Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030719.t1 | ACJ84110.1 | 99.1 | 234 | 2 | 0 | 1 | 234 | 1 | 234 | 5.90E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030719.t1 | Q9C9C5 | 81.5 | 232 | 43 | 0 | 3 | 234 | 2 | 233 | 3.2e-103 | 375.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030719.t1 | B7FH81 | 99.1 | 234 | 2 | 0 | 1 | 234 | 1 | 234 | 4.3e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035331 | MS.gene030719 | PPI |
| MS.gene030719 | MS.gene067072 | PPI |
| MS.gene036487 | MS.gene030719 | PPI |
| MS.gene59319 | MS.gene030719 | PPI |
| MS.gene58173 | MS.gene030719 | PPI |
| MS.gene042025 | MS.gene030719 | PPI |
| MS.gene010453 | MS.gene030719 | PPI |
| MS.gene013401 | MS.gene030719 | PPI |
| MS.gene31056 | MS.gene030719 | PPI |
| MS.gene31039 | MS.gene030719 | PPI |
| MS.gene030719 | MS.gene31056 | PPI |
| MS.gene75537 | MS.gene030719 | PPI |
| MS.gene06501 | MS.gene030719 | PPI |
| MS.gene049376 | MS.gene030719 | PPI |
| MS.gene42910 | MS.gene030719 | PPI |
| MS.gene70316 | MS.gene030719 | PPI |
| MS.gene06481 | MS.gene030719 | PPI |
| MS.gene70551 | MS.gene030719 | PPI |
| MS.gene045180 | MS.gene030719 | PPI |
| MS.gene81197 | MS.gene030719 | PPI |
| MS.gene52173 | MS.gene030719 | PPI |
| MS.gene023799 | MS.gene030719 | PPI |
| MS.gene42236 | MS.gene030719 | PPI |
| MS.gene73008 | MS.gene030719 | PPI |
| MS.gene27648 | MS.gene030719 | PPI |
| MS.gene28147 | MS.gene030719 | PPI |
| MS.gene041557 | MS.gene030719 | PPI |
| MS.gene047734 | MS.gene030719 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030719.t1 | MTR_5g098090 | 96.154 | 234 | 9 | 0 | 1 | 234 | 1 | 234 | 9.93e-163 | 449 |
| MS.gene030719.t1 | MTR_8g091910 | 92.735 | 234 | 2 | 1 | 1 | 234 | 1 | 219 | 3.56e-153 | 424 |
| MS.gene030719.t1 | MTR_3g094570 | 85.897 | 234 | 32 | 1 | 1 | 234 | 1 | 233 | 9.06e-145 | 404 |
| MS.gene030719.t1 | MTR_3g094860 | 85.897 | 234 | 32 | 1 | 1 | 234 | 1 | 233 | 2.25e-144 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030719.t1 | AT1G74050 | 81.466 | 232 | 43 | 0 | 3 | 234 | 2 | 233 | 2.00e-122 | 347 |
| MS.gene030719.t1 | AT1G74060 | 80.603 | 232 | 45 | 0 | 3 | 234 | 2 | 233 | 1.02e-120 | 343 |
| MS.gene030719.t1 | AT1G18540 | 78.879 | 232 | 49 | 0 | 3 | 234 | 2 | 233 | 7.51e-116 | 330 |
Find 57 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCCGGTAGATTTA+AGG | 0.142019 | 4.3:-9407701 | MS.gene030719:CDS |
| CCAATTCCTCTGATCAAATC+AGG | 0.248411 | 4.3:+9408272 | None:intergenic |
| TCATCAGCAGGGTAAAATTT+TGG | 0.250055 | 4.3:+9408128 | None:intergenic |
| TCTGGATTGCTTCTTGTAAC+TGG | 0.291952 | 4.3:-9407646 | MS.gene030719:intron |
| CCTGATTTGATCAGAGGAAT+TGG | 0.319315 | 4.3:-9408272 | MS.gene030719:CDS |
| TCAACAGCAGTTTCGGGCTT+AGG | 0.337911 | 4.3:+9408158 | None:intergenic |
| GCAGTTTCGGGCTTAGGTTT+AGG | 0.345228 | 4.3:+9408164 | None:intergenic |
| TCCTTTGAGACGTGTGAATC+AGG | 0.346287 | 4.3:-9407096 | MS.gene030719:CDS |
| GAAAGGTATCTGGGCTATTA+AGG | 0.349673 | 4.3:-9408219 | MS.gene030719:CDS |
| TGTATCACAAGAAAGGTATC+TGG | 0.350934 | 4.3:-9408229 | MS.gene030719:CDS |
| CTCTGATCAAATCAGGGTTT+CGG | 0.358025 | 4.3:+9408279 | None:intergenic |
| CTTCTTGCCGGTAGATTTAA+GGG | 0.364740 | 4.3:-9407700 | MS.gene030719:CDS |
| CCAGACTTGAAGACTTATCT+TGG | 0.410256 | 4.3:-9406765 | MS.gene030719:CDS |
| CCAAGATAAGTCTTCAAGTC+TGG | 0.428069 | 4.3:+9406765 | None:intergenic |
| TTGAAAAGTACTTGTCATCA+AGG | 0.430348 | 4.3:+9407018 | None:intergenic |
| ACAGTGCTGATTCTTCTTGC+CGG | 0.435264 | 4.3:-9407712 | MS.gene030719:CDS |
| CGAATTCTTTGAGTCAGATA+AGG | 0.457015 | 4.3:-9406961 | MS.gene030719:CDS |
| GGCTTCTTCACATCATCAGC+AGG | 0.465308 | 4.3:+9408116 | None:intergenic |
| TGAAGACTTATCTTGGTGCC+AGG | 0.466625 | 4.3:-9406758 | MS.gene030719:CDS |
| AAGAAGAATCAGCACTGTGC+CGG | 0.476099 | 4.3:+9407717 | None:intergenic |
| AACACCGGAGATATCGACTT+TGG | 0.477360 | 4.3:+9407052 | None:intergenic |
| ACCTGCCTTGAGAGAAAACC+TGG | 0.493075 | 4.3:+9406740 | None:intergenic |
| ATCAGGGTTTCGGCTAACCC+TGG | 0.499591 | 4.3:+9408289 | None:intergenic |
| TGGTCATCTTTCTTCTGCTG+AGG | 0.501451 | 4.3:+9406831 | None:intergenic |
| AGAAGAATCAGCACTGTGCC+GGG | 0.513749 | 4.3:+9407718 | None:intergenic |
| CAATTCCTCTGATCAAATCA+GGG | 0.517272 | 4.3:+9408273 | None:intergenic |
| AGGAACTCCGTTGATCTTGA+AGG | 0.517314 | 4.3:+9407115 | None:intergenic |
| CGATATCTCCGGTGTTAATG+TGG | 0.532682 | 4.3:-9407045 | MS.gene030719:CDS |
| GTGAATCAGGCCTATGTGAT+TGG | 0.535696 | 4.3:-9407083 | MS.gene030719:CDS |
| CTGGGTGCTCTCTGCTTCGT+CGG | 0.540977 | 4.3:+9408308 | None:intergenic |
| TCACAGATGTATCACAAGAA+AGG | 0.542107 | 4.3:-9408236 | MS.gene030719:CDS |
| TTCAGGGCAAGCATCACTCC+CGG | 0.546234 | 4.3:-9407736 | MS.gene030719:intron |
| CCTCTTGCCCTTAAATCTAC+CGG | 0.549567 | 4.3:+9407693 | None:intergenic |
| GTATCACAAGAAAGGTATCT+GGG | 0.554030 | 4.3:-9408228 | MS.gene030719:CDS |
| GGCTTATGCTTGTTGCGAAG+AGG | 0.566563 | 4.3:+9408095 | None:intergenic |
| AGCCTAAGCAGACTAAGCTC+AGG | 0.567914 | 4.3:-9408076 | MS.gene030719:intron |
| TCAGGGTTTCGGCTAACCCT+GGG | 0.568120 | 4.3:+9408290 | None:intergenic |
| CGAAACCCTGATTTGATCAG+AGG | 0.574541 | 4.3:-9408278 | MS.gene030719:CDS |
| CGGTAGATTTAAGGGCAAGA+GGG | 0.577532 | 4.3:-9407692 | MS.gene030719:CDS |
| GCCTGATTCACACGTCTCAA+AGG | 0.578175 | 4.3:+9407095 | None:intergenic |
| TCAACCAAAGTCGATATCTC+CGG | 0.580594 | 4.3:-9407056 | MS.gene030719:CDS |
| CCGGTAGATTTAAGGGCAAG+AGG | 0.581183 | 4.3:-9407693 | MS.gene030719:CDS |
| AACCTGAGCTTAGTCTGCTT+AGG | 0.583716 | 4.3:+9408074 | None:intergenic |
| GGAACTCCGTTGATCTTGAA+GGG | 0.585587 | 4.3:+9407116 | None:intergenic |
| GGTTGATGTACCAATCACAT+AGG | 0.591225 | 4.3:+9407073 | None:intergenic |
| GACGAAGCAGAGAGCACCCA+GGG | 0.611105 | 4.3:-9408306 | MS.gene030719:CDS |
| AACTAGAAGACGAGTTCGTG+TGG | 0.615065 | 4.3:+9406711 | None:intergenic |
| TCAGGTCCCTTCAAGATCAA+CGG | 0.616664 | 4.3:-9407122 | MS.gene030719:intron |
| ATTCTTTGAGTCAGATAAGG+AGG | 0.630746 | 4.3:-9406958 | MS.gene030719:intron |
| TAGATTTAAGGGCAAGAGGG+TGG | 0.640763 | 4.3:-9407689 | MS.gene030719:CDS |
| GTTACAAGAAGCAATCCAGA+AGG | 0.643198 | 4.3:+9407649 | None:intergenic |
| CGACGAAGCAGAGAGCACCC+AGG | 0.649766 | 4.3:-9408307 | MS.gene030719:CDS |
| GCTTCTTCACATCATCAGCA+GGG | 0.669182 | 4.3:+9408117 | None:intergenic |
| AAGGTTATCCACATTAACAC+CGG | 0.677708 | 4.3:+9407037 | None:intergenic |
| TTAGGTTTAGGATCATGACG+AGG | 0.681191 | 4.3:+9408176 | None:intergenic |
| TAGGTTTAGGATCATGACGA+GGG | 0.683516 | 4.3:+9408177 | None:intergenic |
| GAAAGATGACCAGAAAACAG+TGG | 0.686525 | 4.3:-9406820 | MS.gene030719:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATGATTTTGATATTATTT+GGG | - | chr4.3:9407163-9407182 | MS.gene030719:intron | 15.0% |
| !!! | TACATGATTTTGATATTATT+TGG | - | chr4.3:9407162-9407181 | MS.gene030719:intron | 15.0% |
| !! | AAGATCAGAAATTTAATTGA+TGG | + | chr4.3:9407477-9407496 | None:intergenic | 20.0% |
| !! | AATATCAAAATCATGTACAA+AGG | + | chr4.3:9407159-9407178 | None:intergenic | 20.0% |
| !!! | CAGTTATTCTTATCATTTTA+CGG | - | chr4.3:9407000-9407019 | MS.gene030719:CDS | 20.0% |
| !!! | TCTTATTCTTTTTATGTACT+AGG | - | chr4.3:9407493-9407512 | MS.gene030719:intron | 20.0% |
| !!! | TGTTTTTTATTTTTGATTGC+AGG | - | chr4.3:9408159-9408178 | MS.gene030719:CDS | 20.0% |
| !!! | TTTTGATATTATTTGGGATA+TGG | - | chr4.3:9407169-9407188 | MS.gene030719:intron | 20.0% |
| ! | TCACCTAAAATAACAAATAC+TGG | + | chr4.3:9407134-9407153 | None:intergenic | 25.0% |
| !!! | AATCACTTTTGTTTTGTGTT+GGG | - | chr4.3:9407257-9407276 | MS.gene030719:intron | 25.0% |
| !!! | CAACCAGTATTTGTTATTTT+AGG | - | chr4.3:9407128-9407147 | MS.gene030719:intron | 25.0% |
| !!! | TAATCACTTTTGTTTTGTGT+TGG | - | chr4.3:9407256-9407275 | MS.gene030719:intron | 25.0% |
| ACAGTGTTCTTTGTGTTAAT+TGG | - | chr4.3:9407070-9407089 | MS.gene030719:CDS | 30.0% | |
| AGAAATGTTGACGAGATATA+AGG | - | chr4.3:9407527-9407546 | MS.gene030719:intron | 30.0% | |
| CAGTGTTCTTTGTGTTAATT+GGG | - | chr4.3:9407071-9407090 | MS.gene030719:CDS | 30.0% | |
| GAAATGTTGACGAGATATAA+GGG | - | chr4.3:9407528-9407547 | MS.gene030719:intron | 30.0% | |
| GATGTCAACATTGAATATCA+TGG | - | chr4.3:9407803-9407822 | MS.gene030719:intron | 30.0% | |
| TATTCAATGTTGACATCAGT+TGG | + | chr4.3:9407800-9407819 | None:intergenic | 30.0% | |
| TTTGTGTTAATTGGGATTAC+TGG | - | chr4.3:9407079-9407098 | MS.gene030719:CDS | 30.0% | |
| TTTGTTGCTCTTGATTGATA+AGG | - | chr4.3:9407423-9407442 | MS.gene030719:intron | 30.0% | |
| ! | TGATGACAAGTACTTTTCAA+AGG | - | chr4.3:9408012-9408031 | MS.gene030719:intron | 30.0% |
| ! | TTTTTCTTACTTTGCATCTC+AGG | - | chr4.3:9407887-9407906 | MS.gene030719:intron | 30.0% |
| !! | ACATAAGTTTTGTCACTGTT+TGG | + | chr4.3:9407706-9407725 | None:intergenic | 30.0% |
| !! | CATAAGTTTTGTCACTGTTT+GGG | + | chr4.3:9407705-9407724 | None:intergenic | 30.0% |
| !! | TTGAAAAGTACTTGTCATCA+AGG | + | chr4.3:9408012-9408031 | None:intergenic | 30.0% |
| !! | TTTTTGATTGCAGGAGAAAA+AGG | - | chr4.3:9408168-9408187 | MS.gene030719:CDS | 30.0% |
| AAGGTTATCCACATTAACAC+CGG | + | chr4.3:9407993-9408012 | None:intergenic | 35.0% | |
| ATTCTTTGAGTCAGATAAGG+AGG | - | chr4.3:9408069-9408088 | MS.gene030719:intron | 35.0% | |
| CAATTCCTCTGATCAAATCA+GGG | + | chr4.3:9406757-9406776 | None:intergenic | 35.0% | |
| CGAATTCTTTGAGTCAGATA+AGG | - | chr4.3:9408066-9408085 | MS.gene030719:intron | 35.0% | |
| TCACAGATGTATCACAAGAA+AGG | - | chr4.3:9406791-9406810 | MS.gene030719:CDS | 35.0% | |
| ! | TCATCAGCAGGGTAAAATTT+TGG | + | chr4.3:9406902-9406921 | None:intergenic | 35.0% |
| !! | GTATCACAAGAAAGGTATCT+GGG | - | chr4.3:9406799-9406818 | MS.gene030719:CDS | 35.0% |
| !! | TGGTTTTTCAACAGCAGTTT+CGG | + | chr4.3:9406879-9406898 | None:intergenic | 35.0% |
| !! | TGTATCACAAGAAAGGTATC+TGG | - | chr4.3:9406798-9406817 | MS.gene030719:CDS | 35.0% |
| !!! | TTGGGTCTTTTTTGTCTTCA+GGG | - | chr4.3:9407275-9407294 | MS.gene030719:intron | 35.0% |
| AAAAAGAAGAGCAAGGGAGA+AGG | - | chr4.3:9408043-9408062 | MS.gene030719:intron | 40.0% | |
| CCAAGATAAGTCTTCAAGTC+TGG | + | chr4.3:9408265-9408284 | None:intergenic | 40.0% | |
| CCAATTCCTCTGATCAAATC+AGG | + | chr4.3:9406758-9406777 | None:intergenic | 40.0% | |
| CCAGACTTGAAGACTTATCT+TGG | - | chr4.3:9408262-9408281 | MS.gene030719:CDS | 40.0% | |
| CTCTGATCAAATCAGGGTTT+CGG | + | chr4.3:9406751-9406770 | None:intergenic | 40.0% | |
| CTTCTTGCCGGTAGATTTAA+GGG | - | chr4.3:9407327-9407346 | MS.gene030719:intron | 40.0% | |
| GAAAGATGACCAGAAAACAG+TGG | - | chr4.3:9408207-9408226 | MS.gene030719:CDS | 40.0% | |
| GCTATTAAGGCCAAAAATGG+TGG | - | chr4.3:9406821-9406840 | MS.gene030719:CDS | 40.0% | |
| GTTACAAGAAGCAATCCAGA+AGG | + | chr4.3:9407381-9407400 | None:intergenic | 40.0% | |
| GTTATGCTCATTGCTTCTGT+TGG | - | chr4.3:9408130-9408149 | MS.gene030719:CDS | 40.0% | |
| TCAACCAAAGTCGATATCTC+CGG | - | chr4.3:9407971-9407990 | MS.gene030719:intron | 40.0% | |
| TCTGGATTGCTTCTTGTAAC+TGG | - | chr4.3:9407381-9407400 | MS.gene030719:intron | 40.0% | |
| TCTTCTTGCCGGTAGATTTA+AGG | - | chr4.3:9407326-9407345 | MS.gene030719:intron | 40.0% | |
| TGGGCTATTAAGGCCAAAAA+TGG | - | chr4.3:9406818-9406837 | MS.gene030719:CDS | 40.0% | |
| ! | CCTGATTTGATCAGAGGAAT+TGG | - | chr4.3:9406755-9406774 | MS.gene030719:CDS | 40.0% |
| ! | GGTTGATGTACCAATCACAT+AGG | + | chr4.3:9407957-9407976 | None:intergenic | 40.0% |
| ! | TAGGTTTAGGATCATGACGA+GGG | + | chr4.3:9406853-9406872 | None:intergenic | 40.0% |
| ! | TCAGCAGGGTAAAATTTTGG+TGG | + | chr4.3:9406899-9406918 | None:intergenic | 40.0% |
| ! | TTAGGTTTAGGATCATGACG+AGG | + | chr4.3:9406854-9406873 | None:intergenic | 40.0% |
| !! | GAAAGGTATCTGGGCTATTA+AGG | - | chr4.3:9406808-9406827 | MS.gene030719:CDS | 40.0% |
| !! | GGTTTTTCAACAGCAGTTTC+GGG | + | chr4.3:9406878-9406897 | None:intergenic | 40.0% |
| !!! | CTCCCTTGCTCTTCTTTTTT+GGG | + | chr4.3:9408042-9408061 | None:intergenic | 40.0% |
| !!! | GTTGGGTCTTTTTTGTCTTC+AGG | - | chr4.3:9407274-9407293 | MS.gene030719:intron | 40.0% |
| !!! | TCCCTTGCTCTTCTTTTTTG+GGG | + | chr4.3:9408041-9408060 | None:intergenic | 40.0% |
| !!! | TCTCCCTTGCTCTTCTTTTT+TGG | + | chr4.3:9408043-9408062 | None:intergenic | 40.0% |
| !!! | TTTTTGAAGCAGCTTCCTTC+TGG | - | chr4.3:9407363-9407382 | MS.gene030719:intron | 40.0% |
| AACCTGAGCTTAGTCTGCTT+AGG | + | chr4.3:9406956-9406975 | None:intergenic | 45.0% | |
| AAGAAGAATCAGCACTGTGC+CGG | + | chr4.3:9407313-9407332 | None:intergenic | 45.0% | |
| AGCCCCAAAAAAGAAGAGCA+AGG | - | chr4.3:9408036-9408055 | MS.gene030719:intron | 45.0% | |
| AGGAACTCCGTTGATCTTGA+AGG | + | chr4.3:9407915-9407934 | None:intergenic | 45.0% | |
| CCTCTTGCCCTTAAATCTAC+CGG | + | chr4.3:9407337-9407356 | None:intergenic | 45.0% | |
| CGGTAGATTTAAGGGCAAGA+GGG | - | chr4.3:9407335-9407354 | MS.gene030719:intron | 45.0% | |
| GCCCCAAAAAAGAAGAGCAA+GGG | - | chr4.3:9408037-9408056 | MS.gene030719:intron | 45.0% | |
| GCTTCTTCACATCATCAGCA+GGG | + | chr4.3:9406913-9406932 | None:intergenic | 45.0% | |
| GGAACTCCGTTGATCTTGAA+GGG | + | chr4.3:9407914-9407933 | None:intergenic | 45.0% | |
| GTGAATCAGGCCTATGTGAT+TGG | - | chr4.3:9407944-9407963 | MS.gene030719:intron | 45.0% | |
| TAGATTTAAGGGCAAGAGGG+TGG | - | chr4.3:9407338-9407357 | MS.gene030719:intron | 45.0% | |
| TCAGGTCCCTTCAAGATCAA+CGG | - | chr4.3:9407905-9407924 | MS.gene030719:intron | 45.0% | |
| TGAAGAGAAGCCAAGACAAG+TGG | + | chr4.3:9407859-9407878 | None:intergenic | 45.0% | |
| TGGTCATCTTTCTTCTGCTG+AGG | + | chr4.3:9408199-9408218 | None:intergenic | 45.0% | |
| TTAACAGGCACCACTTGTCT+TGG | - | chr4.3:9407846-9407865 | MS.gene030719:intron | 45.0% | |
| ! | AGGGAAAACGCCACCATTTT+TGG | + | chr4.3:9406834-9406853 | None:intergenic | 45.0% |
| ! | CGAAACCCTGATTTGATCAG+AGG | - | chr4.3:9406749-9406768 | MS.gene030719:CDS | 45.0% |
| ! | CGATATCTCCGGTGTTAATG+TGG | - | chr4.3:9407982-9408001 | MS.gene030719:intron | 45.0% |
| !! | AACACCGGAGATATCGACTT+TGG | + | chr4.3:9407978-9407997 | None:intergenic | 45.0% |
| !! | ACAGTGCTGATTCTTCTTGC+CGG | - | chr4.3:9407315-9407334 | MS.gene030719:intron | 45.0% |
| !! | TCCTTTGAGACGTGTGAATC+AGG | - | chr4.3:9407931-9407950 | MS.gene030719:intron | 45.0% |
| !! | TGAAGACTTATCTTGGTGCC+AGG | - | chr4.3:9408269-9408288 | MS.gene030719:CDS | 45.0% |
| !! | GTTAAAAAAAAAAAAAAAAA+AGG | + | chr4.3:9407831-9407850 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTAAC+AGG | - | chr4.3:9407831-9407850 | MS.gene030719:intron | 5.0% |
| ACCTGCCTTGAGAGAAAACC+TGG | + | chr4.3:9408290-9408309 | None:intergenic | 50.0% | |
| AGAAGAATCAGCACTGTGCC+GGG | + | chr4.3:9407312-9407331 | None:intergenic | 50.0% | |
| AGCCTAAGCAGACTAAGCTC+AGG | - | chr4.3:9406951-9406970 | MS.gene030719:intron | 50.0% | |
| CCGGTAGATTTAAGGGCAAG+AGG | - | chr4.3:9407334-9407353 | MS.gene030719:intron | 50.0% | |
| GCAGTTTCGGGCTTAGGTTT+AGG | + | chr4.3:9406866-9406885 | None:intergenic | 50.0% | |
| GCCTGATTCACACGTCTCAA+AGG | + | chr4.3:9407935-9407954 | None:intergenic | 50.0% | |
| GGCTTCTTCACATCATCAGC+AGG | + | chr4.3:9406914-9406933 | None:intergenic | 50.0% | |
| TCAACAGCAGTTTCGGGCTT+AGG | + | chr4.3:9406872-9406891 | None:intergenic | 50.0% | |
| ! | ATGCAGCGTCCACTGTTTTC+TGG | + | chr4.3:9408219-9408238 | None:intergenic | 50.0% |
| ! | GGCTTATGCTTGTTGCGAAG+AGG | + | chr4.3:9406935-9406954 | None:intergenic | 50.0% |
| !! | TGGTGCCAGGTTTTCTCTCA+AGG | - | chr4.3:9408282-9408301 | MS.gene030719:CDS | 50.0% |
| ATCAGGGTTTCGGCTAACCC+TGG | + | chr4.3:9406741-9406760 | None:intergenic | 55.0% | |
| TCAGGGTTTCGGCTAACCCT+GGG | + | chr4.3:9406740-9406759 | None:intergenic | 55.0% | |
| TTCAGGGCAAGCATCACTCC+CGG | - | chr4.3:9407291-9407310 | MS.gene030719:intron | 55.0% | |
| ! | GCCAGGTTTTCTCTCAAGGC+AGG | - | chr4.3:9408286-9408305 | MS.gene030719:CDS | 55.0% |
| CTGGGTGCTCTCTGCTTCGT+CGG | + | chr4.3:9406722-9406741 | None:intergenic | 60.0% | |
| !! | GACGAAGCAGAGAGCACCCA+GGG | - | chr4.3:9406721-9406740 | MS.gene030719:CDS | 60.0% |
| !! | CGACGAAGCAGAGAGCACCC+AGG | - | chr4.3:9406720-9406739 | MS.gene030719:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 9406713 | 9408336 | 9406713 | ID=MS.gene030719 |
| chr4.3 | mRNA | 9406713 | 9408336 | 9406713 | ID=MS.gene030719.t1;Parent=MS.gene030719 |
| chr4.3 | exon | 9408077 | 9408336 | 9408077 | ID=MS.gene030719.t1.exon1;Parent=MS.gene030719.t1 |
| chr4.3 | CDS | 9408077 | 9408336 | 9408077 | ID=cds.MS.gene030719.t1;Parent=MS.gene030719.t1 |
| chr4.3 | exon | 9407647 | 9407753 | 9407647 | ID=MS.gene030719.t1.exon2;Parent=MS.gene030719.t1 |
| chr4.3 | CDS | 9407647 | 9407753 | 9407647 | ID=cds.MS.gene030719.t1;Parent=MS.gene030719.t1 |
| chr4.3 | exon | 9406959 | 9407140 | 9406959 | ID=MS.gene030719.t1.exon3;Parent=MS.gene030719.t1 |
| chr4.3 | CDS | 9406959 | 9407140 | 9406959 | ID=cds.MS.gene030719.t1;Parent=MS.gene030719.t1 |
| chr4.3 | exon | 9406713 | 9406868 | 9406713 | ID=MS.gene030719.t1.exon4;Parent=MS.gene030719.t1 |
| chr4.3 | CDS | 9406713 | 9406868 | 9406713 | ID=cds.MS.gene030719.t1;Parent=MS.gene030719.t1 |
| Gene Sequence |
| Protein sequence |
