGATGACATTCCTTTTTGAAAATAATATTAATACTGCATAAAATTAGTAATTTCTTCCTTAATCTCTTGCATTTGCTGTCTTTCAATGTTTGTACCAAAAAAGATAATCCCTTCAAAATGGACCACATGACACTGGTGGCCTAATTCAGATGCACTCCTCTGCTTTCATGACTTTTCCTACATAAAGTCAGTAAACTACAAAAGTGTCACAAAATATTGGGCCACATTGTGTGATAAAAGAAGGAATTTTCCTTTCTTCTAGTAATTTATATTCCATGGCACTTTTCATTTTCATTGAAACTAGAGGCAGAAAATAGACATCACTGAAAGGAGTTGAGTGAGGAAATTTCTCAAGTAGTGTAGTACTTTGGTAGAAAGTTATTTAAATAGAAATTAGATGAAAATTATGTACAATTATTATATGTAAGGAGTTTTTACACTCACAATCAATTTTAACCGTCAGTTGATTTATAAAAGTTTGACTTTTATCATAATTACTTCTAAAACGACCAACACGATTGATTGTGATTTGTGGTGTGCCAGTGTCAACAATGTAGTGTATGAAAACTAAACTTAATATTCTGTCAAAAAAAAAAACTAAACTTAATAATTATTATTTGAATTATTTTCAGGATTATGGTCTCCAATTATTTCTATTCCGCACACCATATTTGGTAGACCTTGACCGTGAGAACATTGGGCGTGTTCTAAAGTTGGACTCAATAAAGAGTGGTAATGCATGGAGAGGGATGGATGTATTGGTTTTCAACACATGGCATTGGTGGACCCACACTGGAAATGCACAACCGTAGGATCTATATTTAACACCATGATCATAATCAATTCTGTTATTAAGGAGGTGATTAATTAGTTGTTGTTTTTTTGACATTTGAATTCAGATGGGATTATATTCAAGAGGGTGGCAAGGTGTACAAAGACATGAACCGTTTCATTGCGTTCTACAAAGGTTTGACAACTTGGGCTAGATGGGTTAACATCAATGTAAATCCAGCTCAAACCAAGGTCTTCTTTTTAGGAATTTCTCCTGTGCATTACGAGTAAGTTGTTCTATCTACTTCAATTTAATATATTATTTAGTGCGTGTTTGAATTCACAATGTTTTTTTACAGAATTACGGTGTACTATCGTGATTTTAAATTTCAGTAGAATCAGGGTCACTTTACTTTTGTTACACTTGCTATGACTTCAAACTTGCACAAAGTATGTGAGGTTTTACAAAAGAAATCATTAGAATGTTTGGTATCGCAGCCAGTATGCCAAAATCTATGTGTGCCACCACGAATTTGTAAAATTTAGAGTGTAGTTTTTGCAAAACCACCATAGTACAAAACATTCACTAAACTTGCTTATGTCAAAAGTAATTTTCGTAAAAGTGATAAAAAAAAGTTATTCTTTTTGTTACTAAATTGTGTGCCAATTACTAGACTAAGTTTTATCAACTATATTTATAATGGTGTATGATATTTGGTAAATTAGGGGGAGAGATTGGAATCAACCAGCAAAATCATGCATGAGAGAAACACAACCATTCTTTGGTTTGAAGTACCCAGCAGGAACACCAATGGCTTGGGTAATAGTGAATAAAGTATTGAGCAGATTAAAGAAGCCAGTGTATTTTCTAGATGTGACAACATTGTCACAGTACAGAAAAGATGCACATCCAGAAGGGTATAGTAGTGTTATGCCAACAGATTGTAGTCATTGGTGTCTTCCAGGACTTCCTGATACTTGGAATGTTCTTCTTCATGCAGCTCTCTTTGGTTGA
Protein sequence

>MS.gene028817.t1

MGFLLPTLFLLLLFSSHQTKSLEFNSNTTATTTISSSSNERKLAGRCNWFRGKWVYDPSYPLYDPSSCPFIDPQFNCQKYGRPDTQYQKYRWQPFTCSIPRFNALDFLAKYRGKKIMFVGDSLSLNQFNSLACMIHSWVPKTRYSFSKQSAISTITFQDYGLQLFLFRTPYLVDLDRENIGRVLKLDSIKSGNAWRGMDVLVFNTWHWWTHTGNAQPWDYIQEGGKVYKDMNRFIAFYKGLTTWARWVNINVNPAQTKVFFLGISPVHYEGRDWNQPAKSCMRETQPFFGLKYPAGTPMAWVIVNKVLSRLKKPVYFLDVTTLSQYRKDAHPEGYSSVMPTDCSHWCLPGLPDTWNVLLHAALFG