AlfalfaGEDB | MS.gene22010

M. sativa cultivar XinJiangDaYe / MS.gene22010

KEGG: -
GO: -
PFAM: PF13839.9 PF14416.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22010.t1	XP_003599941.1	96.3	326	12	0	2	327	26	351	3.20E-193	684.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22010.t1	Q6DR10	62.8	323	117	3	7	326	43	365	2.4e-125	449.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22010.t1	G7J195	96.3	326	12	0	2	327	26	351	2.3e-193	684.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene22010	0.807714	4.42E-50	-1.69E-46
MS.gene049222	MS.gene22010	0.813637	2.31E-51	-1.69E-46
MS.gene049805	MS.gene22010	0.818812	1.61E-52	-1.69E-46
MS.gene050747	MS.gene22010	0.814647	1.38E-51	-1.69E-46
MS.gene051167	MS.gene22010	-0.841738	3.96E-58	-1.69E-46
MS.gene051666	MS.gene22010	0.802691	4.98E-49	-1.69E-46
MS.gene051694	MS.gene22010	0.80105	1.08E-48	-1.69E-46
MS.gene052506	MS.gene22010	0.814282	1.67E-51	-1.69E-46
MS.gene052820	MS.gene22010	0.813417	2.59E-51	-1.69E-46
MS.gene053436	MS.gene22010	0.807766	4.31E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene031625	MS.gene22010	PPI
MS.gene073606	MS.gene22010	PPI
MS.gene22010	MS.gene028817	PPI
MS.gene22010	MS.gene54859	PPI
MS.gene22010	MS.gene029318	PPI
MS.gene22010	MS.gene040643	PPI
MS.gene22010	MS.gene043504	PPI
MS.gene22010	MS.gene065049	PPI
MS.gene22010	MS.gene006674	PPI
MS.gene22010	MS.gene76221	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22010.t1	MTR_3g049330	96.319	326	12	0	2	327	26	351	0.0	663
MS.gene22010.t1	MTR_5g034810	68.196	327	100	3	2	327	30	353	2.17e-167	470
MS.gene22010.t1	MTR_2g073510	65.723	318	108	1	7	323	33	350	2.76e-161	454
MS.gene22010.t1	MTR_2g015720	59.317	322	128	3	5	326	40	358	1.77e-141	404
MS.gene22010.t1	MTR_4g079700	55.937	320	138	2	7	326	47	363	1.77e-135	389
MS.gene22010.t1	MTR_4g088030	56.037	323	140	2	5	327	31	351	9.05e-135	387
MS.gene22010.t1	MTR_4g087730	55.728	323	141	2	5	327	43	363	4.74e-132	380
MS.gene22010.t1	MTR_2g091175	54.517	321	143	2	7	327	50	367	5.80e-132	380
MS.gene22010.t1	MTR_3g021060	54.375	320	144	1	7	326	46	363	1.08e-130	377
MS.gene22010.t1	MTR_3g035830	52.812	320	149	1	7	326	31	348	1.63e-126	366

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22010.t1	AT2G30900	62.848	323	117	3	7	326	43	365	3.56e-155	439
MS.gene22010.t1	AT3G14850	57.798	327	135	3	3	327	30	355	6.44e-143	408
MS.gene22010.t1	AT1G29050	57.585	323	133	3	5	326	59	378	2.93e-141	404
MS.gene22010.t1	AT2G34070	57.407	324	133	4	5	326	63	383	4.24e-140	402
MS.gene22010.t1	AT2G42570	55.215	326	144	2	2	327	42	365	1.43e-136	392
MS.gene22010.t1	AT2G31110	53.681	326	149	2	1	326	39	362	1.09e-134	387
MS.gene22010.t1	AT1G78710	54.489	323	142	4	7	327	38	357	1.28e-130	377
MS.gene22010.t1	AT5G58600	50.442	339	153	6	4	327	63	401	1.75e-114	337
MS.gene22010.t1	AT2G30900	65.753	219	73	2	7	223	43	261	5.84e-107	313
MS.gene22010.t1	AT3G14850	57.312	253	105	3	77	327	1	252	4.66e-104	305

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Find 80 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGATTCCAAGTATC+AGG	0.342301	3.3:+40649954	None:intergenic
AAAGCCAACTGTGCTGGAAC+TGG	0.426171	3.3:+40650125	None:intergenic
AACATTGTCATCAACCCATA+TGG	0.486550	3.3:+40650821	None:intergenic
AACTACACCTTAGTGAGGAT+TGG	0.516648	3.3:-40652415	MS.gene22010:CDS
AACTGGACCTCCTGGATACA+TGG	0.456004	3.3:+40650142	None:intergenic
AAGCTAACTACACCTTAGTG+AGG	0.700717	3.3:-40652420	MS.gene22010:CDS
AATACTTACTTTAGATGATC+TGG	0.386982	3.3:+40650759	None:intergenic
AATTCTATCTCAAGTATAGA+TGG	0.438438	3.3:-40655043	MS.gene22010:CDS
AATTTATCATACAGATTCAA+TGG	0.435675	3.3:-40652553	MS.gene22010:intron
ACAACAATGTTTGCAAAGAG+TGG	0.534770	3.3:-40655182	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCCCACATTATTACAAA+TGG	-	chr3.3:40654074-40654093	MS.gene22010:intron	30.0%
ACAAAAGGATCCTTTCAATA+TGG	-	chr3.3:40654620-40654639	MS.gene22010:intron	30.0%
ACAATTAAATGTGGAGAAGT+GGG	-	chr3.3:40651160-40651179	MS.gene22010:CDS	30.0%
AGAAACATAAATTCGACATC+AGG	-	chr3.3:40653527-40653546	MS.gene22010:intron	30.0%
AGAACTCACACAATTAAATG+TGG	-	chr3.3:40651151-40651170	MS.gene22010:intron	30.0%
AGATTTATTTAGGTGGCTAT+TGG	+	chr3.3:40651577-40651596	None:intergenic	30.0%
ATCAATATTGTGTATGCAGA+TGG	-	chr3.3:40654188-40654207	MS.gene22010:intron	30.0%
ATCAATTCCTTTCCAATTTC+TGG	+	chr3.3:40653909-40653928	None:intergenic	30.0%
ATGAACCTTCGTTCTTAATT+TGG	-	chr3.3:40651256-40651275	MS.gene22010:CDS	30.0%
ATGGTGAAGATTTCTTAAGA+AGG	-	chr3.3:40652577-40652596	MS.gene22010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	40649935	40655198	40649935	ID=MS.gene22010
chr3.3	mRNA	40649935	40655198	40649935	ID=MS.gene22010.t1;Parent=MS.gene22010
chr3.3	exon	40655017	40655198	40655017	ID=MS.gene22010.t1.exon1;Parent=MS.gene22010.t1
chr3.3	CDS	40655017	40655198	40655017	ID=cds.MS.gene22010.t1;Parent=MS.gene22010.t1
chr3.3	exon	40652390	40652561	40652390	ID=MS.gene22010.t1.exon2;Parent=MS.gene22010.t1
chr3.3	CDS	40652390	40652561	40652390	ID=cds.MS.gene22010.t1;Parent=MS.gene22010.t1
chr3.3	exon	40651152	40651327	40651152	ID=MS.gene22010.t1.exon3;Parent=MS.gene22010.t1
chr3.3	CDS	40651152	40651327	40651152	ID=cds.MS.gene22010.t1;Parent=MS.gene22010.t1
chr3.3	exon	40650768	40650926	40650768	ID=MS.gene22010.t1.exon4;Parent=MS.gene22010.t1
chr3.3	CDS	40650768	40650926	40650768	ID=cds.MS.gene22010.t1;Parent=MS.gene22010.t1
chr3.3	exon	40649935	40650229	40649935	ID=MS.gene22010.t1.exon5;Parent=MS.gene22010.t1
chr3.3	CDS	40649935	40650229	40649935	ID=cds.MS.gene22010.t1;Parent=MS.gene22010.t1

Gene Sequence

>MS.gene22010

ATGTTTGCAAAGAGTGGTTGTGATTTGTTTCAAGGGAAATGGGTATATGATGAATCATATCCTCTCTATCAAACCTCACAGTGTCCCTTTATAGAAAAAGAATTTGATTGTCAGAATAATGGTAGACCAGATAAATTCTATCTCAAGTATAGATGGCAGCCCACAAATTGTAACTTACCAAGGTACACACATTTCTTCTAGTTTATGTGATATATATTTTCAACTTTGTTATTTTATTTGATATCGTTAAAAGACATACTTAAGGTATGAATCGTGATTAGGATCGGGTTGTAGTGCTTGATATTGCAGAGAATTGTGGTCAAATGTCCTCGATACAACCTCAATCACGATGGTGGAGACATAAAATGTTTCATGTCACCATCTAAATTGTGGTGGCCAAATTTTTTAAAACGGACCATTGTAAAGATGCATGATTTGAGCTGGTAATAAAAATAGTTCTAAATTTGTAACATAAAAAAATTAATAACAGTTCTAAATTGGTCTCCAACATTAATATTTCCTAGTATTCCTAAAAAAAAACTTCCTGGTATAATTGCATATGTGGAAAGTTTATAATCATTGTGATATTTTACGTTTCTTTTTGCATTACTTCCACAAAATTAGTTTACTGACATATAATAGGCCTAGCAGTTACTTAAATCTATTTACTCTGAAGGTGTTTTTTGTAAAGATTTCTGATATGGAAGAAAGAAAAAAAAAACACACACACACAATGCAAACCAAGTAATAGATGATGCTCTTTGTCTTGAAAATGATTTCATTCCCGCCTTTTTTACCCCCTAACTTTAAAAAAAAATTTGTGGGACCAAAACCATGTGATATTTTACTTAGTGAAATTGTCTCTAATGATTTTTTTTAGGAAGTTGTCTCTATTGATGTTACCTTATTATACTTCATTTTTGTTTATGAAATTAAAACCATAGGGAAAAAACAAAAAAAAATAGGAAATTAGAATCAAGAAGCAAGAAAAGAATTTGCTGTTGAATTAAATTTGACATATGATGAAGATTTCACAATCTATCATGGTCTAGTTATTGACCTCTCATCAGAGTTGTGTGCAATCACAACTCAGTGATTTCATGTAGTCATACTGACTAGATTTCAAGCTTGATCTTTTAATCTAAAGGAAATAAAAATTAGTTTTAAAATATAGAGCCTTCGATTTTTATTTTTTTTGTCAAGTAGCCTAGTGGTTAGAACTCACACAATTAAATGTGGAGAAGTGGGGTGTCCGGGGTTCAAACACCGGCCCTTGCATATAATATGAAATATCCCTACCAACTGAGTTAAACTCACGGGGATGAACCTTCGTTCTTAATTTGGGAAGGAACTGTAATTGTTTATTTAGACAATTAAAAAGTGTATCACTTTTCTCTCTTAGTATGTTTATTTTAAAGAGCCAAAATAACAAAACCGTTATAAACTCACACACACATGTGGAGTTGCCATTATTCCAGGGAACCTTAATCAATCATAGTGTATGCTCTAACAATTGAGCTAGAACTTATCAACCTCTTACTATTAATATTACTATGCCAAAATAGTGATTATATATTTTTAAGTTATTTCAATAGACGTGTATGGAAAGAACTACTCTTGGTAATGGACCAATGGTTAGCCAATAGCCACCTAAATAAATCTCTATTATCTCGAGAGATAAGTATGCTTTCATTTTCGGCTGTCCCATGGCCTATAGCTACCAGCAAAAAGATACTTTTAAATTTAGGATAATTTAAAATTTCTATACTACCATTTGACAAGTATATATTTGTGGGTTAAAAAGTTTATCGATCACAAAATAAAGGGGTACAAGTAAGAATAAAATAAATAAACAACTTCTAACTTGGGAAAAGGTTGGAGATAGGTATGTTTTCTCTTAATAGCTTTCCCTAGTTAACATTACTCAACAATCGTTTTTCATCTTACCAAAAAAAATAAAAAGTGTAAGGATTGTAATTAGTTAACCTCCAATTATCATCAAGACACTTTGTTGCGTACATGCAAAGTTCCAAATCATTACTTTGTTTGCTAGGCTGTCTTTTTAAGGTGACGTACTCCAAATAATTATTCAACAAACAATCATTTTATTCTTGTTCCTTAAATGTATCAAAATTACAAATACATACATAAATGTATTTTGTAAGTGATTTTGATAATCAAATAATGTTTTTAGATAATTAGTTTAGTCTTTGAATGTGTTTTTTGTTGGTTGATTTAGTCTATAAAATTAGGGATTATTTTTTAATTTTTATATATTTAGAGACTATAGTGTTGTAAGCGTCAACACTCACACATTCAAATATCGAAATGGCACCCAATATCAATTAAAGGTTGTTAGGATTTTGTGTGTGTGTGTATATATATACACACATACATTCATACTTGAACCACCATAGGATGTATGTGTGGATAAGTTCTTTTTTTTTTTTTTTTGGAAATATGTGTGGATAATTTGTTATTGAGATGATGCTGTTGTGAAGTTGTTTTCAATCATTTTGTTTTCAAATAAGATCACATGCCATATTAGATCCGAACAAAATTACCATTTAATGATGATTAAGGCCATGCAGTTTGATTTGGTCCACTTGATATTTTTTAATGAAATTTATCATACAGATTCAATGGTGAAGATTTCTTAAGAAGGCATAGAGGGAAAAGTATTTTGTTTGTTGGGGACTCTTTGAGTTTGAATCAATGGCAATCACTCACTTGCATGCTCCACATAGCTGTACCACAAGCTAACTACACCTTAGTGAGGATTGGTGATCTCTCCATTTTCACCTTCACTGTTAGATCTCTATCCTATAACATTTTTTCATTTCTTATTTCCTTCCAATTCTGTCTCATTATCATAATTTAAATCTATCAAAAATACTTTTTTCAAATCAACAATATTCACCCTCAATTATTTGAGCTAGCTCATGGTGTTATCTATTTTACAAATCAACATCACTTTTTTTTTTCGGTTACAAAATCAACATCGCTTTAACATCATAAAACTACTTGTTATTTAACGGTCACACATAAAATGAAAAATAGATGGAGGCATATAAAATTTCAAGATATTTTCCACACATCAAACCATGAGACAACTTGTTATCCTAATAAATGTGGATCAAATGAATATGGTCTCTTTTACATGGAAATAGTCTTGATTTACCAATGTATTTAATTGTTTCTTTTTTATAAAACAAAATTGGAGAAGAAGAAATCATTATTAATTAAGATGGCATGAATGATCATTTTACAATTATCCCGAGAAGATTTGTCCAATAACATTGTAGTGCCAAGTTATTATTAAATAAGTTATTTTTTCTTCTGAAAATATAGCGAATTTTGATTTTAGTCTCTAAGAATAAAAAGGAAATCGATGTTTTCACTCTCAAAAAAATTTGTTTCGATTTTCGTCCTATTGAACATAATTTTAACATTTTCTTGAACATAATAATAATATGGACATACATGAGTCGGACATTATAAATGAACATAAATTGAACATATCTTGAACATGAAAGAGTCATATAACCTTGACATAAATAGAAACATAAATTCTTTGTACCAAAAAAAAAATAGAAACATAAATTCGACATCAGGGACAAAAAAATGAAACAATTATTTTGAAGAATAAAAACCTCTCATTTTTATTTTTAGGGACTAAAATCAAAATTCACTATATATATTTTTAAGGAGGAAAAACTTATTAAACCCTAAATTAAAACTTCAACCAGAGACTTTTTCAAATAAAATCTTAACTTGGAGTTCATTTATTGGTGAAGTAGCACATGTAACTTTTTTTTTATTGATGAAAAATAGCACATAACTTATATCTTTTCTATGACATGATTTGCAGACTTATGGTGTTAAGGTGATGTTCTCACGCAATGCGCTTCTGGTGGACATTGTTAGTGAAAATATTGGTAGGGTCCTGAAATTAGACTCTATTCAATCTGCCAGAAATTGGAAAGGAATTGATGTGTTGATATTTGATTCTTGGCATTGGTGGCTTCACACAGGAAGAAAACAACCGTAATTAAAATCCATACACATTCTTCATTTGTTTGTATATATCTTATGGCATAGACAAATATATCTTATTATACCCTCACATTTGGTCCCCTAACTCCCACATTATTACAAATGGACAAAAATACTTATATATTTTTTGGAAAAAATGTTGATGTGAGAGGACCAGTTGCAGAATATGGAAAACATCTTTCTAATGCGTACTTTGTATCAATATTGTGTATGCAGATGGGATTTCATTCAAGAAGGGAATAACACATTCAGAGATATGGATCGTTTGGTTGCATATGAGAAAGCATTGAAAACATGGGCCATATGGGTTGATGACAATGTTGATATTACCAAAACAAAGGTCTTTTTCCAAGGAATCTCTCCAGATCATCTAAAGTAAGTATTTGTTTCTATTGAAGTGATTATGATGAGATGAAAATTGCATAATTAGGATGTAAATTTCTTTAGGGCAATGCCATTTTGAAAGTAATTTAATGAAAATACTCAATTATGCATACTTTTTTTTGTAGTAAATTATGAATACTTTCAAGAGTACTAGAAAAACCACTTTTAAATTTTGTACATGCAAAACCTAATTTGAAGTTTTTTTTTTTTTTAATTTCATGCCTATTTATTTTATTTTTTTTGGGACAAAAGGATCCTTTCAATATGGGCTCTACATTTGACATTCTTGCTTAAAAAAAAAGAAAAGAAATATTTTACAAGTTTTTTAAGTTAATATTTTGTTATGAACTTAAGATAGATCACATACCCATTGTTGTACTTTTACCATTAAAAGGAGATAACATTTTAATAAATTTTTTCCTTCAAAAAAAAAAAAAATTTGTTACAAAATCATATAAATATTAACAAACAAAATTAACATATAATTATGTAGAAGTGTAATTATTATTTTTTTTCAAAATATTTCCAGCTCAAGGCAATGGGGAGACCCAACAGCAAACTTTTGTGAAGGACAAGAAAAACCATTATCAGGATCCATGTATCCAGGAGGTCCAGTTCCAGCACAGTTGGCTTTAGAGAGAGTTATAAGAGCCATGAAAAAGCCTATATATTTGCTTGACATTACCACTTTATCACAGCTGAGAAAAGATGGTCACCCATCAGTTTATGGACATGGAGGACATAGGGACATGGATTGCAGCCATTGGTGTCTAGCTGGTGTTCCTGATACTTGGAATCAGCTTTTATATGCAAGTCTAATTTAA

Protein sequence

>MS.gene22010.t1

MFAKSGCDLFQGKWVYDESYPLYQTSQCPFIEKEFDCQNNGRPDKFYLKYRWQPTNCNLPRFNGEDFLRRHRGKSILFVGDSLSLNQWQSLTCMLHIAVPQANYTLVRIGDLSIFTFTTYGVKVMFSRNALLVDIVSENIGRVLKLDSIQSARNWKGIDVLIFDSWHWWLHTGRKQPWDFIQEGNNTFRDMDRLVAYEKALKTWAIWVDDNVDITKTKVFFQGISPDHLNSRQWGDPTANFCEGQEKPLSGSMYPGGPVPAQLALERVIRAMKKPIYLLDITTLSQLRKDGHPSVYGHGGHRDMDCSHWCLAGVPDTWNQLLYASLI