Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59319.t1 | XP_003611899.2 | 86.9 | 1006 | 108 | 4 | 1 | 982 | 1 | 1006 | 0.00E+00 | 1352.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59319.t1 | Q03701 | 32.8 | 693 | 369 | 15 | 164 | 835 | 202 | 818 | 1.3e-87 | 326.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59319.t1 | G7KAU4 | 86.9 | 1006 | 108 | 4 | 1 | 982 | 1 | 1006 | 0.0e+00 | 1352.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59319.t1 | MTR_5g019130 | 91.658 | 1007 | 60 | 4 | 1 | 983 | 1 | 1007 | 0.0 | 1698 |
| MS.gene59319.t1 | MTR_4g119670 | 90.637 | 1036 | 70 | 5 | 1 | 1013 | 1 | 1032 | 0.0 | 1674 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59319.t1 | AT1G72440 | 58.377 | 949 | 330 | 15 | 9 | 898 | 5 | 947 | 0.0 | 1030 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATACATACCTTCATATT+TGG | 0.109456 | 5.4:-11709346 | None:intergenic |
| TTAAAGCCAGACCACCTTTA+TGG | 0.167130 | 5.4:+11711542 | MS.gene59319:CDS |
| CCCTTCTACTTCTCTGGTAT+TGG | 0.192561 | 5.4:+11707687 | MS.gene59319:CDS |
| GAAAGTGGAGACGAAGAATT+TGG | 0.210658 | 5.4:+11706539 | MS.gene59319:CDS |
| TTAGATGCTGCTTTATTATC+TGG | 0.214487 | 5.4:-11709286 | None:intergenic |
| AACGATGCTAATAAGGAAAA+AGG | 0.223521 | 5.4:+11706402 | MS.gene59319:CDS |
| GATTTAGTGGCCGCTGTATC+AGG | 0.238783 | 5.4:-11707637 | None:intergenic |
| CCTTCTACTTCTCTGGTATT+GGG | 0.251704 | 5.4:+11707688 | MS.gene59319:CDS |
| CCATGCCAAGTGGTTTGTTT+TGG | 0.263037 | 5.4:-11713169 | None:intergenic |
| AGTGATGGAGAGATAGATAT+TGG | 0.265848 | 5.4:+11714020 | MS.gene59319:CDS |
| GTTAAAGAGAGGTCGTTTAA+AGG | 0.285273 | 5.4:-11713115 | None:intergenic |
| AGCTTGAAGGTAAGGTGATT+GGG | 0.290943 | 5.4:+11706508 | MS.gene59319:CDS |
| GAATGGCCATCTTTAGTTTC+AGG | 0.295687 | 5.4:-11707665 | None:intergenic |
| TTTCTCTTTCGGCCTCATTT+AGG | 0.298118 | 5.4:+11709750 | MS.gene59319:CDS |
| ATGGCAAGAACTCTTCTTTC+TGG | 0.301415 | 5.4:+11713067 | MS.gene59319:CDS |
| TCCTGGCAACACAGGCTTCT+TGG | 0.304033 | 5.4:-11712029 | None:intergenic |
| GATTCTGCTGATCCCACTTT+GGG | 0.305519 | 5.4:+11713924 | MS.gene59319:CDS |
| GGTGTTTGGTTTGAGGATGC+AGG | 0.306122 | 5.4:+11706483 | MS.gene59319:CDS |
| ATTAGACGTTTCGCTACTTT+TGG | 0.307380 | 5.4:-11710408 | None:intergenic |
| ATTGGGCAACGATGCTAATA+AGG | 0.312912 | 5.4:+11706395 | MS.gene59319:CDS |
| GACACAGAGAGCCATCTTAT+TGG | 0.314342 | 5.4:+11712065 | MS.gene59319:CDS |
| TCTTGCCTTGGATGTGTTCA+TGG | 0.322013 | 5.4:-11711189 | None:intergenic |
| ATCACTGGCTATCTGATTCT+TGG | 0.336231 | 5.4:-11711123 | None:intergenic |
| TGCTGCGGTTGTTGTTTCTT+TGG | 0.336909 | 5.4:-11706246 | None:intergenic |
| ATCGTTGAAACCTGAAGAAT+TGG | 0.341352 | 5.4:-11706202 | None:intergenic |
| GTGATGGAGAGATAGATATT+GGG | 0.345383 | 5.4:+11714021 | MS.gene59319:CDS |
| TGCGATTCTGAGAACTCTTC+GGG | 0.355171 | 5.4:-11710653 | None:intergenic |
| CAACTTCGTCTCACCAATAA+AGG | 0.356172 | 5.4:+11710378 | MS.gene59319:CDS |
| TGAAGAGTTTGAACATATAC+TGG | 0.359143 | 5.4:+11714238 | MS.gene59319:CDS |
| TGTAAGTTGGTGGGAGTTAT+TGG | 0.359624 | 5.4:+11713009 | MS.gene59319:CDS |
| GCCATTCCCTTCTACTTCTC+TGG | 0.360746 | 5.4:+11707681 | MS.gene59319:CDS |
| GGCAGCTGGAAGCAGGAGTT+TGG | 0.367926 | 5.4:-11711168 | None:intergenic |
| TGAAACCTGAAGAATTGGTT+TGG | 0.369361 | 5.4:-11706197 | None:intergenic |
| GTTGAGAAGAAGAGGGAGTT+GGG | 0.370926 | 5.4:+11706579 | MS.gene59319:CDS |
| AGCTTTCCTACATAAATTCA+TGG | 0.371801 | 5.4:+11713138 | MS.gene59319:CDS |
| GTATACATACCTTCATATTT+GGG | 0.371834 | 5.4:-11709345 | None:intergenic |
| CATCATCATCTTCCAGTATA+TGG | 0.372359 | 5.4:-11714283 | None:intergenic |
| TGACTATGATTATGATGATT+TGG | 0.374354 | 5.4:+11713956 | MS.gene59319:CDS |
| AATTCACTTGCTTTCATCAA+TGG | 0.379765 | 5.4:-11706459 | None:intergenic |
| GAGCTTGAAGGTAAGGTGAT+TGG | 0.383250 | 5.4:+11706507 | MS.gene59319:CDS |
| CTCAGAATCGCATGCGGAAA+TGG | 0.385808 | 5.4:+11710664 | MS.gene59319:CDS |
| CGGTTGTTGTTTCTTTGGTT+TGG | 0.388571 | 5.4:-11706241 | None:intergenic |
| GATGTCTTCTGTATTTATCA+AGG | 0.389413 | 5.4:-11706118 | None:intergenic |
| AGAAGAATCTGTGTCAGAAT+TGG | 0.390014 | 5.4:-11711852 | None:intergenic |
| CGACGATTTAGATGATGCTT+TGG | 0.391836 | 5.4:+11711913 | MS.gene59319:CDS |
| TCTTTGTTTACCTGCTTGAC+AGG | 0.392157 | 5.4:-11713208 | None:intergenic |
| GATAGATATACCCTCAGATA+TGG | 0.393332 | 5.4:+11714061 | MS.gene59319:CDS |
| GCTTCTTTCGCTTCTTCACT+TGG | 0.394653 | 5.4:+11706162 | MS.gene59319:CDS |
| TGAAGAATTGGTTTGGGAAG+TGG | 0.397678 | 5.4:-11706190 | None:intergenic |
| CCTGCTTAGTAGAACATATA+TGG | 0.402570 | 5.4:-11708348 | None:intergenic |
| TTAAAGAGAGGTCGTTTAAA+GGG | 0.402956 | 5.4:-11713114 | None:intergenic |
| GGATTCTGCTGATCCCACTT+TGG | 0.405499 | 5.4:+11713923 | MS.gene59319:CDS |
| CCCATCACTACTTACCATAA+AGG | 0.407345 | 5.4:-11711556 | None:intergenic |
| TGAAGAGATTGAGGATCTCT+TGG | 0.407389 | 5.4:+11713902 | MS.gene59319:CDS |
| ATGCGATTCTGAGAACTCTT+CGG | 0.409163 | 5.4:-11710654 | None:intergenic |
| GTTTCAGGAATGTGATTTAG+TGG | 0.415456 | 5.4:-11707650 | None:intergenic |
| GCTTTCATCAATGGAAGCTT+AGG | 0.417325 | 5.4:-11706450 | None:intergenic |
| CCCAATACCAGAGAAGTAGA+AGG | 0.419176 | 5.4:-11707688 | None:intergenic |
| AGGGTCTTCAATTTACAATC+TGG | 0.421781 | 5.4:-11707617 | None:intergenic |
| AACTCTTCATAACTTGCAAA+TGG | 0.423550 | 5.4:-11714224 | None:intergenic |
| AGAGACCTCAAATTTGCAAC+AGG | 0.424866 | 5.4:-11706744 | None:intergenic |
| ATAATCCTGTTGCAAATTTG+AGG | 0.425770 | 5.4:+11706739 | MS.gene59319:CDS |
| GGCATGGCGCTTTCCGACCT+TGG | 0.426298 | 5.4:-11706949 | None:intergenic |
| TGTTGAGAAGAAGAGGGAGT+TGG | 0.428215 | 5.4:+11706578 | MS.gene59319:CDS |
| TCGTTGCCCAATGACAAAAC+AGG | 0.435364 | 5.4:-11706384 | None:intergenic |
| ATTGATGAAAGCAAGTGAAT+TGG | 0.435756 | 5.4:+11706461 | MS.gene59319:CDS |
| ATCTTAACAACCTCTTGGTT+GGG | 0.438196 | 5.4:+11713688 | MS.gene59319:CDS |
| TGGTCTGGCTTTAAATAGTT+CGG | 0.438901 | 5.4:-11711533 | None:intergenic |
| GGAAAGCGCCATGCCTTGTC+AGG | 0.439091 | 5.4:+11706957 | MS.gene59319:CDS |
| GCTTCTATCAGCTCTCTTAA+CGG | 0.441332 | 5.4:+11710694 | MS.gene59319:CDS |
| ACTTCCCAAACCAATTCTTC+AGG | 0.446083 | 5.4:+11706192 | MS.gene59319:CDS |
| TTGATTTCTACTCAGAGGTC+TGG | 0.448923 | 5.4:+11706672 | MS.gene59319:CDS |
| AAAGTGGAGACGAAGAATTT+GGG | 0.449858 | 5.4:+11706540 | MS.gene59319:CDS |
| AAGCAAGTGAATTGGGTGTT+TGG | 0.451712 | 5.4:+11706469 | MS.gene59319:CDS |
| TTAGAGCTGGTAGCATGTCT+CGG | 0.455681 | 5.4:-11708036 | None:intergenic |
| GAAACCTGAAGAATTGGTTT+GGG | 0.456168 | 5.4:-11706196 | None:intergenic |
| TACTTACCATAAAGGTGGTC+TGG | 0.457202 | 5.4:-11711548 | None:intergenic |
| GATTGGGGAAGGGAAGAAAG+TGG | 0.458607 | 5.4:+11706524 | MS.gene59319:CDS |
| CGATTTAGATGATGCTTTGG+AGG | 0.458661 | 5.4:+11711916 | MS.gene59319:CDS |
| TGAATTGGGTGTTTGGTTTG+AGG | 0.459108 | 5.4:+11706476 | MS.gene59319:CDS |
| GTGTTTGGTTTGAGGATGCA+GGG | 0.463351 | 5.4:+11706484 | MS.gene59319:CDS |
| GCCAAGAAGCCTGTGTTGCC+AGG | 0.463932 | 5.4:+11712028 | MS.gene59319:CDS |
| GATCTTAACAACCTCTTGGT+TGG | 0.466679 | 5.4:+11713687 | MS.gene59319:CDS |
| TGCTGAGAAAGACCATATAC+TGG | 0.469118 | 5.4:+11714271 | MS.gene59319:CDS |
| ATGTCTTCTGTATTTATCAA+GGG | 0.469129 | 5.4:-11706117 | None:intergenic |
| GAAGGTAAGGTGATTGGGGA+AGG | 0.470403 | 5.4:+11706513 | MS.gene59319:CDS |
| TTATTCTAAGAGCAATGAAA+AGG | 0.470835 | 5.4:+11711323 | MS.gene59319:CDS |
| TAGAGCTGGTAGCATGTCTC+GGG | 0.472971 | 5.4:-11708035 | None:intergenic |
| TCATCATCAATGGCAGCAAA+TGG | 0.472981 | 5.4:-11714107 | None:intergenic |
| CTTTAAATAGTTCGGAAAGA+AGG | 0.474046 | 5.4:-11711525 | None:intergenic |
| GGTTTATTTGATACCGCTAC+AGG | 0.475221 | 5.4:-11711791 | None:intergenic |
| AAGAAGCTACTTCAGATTTG+AGG | 0.477305 | 5.4:-11706146 | None:intergenic |
| TCAGCTAGTGAAAGAATCTC+TGG | 0.477758 | 5.4:-11713711 | None:intergenic |
| GAGGATGCAGGGGAGCTTGA+AGG | 0.478332 | 5.4:+11706495 | MS.gene59319:CDS |
| ATTGATGGCACAATTTGCTC+AGG | 0.481174 | 5.4:+11706608 | MS.gene59319:CDS |
| TGTTCATGGCAGCTGGAAGC+AGG | 0.484577 | 5.4:-11711175 | None:intergenic |
| AAGATCATTGTCATCATCAA+TGG | 0.485664 | 5.4:-11714117 | None:intergenic |
| TTGGATGTGTTCATGGCAGC+TGG | 0.486545 | 5.4:-11711182 | None:intergenic |
| TCGACTGTTTGATTGTTGCT+TGG | 0.487407 | 5.4:-11710596 | None:intergenic |
| GGGAGGAATGTTTGAAGCAG+AGG | 0.487467 | 5.4:+11707708 | MS.gene59319:CDS |
| TGCAGGGGAGCTTGAAGGTA+AGG | 0.488418 | 5.4:+11706500 | MS.gene59319:CDS |
| GTCTCAGCACCCAAATATGA+AGG | 0.489977 | 5.4:+11709336 | MS.gene59319:CDS |
| TTATGGAAAACAAGATCCTC+TGG | 0.491214 | 5.4:-11713747 | None:intergenic |
| TTCAAGAATTATTTATTGCA+AGG | 0.492952 | 5.4:+11706991 | MS.gene59319:CDS |
| GCAGTGTCACCATTCTGAAC+AGG | 0.493228 | 5.4:-11711830 | None:intergenic |
| CCATATATGTTCTACTAAGC+AGG | 0.500018 | 5.4:+11708348 | MS.gene59319:CDS |
| TTAGATGATGCTTTGGAGGA+TGG | 0.502125 | 5.4:+11711920 | MS.gene59319:CDS |
| CGCATGCGGAAATGGACTCC+AGG | 0.503770 | 5.4:+11710672 | MS.gene59319:CDS |
| GATGGATCTTAACAACCTCT+TGG | 0.505417 | 5.4:+11713683 | MS.gene59319:intron |
| TTGATGAAAGCAAGTGAATT+GGG | 0.509804 | 5.4:+11706462 | MS.gene59319:CDS |
| CTTTATTGGTGAGACGAAGT+TGG | 0.511857 | 5.4:-11710377 | None:intergenic |
| CTCAGGATTATGAATCGACT+AGG | 0.512023 | 5.4:+11706625 | MS.gene59319:CDS |
| CAAGCAAATTACCAATAAGA+TGG | 0.512274 | 5.4:-11712076 | None:intergenic |
| ATTTAGTGGCCGCTGTATCA+GGG | 0.516236 | 5.4:-11707636 | None:intergenic |
| GGAGTTGGGTGAGAGATTGA+TGG | 0.518698 | 5.4:+11706593 | MS.gene59319:CDS |
| TCATAATCATAGTCACCGTC+TGG | 0.518817 | 5.4:-11713948 | None:intergenic |
| AGACGAAGAATTTGGGAGAG+TGG | 0.521453 | 5.4:+11706547 | MS.gene59319:CDS |
| GCTTCATCACTCGAGACAAA+AGG | 0.522287 | 5.4:-11710912 | None:intergenic |
| CACATTCCTGAAACTAAAGA+TGG | 0.523231 | 5.4:+11707659 | MS.gene59319:CDS |
| TGATGGAGAGATAGATATTG+GGG | 0.523914 | 5.4:+11714022 | MS.gene59319:CDS |
| AAGAATTTGGGAGAGTGGAA+AGG | 0.524777 | 5.4:+11706552 | MS.gene59319:CDS |
| GAGGATGATGATGACTTGAT+TGG | 0.530506 | 5.4:+11713990 | MS.gene59319:CDS |
| GCTTGAAGGTAAGGTGATTG+GGG | 0.531413 | 5.4:+11706509 | MS.gene59319:CDS |
| TCAGATTGAACCTGTCAAGC+AGG | 0.533611 | 5.4:+11713198 | MS.gene59319:CDS |
| TAAGAGAGCTGATAGAAGCC+TGG | 0.534189 | 5.4:-11710690 | None:intergenic |
| CTTCAAAGCCTGACAAGGCA+TGG | 0.535279 | 5.4:-11706965 | None:intergenic |
| AAGTGATAATGAAGAGATTG+AGG | 0.536700 | 5.4:+11713893 | MS.gene59319:CDS |
| TATTCTAAGAGCAATGAAAA+GGG | 0.541088 | 5.4:+11711324 | MS.gene59319:CDS |
| ACTACCAATTGGAAAAGTAC+TGG | 0.542174 | 5.4:-11710960 | None:intergenic |
| GGCTGTGGTTGTTAATGAGG+TGG | 0.544078 | 5.4:+11709722 | MS.gene59319:intron |
| TATTTGGGTGCTGAGACAAA+AGG | 0.545659 | 5.4:-11709330 | None:intergenic |
| ATGCAGATCGTGTAAGTTGG+TGG | 0.548231 | 5.4:+11712999 | MS.gene59319:CDS |
| ATAGTTCGGAAAGAAGGAAA+AGG | 0.550072 | 5.4:-11711519 | None:intergenic |
| AACAGTCGATAAAAGCGGTA+AGG | 0.550775 | 5.4:+11710610 | MS.gene59319:CDS |
| ATCATCCTCTTCCATATCTG+AGG | 0.556175 | 5.4:-11714072 | None:intergenic |
| AAGGTAAGGTGATTGGGGAA+GGG | 0.556243 | 5.4:+11706514 | MS.gene59319:CDS |
| GCAGGCTGTGGTTGTTAATG+AGG | 0.559465 | 5.4:+11709719 | MS.gene59319:intron |
| TCAGGATTATGAATCGACTA+GGG | 0.563004 | 5.4:+11706626 | MS.gene59319:CDS |
| GTTTCCGTTGTAGACAATGT+TGG | 0.564024 | 5.4:-11713092 | None:intergenic |
| TTGAACATCAATGATGTCAT+CGG | 0.564271 | 5.4:-11710934 | None:intergenic |
| TGTCGTGGATCATAGCCTCC+TGG | 0.567265 | 5.4:-11712046 | None:intergenic |
| CGTTGCCCAATGACAAAACA+GGG | 0.569601 | 5.4:-11706383 | None:intergenic |
| CGTCTCACCAATAAAGGAGA+TGG | 0.570373 | 5.4:+11710384 | MS.gene59319:CDS |
| CTTGCCATGGTGGCAACTGA+AGG | 0.572750 | 5.4:-11713052 | None:intergenic |
| AAGAAGGAAAAGGCATGCAC+AGG | 0.573490 | 5.4:-11711509 | None:intergenic |
| CCAAAACAAACCACTTGGCA+TGG | 0.574328 | 5.4:+11713169 | MS.gene59319:CDS |
| GCAATGCAGATCGTGTAAGT+TGG | 0.578502 | 5.4:+11712996 | MS.gene59319:intron |
| TCTGTTGCCTCAGATATGAA+CGG | 0.580468 | 5.4:+11707987 | MS.gene59319:intron |
| TCATAGCCTCCTGGCAACAC+AGG | 0.581936 | 5.4:-11712037 | None:intergenic |
| TGCAGATCGTGTAAGTTGGT+GGG | 0.584256 | 5.4:+11713000 | MS.gene59319:CDS |
| GATGGCGATGATGAGGTTGA+TGG | 0.584331 | 5.4:+11713861 | MS.gene59319:CDS |
| TTGATTGGTGATGTTAGTGA+TGG | 0.587595 | 5.4:+11714005 | MS.gene59319:CDS |
| TCTACTTCTCTGGTATTGGG+AGG | 0.588900 | 5.4:+11707691 | MS.gene59319:CDS |
| AAGTGCTTCAAAGCCTGACA+AGG | 0.591722 | 5.4:-11706970 | None:intergenic |
| TGTCCGCGTGGTCCTAAATG+AGG | 0.594661 | 5.4:-11709762 | None:intergenic |
| TTGCCATGGTGGCAACTGAA+GGG | 0.599154 | 5.4:-11713051 | None:intergenic |
| TATACCCTCAGATATGGAAG+AGG | 0.600500 | 5.4:+11714067 | MS.gene59319:CDS |
| AGCTGGTAGCATGTCTCGGG+AGG | 0.600878 | 5.4:-11708032 | None:intergenic |
| TCTAGGAATGGTGACATCCA+AGG | 0.600998 | 5.4:+11706932 | MS.gene59319:intron |
| AGGCATGCACAGGCATATTG+TGG | 0.601846 | 5.4:-11711499 | None:intergenic |
| AGCACGGTAAAATCGATCAC+TGG | 0.602678 | 5.4:-11711138 | None:intergenic |
| AGATGTTGATTTCTACTCAG+AGG | 0.603125 | 5.4:+11706667 | MS.gene59319:CDS |
| TGATTTGGAAGTAGCTAATG+AGG | 0.609378 | 5.4:+11713971 | MS.gene59319:CDS |
| CCAATACCAGAGAAGTAGAA+GGG | 0.611596 | 5.4:-11707687 | None:intergenic |
| TAAGATGGCTCTCTGTGTCG+TGG | 0.612359 | 5.4:-11712061 | None:intergenic |
| ACCAGAGAAGTAGAAGGGAA+TGG | 0.613560 | 5.4:-11707682 | None:intergenic |
| GGCGATGATGAGGTTGATGG+TGG | 0.613658 | 5.4:+11713864 | MS.gene59319:CDS |
| TGATGCTGATGGCGATGATG+AGG | 0.614078 | 5.4:+11713854 | MS.gene59319:CDS |
| AAGAAGAGTTCTTGCCATGG+TGG | 0.620006 | 5.4:-11713062 | None:intergenic |
| TCATCCTCTTCCATATCTGA+GGG | 0.623798 | 5.4:-11714071 | None:intergenic |
| TCACCGTCTGGTCCCAAAGT+GGG | 0.623980 | 5.4:-11713936 | None:intergenic |
| GATGACAATGATCTTGACAT+AGG | 0.624826 | 5.4:+11714125 | MS.gene59319:CDS |
| TGTTTGGTTTGAGGATGCAG+GGG | 0.624996 | 5.4:+11706485 | MS.gene59319:CDS |
| ACACCCTTCAGTTGCCACCA+TGG | 0.625272 | 5.4:+11713048 | MS.gene59319:CDS |
| AAGCTACTTCAGATTTGAGG+AGG | 0.625454 | 5.4:-11706143 | None:intergenic |
| AAACAAACCACTTGGCATGG+TGG | 0.630983 | 5.4:+11713172 | MS.gene59319:CDS |
| AATTGAAGACCCTGATACAG+CGG | 0.631384 | 5.4:+11707627 | MS.gene59319:CDS |
| GAGTTTGAACATATACTGGA+AGG | 0.631951 | 5.4:+11714242 | MS.gene59319:CDS |
| AAGGTTGGACAAGTGATAGT+CGG | 0.636604 | 5.4:-11709311 | None:intergenic |
| ACAGGTAGAATATCACCACT+TGG | 0.636825 | 5.4:-11711812 | None:intergenic |
| GATATTCTACCTGTTCAGAA+TGG | 0.637554 | 5.4:+11711821 | MS.gene59319:CDS |
| GATCCCACTTTGGGACCAGA+CGG | 0.640420 | 5.4:+11713933 | MS.gene59319:CDS |
| AATCAAACAGTCGATAAAAG+CGG | 0.643176 | 5.4:+11710605 | MS.gene59319:CDS |
| TGGGTGCTGAGACAAAAGGT+TGG | 0.644567 | 5.4:-11709326 | None:intergenic |
| AGCTGCCATGAACACATCCA+AGG | 0.656639 | 5.4:+11711184 | MS.gene59319:CDS |
| GTAGGAAAGCTGTTAAAGAG+AGG | 0.657147 | 5.4:-11713126 | None:intergenic |
| GTCACCGTCTGGTCCCAAAG+TGG | 0.658221 | 5.4:-11713937 | None:intergenic |
| GAATCTCTGGCCCAACCAAG+AGG | 0.658588 | 5.4:-11713698 | None:intergenic |
| ATCACTACTTACCATAAAGG+TGG | 0.659598 | 5.4:-11711553 | None:intergenic |
| CTGAGAACCACCATGCCAAG+TGG | 0.660533 | 5.4:-11713179 | None:intergenic |
| GGAGTTTGGAGTACAAAGCA+CGG | 0.662469 | 5.4:-11711154 | None:intergenic |
| TCATTTGTCATATAGGAACA+CGG | 0.665736 | 5.4:+11711697 | MS.gene59319:intron |
| TTGCCCAATGACAAAACAGG+GGG | 0.666032 | 5.4:-11706381 | None:intergenic |
| AGAAAGAAGAGTTCTTGCCA+TGG | 0.667608 | 5.4:-11713065 | None:intergenic |
| AACTGATGAGAAACCTGTAG+CGG | 0.669244 | 5.4:+11711778 | MS.gene59319:CDS |
| GCGGTATCAAATAAACCAAG+TGG | 0.673464 | 5.4:+11711797 | MS.gene59319:CDS |
| GGAATGGTGACATCCAAGGT+CGG | 0.678165 | 5.4:+11706936 | MS.gene59319:intron |
| AAGAAGCCTGTGTTGCCAGG+AGG | 0.688295 | 5.4:+11712031 | MS.gene59319:CDS |
| TGAAGTAGATGTACCACCAG+AGG | 0.689164 | 5.4:+11713731 | MS.gene59319:CDS |
| TGGAAAACAAGATCCTCTGG+TGG | 0.690247 | 5.4:-11713744 | None:intergenic |
| GGTGCCAACATTGTCTACAA+CGG | 0.690732 | 5.4:+11713088 | MS.gene59319:CDS |
| CAGGATTATGAATCGACTAG+GGG | 0.692459 | 5.4:+11706627 | MS.gene59319:CDS |
| CATGCACAGGCATATTGTGG+TGG | 0.703827 | 5.4:-11711496 | None:intergenic |
| ACAGAATGGTATTGTCCGCG+TGG | 0.707084 | 5.4:-11709774 | None:intergenic |
| AGAGTTCTCAGAATCGCATG+CGG | 0.710557 | 5.4:+11710658 | MS.gene59319:CDS |
| GTTGCCCAATGACAAAACAG+GGG | 0.754962 | 5.4:-11706382 | None:intergenic |
| CGGCCTCATTTAGGACCACG+CGG | 0.757705 | 5.4:+11709759 | MS.gene59319:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11706090 | 11714370 | 11706090 | ID=MS.gene59319 |
| chr5.4 | mRNA | 11706090 | 11714370 | 11706090 | ID=MS.gene59319.t1;Parent=MS.gene59319 |
| chr5.4 | exon | 11706090 | 11706780 | 11706090 | ID=MS.gene59319.t1.exon1;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11706090 | 11706780 | 11706090 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11706937 | 11707012 | 11706937 | ID=MS.gene59319.t1.exon2;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11706937 | 11707012 | 11706937 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11707610 | 11707729 | 11707610 | ID=MS.gene59319.t1.exon3;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11707610 | 11707729 | 11707610 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11708000 | 11708075 | 11708000 | ID=MS.gene59319.t1.exon4;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11708000 | 11708075 | 11708000 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11708347 | 11708415 | 11708347 | ID=MS.gene59319.t1.exon5;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11708347 | 11708415 | 11708347 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11709277 | 11709357 | 11709277 | ID=MS.gene59319.t1.exon6;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11709277 | 11709357 | 11709277 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11709723 | 11709794 | 11709723 | ID=MS.gene59319.t1.exon7;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11709723 | 11709794 | 11709723 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11710363 | 11710455 | 11710363 | ID=MS.gene59319.t1.exon8;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11710363 | 11710455 | 11710363 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11710581 | 11710715 | 11710581 | ID=MS.gene59319.t1.exon9;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11710581 | 11710715 | 11710581 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11710894 | 11710977 | 11710894 | ID=MS.gene59319.t1.exon10;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11710894 | 11710977 | 11710894 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11711062 | 11711205 | 11711062 | ID=MS.gene59319.t1.exon11;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11711062 | 11711205 | 11711062 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11711304 | 11711393 | 11711304 | ID=MS.gene59319.t1.exon12;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11711304 | 11711393 | 11711304 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11711481 | 11711563 | 11711481 | ID=MS.gene59319.t1.exon13;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11711481 | 11711563 | 11711481 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11711712 | 11712086 | 11711712 | ID=MS.gene59319.t1.exon14;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11711712 | 11712086 | 11711712 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11712997 | 11713219 | 11712997 | ID=MS.gene59319.t1.exon15;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11712997 | 11713219 | 11712997 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11713684 | 11713789 | 11713684 | ID=MS.gene59319.t1.exon16;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11713684 | 11713789 | 11713684 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| chr5.4 | exon | 11713847 | 11714370 | 11713847 | ID=MS.gene59319.t1.exon17;Parent=MS.gene59319.t1 |
| chr5.4 | CDS | 11713847 | 11714370 | 11713847 | ID=cds.MS.gene59319.t1;Parent=MS.gene59319.t1 |
| Gene Sequence |
| Protein sequence |
