AlfalfaGEDB | MS.gene021092

M. sativa cultivar XinJiangDaYe / MS.gene021092

KEGG: K08678
GO: -
PFAM: PF16363.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021092.t1	XP_003606662.2	99.4	346	1	1	1	346	1	345	4.50E-198	700.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021092.t1	Q9SN95	90.0	339	34	0	6	344	2	340	8.7e-182	637.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021092.t1	G7JUS9	99.4	346	1	1	1	346	1	345	3.3e-198	700.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009458	MS.gene021092	PPI
MS.gene021092	MS.gene30948	PPI
MS.gene021092	MS.gene042467	PPI
MS.gene021092	MS.gene45481	PPI
MS.gene021092	MS.gene41197	PPI
MS.gene021092	MS.gene030443	PPI
MS.gene021092	MS.gene21670	PPI
MS.gene021092	MS.gene56256	PPI
MS.gene021092	MS.gene72188	PPI
MS.gene021092	MS.gene41778	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021092.t1	MTR_4g063600	99.422	346	1	1	1	346	1	345	0.0	708
MS.gene021092.t1	MTR_4g063600	98.555	346	1	2	1	346	1	342	0.0	696
MS.gene021092.t1	MTR_2g096660	90.000	350	30	1	1	345	1	350	0.0	655
MS.gene021092.t1	MTR_4g120030	72.964	307	77	2	34	340	112	412	2.40e-165	468
MS.gene021092.t1	MTR_1g088480	71.293	317	85	2	30	346	115	425	7.10e-165	467
MS.gene021092.t1	MTR_1g067530	62.941	340	93	2	33	340	112	450	1.78e-150	432
MS.gene021092.t1	MTR_1g107455	29.060	351	191	13	33	329	19	365	9.57e-28	112
MS.gene021092.t1	MTR_4g056100	27.954	347	200	12	33	329	19	365	2.13e-27	111
MS.gene021092.t1	MTR_2g073240	28.939	311	198	10	35	329	21	324	9.43e-27	111
MS.gene021092.t1	MTR_7g115080	28.025	314	200	10	33	331	29	331	1.18e-26	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene021092.t1	AT3G46440	89.971	339	34	0	6	344	2	340	626
MS.gene021092.t1	AT3G46440	89.971	339	34	0	6	344	2	340	626
MS.gene021092.t1	AT2G28760	88.696	345	37	1	1	345	32	374	625
MS.gene021092.t1	AT2G28760	88.696	345	37	1	1	345	1	343	624
MS.gene021092.t1	AT2G28760	88.696	345	37	1	1	345	1	343	624
MS.gene021092.t1	AT2G28760	88.696	345	37	1	1	345	1	343	624
MS.gene021092.t1	AT5G59290	87.647	340	42	0	5	344	17	356	619
MS.gene021092.t1	AT5G59290	87.647	340	42	0	5	344	2	341	617
MS.gene021092.t1	AT5G59290	91.054	313	28	0	32	344	22	334	603
MS.gene021092.t1	AT5G59290	91.026	312	28	0	33	344	1	312	601

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Find 101 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGCAGGGGAGATGGCAA+AGG	0.502480	4.3:-40204813	None:intergenic
AAACTGCGAGTTTGCGTTCC+TGG	0.265729	4.3:-40207612	None:intergenic
AAAGAACTTGGAGAAACGCA+GGG	0.625919	4.3:-40204826	None:intergenic
AAATGTGGAGATAAAGATAG+TGG	0.505212	4.3:+40208160	MS.gene021092:CDS
AACATGAGAATCTTGGTTAC+TGG	0.366684	4.3:+40205762	MS.gene021092:CDS
AAGAACTTGGAGAAACGCAG+GGG	0.748466	4.3:-40204825	None:intergenic
AAGCAAAGGAATTGCTTGGC+TGG	0.433406	4.3:+40208228	MS.gene021092:CDS
ACAATAAAGACAAATGTGAT+TGG	0.494499	4.3:+40206700	MS.gene021092:CDS
ACATCAACTTCAGAGGTATA+TGG	0.326566	4.3:+40206876	MS.gene021092:CDS
ACATTGCCCCAATAGCTTTC+AGG	0.235265	4.3:-40206921	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGGAGATAAAGATAG+TGG	+	chr4.3:40208160-40208179	MS.gene021092:CDS	30.0%
ACACATTAGATAATCTCTCA+AGG	-	chr4.3:40206659-40206678	None:intergenic	30.0%
ACTATCTTTATCTCCACATT+TGG	-	chr4.3:40208161-40208180	None:intergenic	30.0%
ACTCAACCATTCATTTAGAT+TGG	-	chr4.3:40205481-40205500	None:intergenic	30.0%
AGATAAAAGAACGTACCAAT+AGG	-	chr4.3:40206951-40206970	None:intergenic	30.0%
ATAGTCTAACATGAGAATCT+TGG	+	chr4.3:40205755-40205774	MS.gene021092:intron	30.0%
ATGTTTACTTGCCAAGTAAA+CGG	-	chr4.3:40206460-40206479	None:intergenic	30.0%
CAAGAATCTTCAACACATAT+GGG	+	chr4.3:40207399-40207418	MS.gene021092:CDS	30.0%
CAGTTACCAATCTAAATGAA+TGG	+	chr4.3:40205472-40205491	MS.gene021092:intron	30.0%
CATTCAAGGATATAACAATG+AGG	-	chr4.3:40205305-40205324	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	40204762	40208334	40204762	ID=MS.gene021092
chr4.3	mRNA	40204762	40208334	40204762	ID=MS.gene021092.t1;Parent=MS.gene021092
chr4.3	exon	40204762	40204851	40204762	ID=MS.gene021092.t1.exon1;Parent=MS.gene021092.t1
chr4.3	CDS	40204762	40204851	40204762	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40205759	40205845	40205759	ID=MS.gene021092.t1.exon2;Parent=MS.gene021092.t1
chr4.3	CDS	40205759	40205845	40205759	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40206009	40206096	40206009	ID=MS.gene021092.t1.exon3;Parent=MS.gene021092.t1
chr4.3	CDS	40206009	40206096	40206009	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40206332	40206423	40206332	ID=MS.gene021092.t1.exon4;Parent=MS.gene021092.t1
chr4.3	CDS	40206332	40206423	40206332	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40206700	40206764	40206700	ID=MS.gene021092.t1.exon5;Parent=MS.gene021092.t1
chr4.3	CDS	40206700	40206764	40206700	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40206866	40206954	40206866	ID=MS.gene021092.t1.exon6;Parent=MS.gene021092.t1
chr4.3	CDS	40206866	40206954	40206866	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40207199	40207276	40207199	ID=MS.gene021092.t1.exon7;Parent=MS.gene021092.t1
chr4.3	CDS	40207199	40207276	40207199	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40207387	40207480	40207387	ID=MS.gene021092.t1.exon8;Parent=MS.gene021092.t1
chr4.3	CDS	40207387	40207480	40207387	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40207587	40207653	40207587	ID=MS.gene021092.t1.exon9;Parent=MS.gene021092.t1
chr4.3	CDS	40207587	40207653	40207587	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40207750	40207813	40207750	ID=MS.gene021092.t1.exon10;Parent=MS.gene021092.t1
chr4.3	CDS	40207750	40207813	40207750	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40207898	40207938	40207898	ID=MS.gene021092.t1.exon11;Parent=MS.gene021092.t1
chr4.3	CDS	40207898	40207938	40207898	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1
chr4.3	exon	40208149	40208334	40208149	ID=MS.gene021092.t1.exon12;Parent=MS.gene021092.t1
chr4.3	CDS	40208149	40208334	40208149	ID=cds.MS.gene021092.t1;Parent=MS.gene021092.t1

Gene Sequence

>MS.gene021092

ATGGCAGGGAATTCTTCTAATGGAGATCAATCCACAACAGCTAAGCAGCCTCCTTTGCCATCTCCCCTGCGTTTCTCCAAGTTCTTTCAGGTAACTCAATTCTTGTGTTTTTTTTTTTTAATCAGAAATTTTCTTGCGACATTGTTGTTCTCATTTGTTTTCTGGATCAATCTGATATAAAACCGTGATATAAAACCGTGTTAAGTTAGTTATTTTGTCCGTGGTTTTCGTAGTTTTTTTTTTATTTGTAGCAAGTAGCACAAACACGGACACTGAACATGTAGATATTGATAATATTTTGAGAAAATTGAAGTGACTGTGTAGTCACGTGGGTCGGTGTCGGACACTAGACAATGACATATCTTCAATTTGAAGTTTAGTAGGTGCTACATAAGCTTCAATTTTTTATTTTTTGTATTTGTTGAATGTGATGATCATAATAAATACAACGAATAACTTAGCATTGTTTATGACTTTGTTCTTCTGTACTTGCATATCAGTGTAAACTTCAGAACATTGAACCATCAGAGCTTGCTACGACCTCATTGTTATATCCTTGAATGAATCTTTTTTATAAGTCTCGAGGGGGGTGATAATTGAGAAAAGATCATATGGATGTTTGGTGTTTTTTTTTCAACTGATGAGTTAAACTCAAAGTTTTTCCCATTTAGCTAATCTAAAAACAGATTCCCTGGAGTAACTGTGTCACGCAGTTACCAATCTAAATGAATGGTTGAGTTTGTTTAAAATAGAGTTAGTGAATGTGTAATATGAGTCATCCGATCTGCAATCAATGATCGAAATTGATAACGGCATGGTAATAGTAATACCGGATCCTTATCTATCCTCTGAAATTGAATACCTCTGGTTCACAAAAATGTCTATGTGAAAATAGATGCATTTTATATGATATCATTGTTTGTTGAAATTTTATTACATGATTATGAATGAGGCCATTATAAGAATGAACTAACATTTTGTTCATTCTTGACAATAGTCTAACATGAGAATCTTGGTTACTGGAGGAGCTGGTTTTATTGGTTCTCACCTTGTCGATAGATTGATGGAAAATGAAAAGAATGAGGTCAGCTCGTTTTTCTTTTTGTTAATATTGTTGAAGTTATCATATTGTTTTTTCTACTGATTTTATGCTTCTTACGTAACATTATCAGCCCTAAATTCGATAAAATAGATGCATAATACAGCATGATCTTATCAACTTCATTAATATCAACATCTTGAATCAGGTCATTGTTGCTGATAACTTCTTCACTGGATCGAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAACTTATCCGTCATGGTATAAAATCCACTTTTTCAATTCAACTATCTTTGCGTAAAACTCTTGTGTTCATGTATCACATCGAACATTAATTTATTTATTTCGTTCCATTTGTTTAGTACATCTCCAAATACTTACGAGTATATTATGTTCAGCATGCATTCAAATCAGTGTGTGACTCGGTAATGCTGATGAATTTGCCAAATCAGTGTGTAACTCAGTAATGCTGATGAATTTTCTGATCCCTTTGTAGATGTCACTGAGACTTTGATGATTGAGGTGGATCAGATCTACCATCTCGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGGTATGATAATGTCTTATTTTGTCTTTAATCAGACCGTTTACTTGGCAAGTAAACATAGTCGTATCAACAATTGAAGAATTTACTTTTAACATCCATTCATTACACGGTCACTGAAATTGGCTGCTTCATATGAAAGAGCATAGAACCCACATGCATAACGCTACATTCTGCATTCTGCAGTATGTTTATATCTGCTGCATCACTCATTGGAATTTCTCTTTTTTCTAATGATCCTTGAGAGATTATCTAATGTGTAAGGAAATAATATTTATACAGACAATAAAGACAAATGTGATTGGCACTCTGAACATGCTTGGGCTTGCAAAGAGAGTTGGAGCAAGGTTAGAAATTTTTCCTTGGGAATAAATTTTATAATTTCAGCTTCTACATGGTCTTAGTTCTGTTTTTCTTTATGGAGTCTTAGTTCTTATTTTATTGACAGGATTTTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGAGCATCCCCAACCTGAAAGCTATTGGGGCAATGTTAACCCTATTGGTACGTTCTTTTATCTCATCCGTTGACTGTTTATTGACCTTCTGAAATGAAATTATATCCGTTGCTATGATTTTTAAAGATACCTGTACTAAATAAACCTTGAAGACCTTTCTTATTTAATATGTTTACAGTATAATATAATTAACTTATTGTTTGATTATTCTTTCTCATGACAATAGTTATTCACTTAAGAAGCTAATATGAAAATGTAGCTTAACGAAGAACTTAATTTTGTTCATAACAGGAGTTCGTAGCTGCTATGACGAGGGGAAACGTGTGGCCGAGACTTTGATGTTTGATTATCATAGGCAACATGGAATAGGTAATTCCTGGTCTTCTGTTCCTCTTAATCTCCTCTCGTTCTCTGTATGGTATATAGCCTGTAGAAGTTTTGCTTTGTAATTTAAGAAGCTAATATCTTTTCCAATGCAGAAATACGTGTTGCAAGAATCTTCAACACATATGGGCCTCGCATGAATATCGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGGTAATTAAACTTGCCTTTTCTTCTGCTATGTTCTCCCTATTTCTAAATCAATGCTCTACCAGTTTAACTAACTGTCTTTTCTAACGTAACCATTGGTGTGTTTTAGTGGTGAATCCTTGACTGTCCAAGCGCCAGGAACGCAAACTCGCAGTTTCTGCTATGTCTCTGACCTGGTAATATGTCCCGTTCAATCTTTGTTTTTTTTTTCTTTTTTTCTCATTGAATTATACTAGTGGTATGCTGATTTTATGTATTTTAATGTCCCTTAGGTTGATGGCCTTATCCGTCTCATGGGAGGATCAGACACTGGTCCAATCAATCTTGGCAACCCAGGTTAGATTTTTACAATTGATTTTCTTTGCCTTTTTGAATTGTTATATTTTTTATTTAATTGCTTGAGTCTCTTTGCCTTTTCAGGTGAATTCACGATGATGGAACTTGCTGAGACAGTGAAGGAGGTCGGTTCTTTTATCCGTTTCATTGTTTTGTTTACACACTTGTAAACTTACTGATGTTAAATATGGCTCTATATCGCTATTGCGTAGCGGTATACGAACAAACTGATGTTTCCACGATTTGCAATTGTCAACACAATTACAAGCAGTTAACTGTTATCTGAAACTAAACTTGGGAGATAATTTTGAATTAATGTTTTGTTTGATTTGCAGCTTATTAATCCAAATGTGGAGATAAAGATAGTGGAGAATACTCCTGATGATCCAAGACAGAGAAAACCAGACATAACCAAAGCAAAGGAATTGCTTGGCTGGGAACCAAAGGTCAAGCTGAGTGAAGGTCTTCCTCTCATGGAAGGAGATTTCCGTTTGAGGCTTGGAGTTGACAAGAAAGAATAA

Protein sequence

>MS.gene021092.t1

MAGNSSNGDQSTTAKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTETLMIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQALRGESLTVQAPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINLGNPGEFTMMELAETVKELINPNVEIKIVENTPDDPRQRKPDITKAKELLGWEPKVKLSEGLPLMEGDFRLRLGVDKKE