Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030443.t1 | XP_013446997.1 | 98 | 350 | 7 | 0 | 1 | 350 | 1 | 350 | 5.80E-201 | 709.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030443.t1 | B0M3E8 | 91.7 | 350 | 29 | 0 | 1 | 350 | 1 | 350 | 2.5e-192 | 672.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030443.t1 | B7FK31 | 98.0 | 350 | 7 | 0 | 1 | 350 | 1 | 350 | 4.2e-201 | 709.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22302 | MS.gene030443 | PPI |
| MS.gene069594 | MS.gene030443 | PPI |
| MS.gene22301 | MS.gene030443 | PPI |
| MS.gene030443 | MS.gene31166 | PPI |
| MS.gene048934 | MS.gene030443 | PPI |
| MS.gene030443 | MS.gene052130 | PPI |
| MS.gene030443 | MS.gene06078 | PPI |
| MS.gene030443 | MS.gene30948 | PPI |
| MS.gene021092 | MS.gene030443 | PPI |
| MS.gene024690 | MS.gene030443 | PPI |
| MS.gene030443 | MS.gene024691 | PPI |
| MS.gene61100 | MS.gene030443 | PPI |
| MS.gene030443 | MS.gene45481 | PPI |
| MS.gene21669 | MS.gene030443 | PPI |
| MS.gene030443 | MS.gene41197 | PPI |
| MS.gene55805 | MS.gene030443 | PPI |
| MS.gene030443 | MS.gene21670 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030443.t1 | MTR_8g096880 | 98.000 | 350 | 7 | 0 | 1 | 350 | 1 | 350 | 0.0 | 718 |
| MS.gene030443.t1 | MTR_8g096880 | 97.833 | 323 | 7 | 0 | 1 | 323 | 1 | 323 | 0.0 | 657 |
| MS.gene030443.t1 | MTR_4g134490 | 79.598 | 348 | 71 | 0 | 3 | 350 | 22 | 369 | 0.0 | 597 |
| MS.gene030443.t1 | MTR_8g096880 | 97.279 | 294 | 8 | 0 | 1 | 294 | 1 | 294 | 0.0 | 592 |
| MS.gene030443.t1 | MTR_4g134490 | 78.249 | 354 | 71 | 1 | 3 | 350 | 22 | 375 | 0.0 | 590 |
| MS.gene030443.t1 | MTR_5g009170 | 68.000 | 350 | 109 | 3 | 1 | 350 | 42 | 388 | 2.16e-176 | 495 |
| MS.gene030443.t1 | MTR_8g099535 | 67.930 | 343 | 108 | 2 | 4 | 346 | 2 | 342 | 1.20e-174 | 489 |
| MS.gene030443.t1 | MTR_5g009160 | 65.889 | 343 | 115 | 2 | 4 | 346 | 2 | 342 | 6.74e-169 | 474 |
| MS.gene030443.t1 | MTR_5g009160 | 69.145 | 269 | 82 | 1 | 78 | 346 | 12 | 279 | 3.68e-139 | 396 |
| MS.gene030443.t1 | MTR_5g009160 | 68.664 | 217 | 67 | 1 | 78 | 294 | 12 | 227 | 3.52e-107 | 313 |
| MS.gene030443.t1 | MTR_2g032100 | 40.571 | 350 | 184 | 8 | 8 | 346 | 73 | 409 | 9.65e-82 | 254 |
| MS.gene030443.t1 | MTR_8g089180 | 39.143 | 350 | 189 | 8 | 8 | 346 | 73 | 409 | 2.45e-78 | 246 |
| MS.gene030443.t1 | MTR_8g089180 | 39.143 | 350 | 189 | 8 | 8 | 346 | 73 | 409 | 2.45e-78 | 246 |
| MS.gene030443.t1 | MTR_2g032100 | 41.026 | 195 | 112 | 3 | 8 | 202 | 73 | 264 | 6.28e-45 | 156 |
| MS.gene030443.t1 | MTR_1g009600 | 27.350 | 351 | 214 | 13 | 6 | 345 | 5 | 325 | 2.59e-22 | 98.6 |
| MS.gene030443.t1 | MTR_4g024600 | 28.916 | 332 | 198 | 12 | 8 | 323 | 103 | 412 | 1.04e-21 | 95.9 |
| MS.gene030443.t1 | MTR_5g011940 | 28.280 | 343 | 216 | 11 | 8 | 338 | 92 | 416 | 2.21e-21 | 94.7 |
| MS.gene030443.t1 | MTR_2g073240 | 25.843 | 356 | 217 | 14 | 4 | 345 | 17 | 339 | 4.78e-21 | 94.7 |
| MS.gene030443.t1 | MTR_8g099285 | 74.545 | 55 | 13 | 1 | 238 | 292 | 3 | 56 | 1.61e-20 | 84.3 |
| MS.gene030443.t1 | MTR_4g102270 | 27.500 | 360 | 207 | 11 | 3 | 338 | 90 | 419 | 5.08e-20 | 90.9 |
| MS.gene030443.t1 | MTR_3g084090 | 28.080 | 349 | 209 | 14 | 8 | 338 | 101 | 425 | 1.58e-19 | 89.7 |
| MS.gene030443.t1 | MTR_0354s0040 | 26.912 | 353 | 214 | 13 | 8 | 341 | 84 | 411 | 1.23e-18 | 86.7 |
| MS.gene030443.t1 | MTR_0034s0060 | 24.719 | 356 | 221 | 14 | 4 | 345 | 135 | 457 | 3.74e-18 | 86.3 |
| MS.gene030443.t1 | MTR_4g129820 | 26.149 | 348 | 217 | 12 | 8 | 338 | 97 | 421 | 1.93e-17 | 83.2 |
| MS.gene030443.t1 | MTR_4g120030 | 26.126 | 333 | 194 | 15 | 6 | 330 | 111 | 399 | 2.34e-13 | 71.2 |
| MS.gene030443.t1 | MTR_4g063600 | 25.526 | 333 | 206 | 14 | 4 | 330 | 30 | 326 | 4.76e-13 | 69.7 |
| MS.gene030443.t1 | MTR_2g096660 | 24.924 | 329 | 205 | 13 | 3 | 325 | 35 | 327 | 8.59e-13 | 68.9 |
| MS.gene030443.t1 | MTR_1g088480 | 25.231 | 325 | 195 | 14 | 7 | 325 | 119 | 401 | 7.85e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030443.t1 | AT1G12780 | 86.167 | 347 | 48 | 0 | 3 | 349 | 4 | 350 | 0.0 | 635 |
| MS.gene030443.t1 | AT1G63180 | 83.621 | 348 | 57 | 0 | 3 | 350 | 4 | 351 | 0.0 | 622 |
| MS.gene030443.t1 | AT1G63180 | 84.138 | 290 | 46 | 0 | 3 | 292 | 4 | 293 | 0.0 | 517 |
| MS.gene030443.t1 | AT4G10960 | 67.836 | 342 | 108 | 2 | 5 | 346 | 3 | 342 | 9.44e-177 | 494 |
| MS.gene030443.t1 | AT1G64440 | 67.347 | 343 | 110 | 2 | 8 | 350 | 5 | 345 | 6.76e-175 | 489 |
| MS.gene030443.t1 | AT4G23920 | 66.962 | 339 | 110 | 2 | 5 | 343 | 2 | 338 | 3.87e-171 | 480 |
| MS.gene030443.t1 | AT5G44480 | 38.746 | 351 | 191 | 8 | 8 | 347 | 73 | 410 | 4.13e-79 | 248 |
| MS.gene030443.t1 | AT5G44480 | 38.746 | 351 | 191 | 8 | 8 | 347 | 73 | 410 | 4.13e-79 | 248 |
| MS.gene030443.t1 | AT5G44480 | 38.746 | 351 | 191 | 8 | 8 | 347 | 73 | 410 | 4.13e-79 | 248 |
| MS.gene030443.t1 | AT5G44480 | 38.746 | 351 | 191 | 8 | 8 | 347 | 97 | 434 | 9.65e-79 | 248 |
| MS.gene030443.t1 | AT4G20460 | 38.746 | 351 | 191 | 8 | 8 | 347 | 72 | 409 | 4.02e-78 | 245 |
| MS.gene030443.t1 | AT1G30620 | 38.571 | 350 | 191 | 8 | 8 | 346 | 72 | 408 | 4.87e-76 | 240 |
| MS.gene030443.t1 | AT1G30620 | 38.571 | 350 | 191 | 8 | 8 | 346 | 73 | 409 | 5.12e-76 | 240 |
| MS.gene030443.t1 | AT1G30620 | 38.571 | 350 | 191 | 8 | 8 | 346 | 73 | 409 | 5.12e-76 | 240 |
| MS.gene030443.t1 | AT1G30620 | 38.571 | 350 | 191 | 8 | 8 | 346 | 73 | 409 | 5.12e-76 | 240 |
| MS.gene030443.t1 | AT1G30620 | 38.571 | 350 | 191 | 8 | 8 | 346 | 73 | 409 | 5.12e-76 | 240 |
| MS.gene030443.t1 | AT2G34850 | 37.229 | 231 | 137 | 5 | 120 | 346 | 1 | 227 | 2.82e-43 | 150 |
| MS.gene030443.t1 | AT2G34850 | 37.229 | 231 | 137 | 5 | 120 | 346 | 1 | 227 | 2.82e-43 | 150 |
| MS.gene030443.t1 | AT2G34850 | 37.229 | 231 | 137 | 5 | 120 | 346 | 1 | 227 | 2.82e-43 | 150 |
| MS.gene030443.t1 | AT2G34850 | 37.229 | 231 | 137 | 5 | 120 | 346 | 1 | 227 | 2.82e-43 | 150 |
| MS.gene030443.t1 | AT1G30620 | 38.462 | 195 | 117 | 3 | 8 | 202 | 73 | 264 | 1.89e-41 | 147 |
| MS.gene030443.t1 | AT4G00110 | 27.168 | 346 | 216 | 12 | 8 | 338 | 93 | 417 | 2.46e-21 | 94.7 |
| MS.gene030443.t1 | AT3G23820 | 28.035 | 346 | 213 | 11 | 8 | 338 | 114 | 438 | 4.47e-21 | 94.4 |
| MS.gene030443.t1 | AT2G45310 | 27.586 | 348 | 212 | 13 | 8 | 338 | 99 | 423 | 4.52e-21 | 94.0 |
| MS.gene030443.t1 | AT1G02000 | 27.378 | 347 | 214 | 13 | 8 | 338 | 94 | 418 | 1.06e-20 | 93.2 |
| MS.gene030443.t1 | AT1G53500 | 26.271 | 354 | 214 | 14 | 6 | 345 | 9 | 329 | 2.48e-20 | 92.8 |
| MS.gene030443.t1 | AT4G12250 | 28.613 | 346 | 211 | 13 | 8 | 338 | 98 | 422 | 5.91e-19 | 87.8 |
| MS.gene030443.t1 | AT1G78570 | 25.352 | 355 | 220 | 13 | 4 | 345 | 5 | 327 | 1.99e-18 | 87.0 |
| MS.gene030443.t1 | AT4G30440 | 26.446 | 363 | 218 | 14 | 8 | 349 | 90 | 424 | 4.29e-17 | 82.4 |
| MS.gene030443.t1 | AT2G47650 | 25.680 | 331 | 201 | 14 | 7 | 330 | 122 | 414 | 2.40e-15 | 77.0 |
| MS.gene030443.t1 | AT3G53520 | 25.788 | 349 | 212 | 14 | 7 | 345 | 121 | 432 | 2.82e-15 | 77.0 |
| MS.gene030443.t1 | AT3G62830 | 25.680 | 331 | 201 | 14 | 7 | 330 | 120 | 412 | 2.96e-15 | 77.0 |
| MS.gene030443.t1 | AT3G62830 | 25.680 | 331 | 201 | 14 | 7 | 330 | 120 | 412 | 2.96e-15 | 77.0 |
| MS.gene030443.t1 | AT2G28760 | 24.925 | 333 | 208 | 14 | 4 | 330 | 29 | 325 | 7.69e-14 | 72.0 |
| MS.gene030443.t1 | AT2G28760 | 24.925 | 333 | 208 | 14 | 4 | 330 | 29 | 325 | 7.69e-14 | 72.0 |
| MS.gene030443.t1 | AT2G28760 | 24.925 | 333 | 208 | 14 | 4 | 330 | 29 | 325 | 7.69e-14 | 72.0 |
| MS.gene030443.t1 | AT2G28760 | 24.925 | 333 | 208 | 14 | 4 | 330 | 60 | 356 | 1.50e-13 | 71.6 |
| MS.gene030443.t1 | AT3G53520 | 25.788 | 349 | 210 | 15 | 7 | 345 | 121 | 430 | 2.05e-13 | 71.2 |
| MS.gene030443.t1 | AT2G47650 | 25.223 | 337 | 201 | 15 | 7 | 330 | 122 | 420 | 3.13e-13 | 70.9 |
| MS.gene030443.t1 | AT3G46440 | 24.324 | 333 | 210 | 14 | 4 | 330 | 27 | 323 | 1.10e-12 | 68.6 |
| MS.gene030443.t1 | AT3G46440 | 24.324 | 333 | 210 | 14 | 4 | 330 | 27 | 323 | 1.10e-12 | 68.6 |
| MS.gene030443.t1 | AT3G53520 | 26.124 | 356 | 191 | 18 | 7 | 330 | 121 | 436 | 1.47e-12 | 68.9 |
Find 102 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCATCTGCTACTGTTTA+TGG | 0.137115 | 4.4:+6689749 | MS.gene030443:CDS |
| ATATAAGGCATGAGATTATT+TGG | 0.206042 | 4.4:-6690175 | None:intergenic |
| CACCGGTGACCAGGATCTTT+TGG | 0.235861 | 4.4:-6688611 | None:intergenic |
| GGCCAAATATAATTGTAAAA+AGG | 0.261914 | 4.4:+6689048 | MS.gene030443:CDS |
| CATCTCCTCTACACCATATT+TGG | 0.270436 | 4.4:-6691448 | None:intergenic |
| TCTCAGAATTAAAGATGATT+TGG | 0.312137 | 4.4:+6688797 | MS.gene030443:CDS |
| ATTATCGAAATTATCAATAA+TGG | 0.318002 | 4.4:-6688694 | None:intergenic |
| TCAGAATCTCGATTTCACTA+TGG | 0.322494 | 4.4:+6688770 | MS.gene030443:CDS |
| TCTGCATTTGAGAAAGCTTC+TGG | 0.322524 | 4.4:+6690982 | MS.gene030443:CDS |
| CACCGAGTTTACCACTTTCA+TGG | 0.335121 | 4.4:-6690135 | None:intergenic |
| ACAGCTACTTGCTGTATATA+AGG | 0.342436 | 4.4:-6690190 | None:intergenic |
| TATAAGGCATGAGATTATTT+GGG | 0.365430 | 4.4:-6690174 | None:intergenic |
| TAATTTCGATAATTCTGTTA+TGG | 0.375036 | 4.4:+6688704 | MS.gene030443:CDS |
| TATCTCTTGCAATTTCTTCA+AGG | 0.375499 | 4.4:-6690051 | None:intergenic |
| GGTCCGGCCATAGGGATTCA+TGG | 0.376978 | 4.4:-6689816 | None:intergenic |
| CCACTTTCATGGGCTCCAAC+TGG | 0.384370 | 4.4:-6690124 | None:intergenic |
| TGTGCAGGGATCAGTGGAAC+TGG | 0.404339 | 4.4:+6691469 | MS.gene030443:CDS |
| TTACCTGAGCTCAATGTATA+TGG | 0.409586 | 4.4:+6690220 | MS.gene030443:CDS |
| ACTGCTTACAACTTGGGAAC+TGG | 0.414239 | 4.4:+6690931 | MS.gene030443:CDS |
| ACGGTGCTTCAGCTTCTTCA+AGG | 0.422997 | 4.4:+6688657 | MS.gene030443:CDS |
| TATCAATCTCTATGAAGTTA+TGG | 0.427157 | 4.4:+6689027 | MS.gene030443:CDS |
| AGTAAAATGATCTTCCATTC+TGG | 0.431084 | 4.4:-6690088 | None:intergenic |
| CTTCTTGGACACAACTTCAA+TGG | 0.436103 | 4.4:-6691140 | None:intergenic |
| ACCGGTGGTGCTGGTTTCAT+CGG | 0.443173 | 4.4:+6688627 | MS.gene030443:CDS |
| ATCCTGGTCACCGGTGGTGC+TGG | 0.444164 | 4.4:+6688618 | MS.gene030443:CDS |
| GAACAACCCATGGGGTTACT+CGG | 0.453711 | 4.4:+6691497 | MS.gene030443:CDS |
| AGTTACCTTGGTCCGGCCAT+AGG | 0.453772 | 4.4:-6689825 | None:intergenic |
| CAGAATCTCGATTTCACTAT+GGG | 0.461544 | 4.4:+6688771 | MS.gene030443:CDS |
| GAGATTATTTGGGATGCCCC+TGG | 0.467920 | 4.4:-6690164 | None:intergenic |
| TTCAAATAGCTGAGCCAGAA+TGG | 0.470897 | 4.4:+6690074 | MS.gene030443:CDS |
| TACAACTTGGGAACTGGCCG+TGG | 0.472074 | 4.4:+6690937 | MS.gene030443:CDS |
| ACCGAGTTTACCACTTTCAT+GGG | 0.472646 | 4.4:-6690134 | None:intergenic |
| CTGAGATACTTCAATCCAGT+TGG | 0.475700 | 4.4:+6690109 | MS.gene030443:CDS |
| AAGCTCAGAAAGAACTTGGC+TGG | 0.476588 | 4.4:+6691201 | MS.gene030443:CDS |
| TCCACACAGGGTATTGTGTC+AGG | 0.481381 | 4.4:-6689776 | None:intergenic |
| AACAACCCATGGGGTTACTC+GGG | 0.481728 | 4.4:+6691498 | MS.gene030443:CDS |
| TGGTACATCTGTGCTTGAAA+TGG | 0.482706 | 4.4:+6690957 | MS.gene030443:CDS |
| ATGGTGTAGAGGAGATGTGC+AGG | 0.488200 | 4.4:+6691454 | MS.gene030443:CDS |
| GTAAACTCGGTGAAGATCCC+AGG | 0.496299 | 4.4:+6690146 | MS.gene030443:CDS |
| GGGTGATAGTTACCTTGGTC+CGG | 0.503389 | 4.4:-6689832 | None:intergenic |
| AGGTTGTACTGCTTACAACT+TGG | 0.505052 | 4.4:+6690924 | MS.gene030443:intron |
| GACCGTGTTCGTGAACTTGT+TGG | 0.506832 | 4.4:+6688735 | MS.gene030443:CDS |
| GTTACCTTGGTCCGGCCATA+GGG | 0.507256 | 4.4:-6689824 | None:intergenic |
| AACCAGCACCACCGGTGACC+AGG | 0.507265 | 4.4:-6688620 | None:intergenic |
| TTCATCTTCCCAAAAGATCC+TGG | 0.508087 | 4.4:+6688602 | MS.gene030443:CDS |
| AAGTTGTGTCCAAGAAGGCC+GGG | 0.512692 | 4.4:+6691146 | MS.gene030443:CDS |
| TATATACAGCAAGTAGCTGT+TGG | 0.514025 | 4.4:+6690193 | MS.gene030443:CDS |
| GCCGATGAAACCAGCACCAC+CGG | 0.515032 | 4.4:-6688628 | None:intergenic |
| GGTTGTACTGCTTACAACTT+GGG | 0.516507 | 4.4:+6690925 | MS.gene030443:intron |
| GAAGTTGTGTCCAAGAAGGC+CGG | 0.517669 | 4.4:+6691145 | MS.gene030443:CDS |
| AGATTATTTGGGATGCCCCT+GGG | 0.522440 | 4.4:-6690163 | None:intergenic |
| CATTGAAGTTGTGTCCAAGA+AGG | 0.530821 | 4.4:+6691141 | MS.gene030443:CDS |
| GATAAAGCTCAGAAAGAACT+TGG | 0.533116 | 4.4:+6691197 | MS.gene030443:CDS |
| ATTGTTATCAAAATAGCGAC+GGG | 0.541549 | 4.4:-6688993 | None:intergenic |
| TCCCAAAAGATCCTGGTCAC+CGG | 0.541923 | 4.4:+6688609 | MS.gene030443:CDS |
| ATTTGCAACACTTTCACCAA+CGG | 0.543081 | 4.4:-6688969 | None:intergenic |
| TTTGCTGGATTAAAAGCCGT+TGG | 0.547808 | 4.4:+6688953 | MS.gene030443:CDS |
| TGACCATATACATTGAGCTC+AGG | 0.550727 | 4.4:-6690223 | None:intergenic |
| GGCTTCCCCGAGTAACCCCA+TGG | 0.558191 | 4.4:-6691504 | None:intergenic |
| AGGAGATGTGCAGGGATCAG+TGG | 0.560724 | 4.4:+6691463 | MS.gene030443:CDS |
| ATGGTCATGATTATCCTACC+AGG | 0.562194 | 4.4:+6690239 | MS.gene030443:CDS |
| TGGTTTCATCGGCACTCACA+CGG | 0.567720 | 4.4:+6688638 | MS.gene030443:CDS |
| AAGCCATGAATCCCTATGGC+CGG | 0.576086 | 4.4:+6689813 | MS.gene030443:CDS |
| TTACAAGCCATGAATCCCTA+TGG | 0.577950 | 4.4:+6689809 | MS.gene030443:CDS |
| CCAGTTGGAGCCCATGAAAG+TGG | 0.581440 | 4.4:+6690124 | MS.gene030443:CDS |
| CATGATTATCCTACCAGGGA+TGG | 0.584552 | 4.4:+6690244 | MS.gene030443:CDS |
| CGTTGCGAAAAGCTTTCTCA+CGG | 0.596627 | 4.4:-6690702 | None:intergenic |
| TCGGGACTATATCCATGTGA+TGG | 0.600840 | 4.4:+6690655 | MS.gene030443:CDS |
| AGTTGTGTCCAAGAAGGCCG+GGG | 0.600896 | 4.4:+6691147 | MS.gene030443:CDS |
| TAATTCTGTTATGGAAGCTG+TGG | 0.603301 | 4.4:+6688713 | MS.gene030443:CDS |
| GCCCATGAAAGTGGTAAACT+CGG | 0.607833 | 4.4:+6690133 | MS.gene030443:CDS |
| CAGGGCCAAATATGGTGTAG+AGG | 0.615440 | 4.4:+6691443 | MS.gene030443:intron |
| AAGTACCGCAGAGCCATCCC+TGG | 0.615766 | 4.4:-6690257 | None:intergenic |
| TCGAGATTCTGAGAAAGTTG+AGG | 0.615843 | 4.4:-6688759 | None:intergenic |
| GATTGTTATCAAAATAGCGA+CGG | 0.616877 | 4.4:-6688994 | None:intergenic |
| TAAACCTCAGTAGCATCCCC+CGG | 0.617677 | 4.4:-6691164 | None:intergenic |
| GTGCAGGGATCAGTGGAACT+GGG | 0.619387 | 4.4:+6691470 | MS.gene030443:CDS |
| GTGCTTCAGCTTCTTCAAGG+TGG | 0.623980 | 4.4:+6688660 | MS.gene030443:CDS |
| ACTGGGCTAAGAACAACCCA+TGG | 0.628147 | 4.4:+6691487 | MS.gene030443:CDS |
| TAAACTCGGTGAAGATCCCA+GGG | 0.631953 | 4.4:+6690147 | MS.gene030443:CDS |
| CAAAAGATCCTGGTCACCGG+TGG | 0.634217 | 4.4:+6688612 | MS.gene030443:CDS |
| CATGTGATGGACTTAGCAGA+TGG | 0.636104 | 4.4:+6690668 | MS.gene030443:CDS |
| ACCTGACACAATACCCTGTG+TGG | 0.637616 | 4.4:+6689775 | MS.gene030443:CDS |
| CTGGGCTAAGAACAACCCAT+GGG | 0.638108 | 4.4:+6691488 | MS.gene030443:CDS |
| ATTTGAGAAAGCTTCTGGCA+AGG | 0.639603 | 4.4:+6690987 | MS.gene030443:CDS |
| TAACTTGAAATCCTCCACAC+AGG | 0.643478 | 4.4:-6689789 | None:intergenic |
| GAATCCCTATGGCCGGACCA+AGG | 0.648006 | 4.4:+6689820 | MS.gene030443:CDS |
| TGGTCATGATTATCCTACCA+GGG | 0.649761 | 4.4:+6690240 | MS.gene030443:CDS |
| AACTTGAAATCCTCCACACA+GGG | 0.650612 | 4.4:-6689788 | None:intergenic |
| GACCAACAAGTTCACGAACA+CGG | 0.652988 | 4.4:-6688737 | None:intergenic |
| TCCTACCAGGGATGGCTCTG+CGG | 0.654103 | 4.4:+6690252 | MS.gene030443:CDS |
| CATCTGCTAAGTCCATCACA+TGG | 0.655053 | 4.4:-6690667 | None:intergenic |
| TGGTGTAGAGGAGATGTGCA+GGG | 0.663717 | 4.4:+6691455 | MS.gene030443:CDS |
| ACCGCAGAGCCATCCCTGGT+AGG | 0.669597 | 4.4:-6690253 | None:intergenic |
| TGACACAATACCCTGTGTGG+AGG | 0.670305 | 4.4:+6689778 | MS.gene030443:CDS |
| ACAACCCATGGGGTTACTCG+GGG | 0.677702 | 4.4:+6691499 | MS.gene030443:CDS |
| GCTTCCCCGAGTAACCCCAT+GGG | 0.688095 | 4.4:-6691503 | None:intergenic |
| GTTGTGTCCAAGAAGGCCGG+GGG | 0.716927 | 4.4:+6691148 | MS.gene030443:CDS |
| TTTCAAGCACAGATGTACCA+CGG | 0.723008 | 4.4:-6690954 | None:intergenic |
| TTGTTATCAAAATAGCGACG+GGG | 0.756243 | 4.4:-6688992 | None:intergenic |
| TGGGCTAAGAACAACCCATG+GGG | 0.757527 | 4.4:+6691489 | MS.gene030443:CDS |
| AAACTCGGTGAAGATCCCAG+GGG | 0.837560 | 4.4:+6690148 | MS.gene030443:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTGGTTATAAAATTAA+AGG | + | chr4.4:6690377-6690396 | MS.gene030443:intron | 10.0% |
| !!! | AATTTAAGATTTATATTTCA+CGG | - | chr4.4:6690428-6690447 | None:intergenic | 10.0% |
| !!! | ATTTAACTTTATTTGATTTT+TGG | + | chr4.4:6689340-6689359 | MS.gene030443:intron | 10.0% |
| !! | ATTATCGAAATTATCAATAA+TGG | - | chr4.4:6688697-6688716 | None:intergenic | 15.0% |
| !! | TTCTTAAATAAAATAAGGTT+CGG | + | chr4.4:6690636-6690655 | MS.gene030443:intron | 15.0% |
| !! | TTGTTTAGTTATTAATATTC+TGG | + | chr4.4:6691410-6691429 | MS.gene030443:intron | 15.0% |
| !!! | AACCTTTTTACAATTATATT+TGG | - | chr4.4:6689053-6689072 | None:intergenic | 15.0% |
| !!! | CTGTTTTCTTAAATAAAATA+AGG | + | chr4.4:6690631-6690650 | MS.gene030443:intron | 15.0% |
| !! | AAGATATTATAAGCATAAAC+GGG | - | chr4.4:6689485-6689504 | None:intergenic | 20.0% |
| !! | AAGTTAATTTCTTAATCATC+TGG | + | chr4.4:6691268-6691287 | MS.gene030443:intron | 20.0% |
| !! | AATAACTAAACAAGAATTAC+AGG | - | chr4.4:6691403-6691422 | None:intergenic | 20.0% |
| !! | ATAACTAAACAAGAATTACA+GGG | - | chr4.4:6691402-6691421 | None:intergenic | 20.0% |
| !! | ATTAATTAGAACTCAAAAAC+AGG | - | chr4.4:6689991-6690010 | None:intergenic | 20.0% |
| !! | ATTTATGGCATTTCAAATAT+TGG | + | chr4.4:6690362-6690381 | MS.gene030443:intron | 20.0% |
| !! | CAAGATATTATAAGCATAAA+CGG | - | chr4.4:6689486-6689505 | None:intergenic | 20.0% |
| !! | GAATAAAGAGAAATCTTAAT+TGG | - | chr4.4:6691087-6691106 | None:intergenic | 20.0% |
| !! | GTTAAAATAGCTTATGAAAA+TGG | + | chr4.4:6689303-6689322 | MS.gene030443:intron | 20.0% |
| !! | TAAAAATTCATACTTAGAGA+AGG | + | chr4.4:6690336-6690355 | MS.gene030443:intron | 20.0% |
| !! | TAAAGTCAAAAGTGATAAAT+TGG | + | chr4.4:6690896-6690915 | MS.gene030443:intron | 20.0% |
| !! | TAAGATTTCTCTTTATTCAT+TGG | + | chr4.4:6691089-6691108 | MS.gene030443:intron | 20.0% |
| !! | TAATTTCGATAATTCTGTTA+TGG | + | chr4.4:6688704-6688723 | MS.gene030443:CDS | 20.0% |
| !! | TACTAAAAGTAATCAAAAAC+AGG | - | chr4.4:6689928-6689947 | None:intergenic | 20.0% |
| !! | TCTTAAATAAAATAAGGTTC+GGG | + | chr4.4:6690637-6690656 | MS.gene030443:intron | 20.0% |
| !! | TTATTTAAGAAAACAGAAAG+AGG | - | chr4.4:6690627-6690646 | None:intergenic | 20.0% |
| !!! | GATTTTTGATTATATTTGCA+TGG | + | chr4.4:6689614-6689633 | MS.gene030443:intron | 20.0% |
| !!! | TATTTTGATAACAATCTTGT+TGG | + | chr4.4:6689001-6689020 | MS.gene030443:CDS | 20.0% |
| ! | ACTTAGAGAAGGAAAATTTA+TGG | + | chr4.4:6690347-6690366 | MS.gene030443:intron | 25.0% |
| ! | ATATAAGGCATGAGATTATT+TGG | - | chr4.4:6690178-6690197 | None:intergenic | 25.0% |
| ! | CTTAAACAAAACCACATATA+TGG | + | chr4.4:6689374-6689393 | MS.gene030443:intron | 25.0% |
| ! | GGCCAAATATAATTGTAAAA+AGG | + | chr4.4:6689048-6689067 | MS.gene030443:CDS | 25.0% |
| ! | TATAAGGCATGAGATTATTT+GGG | - | chr4.4:6690177-6690196 | None:intergenic | 25.0% |
| ! | TATCAATCTCTATGAAGTTA+TGG | + | chr4.4:6689027-6689046 | MS.gene030443:CDS | 25.0% |
| ! | TCTCAGAATTAAAGATGATT+TGG | + | chr4.4:6688797-6688816 | MS.gene030443:CDS | 25.0% |
| ! | TGACACTATGACAAATTATT+GGG | + | chr4.4:6690542-6690561 | MS.gene030443:intron | 25.0% |
| ! | TTGTCAGTATCAATAAGTAA+GGG | - | chr4.4:6690757-6690776 | None:intergenic | 25.0% |
| ! | TTGTGATACTATAGAATGTT+TGG | + | chr4.4:6689560-6689579 | MS.gene030443:intron | 25.0% |
| ! | TTTATAGTACGTAACAATCA+TGG | + | chr4.4:6691243-6691262 | MS.gene030443:intron | 25.0% |
| ! | TTTGTCAGTATCAATAAGTA+AGG | - | chr4.4:6690758-6690777 | None:intergenic | 25.0% |
| !!! | AAAGTGATAAATTGGTTTTC+AGG | + | chr4.4:6690904-6690923 | MS.gene030443:intron | 25.0% |
| !!! | AGTGTCACAATTTTAAGAAA+TGG | - | chr4.4:6690529-6690548 | None:intergenic | 25.0% |
| !!! | ATTTATTTTTAGATTCGACG+CGG | + | chr4.4:6688922-6688941 | MS.gene030443:intron | 25.0% |
| !!! | CTCTACTTTTCATTATGATT+TGG | + | chr4.4:6689105-6689124 | MS.gene030443:intron | 25.0% |
| !!! | TTTCTTGTTTTTGCCATATA+CGG | - | chr4.4:6689426-6689445 | None:intergenic | 25.0% |
| AAATGCACTTACCATATATG+TGG | - | chr4.4:6689388-6689407 | None:intergenic | 30.0% | |
| ACGATAATTACAAAGCATGA+CGG | - | chr4.4:6689594-6689613 | None:intergenic | 30.0% | |
| AGTAAAATGATCTTCCATTC+TGG | - | chr4.4:6690091-6690110 | None:intergenic | 30.0% | |
| ATAAAAAATAGCGCAACTTG+TGG | - | chr4.4:6689457-6689476 | None:intergenic | 30.0% | |
| ATCAGTAAGATTATTACGTC+AGG | + | chr4.4:6690787-6690806 | MS.gene030443:intron | 30.0% | |
| ATTGTTATCAAAATAGCGAC+GGG | - | chr4.4:6688996-6689015 | None:intergenic | 30.0% | |
| GACTCTCAAAACAAAAAGAT+TGG | + | chr4.4:6691325-6691344 | MS.gene030443:intron | 30.0% | |
| GATAAAGCAAATAACAGCTT+AGG | + | chr4.4:6690566-6690585 | MS.gene030443:intron | 30.0% | |
| GATTGTTATCAAAATAGCGA+CGG | - | chr4.4:6688997-6689016 | None:intergenic | 30.0% | |
| GTGACACTATGACAAATTAT+TGG | + | chr4.4:6690541-6690560 | MS.gene030443:intron | 30.0% | |
| TATCTCTTGCAATTTCTTCA+AGG | - | chr4.4:6690054-6690073 | None:intergenic | 30.0% | |
| TGGAATTGAAACAAGATTGT+AGG | + | chr4.4:6690817-6690836 | MS.gene030443:intron | 30.0% | |
| TGTCAGTATCAATAAGTAAG+GGG | - | chr4.4:6690756-6690775 | None:intergenic | 30.0% | |
| TTAAGCTGTTTATCCGTATA+TGG | + | chr4.4:6689410-6689429 | MS.gene030443:intron | 30.0% | |
| ! | CTTCAATGGAATTTTCTGAA+AGG | - | chr4.4:6691129-6691148 | None:intergenic | 30.0% |
| ! | TAGATTGTTTTCCCATTTGA+TGG | + | chr4.4:6689867-6689886 | MS.gene030443:intron | 30.0% |
| ! | TATTTGCATGGAAGTTGATT+TGG | + | chr4.4:6689626-6689645 | MS.gene030443:intron | 30.0% |
| !! | TTTTGAGAGTCTTGATCTTT+TGG | - | chr4.4:6691316-6691335 | None:intergenic | 30.0% |
| ACTAGTATACTCTGTAGTGA+AGG | + | chr4.4:6690496-6690515 | MS.gene030443:intron | 35.0% | |
| ATAATTACAAAGCATGACGG+CGG | - | chr4.4:6689591-6689610 | None:intergenic | 35.0% | |
| ATTTGCAACACTTTCACCAA+CGG | - | chr4.4:6688972-6688991 | None:intergenic | 35.0% | |
| CAGAATCTCGATTTCACTAT+GGG | + | chr4.4:6688771-6688790 | MS.gene030443:CDS | 35.0% | |
| CTTTATCATACAGAGATGCA+AGG | - | chr4.4:6690881-6690900 | None:intergenic | 35.0% | |
| GATAAAGCTCAGAAAGAACT+TGG | + | chr4.4:6691197-6691216 | MS.gene030443:CDS | 35.0% | |
| TAATTCTGTTATGGAAGCTG+TGG | + | chr4.4:6688713-6688732 | MS.gene030443:CDS | 35.0% | |
| TATATACAGCAAGTAGCTGT+TGG | + | chr4.4:6690193-6690212 | MS.gene030443:CDS | 35.0% | |
| TCAGAATCTCGATTTCACTA+TGG | + | chr4.4:6688770-6688789 | MS.gene030443:CDS | 35.0% | |
| TCATCATCTGCTACTGTTTA+TGG | + | chr4.4:6689749-6689768 | MS.gene030443:CDS | 35.0% | |
| TTACCTGAGCTCAATGTATA+TGG | + | chr4.4:6690220-6690239 | MS.gene030443:CDS | 35.0% | |
| TTAGAACTCAAAAACAGGCA+TGG | - | chr4.4:6689986-6690005 | None:intergenic | 35.0% | |
| TTGTTATCAAAATAGCGACG+GGG | - | chr4.4:6688995-6689014 | None:intergenic | 35.0% | |
| ! | AACAATCTAGAACAAACCGA+TGG | - | chr4.4:6689856-6689875 | None:intergenic | 35.0% |
| ! | ACAATCTAGAACAAACCGAT+GGG | - | chr4.4:6689855-6689874 | None:intergenic | 35.0% |
| ! | ATATTCTGGACCTTTTCTTC+AGG | + | chr4.4:6691424-6691443 | MS.gene030443:intron | 35.0% |
| ! | TATTCTGGACCTTTTCTTCA+GGG | + | chr4.4:6691425-6691444 | MS.gene030443:intron | 35.0% |
| ! | TCTTTTGGTCAACAAAAGCT+TGG | - | chr4.4:6691301-6691320 | None:intergenic | 35.0% |
| !! | ACAGCTACTTGCTGTATATA+AGG | - | chr4.4:6690193-6690212 | None:intergenic | 35.0% |
| !!! | GATTGTTTTGAGAGAGCTTA+TGG | + | chr4.4:6689235-6689254 | MS.gene030443:intron | 35.0% |
| AACTTGAAATCCTCCACACA+GGG | - | chr4.4:6689791-6689810 | None:intergenic | 40.0% | |
| ACAAGCTCGAAACCATCAAA+TGG | - | chr4.4:6689882-6689901 | None:intergenic | 40.0% | |
| ACCGAGTTTACCACTTTCAT+GGG | - | chr4.4:6690137-6690156 | None:intergenic | 40.0% | |
| AGGTTGTACTGCTTACAACT+TGG | + | chr4.4:6690924-6690943 | MS.gene030443:intron | 40.0% | |
| ATGGTCATGATTATCCTACC+AGG | + | chr4.4:6690239-6690258 | MS.gene030443:CDS | 40.0% | |
| ATTTGAGAAAGCTTCTGGCA+AGG | + | chr4.4:6690987-6691006 | MS.gene030443:CDS | 40.0% | |
| CAAGCTCGAAACCATCAAAT+GGG | - | chr4.4:6689881-6689900 | None:intergenic | 40.0% | |
| CATATTTGGCCCTGAAGAAA+AGG | - | chr4.4:6691437-6691456 | None:intergenic | 40.0% | |
| CATCTCCTCTACACCATATT+TGG | - | chr4.4:6691451-6691470 | None:intergenic | 40.0% | |
| CATTGAAGTTGTGTCCAAGA+AGG | + | chr4.4:6691141-6691160 | MS.gene030443:CDS | 40.0% | |
| CTGAGATACTTCAATCCAGT+TGG | + | chr4.4:6690109-6690128 | MS.gene030443:CDS | 40.0% | |
| CTTCTTGGACACAACTTCAA+TGG | - | chr4.4:6691143-6691162 | None:intergenic | 40.0% | |
| GGTTGTACTGCTTACAACTT+GGG | + | chr4.4:6690925-6690944 | MS.gene030443:intron | 40.0% | |
| TAACTTGAAATCCTCCACAC+AGG | - | chr4.4:6689792-6689811 | None:intergenic | 40.0% | |
| TAATTACAAAGCATGACGGC+GGG | - | chr4.4:6689590-6689609 | None:intergenic | 40.0% | |
| TCTGCATTTGAGAAAGCTTC+TGG | + | chr4.4:6690982-6691001 | MS.gene030443:CDS | 40.0% | |
| TGACCATATACATTGAGCTC+AGG | - | chr4.4:6690226-6690245 | None:intergenic | 40.0% | |
| TGGTACATCTGTGCTTGAAA+TGG | + | chr4.4:6690957-6690976 | MS.gene030443:CDS | 40.0% | |
| TGGTCATGATTATCCTACCA+GGG | + | chr4.4:6690240-6690259 | MS.gene030443:CDS | 40.0% | |
| TTACAAGCCATGAATCCCTA+TGG | + | chr4.4:6689809-6689828 | MS.gene030443:CDS | 40.0% | |
| TTATTACGTCAGGCATGTAC+TGG | + | chr4.4:6690797-6690816 | MS.gene030443:intron | 40.0% | |
| TTCAAATAGCTGAGCCAGAA+TGG | + | chr4.4:6690074-6690093 | MS.gene030443:CDS | 40.0% | |
| TTCATCTTCCCAAAAGATCC+TGG | + | chr4.4:6688602-6688621 | MS.gene030443:CDS | 40.0% | |
| TTTCAAGCACAGATGTACCA+CGG | - | chr4.4:6690957-6690976 | None:intergenic | 40.0% | |
| TTTGCTGGATTAAAAGCCGT+TGG | + | chr4.4:6688953-6688972 | MS.gene030443:CDS | 40.0% | |
| ! | CTTTTCGCAACGGAAAACAT+AGG | + | chr4.4:6690713-6690732 | MS.gene030443:CDS | 40.0% |
| ! | CTTTTCTTCAGGGCCAAATA+TGG | + | chr4.4:6691435-6691454 | MS.gene030443:intron | 40.0% |
| ! | TCGAGATTCTGAGAAAGTTG+AGG | - | chr4.4:6688762-6688781 | None:intergenic | 40.0% |
| ! | TGCAGAAGCACAAACATGTT+AGG | - | chr4.4:6689717-6689736 | None:intergenic | 40.0% |
| AAGCTCAGAAAGAACTTGGC+TGG | + | chr4.4:6691201-6691220 | MS.gene030443:CDS | 45.0% | |
| AATCCAAACCAGAGAGCGAT+TGG | - | chr4.4:6689177-6689196 | None:intergenic | 45.0% | |
| AATTACAAAGCATGACGGCG+GGG | - | chr4.4:6689589-6689608 | None:intergenic | 45.0% | |
| ACTGCTTACAACTTGGGAAC+TGG | + | chr4.4:6690931-6690950 | MS.gene030443:CDS | 45.0% | |
| CACCGAGTTTACCACTTTCA+TGG | - | chr4.4:6690138-6690157 | None:intergenic | 45.0% | |
| CATCTGCTAAGTCCATCACA+TGG | - | chr4.4:6690670-6690689 | None:intergenic | 45.0% | |
| CATGATTATCCTACCAGGGA+TGG | + | chr4.4:6690244-6690263 | MS.gene030443:CDS | 45.0% | |
| CCAAGGTAACTATCACCCAT+CGG | + | chr4.4:6689837-6689856 | MS.gene030443:intron | 45.0% | |
| CGTTGCGAAAAGCTTTCTCA+CGG | - | chr4.4:6690705-6690724 | None:intergenic | 45.0% | |
| GACCAACAAGTTCACGAACA+CGG | - | chr4.4:6688740-6688759 | None:intergenic | 45.0% | |
| GCCCATGAAAGTGGTAAACT+CGG | + | chr4.4:6690133-6690152 | MS.gene030443:CDS | 45.0% | |
| TCGGGACTATATCCATGTGA+TGG | + | chr4.4:6690655-6690674 | MS.gene030443:CDS | 45.0% | |
| TGTTTGTGCTTCTGCACAGA+TGG | + | chr4.4:6689721-6689740 | MS.gene030443:intron | 45.0% | |
| ! | AGATTATTTGGGATGCCCCT+GGG | - | chr4.4:6690166-6690185 | None:intergenic | 45.0% |
| ! | CGTGAGAAAGCTTTTCGCAA+CGG | + | chr4.4:6690703-6690722 | MS.gene030443:CDS | 45.0% |
| ! | TAAACTCGGTGAAGATCCCA+GGG | + | chr4.4:6690147-6690166 | MS.gene030443:CDS | 45.0% |
| !! | CATGTGATGGACTTAGCAGA+TGG | + | chr4.4:6690668-6690687 | MS.gene030443:CDS | 45.0% |
| AACAACCCATGGGGTTACTC+GGG | + | chr4.4:6691498-6691517 | MS.gene030443:CDS | 50.0% | |
| AAGCCATGAATCCCTATGGC+CGG | + | chr4.4:6689813-6689832 | MS.gene030443:CDS | 50.0% | |
| AAGTTGTGTCCAAGAAGGCC+GGG | + | chr4.4:6691146-6691165 | MS.gene030443:CDS | 50.0% | |
| ACCTGACACAATACCCTGTG+TGG | + | chr4.4:6689775-6689794 | MS.gene030443:CDS | 50.0% | |
| ACGGTGCTTCAGCTTCTTCA+AGG | + | chr4.4:6688657-6688676 | MS.gene030443:CDS | 50.0% | |
| ACTGGGCTAAGAACAACCCA+TGG | + | chr4.4:6691487-6691506 | MS.gene030443:CDS | 50.0% | |
| ATGGTGTAGAGGAGATGTGC+AGG | + | chr4.4:6691454-6691473 | MS.gene030443:CDS | 50.0% | |
| CAGGGCCAAATATGGTGTAG+AGG | + | chr4.4:6691443-6691462 | MS.gene030443:intron | 50.0% | |
| CCGATGGGTGATAGTTACCT+TGG | - | chr4.4:6689840-6689859 | None:intergenic | 50.0% | |
| CTGGGCTAAGAACAACCCAT+GGG | + | chr4.4:6691488-6691507 | MS.gene030443:CDS | 50.0% | |
| GAACAACCCATGGGGTTACT+CGG | + | chr4.4:6691497-6691516 | MS.gene030443:CDS | 50.0% | |
| GAAGTTGTGTCCAAGAAGGC+CGG | + | chr4.4:6691145-6691164 | MS.gene030443:CDS | 50.0% | |
| GACCGTGTTCGTGAACTTGT+TGG | + | chr4.4:6688735-6688754 | MS.gene030443:CDS | 50.0% | |
| GGGTGATAGTTACCTTGGTC+CGG | - | chr4.4:6689835-6689854 | None:intergenic | 50.0% | |
| GTGCTTCAGCTTCTTCAAGG+TGG | + | chr4.4:6688660-6688679 | MS.gene030443:CDS | 50.0% | |
| GTGTTTGTCCAATCGCTCTC+TGG | + | chr4.4:6689166-6689185 | MS.gene030443:intron | 50.0% | |
| TAAACCTCAGTAGCATCCCC+CGG | - | chr4.4:6691167-6691186 | None:intergenic | 50.0% | |
| TCCCAAAAGATCCTGGTCAC+CGG | + | chr4.4:6688609-6688628 | MS.gene030443:CDS | 50.0% | |
| TGACACAATACCCTGTGTGG+AGG | + | chr4.4:6689778-6689797 | MS.gene030443:CDS | 50.0% | |
| TGGGCTAAGAACAACCCATG+GGG | + | chr4.4:6691489-6691508 | MS.gene030443:CDS | 50.0% | |
| TGGTGTAGAGGAGATGTGCA+GGG | + | chr4.4:6691455-6691474 | MS.gene030443:CDS | 50.0% | |
| TGGTTTCATCGGCACTCACA+CGG | + | chr4.4:6688638-6688657 | MS.gene030443:CDS | 50.0% | |
| TGTCCAATCGCTCTCTGGTT+TGG | + | chr4.4:6689171-6689190 | MS.gene030443:intron | 50.0% | |
| ! | AAACTCGGTGAAGATCCCAG+GGG | + | chr4.4:6690148-6690167 | MS.gene030443:CDS | 50.0% |
| ! | ACCGGTGACCAGGATCTTTT+GGG | - | chr4.4:6688613-6688632 | None:intergenic | 50.0% |
| ! | GACGCGGTGATTCATTTTGC+TGG | + | chr4.4:6688938-6688957 | MS.gene030443:CDS | 50.0% |
| ! | GAGATTATTTGGGATGCCCC+TGG | - | chr4.4:6690167-6690186 | None:intergenic | 50.0% |
| ! | GTAAACTCGGTGAAGATCCC+AGG | + | chr4.4:6690146-6690165 | MS.gene030443:CDS | 50.0% |
| !! | TCCACACAGGGTATTGTGTC+AGG | - | chr4.4:6689779-6689798 | None:intergenic | 50.0% |
| ACAACCCATGGGGTTACTCG+GGG | + | chr4.4:6691499-6691518 | MS.gene030443:CDS | 55.0% | |
| AGGAGATGTGCAGGGATCAG+TGG | + | chr4.4:6691463-6691482 | MS.gene030443:CDS | 55.0% | |
| AGTTACCTTGGTCCGGCCAT+AGG | - | chr4.4:6689828-6689847 | None:intergenic | 55.0% | |
| AGTTGTGTCCAAGAAGGCCG+GGG | + | chr4.4:6691147-6691166 | MS.gene030443:CDS | 55.0% | |
| CAAAAGATCCTGGTCACCGG+TGG | + | chr4.4:6688612-6688631 | MS.gene030443:CDS | 55.0% | |
| CCACTTTCATGGGCTCCAAC+TGG | - | chr4.4:6690127-6690146 | None:intergenic | 55.0% | |
| CCAGTTGGAGCCCATGAAAG+TGG | + | chr4.4:6690124-6690143 | MS.gene030443:CDS | 55.0% | |
| GTGCAGGGATCAGTGGAACT+GGG | + | chr4.4:6691470-6691489 | MS.gene030443:CDS | 55.0% | |
| GTTACCTTGGTCCGGCCATA+GGG | - | chr4.4:6689827-6689846 | None:intergenic | 55.0% | |
| TACAACTTGGGAACTGGCCG+TGG | + | chr4.4:6690937-6690956 | MS.gene030443:CDS | 55.0% | |
| TGTGCAGGGATCAGTGGAAC+TGG | + | chr4.4:6691469-6691488 | MS.gene030443:CDS | 55.0% | |
| ! | CACCGGTGACCAGGATCTTT+TGG | - | chr4.4:6688614-6688633 | None:intergenic | 55.0% |
| !! | ACCGGTGGTGCTGGTTTCAT+CGG | + | chr4.4:6688627-6688646 | MS.gene030443:CDS | 55.0% |
| GAATCCCTATGGCCGGACCA+AGG | + | chr4.4:6689820-6689839 | MS.gene030443:CDS | 60.0% | |
| GCCGATGAAACCAGCACCAC+CGG | - | chr4.4:6688631-6688650 | None:intergenic | 60.0% | |
| GCTTCCCCGAGTAACCCCAT+GGG | - | chr4.4:6691506-6691525 | None:intergenic | 60.0% | |
| GGTCCGGCCATAGGGATTCA+TGG | - | chr4.4:6689819-6689838 | None:intergenic | 60.0% | |
| GTTGTGTCCAAGAAGGCCGG+GGG | + | chr4.4:6691148-6691167 | MS.gene030443:CDS | 60.0% | |
| ! | AAGTACCGCAGAGCCATCCC+TGG | - | chr4.4:6690260-6690279 | None:intergenic | 60.0% |
| ! | TCCTACCAGGGATGGCTCTG+CGG | + | chr4.4:6690252-6690271 | MS.gene030443:CDS | 60.0% |
| AACCAGCACCACCGGTGACC+AGG | - | chr4.4:6688623-6688642 | None:intergenic | 65.0% | |
| AAGGCCGGGGGATGCTACTG+AGG | + | chr4.4:6691160-6691179 | MS.gene030443:CDS | 65.0% | |
| ACCGCAGAGCCATCCCTGGT+AGG | - | chr4.4:6690256-6690275 | None:intergenic | 65.0% | |
| ATCCTGGTCACCGGTGGTGC+TGG | + | chr4.4:6688618-6688637 | MS.gene030443:CDS | 65.0% | |
| GGCTTCCCCGAGTAACCCCA+TGG | - | chr4.4:6691507-6691526 | None:intergenic | 65.0% | |
| GTAGCATCCCCCGGCCTTCT+TGG | - | chr4.4:6691158-6691177 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 6688597 | 6691530 | 6688597 | ID=MS.gene030443 |
| chr4.4 | mRNA | 6688597 | 6691530 | 6688597 | ID=MS.gene030443.t1;Parent=MS.gene030443 |
| chr4.4 | exon | 6688597 | 6688841 | 6688597 | ID=MS.gene030443.t1.exon1;Parent=MS.gene030443.t1 |
| chr4.4 | CDS | 6688597 | 6688841 | 6688597 | ID=cds.MS.gene030443.t1;Parent=MS.gene030443.t1 |
| chr4.4 | exon | 6688934 | 6689069 | 6688934 | ID=MS.gene030443.t1.exon2;Parent=MS.gene030443.t1 |
| chr4.4 | CDS | 6688934 | 6689069 | 6688934 | ID=cds.MS.gene030443.t1;Parent=MS.gene030443.t1 |
| chr4.4 | exon | 6689740 | 6689841 | 6689740 | ID=MS.gene030443.t1.exon3;Parent=MS.gene030443.t1 |
| chr4.4 | CDS | 6689740 | 6689841 | 6689740 | ID=cds.MS.gene030443.t1;Parent=MS.gene030443.t1 |
| chr4.4 | exon | 6690046 | 6690273 | 6690046 | ID=MS.gene030443.t1.exon4;Parent=MS.gene030443.t1 |
| chr4.4 | CDS | 6690046 | 6690273 | 6690046 | ID=cds.MS.gene030443.t1;Parent=MS.gene030443.t1 |
| chr4.4 | exon | 6690653 | 6690734 | 6690653 | ID=MS.gene030443.t1.exon5;Parent=MS.gene030443.t1 |
| chr4.4 | CDS | 6690653 | 6690734 | 6690653 | ID=cds.MS.gene030443.t1;Parent=MS.gene030443.t1 |
| chr4.4 | exon | 6690926 | 6691008 | 6690926 | ID=MS.gene030443.t1.exon6;Parent=MS.gene030443.t1 |
| chr4.4 | CDS | 6690926 | 6691008 | 6690926 | ID=cds.MS.gene030443.t1;Parent=MS.gene030443.t1 |
| chr4.4 | exon | 6691134 | 6691225 | 6691134 | ID=MS.gene030443.t1.exon7;Parent=MS.gene030443.t1 |
| chr4.4 | CDS | 6691134 | 6691225 | 6691134 | ID=cds.MS.gene030443.t1;Parent=MS.gene030443.t1 |
| chr4.4 | exon | 6691446 | 6691530 | 6691446 | ID=MS.gene030443.t1.exon8;Parent=MS.gene030443.t1 |
| chr4.4 | CDS | 6691446 | 6691530 | 6691446 | ID=cds.MS.gene030443.t1;Parent=MS.gene030443.t1 |
| Gene Sequence |
| Protein sequence |
