Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28147.t1 | ACJ84110.1 | 98.7 | 234 | 3 | 0 | 1 | 234 | 1 | 234 | 1.30E-124 | 455.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28147.t1 | Q9C9C5 | 81.0 | 232 | 44 | 0 | 3 | 234 | 2 | 233 | 7.1e-103 | 374.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28147.t1 | B7FH81 | 98.7 | 234 | 3 | 0 | 1 | 234 | 1 | 234 | 9.5e-125 | 455.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene28147 | 0.834329 | 3.19E-56 | -1.69E-46 |
| MS.gene049387 | MS.gene28147 | 0.825286 | 5.09E-54 | -1.69E-46 |
| MS.gene050134 | MS.gene28147 | 0.901209 | 3.38E-78 | -1.69E-46 |
| MS.gene050791 | MS.gene28147 | 0.903613 | 2.89E-79 | -1.69E-46 |
| MS.gene050912 | MS.gene28147 | 0.834432 | 3.01E-56 | -1.69E-46 |
| MS.gene051904 | MS.gene28147 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene051984 | MS.gene28147 | 0.833172 | 6.21E-56 | -1.69E-46 |
| MS.gene052412 | MS.gene28147 | 0.828117 | 1.07E-54 | -1.69E-46 |
| MS.gene052664 | MS.gene28147 | 0.854879 | 9.17E-62 | -1.69E-46 |
| MS.gene052666 | MS.gene28147 | 0.827177 | 1.81E-54 | -1.69E-46 |
| MS.gene053224 | MS.gene28147 | 0.883644 | 3.77E-71 | -1.69E-46 |
| MS.gene057272 | MS.gene28147 | 0.892854 | 1.08E-74 | -1.69E-46 |
| MS.gene057641 | MS.gene28147 | 0.891013 | 5.85E-74 | -1.69E-46 |
| MS.gene057643 | MS.gene28147 | 0.915323 | 6.75E-85 | -1.69E-46 |
| MS.gene059340 | MS.gene28147 | 0.817116 | 3.90E-52 | -1.69E-46 |
| MS.gene060432 | MS.gene28147 | 0.850146 | 2.05E-60 | -1.69E-46 |
| MS.gene060483 | MS.gene28147 | 0.852249 | 5.22E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047734 | MS.gene28147 | PPI |
| MS.gene28147 | MS.gene31039 | PPI |
| MS.gene010453 | MS.gene28147 | PPI |
| MS.gene28147 | MS.gene31056 | PPI |
| MS.gene036487 | MS.gene28147 | PPI |
| MS.gene59319 | MS.gene28147 | PPI |
| MS.gene58173 | MS.gene28147 | PPI |
| MS.gene042025 | MS.gene28147 | PPI |
| MS.gene013401 | MS.gene28147 | PPI |
| MS.gene28147 | MS.gene42910 | PPI |
| MS.gene28147 | MS.gene041557 | PPI |
| MS.gene28147 | MS.gene70316 | PPI |
| MS.gene06501 | MS.gene28147 | PPI |
| MS.gene42236 | MS.gene28147 | PPI |
| MS.gene28147 | MS.gene81197 | PPI |
| MS.gene28147 | MS.gene035331 | PPI |
| MS.gene049376 | MS.gene28147 | PPI |
| MS.gene28147 | MS.gene030719 | PPI |
| MS.gene28147 | MS.gene73008 | PPI |
| MS.gene28147 | MS.gene58173 | PPI |
| MS.gene06481 | MS.gene28147 | PPI |
| MS.gene70551 | MS.gene28147 | PPI |
| MS.gene045180 | MS.gene28147 | PPI |
| MS.gene28147 | MS.gene067072 | PPI |
| MS.gene28147 | MS.gene023799 | PPI |
| MS.gene28147 | MS.gene52173 | PPI |
| MS.gene28147 | MS.gene75537 | PPI |
| MS.gene27648 | MS.gene28147 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28147.t1 | MTR_5g098090 | 95.726 | 234 | 10 | 0 | 1 | 234 | 1 | 234 | 5.87e-162 | 447 |
| MS.gene28147.t1 | MTR_8g091910 | 92.308 | 234 | 3 | 1 | 1 | 234 | 1 | 219 | 1.91e-152 | 422 |
| MS.gene28147.t1 | MTR_3g094570 | 85.470 | 234 | 33 | 1 | 1 | 234 | 1 | 233 | 4.25e-144 | 402 |
| MS.gene28147.t1 | MTR_3g094860 | 85.470 | 234 | 33 | 1 | 1 | 234 | 1 | 233 | 1.12e-143 | 401 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28147.t1 | AT1G74050 | 81.034 | 232 | 44 | 0 | 3 | 234 | 2 | 233 | 1.07e-121 | 345 |
| MS.gene28147.t1 | AT1G74060 | 80.172 | 232 | 46 | 0 | 3 | 234 | 2 | 233 | 4.95e-120 | 341 |
| MS.gene28147.t1 | AT1G18540 | 78.448 | 232 | 50 | 0 | 3 | 234 | 2 | 233 | 4.19e-115 | 328 |
Find 57 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCCGGTAGATTTA+AGG | 0.142019 | 4.4:-9768931 | MS.gene28147:CDS |
| TCATCAACAGGGTAAAATTT+TGG | 0.201244 | 4.4:+9769356 | None:intergenic |
| CCAATTCCTCTGATCAAATC+AGG | 0.248411 | 4.4:+9769500 | None:intergenic |
| TCTGGATTGCTTCTTGTAAC+TGG | 0.291952 | 4.4:-9768876 | MS.gene28147:intron |
| CCTGATTTGATCAGAGGAAT+TGG | 0.319315 | 4.4:-9769500 | MS.gene28147:CDS |
| TCAACAGCAGTTTCGGGCTT+AGG | 0.337911 | 4.4:+9769386 | None:intergenic |
| GCAGTTTCGGGCTTAGGTTT+AGG | 0.345228 | 4.4:+9769392 | None:intergenic |
| TCCTTTGAGACGTGTGAATC+AGG | 0.346287 | 4.4:-9768343 | MS.gene28147:CDS |
| GAAAGGTATCTGGGCTATTA+AGG | 0.349673 | 4.4:-9769447 | MS.gene28147:CDS |
| TGTATCACAAGAAAGGTATC+TGG | 0.350934 | 4.4:-9769457 | MS.gene28147:CDS |
| CTCTGATCAAATCAGGGTTT+CGG | 0.358025 | 4.4:+9769507 | None:intergenic |
| CTTCTTGCCGGTAGATTTAA+GGG | 0.364740 | 4.4:-9768930 | MS.gene28147:CDS |
| GGCTTCTTCACATCATCAAC+AGG | 0.376148 | 4.4:+9769344 | None:intergenic |
| CCAGACTTGAAGACTTATCT+TGG | 0.410256 | 4.4:-9768012 | MS.gene28147:CDS |
| CCAAGATAAGTCTTCAAGTC+TGG | 0.428069 | 4.4:+9768012 | None:intergenic |
| TTGAAAAGTACTTGTCATCA+AGG | 0.430348 | 4.4:+9768265 | None:intergenic |
| ACAGTGCTGATTCTTCTTGC+CGG | 0.435264 | 4.4:-9768942 | MS.gene28147:CDS |
| CGAATTCTTTGAGTCAGATA+AGG | 0.457015 | 4.4:-9768208 | MS.gene28147:CDS |
| TGAAGACTTATCTTGGTGCC+AGG | 0.466625 | 4.4:-9768005 | MS.gene28147:CDS |
| AAGAAGAATCAGCACTGTGC+CGG | 0.476099 | 4.4:+9768947 | None:intergenic |
| AACACCGGAGATATCGACTT+TGG | 0.477360 | 4.4:+9768299 | None:intergenic |
| ACCTGCCTTGAGAGAAAACC+TGG | 0.493075 | 4.4:+9767987 | None:intergenic |
| ATCAGGGTTTCGGCTAACCC+TGG | 0.499591 | 4.4:+9769517 | None:intergenic |
| TGGTCATCTTTCTTCTGCTG+AGG | 0.501451 | 4.4:+9768078 | None:intergenic |
| AGAAGAATCAGCACTGTGCC+GGG | 0.513749 | 4.4:+9768948 | None:intergenic |
| CAATTCCTCTGATCAAATCA+GGG | 0.517272 | 4.4:+9769501 | None:intergenic |
| AGGAACTCCGTTGATCTTGA+AGG | 0.517314 | 4.4:+9768362 | None:intergenic |
| CGATATCTCCGGTGTTAATG+TGG | 0.532682 | 4.4:-9768292 | MS.gene28147:CDS |
| GTGAATCAGGCCTATGTGAT+TGG | 0.535696 | 4.4:-9768330 | MS.gene28147:CDS |
| CTGGGTGCTCTCTGCTTCGT+CGG | 0.540977 | 4.4:+9769536 | None:intergenic |
| TCACAGATGTATCACAAGAA+AGG | 0.542107 | 4.4:-9769464 | MS.gene28147:CDS |
| TTCAGGGCAAGCATCACTCC+CGG | 0.546234 | 4.4:-9768966 | MS.gene28147:intron |
| CCTCTTGCCCTTAAATCTAC+CGG | 0.549567 | 4.4:+9768923 | None:intergenic |
| GTATCACAAGAAAGGTATCT+GGG | 0.554030 | 4.4:-9769456 | MS.gene28147:CDS |
| GGCTTATGCTTGTTGCGAAG+AGG | 0.566563 | 4.4:+9769323 | None:intergenic |
| AGCCTAAGCAGACTAAGCTC+AGG | 0.567914 | 4.4:-9769304 | MS.gene28147:intron |
| TCAGGGTTTCGGCTAACCCT+GGG | 0.568120 | 4.4:+9769518 | None:intergenic |
| CGAAACCCTGATTTGATCAG+AGG | 0.574541 | 4.4:-9769506 | MS.gene28147:CDS |
| CGGTAGATTTAAGGGCAAGA+GGG | 0.577532 | 4.4:-9768922 | MS.gene28147:CDS |
| GCCTGATTCACACGTCTCAA+AGG | 0.578175 | 4.4:+9768342 | None:intergenic |
| TCAACCAAAGTCGATATCTC+CGG | 0.580594 | 4.4:-9768303 | MS.gene28147:CDS |
| CCGGTAGATTTAAGGGCAAG+AGG | 0.581183 | 4.4:-9768923 | MS.gene28147:CDS |
| AACCTGAGCTTAGTCTGCTT+AGG | 0.583716 | 4.4:+9769302 | None:intergenic |
| GGAACTCCGTTGATCTTGAA+GGG | 0.585587 | 4.4:+9768363 | None:intergenic |
| GGTTGATGTACCAATCACAT+AGG | 0.591225 | 4.4:+9768320 | None:intergenic |
| GACGAAGCAGAGAGCACCCA+GGG | 0.611105 | 4.4:-9769534 | MS.gene28147:CDS |
| AACTAGAAGACGAGTTCGTG+TGG | 0.615065 | 4.4:+9767958 | None:intergenic |
| TCAGGTCCCTTCAAGATCAA+CGG | 0.616664 | 4.4:-9768369 | MS.gene28147:intron |
| ATTCTTTGAGTCAGATAAGG+AGG | 0.630746 | 4.4:-9768205 | MS.gene28147:intron |
| TAGATTTAAGGGCAAGAGGG+TGG | 0.640763 | 4.4:-9768919 | MS.gene28147:CDS |
| GTTACAAGAAGCAATCCAGA+AGG | 0.643198 | 4.4:+9768879 | None:intergenic |
| CGACGAAGCAGAGAGCACCC+AGG | 0.649766 | 4.4:-9769535 | MS.gene28147:CDS |
| AAGGTTATCCACATTAACAC+CGG | 0.677708 | 4.4:+9768284 | None:intergenic |
| TTAGGTTTAGGATCATGACG+AGG | 0.681191 | 4.4:+9769404 | None:intergenic |
| TAGGTTTAGGATCATGACGA+GGG | 0.683516 | 4.4:+9769405 | None:intergenic |
| GAAAGATGACCAGAAAACAG+TGG | 0.686525 | 4.4:-9768067 | MS.gene28147:CDS |
| GCTTCTTCACATCATCAACA+GGG | 0.739071 | 4.4:+9769345 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTGTTAAAAAAAAAAAAAAA+AGG | + | chr4.4:9769064-9769083 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTAAC+AGG | - | chr4.4:9769062-9769081 | MS.gene28147:intron | 10.0% |
| !!! | ACATGATTTTGATATTATTT+GGG | - | chr4.4:9768408-9768427 | MS.gene28147:intron | 15.0% |
| !!! | TACATGATTTTGATATTATT+TGG | - | chr4.4:9768407-9768426 | MS.gene28147:intron | 15.0% |
| !! | AAGATCAGAAATTTAATTGA+TGG | + | chr4.4:9768722-9768741 | None:intergenic | 20.0% |
| !! | AATATCAAAATCATGTACAA+AGG | + | chr4.4:9768404-9768423 | None:intergenic | 20.0% |
| !!! | CAGTTATTCTTATCATTTTA+CGG | - | chr4.4:9768247-9768266 | MS.gene28147:CDS | 20.0% |
| !!! | TCTTATTCTTTTTATGTACT+AGG | - | chr4.4:9768738-9768757 | MS.gene28147:intron | 20.0% |
| !!! | TGTTTTTTATTTTTGATTGC+AGG | - | chr4.4:9769387-9769406 | MS.gene28147:CDS | 20.0% |
| !!! | TTTTGATATTATTTGGGATA+TGG | - | chr4.4:9768414-9768433 | MS.gene28147:intron | 20.0% |
| ! | TCACCTAAAATAACAAATAC+TGG | + | chr4.4:9768379-9768398 | None:intergenic | 25.0% |
| !!! | AATCACTTTTGTTTTGTGTT+GGG | - | chr4.4:9768502-9768521 | MS.gene28147:intron | 25.0% |
| !!! | CAACCAGTATTTGTTATTTT+AGG | - | chr4.4:9768373-9768392 | MS.gene28147:intron | 25.0% |
| !!! | TAATCACTTTTGTTTTGTGT+TGG | - | chr4.4:9768501-9768520 | MS.gene28147:intron | 25.0% |
| ACAGTGTTCTTTGTGTTAAT+TGG | - | chr4.4:9768315-9768334 | MS.gene28147:CDS | 30.0% | |
| AGAAATGTTGACGAGATATA+AGG | - | chr4.4:9768772-9768791 | MS.gene28147:intron | 30.0% | |
| CAGTGTTCTTTGTGTTAATT+GGG | - | chr4.4:9768316-9768335 | MS.gene28147:CDS | 30.0% | |
| GAAATGTTGACGAGATATAA+GGG | - | chr4.4:9768773-9768792 | MS.gene28147:intron | 30.0% | |
| GATGTCAACATTGAATATCA+TGG | - | chr4.4:9769036-9769055 | MS.gene28147:intron | 30.0% | |
| TATTCAATGTTGACATCAGT+TGG | + | chr4.4:9769033-9769052 | None:intergenic | 30.0% | |
| TTTGTGTTAATTGGGATTAC+TGG | - | chr4.4:9768324-9768343 | MS.gene28147:CDS | 30.0% | |
| TTTGTTGCTCTTGATTGATA+AGG | - | chr4.4:9768668-9768687 | MS.gene28147:intron | 30.0% | |
| ! | TCATCAACAGGGTAAAATTT+TGG | + | chr4.4:9768149-9768168 | None:intergenic | 30.0% |
| ! | TGATGACAAGTACTTTTCAA+AGG | - | chr4.4:9769240-9769259 | MS.gene28147:intron | 30.0% |
| ! | TTTTTCTTACTTTGCATCTC+AGG | - | chr4.4:9769115-9769134 | MS.gene28147:intron | 30.0% |
| !! | ACATAAGTTTTGTCACTGTT+TGG | + | chr4.4:9768939-9768958 | None:intergenic | 30.0% |
| !! | CATAAGTTTTGTCACTGTTT+GGG | + | chr4.4:9768938-9768957 | None:intergenic | 30.0% |
| !! | TTGAAAAGTACTTGTCATCA+AGG | + | chr4.4:9769240-9769259 | None:intergenic | 30.0% |
| !! | TTTTTGATTGCAGGAGAAAA+AGG | - | chr4.4:9769396-9769415 | MS.gene28147:CDS | 30.0% |
| AAGGTTATCCACATTAACAC+CGG | + | chr4.4:9769221-9769240 | None:intergenic | 35.0% | |
| ATTCTTTGAGTCAGATAAGG+AGG | - | chr4.4:9769297-9769316 | MS.gene28147:intron | 35.0% | |
| CAATTCCTCTGATCAAATCA+GGG | + | chr4.4:9768004-9768023 | None:intergenic | 35.0% | |
| CGAATTCTTTGAGTCAGATA+AGG | - | chr4.4:9769294-9769313 | MS.gene28147:intron | 35.0% | |
| TCACAGATGTATCACAAGAA+AGG | - | chr4.4:9768038-9768057 | MS.gene28147:CDS | 35.0% | |
| ! | TCAACAGGGTAAAATTTTGG+TGG | + | chr4.4:9768146-9768165 | None:intergenic | 35.0% |
| !! | GTATCACAAGAAAGGTATCT+GGG | - | chr4.4:9768046-9768065 | MS.gene28147:CDS | 35.0% |
| !! | TGGTTTTTCAACAGCAGTTT+CGG | + | chr4.4:9768126-9768145 | None:intergenic | 35.0% |
| !! | TGTATCACAAGAAAGGTATC+TGG | - | chr4.4:9768045-9768064 | MS.gene28147:CDS | 35.0% |
| !!! | TTGGGTCTTTTTTGTCTTCA+GGG | - | chr4.4:9768520-9768539 | MS.gene28147:intron | 35.0% |
| AAAAAGAAGAGCAAGGGAGA+AGG | - | chr4.4:9769271-9769290 | MS.gene28147:intron | 40.0% | |
| CCAAGATAAGTCTTCAAGTC+TGG | + | chr4.4:9769493-9769512 | None:intergenic | 40.0% | |
| CCAATTCCTCTGATCAAATC+AGG | + | chr4.4:9768005-9768024 | None:intergenic | 40.0% | |
| CCAGACTTGAAGACTTATCT+TGG | - | chr4.4:9769490-9769509 | MS.gene28147:CDS | 40.0% | |
| CTCTGATCAAATCAGGGTTT+CGG | + | chr4.4:9767998-9768017 | None:intergenic | 40.0% | |
| CTTCTTGCCGGTAGATTTAA+GGG | - | chr4.4:9768572-9768591 | MS.gene28147:intron | 40.0% | |
| GAAAGATGACCAGAAAACAG+TGG | - | chr4.4:9769435-9769454 | MS.gene28147:CDS | 40.0% | |
| GCTATTAAGGCCAAAAATGG+TGG | - | chr4.4:9768068-9768087 | MS.gene28147:CDS | 40.0% | |
| GCTTCTTCACATCATCAACA+GGG | + | chr4.4:9768160-9768179 | None:intergenic | 40.0% | |
| GTTACAAGAAGCAATCCAGA+AGG | + | chr4.4:9768626-9768645 | None:intergenic | 40.0% | |
| GTTATGCTCATTGCTTCTGT+TGG | - | chr4.4:9769358-9769377 | MS.gene28147:CDS | 40.0% | |
| TCAACCAAAGTCGATATCTC+CGG | - | chr4.4:9769199-9769218 | MS.gene28147:intron | 40.0% | |
| TCTGGATTGCTTCTTGTAAC+TGG | - | chr4.4:9768626-9768645 | MS.gene28147:intron | 40.0% | |
| TCTTCTTGCCGGTAGATTTA+AGG | - | chr4.4:9768571-9768590 | MS.gene28147:intron | 40.0% | |
| TGGGCTATTAAGGCCAAAAA+TGG | - | chr4.4:9768065-9768084 | MS.gene28147:CDS | 40.0% | |
| ! | CCTGATTTGATCAGAGGAAT+TGG | - | chr4.4:9768002-9768021 | MS.gene28147:CDS | 40.0% |
| ! | GGTTGATGTACCAATCACAT+AGG | + | chr4.4:9769185-9769204 | None:intergenic | 40.0% |
| ! | TAGGTTTAGGATCATGACGA+GGG | + | chr4.4:9768100-9768119 | None:intergenic | 40.0% |
| ! | TTAGGTTTAGGATCATGACG+AGG | + | chr4.4:9768101-9768120 | None:intergenic | 40.0% |
| !! | GAAAGGTATCTGGGCTATTA+AGG | - | chr4.4:9768055-9768074 | MS.gene28147:CDS | 40.0% |
| !! | GGTTTTTCAACAGCAGTTTC+GGG | + | chr4.4:9768125-9768144 | None:intergenic | 40.0% |
| !!! | CTCCCTTGCTCTTCTTTTTT+GGG | + | chr4.4:9769270-9769289 | None:intergenic | 40.0% |
| !!! | GTTGGGTCTTTTTTGTCTTC+AGG | - | chr4.4:9768519-9768538 | MS.gene28147:intron | 40.0% |
| !!! | TCCCTTGCTCTTCTTTTTTG+GGG | + | chr4.4:9769269-9769288 | None:intergenic | 40.0% |
| !!! | TCTCCCTTGCTCTTCTTTTT+TGG | + | chr4.4:9769271-9769290 | None:intergenic | 40.0% |
| !!! | TTTTTGAAGCAGCTTCCTTC+TGG | - | chr4.4:9768608-9768627 | MS.gene28147:intron | 40.0% |
| AACCTGAGCTTAGTCTGCTT+AGG | + | chr4.4:9768203-9768222 | None:intergenic | 45.0% | |
| AAGAAGAATCAGCACTGTGC+CGG | + | chr4.4:9768558-9768577 | None:intergenic | 45.0% | |
| AGCCCCAAAAAAGAAGAGCA+AGG | - | chr4.4:9769264-9769283 | MS.gene28147:intron | 45.0% | |
| AGGAACTCCGTTGATCTTGA+AGG | + | chr4.4:9769143-9769162 | None:intergenic | 45.0% | |
| CCTCTTGCCCTTAAATCTAC+CGG | + | chr4.4:9768582-9768601 | None:intergenic | 45.0% | |
| CGGTAGATTTAAGGGCAAGA+GGG | - | chr4.4:9768580-9768599 | MS.gene28147:intron | 45.0% | |
| GCCCCAAAAAAGAAGAGCAA+GGG | - | chr4.4:9769265-9769284 | MS.gene28147:intron | 45.0% | |
| GGAACTCCGTTGATCTTGAA+GGG | + | chr4.4:9769142-9769161 | None:intergenic | 45.0% | |
| GGCTTCTTCACATCATCAAC+AGG | + | chr4.4:9768161-9768180 | None:intergenic | 45.0% | |
| GTGAATCAGGCCTATGTGAT+TGG | - | chr4.4:9769172-9769191 | MS.gene28147:intron | 45.0% | |
| TAGATTTAAGGGCAAGAGGG+TGG | - | chr4.4:9768583-9768602 | MS.gene28147:intron | 45.0% | |
| TCAGGTCCCTTCAAGATCAA+CGG | - | chr4.4:9769133-9769152 | MS.gene28147:intron | 45.0% | |
| TGAAGAGAAGCCAAGACAAG+TGG | + | chr4.4:9769090-9769109 | None:intergenic | 45.0% | |
| TGGTCATCTTTCTTCTGCTG+AGG | + | chr4.4:9769427-9769446 | None:intergenic | 45.0% | |
| TTAACAGGCACCACTTGTCT+TGG | - | chr4.4:9769077-9769096 | MS.gene28147:intron | 45.0% | |
| ! | AGGGAAAACGCCACCATTTT+TGG | + | chr4.4:9768081-9768100 | None:intergenic | 45.0% |
| ! | CGAAACCCTGATTTGATCAG+AGG | - | chr4.4:9767996-9768015 | MS.gene28147:CDS | 45.0% |
| ! | CGATATCTCCGGTGTTAATG+TGG | - | chr4.4:9769210-9769229 | MS.gene28147:intron | 45.0% |
| !! | AACACCGGAGATATCGACTT+TGG | + | chr4.4:9769206-9769225 | None:intergenic | 45.0% |
| !! | ACAGTGCTGATTCTTCTTGC+CGG | - | chr4.4:9768560-9768579 | MS.gene28147:intron | 45.0% |
| !! | TCCTTTGAGACGTGTGAATC+AGG | - | chr4.4:9769159-9769178 | MS.gene28147:intron | 45.0% |
| !! | TGAAGACTTATCTTGGTGCC+AGG | - | chr4.4:9769497-9769516 | MS.gene28147:CDS | 45.0% |
| ACCTGCCTTGAGAGAAAACC+TGG | + | chr4.4:9769518-9769537 | None:intergenic | 50.0% | |
| AGAAGAATCAGCACTGTGCC+GGG | + | chr4.4:9768557-9768576 | None:intergenic | 50.0% | |
| AGCCTAAGCAGACTAAGCTC+AGG | - | chr4.4:9768198-9768217 | MS.gene28147:intron | 50.0% | |
| CCGGTAGATTTAAGGGCAAG+AGG | - | chr4.4:9768579-9768598 | MS.gene28147:intron | 50.0% | |
| GCAGTTTCGGGCTTAGGTTT+AGG | + | chr4.4:9768113-9768132 | None:intergenic | 50.0% | |
| GCCTGATTCACACGTCTCAA+AGG | + | chr4.4:9769163-9769182 | None:intergenic | 50.0% | |
| TCAACAGCAGTTTCGGGCTT+AGG | + | chr4.4:9768119-9768138 | None:intergenic | 50.0% | |
| ! | ATGCAGCGTCCACTGTTTTC+TGG | + | chr4.4:9769447-9769466 | None:intergenic | 50.0% |
| ! | GGCTTATGCTTGTTGCGAAG+AGG | + | chr4.4:9768182-9768201 | None:intergenic | 50.0% |
| !! | TGGTGCCAGGTTTTCTCTCA+AGG | - | chr4.4:9769510-9769529 | MS.gene28147:CDS | 50.0% |
| ATCAGGGTTTCGGCTAACCC+TGG | + | chr4.4:9767988-9768007 | None:intergenic | 55.0% | |
| TCAGGGTTTCGGCTAACCCT+GGG | + | chr4.4:9767987-9768006 | None:intergenic | 55.0% | |
| TTCAGGGCAAGCATCACTCC+CGG | - | chr4.4:9768536-9768555 | MS.gene28147:intron | 55.0% | |
| ! | GCCAGGTTTTCTCTCAAGGC+AGG | - | chr4.4:9769514-9769533 | MS.gene28147:CDS | 55.0% |
| CTGGGTGCTCTCTGCTTCGT+CGG | + | chr4.4:9767969-9767988 | None:intergenic | 60.0% | |
| !! | GACGAAGCAGAGAGCACCCA+GGG | - | chr4.4:9767968-9767987 | MS.gene28147:CDS | 60.0% |
| !! | CGACGAAGCAGAGAGCACCC+AGG | - | chr4.4:9767967-9767986 | MS.gene28147:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9767960 | 9769564 | 9767960 | ID=MS.gene28147 |
| chr4.4 | mRNA | 9767960 | 9769564 | 9767960 | ID=MS.gene28147.t1;Parent=MS.gene28147 |
| chr4.4 | exon | 9769305 | 9769564 | 9769305 | ID=MS.gene28147.t1.exon1;Parent=MS.gene28147.t1 |
| chr4.4 | CDS | 9769305 | 9769564 | 9769305 | ID=cds.MS.gene28147.t1;Parent=MS.gene28147.t1 |
| chr4.4 | exon | 9768877 | 9768983 | 9768877 | ID=MS.gene28147.t1.exon2;Parent=MS.gene28147.t1 |
| chr4.4 | CDS | 9768877 | 9768983 | 9768877 | ID=cds.MS.gene28147.t1;Parent=MS.gene28147.t1 |
| chr4.4 | exon | 9768206 | 9768387 | 9768206 | ID=MS.gene28147.t1.exon3;Parent=MS.gene28147.t1 |
| chr4.4 | CDS | 9768206 | 9768387 | 9768206 | ID=cds.MS.gene28147.t1;Parent=MS.gene28147.t1 |
| chr4.4 | exon | 9767960 | 9768115 | 9767960 | ID=MS.gene28147.t1.exon4;Parent=MS.gene28147.t1 |
| chr4.4 | CDS | 9767960 | 9768115 | 9767960 | ID=cds.MS.gene28147.t1;Parent=MS.gene28147.t1 |
| Gene Sequence |
| Protein sequence |
