Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58173.t1 | ACJ84110.1 | 98.7 | 234 | 3 | 0 | 1 | 234 | 1 | 234 | 1.30E-124 | 455.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58173.t1 | Q9C9C5 | 81.5 | 232 | 43 | 0 | 3 | 234 | 2 | 233 | 3.2e-103 | 375.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58173.t1 | B7FH81 | 98.7 | 234 | 3 | 0 | 1 | 234 | 1 | 234 | 9.5e-125 | 455.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049306 | MS.gene58173 | 0.895201 | 1.20E-75 | -1.69E-46 |
MS.gene049387 | MS.gene58173 | 0.860388 | 2.14E-63 | -1.69E-46 |
MS.gene050134 | MS.gene58173 | 0.855427 | 6.36E-62 | -1.69E-46 |
MS.gene051925 | MS.gene58173 | 0.90894 | 9.86E-82 | -1.69E-46 |
MS.gene051927 | MS.gene58173 | 0.883139 | 5.78E-71 | -1.69E-46 |
MS.gene052666 | MS.gene58173 | 0.879469 | 1.22E-69 | -1.69E-46 |
MS.gene053224 | MS.gene58173 | 0.802515 | 5.41E-49 | -1.69E-46 |
MS.gene057237 | MS.gene58173 | 0.819394 | 1.19E-52 | -1.69E-46 |
MS.gene057272 | MS.gene58173 | 0.858141 | 1.01E-62 | -1.69E-46 |
MS.gene057321 | MS.gene58173 | 0.856841 | 2.45E-62 | -1.69E-46 |
MS.gene057641 | MS.gene58173 | 0.822885 | 1.86E-53 | -1.69E-46 |
MS.gene057643 | MS.gene58173 | 0.865986 | 3.96E-65 | -1.69E-46 |
MS.gene059340 | MS.gene58173 | 0.887355 | 1.53E-72 | -1.69E-46 |
MS.gene060483 | MS.gene58173 | 0.843666 | 1.22E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene045180 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene035331 | PPI |
MS.gene27648 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene42910 | PPI |
MS.gene036487 | MS.gene58173 | PPI |
MS.gene047734 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene030719 | PPI |
MS.gene010453 | MS.gene58173 | PPI |
MS.gene013401 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene52173 | PPI |
MS.gene58173 | MS.gene75537 | PPI |
MS.gene58173 | MS.gene81197 | PPI |
MS.gene58173 | MS.gene28147 | PPI |
MS.gene59319 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene31039 | PPI |
MS.gene58173 | MS.gene73008 | PPI |
MS.gene042025 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene067072 | PPI |
MS.gene049376 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene023799 | PPI |
MS.gene58173 | MS.gene31056 | PPI |
MS.gene06501 | MS.gene58173 | PPI |
MS.gene42236 | MS.gene58173 | PPI |
MS.gene28147 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene041557 | PPI |
MS.gene06481 | MS.gene58173 | PPI |
MS.gene58173 | MS.gene70316 | PPI |
MS.gene70551 | MS.gene58173 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58173.t1 | MTR_5g098090 | 96.581 | 234 | 8 | 0 | 1 | 234 | 1 | 234 | 2.94e-163 | 450 |
MS.gene58173.t1 | MTR_8g091910 | 92.308 | 234 | 3 | 1 | 1 | 234 | 1 | 219 | 1.91e-152 | 422 |
MS.gene58173.t1 | MTR_3g094570 | 86.325 | 234 | 31 | 1 | 1 | 234 | 1 | 233 | 2.13e-145 | 405 |
MS.gene58173.t1 | MTR_3g094860 | 86.325 | 234 | 31 | 1 | 1 | 234 | 1 | 233 | 5.65e-145 | 404 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58173.t1 | AT1G74050 | 81.466 | 232 | 43 | 0 | 3 | 234 | 2 | 233 | 2.72e-122 | 347 |
MS.gene58173.t1 | AT1G74060 | 80.603 | 232 | 45 | 0 | 3 | 234 | 2 | 233 | 1.30e-120 | 343 |
MS.gene58173.t1 | AT1G18540 | 78.879 | 232 | 49 | 0 | 3 | 234 | 2 | 233 | 1.07e-115 | 330 |
Find 57 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCTTGCCGGTAGATTTA+AGG | 0.142019 | 4.2:-10220810 | MS.gene58173:CDS |
CCAATTCCTCTGATCAAATC+AGG | 0.248411 | 4.2:+10221369 | None:intergenic |
TCATCAGCAGGGTAAAATTT+TGG | 0.250055 | 4.2:+10221225 | None:intergenic |
TCTGGATTGCTTCTTGTAAC+TGG | 0.291952 | 4.2:-10220755 | MS.gene58173:intron |
CCTGATTTGATCAGAGGAAT+TGG | 0.319315 | 4.2:-10221369 | MS.gene58173:CDS |
TCAACAGCAGTTTCGGGCTT+AGG | 0.337911 | 4.2:+10221255 | None:intergenic |
GCAGTTTCGGGCTTAGGTTT+AGG | 0.345228 | 4.2:+10221261 | None:intergenic |
TCCTTTGAGACGTGTGAATC+AGG | 0.346287 | 4.2:-10220221 | MS.gene58173:CDS |
GAAAGGTATCTGGGCTATTA+AGG | 0.349673 | 4.2:-10221316 | MS.gene58173:CDS |
TGTATCACAAGAAAGGTATC+TGG | 0.350934 | 4.2:-10221326 | MS.gene58173:CDS |
CTCTGATCAAATCAGGGTTT+CGG | 0.358025 | 4.2:+10221376 | None:intergenic |
CTTCTTGCCGGTAGATTTAA+GGG | 0.364740 | 4.2:-10220809 | MS.gene58173:CDS |
CCAGACTTGAAGACTTATCT+TGG | 0.410256 | 4.2:-10219890 | MS.gene58173:CDS |
CCAAGATAAGTCTTCAAGTC+TGG | 0.428069 | 4.2:+10219890 | None:intergenic |
TTGAAAAGTACTTGTCATCA+AGG | 0.430348 | 4.2:+10220143 | None:intergenic |
ACAGTGCTGATTCTTCTTGC+CGG | 0.435264 | 4.2:-10220821 | MS.gene58173:CDS |
CGAATTCTTTGAGTCAGATA+AGG | 0.457015 | 4.2:-10220086 | MS.gene58173:CDS |
GGCTTCTTCACATCATCAGC+AGG | 0.465308 | 4.2:+10221213 | None:intergenic |
TGAAGACTTATCTTGGTGCC+AGG | 0.466625 | 4.2:-10219883 | MS.gene58173:CDS |
AAGAAGAATCAGCACTGTGC+CGG | 0.476099 | 4.2:+10220826 | None:intergenic |
AACACCGGAGATATCGACTT+TGG | 0.477360 | 4.2:+10220177 | None:intergenic |
ACCTGCCTTGAGAGAAAACC+TGG | 0.493075 | 4.2:+10219865 | None:intergenic |
ATCAGGGTTTCGGCTAACCC+TGG | 0.499591 | 4.2:+10221386 | None:intergenic |
TGGTCATCTTTCTTCTGCTG+AGG | 0.501451 | 4.2:+10219956 | None:intergenic |
AGAAGAATCAGCACTGTGCC+GGG | 0.513749 | 4.2:+10220827 | None:intergenic |
CAATTCCTCTGATCAAATCA+GGG | 0.517272 | 4.2:+10221370 | None:intergenic |
AGGAACTCCGTTGATCTTGA+AGG | 0.517314 | 4.2:+10220240 | None:intergenic |
CGATATCTCCGGTGTTAATG+TGG | 0.532682 | 4.2:-10220170 | MS.gene58173:CDS |
GTGAATCAGGCCTATGTGAT+TGG | 0.535696 | 4.2:-10220208 | MS.gene58173:CDS |
CTGGGTGCTCTCTGCTTCGT+CGG | 0.540977 | 4.2:+10221405 | None:intergenic |
TCACAGATGTATCACAAGAA+AGG | 0.542107 | 4.2:-10221333 | MS.gene58173:CDS |
TTCAGGGCAAGCATCACTCC+CGG | 0.546234 | 4.2:-10220845 | MS.gene58173:intron |
CCTCTTGCCCTTAAATCTAC+CGG | 0.549567 | 4.2:+10220802 | None:intergenic |
GTATCACAAGAAAGGTATCT+GGG | 0.554030 | 4.2:-10221325 | MS.gene58173:CDS |
GGCTTATGCTTGTTGCGAAG+AGG | 0.566563 | 4.2:+10221192 | None:intergenic |
AGCCTAAGCAGACTAAGCTC+AGG | 0.567914 | 4.2:-10221173 | MS.gene58173:intron |
TCAGGGTTTCGGCTAACCCT+GGG | 0.568120 | 4.2:+10221387 | None:intergenic |
CGAAACCCTGATTTGATCAG+AGG | 0.574541 | 4.2:-10221375 | MS.gene58173:CDS |
CGGTAGATTTAAGGGCAAGA+GGG | 0.577532 | 4.2:-10220801 | MS.gene58173:CDS |
GCCTGATTCACACGTCTCAA+AGG | 0.578175 | 4.2:+10220220 | None:intergenic |
TCAACCAAAGTCGATATCTC+CGG | 0.580594 | 4.2:-10220181 | MS.gene58173:CDS |
CCGGTAGATTTAAGGGCAAG+AGG | 0.581183 | 4.2:-10220802 | MS.gene58173:CDS |
AACCTGAGCTTAGTCTGCTT+AGG | 0.583716 | 4.2:+10221171 | None:intergenic |
GGAACTCCGTTGATCTTGAA+GGG | 0.585587 | 4.2:+10220241 | None:intergenic |
GGTTGATGTACCAATCACAT+AGG | 0.591225 | 4.2:+10220198 | None:intergenic |
GACGAAGCAGAGAGCACCCA+GGG | 0.611105 | 4.2:-10221403 | MS.gene58173:CDS |
AACTAGAAGACGAGTTCGTG+TGG | 0.615065 | 4.2:+10219836 | None:intergenic |
TCAGGTCCCTTCAAGATCAA+CGG | 0.616664 | 4.2:-10220247 | MS.gene58173:intron |
ATTCTTTGAGTCAGATAAGG+AGG | 0.630746 | 4.2:-10220083 | MS.gene58173:intron |
TAGATTTAAGGGCAAGAGGG+TGG | 0.640763 | 4.2:-10220798 | MS.gene58173:CDS |
GTTACAAGAAGCAATCCAGA+AGG | 0.643198 | 4.2:+10220758 | None:intergenic |
CGACGAAGCAGAGAGCACCC+AGG | 0.649766 | 4.2:-10221404 | MS.gene58173:CDS |
GCTTCTTCACATCATCAGCA+GGG | 0.669182 | 4.2:+10221214 | None:intergenic |
AAGGTTATCCACATTAACAC+CGG | 0.677708 | 4.2:+10220162 | None:intergenic |
TTAGGTTTAGGATCATGACG+AGG | 0.681191 | 4.2:+10221273 | None:intergenic |
TAGGTTTAGGATCATGACGA+GGG | 0.683516 | 4.2:+10221274 | None:intergenic |
GAAAGATGACCAGAAAACAG+TGG | 0.686525 | 4.2:-10219945 | MS.gene58173:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACATGATTTTGATATTATTT+GGG | - | chr4.2:10220276-10220295 | MS.gene58173:intron | 15.0% |
!!! | TACATGATTTTGATATTATT+TGG | - | chr4.2:10220275-10220294 | MS.gene58173:intron | 15.0% |
!! | AAGATCAGAAATTTAATTGA+TGG | + | chr4.2:10220590-10220609 | None:intergenic | 20.0% |
!! | AATATCAAAATCATGTACAA+AGG | + | chr4.2:10220272-10220291 | None:intergenic | 20.0% |
!!! | CAGTTATTCTTATCATTTTA+CGG | - | chr4.2:10220125-10220144 | MS.gene58173:CDS | 20.0% |
!!! | TCTTATTCTTTTTATGTACT+AGG | - | chr4.2:10220606-10220625 | MS.gene58173:intron | 20.0% |
!!! | TGTTTTTTATTTTTGATTGC+AGG | - | chr4.2:10221256-10221275 | MS.gene58173:CDS | 20.0% |
!!! | TTTTGATATTATTTGGGATA+TGG | - | chr4.2:10220282-10220301 | MS.gene58173:intron | 20.0% |
! | TCACCTAAAATAACAAATAC+TGG | + | chr4.2:10220247-10220266 | None:intergenic | 25.0% |
!!! | AATCACTTTTGTTTTGTGTT+GGG | - | chr4.2:10220370-10220389 | MS.gene58173:intron | 25.0% |
!!! | CAACCAGTATTTGTTATTTT+AGG | - | chr4.2:10220241-10220260 | MS.gene58173:CDS | 25.0% |
!!! | TAATCACTTTTGTTTTGTGT+TGG | - | chr4.2:10220369-10220388 | MS.gene58173:intron | 25.0% |
AGAAATGTTGACGAGATATA+AGG | - | chr4.2:10220640-10220659 | MS.gene58173:intron | 30.0% | |
GAAATGTTGACGAGATATAA+GGG | - | chr4.2:10220641-10220660 | MS.gene58173:intron | 30.0% | |
GATGTCAACATTGAATATCA+TGG | - | chr4.2:10220904-10220923 | MS.gene58173:intron | 30.0% | |
TATTCAATGTTGACATCAGT+TGG | + | chr4.2:10220901-10220920 | None:intergenic | 30.0% | |
TTTGTTGCTCTTGATTGATA+AGG | - | chr4.2:10220536-10220555 | MS.gene58173:intron | 30.0% | |
! | ACAGTGTTCTTTGTGTTATT+TGG | - | chr4.2:10220183-10220202 | MS.gene58173:CDS | 30.0% |
! | TGATGACAAGTACTTTTCAA+AGG | - | chr4.2:10221109-10221128 | MS.gene58173:intron | 30.0% |
! | TTTTTCTTACTTTGCATCTC+AGG | - | chr4.2:10220984-10221003 | MS.gene58173:intron | 30.0% |
!! | ACATAAGTTTTGTCACTGTT+TGG | + | chr4.2:10220807-10220826 | None:intergenic | 30.0% |
!! | CAGTGTTCTTTGTGTTATTT+GGG | - | chr4.2:10220184-10220203 | MS.gene58173:CDS | 30.0% |
!! | CATAAGTTTTGTCACTGTTT+GGG | + | chr4.2:10220806-10220825 | None:intergenic | 30.0% |
!! | TTGAAAAGTACTTGTCATCA+AGG | + | chr4.2:10221109-10221128 | None:intergenic | 30.0% |
!! | TTTGTGTTATTTGGGATTAC+TGG | - | chr4.2:10220192-10220211 | MS.gene58173:CDS | 30.0% |
!! | TTTTTGATTGCAGGAGAAAA+AGG | - | chr4.2:10221265-10221284 | MS.gene58173:CDS | 30.0% |
AAGGTTATCCACATTAACAC+CGG | + | chr4.2:10221090-10221109 | None:intergenic | 35.0% | |
ATTCTTTGAGTCAGATAAGG+AGG | - | chr4.2:10221166-10221185 | MS.gene58173:intron | 35.0% | |
CAATTCCTCTGATCAAATCA+GGG | + | chr4.2:10219882-10219901 | None:intergenic | 35.0% | |
CGAATTCTTTGAGTCAGATA+AGG | - | chr4.2:10221163-10221182 | MS.gene58173:intron | 35.0% | |
TCACAGATGTATCACAAGAA+AGG | - | chr4.2:10219916-10219935 | MS.gene58173:CDS | 35.0% | |
! | TCATCAGCAGGGTAAAATTT+TGG | + | chr4.2:10220027-10220046 | None:intergenic | 35.0% |
!! | GTATCACAAGAAAGGTATCT+GGG | - | chr4.2:10219924-10219943 | MS.gene58173:CDS | 35.0% |
!! | TGGTTTTTCAACAGCAGTTT+CGG | + | chr4.2:10220004-10220023 | None:intergenic | 35.0% |
!! | TGTATCACAAGAAAGGTATC+TGG | - | chr4.2:10219923-10219942 | MS.gene58173:CDS | 35.0% |
!!! | TTGGGTCTTTTTTGTCTTCA+GGG | - | chr4.2:10220388-10220407 | MS.gene58173:intron | 35.0% |
AAAAAGAAGAGCAAGGGAGA+AGG | - | chr4.2:10221140-10221159 | MS.gene58173:intron | 40.0% | |
CCAAGATAAGTCTTCAAGTC+TGG | + | chr4.2:10221362-10221381 | None:intergenic | 40.0% | |
CCAATTCCTCTGATCAAATC+AGG | + | chr4.2:10219883-10219902 | None:intergenic | 40.0% | |
CCAGACTTGAAGACTTATCT+TGG | - | chr4.2:10221359-10221378 | MS.gene58173:CDS | 40.0% | |
CTCTGATCAAATCAGGGTTT+CGG | + | chr4.2:10219876-10219895 | None:intergenic | 40.0% | |
CTTCTTGCCGGTAGATTTAA+GGG | - | chr4.2:10220440-10220459 | MS.gene58173:intron | 40.0% | |
GAAAGATGACCAGAAAACAG+TGG | - | chr4.2:10221304-10221323 | MS.gene58173:CDS | 40.0% | |
GCTATTAAGGCCAAAAATGG+TGG | - | chr4.2:10219946-10219965 | MS.gene58173:CDS | 40.0% | |
GTTACAAGAAGCAATCCAGA+AGG | + | chr4.2:10220494-10220513 | None:intergenic | 40.0% | |
GTTATGCTCATTGCTTCTGT+TGG | - | chr4.2:10221227-10221246 | MS.gene58173:CDS | 40.0% | |
TCAACCAAAGTCGATATCTC+CGG | - | chr4.2:10221068-10221087 | MS.gene58173:intron | 40.0% | |
TCTGGATTGCTTCTTGTAAC+TGG | - | chr4.2:10220494-10220513 | MS.gene58173:intron | 40.0% | |
TCTTCTTGCCGGTAGATTTA+AGG | - | chr4.2:10220439-10220458 | MS.gene58173:intron | 40.0% | |
TGGGCTATTAAGGCCAAAAA+TGG | - | chr4.2:10219943-10219962 | MS.gene58173:CDS | 40.0% | |
! | CCTGATTTGATCAGAGGAAT+TGG | - | chr4.2:10219880-10219899 | MS.gene58173:CDS | 40.0% |
! | GGTTGATGTACCAATCACAT+AGG | + | chr4.2:10221054-10221073 | None:intergenic | 40.0% |
! | TAGGTTTAGGATCATGACGA+GGG | + | chr4.2:10219978-10219997 | None:intergenic | 40.0% |
! | TCAGCAGGGTAAAATTTTGG+TGG | + | chr4.2:10220024-10220043 | None:intergenic | 40.0% |
! | TTAGGTTTAGGATCATGACG+AGG | + | chr4.2:10219979-10219998 | None:intergenic | 40.0% |
!! | GAAAGGTATCTGGGCTATTA+AGG | - | chr4.2:10219933-10219952 | MS.gene58173:CDS | 40.0% |
!! | GGTTTTTCAACAGCAGTTTC+GGG | + | chr4.2:10220003-10220022 | None:intergenic | 40.0% |
!!! | CTCCCTTGCTCTTCTTTTTT+GGG | + | chr4.2:10221139-10221158 | None:intergenic | 40.0% |
!!! | GTTGGGTCTTTTTTGTCTTC+AGG | - | chr4.2:10220387-10220406 | MS.gene58173:intron | 40.0% |
!!! | TCCCTTGCTCTTCTTTTTTG+GGG | + | chr4.2:10221138-10221157 | None:intergenic | 40.0% |
!!! | TCTCCCTTGCTCTTCTTTTT+TGG | + | chr4.2:10221140-10221159 | None:intergenic | 40.0% |
!!! | TTTTTGAAGCAGCTTCCTTC+TGG | - | chr4.2:10220476-10220495 | MS.gene58173:intron | 40.0% |
AACCTGAGCTTAGTCTGCTT+AGG | + | chr4.2:10220081-10220100 | None:intergenic | 45.0% | |
AAGAAGAATCAGCACTGTGC+CGG | + | chr4.2:10220426-10220445 | None:intergenic | 45.0% | |
AGCCCCAAAAAAGAAGAGCA+AGG | - | chr4.2:10221133-10221152 | MS.gene58173:intron | 45.0% | |
AGGAACTCCGTTGATCTTGA+AGG | + | chr4.2:10221012-10221031 | None:intergenic | 45.0% | |
CCTCTTGCCCTTAAATCTAC+CGG | + | chr4.2:10220450-10220469 | None:intergenic | 45.0% | |
CGGTAGATTTAAGGGCAAGA+GGG | - | chr4.2:10220448-10220467 | MS.gene58173:intron | 45.0% | |
GCCCCAAAAAAGAAGAGCAA+GGG | - | chr4.2:10221134-10221153 | MS.gene58173:intron | 45.0% | |
GCTTCTTCACATCATCAGCA+GGG | + | chr4.2:10220038-10220057 | None:intergenic | 45.0% | |
GGAACTCCGTTGATCTTGAA+GGG | + | chr4.2:10221011-10221030 | None:intergenic | 45.0% | |
GTGAATCAGGCCTATGTGAT+TGG | - | chr4.2:10221041-10221060 | MS.gene58173:intron | 45.0% | |
TAGATTTAAGGGCAAGAGGG+TGG | - | chr4.2:10220451-10220470 | MS.gene58173:intron | 45.0% | |
TCAGGTCCCTTCAAGATCAA+CGG | - | chr4.2:10221002-10221021 | MS.gene58173:intron | 45.0% | |
TGAAGAGAAGCCAAGACAAG+TGG | + | chr4.2:10220959-10220978 | None:intergenic | 45.0% | |
TGGTCATCTTTCTTCTGCTG+AGG | + | chr4.2:10221296-10221315 | None:intergenic | 45.0% | |
TTAACAGGCACCACTTGTCT+TGG | - | chr4.2:10220946-10220965 | MS.gene58173:intron | 45.0% | |
! | AGGGAAAACGCCACCATTTT+TGG | + | chr4.2:10219959-10219978 | None:intergenic | 45.0% |
! | CGAAACCCTGATTTGATCAG+AGG | - | chr4.2:10219874-10219893 | MS.gene58173:CDS | 45.0% |
! | CGATATCTCCGGTGTTAATG+TGG | - | chr4.2:10221079-10221098 | MS.gene58173:intron | 45.0% |
!! | AACACCGGAGATATCGACTT+TGG | + | chr4.2:10221075-10221094 | None:intergenic | 45.0% |
!! | ACAGTGCTGATTCTTCTTGC+CGG | - | chr4.2:10220428-10220447 | MS.gene58173:intron | 45.0% |
!! | TCCTTTGAGACGTGTGAATC+AGG | - | chr4.2:10221028-10221047 | MS.gene58173:intron | 45.0% |
!! | TGAAGACTTATCTTGGTGCC+AGG | - | chr4.2:10221366-10221385 | MS.gene58173:CDS | 45.0% |
!! | TGTTAAAAAAAAAAAAAAAA+AGG | + | chr4.2:10220932-10220951 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTTTTTTTTAAC+AGG | - | chr4.2:10220931-10220950 | MS.gene58173:intron | 5.0% |
ACCTGCCTTGAGAGAAAACC+TGG | + | chr4.2:10221387-10221406 | None:intergenic | 50.0% | |
AGAAGAATCAGCACTGTGCC+GGG | + | chr4.2:10220425-10220444 | None:intergenic | 50.0% | |
AGCCTAAGCAGACTAAGCTC+AGG | - | chr4.2:10220076-10220095 | MS.gene58173:intron | 50.0% | |
CCGGTAGATTTAAGGGCAAG+AGG | - | chr4.2:10220447-10220466 | MS.gene58173:intron | 50.0% | |
GCAGTTTCGGGCTTAGGTTT+AGG | + | chr4.2:10219991-10220010 | None:intergenic | 50.0% | |
GCCTGATTCACACGTCTCAA+AGG | + | chr4.2:10221032-10221051 | None:intergenic | 50.0% | |
GGCTTCTTCACATCATCAGC+AGG | + | chr4.2:10220039-10220058 | None:intergenic | 50.0% | |
TCAACAGCAGTTTCGGGCTT+AGG | + | chr4.2:10219997-10220016 | None:intergenic | 50.0% | |
! | GGCTTATGCTTGTTGCGAAG+AGG | + | chr4.2:10220060-10220079 | None:intergenic | 50.0% |
!! | TGGTGCCAGGTTTTCTCTCA+AGG | - | chr4.2:10221379-10221398 | MS.gene58173:CDS | 50.0% |
ATCAGGGTTTCGGCTAACCC+TGG | + | chr4.2:10219866-10219885 | None:intergenic | 55.0% | |
TCAGGGTTTCGGCTAACCCT+GGG | + | chr4.2:10219865-10219884 | None:intergenic | 55.0% | |
TTCAGGGCAAGCATCACTCC+CGG | - | chr4.2:10220404-10220423 | MS.gene58173:intron | 55.0% | |
! | GCCAGGTTTTCTCTCAAGGC+AGG | - | chr4.2:10221383-10221402 | MS.gene58173:CDS | 55.0% |
! | GTGCAGCGTCCACTGTTTTC+TGG | + | chr4.2:10221316-10221335 | None:intergenic | 55.0% |
CTGGGTGCTCTCTGCTTCGT+CGG | + | chr4.2:10219847-10219866 | None:intergenic | 60.0% | |
!! | GACGAAGCAGAGAGCACCCA+GGG | - | chr4.2:10219846-10219865 | MS.gene58173:CDS | 60.0% |
!! | CGACGAAGCAGAGAGCACCC+AGG | - | chr4.2:10219845-10219864 | MS.gene58173:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 10219838 | 10221433 | 10219838 | ID=MS.gene58173 |
chr4.2 | mRNA | 10219838 | 10221433 | 10219838 | ID=MS.gene58173.t1;Parent=MS.gene58173 |
chr4.2 | exon | 10221174 | 10221433 | 10221174 | ID=MS.gene58173.t1.exon1;Parent=MS.gene58173.t1 |
chr4.2 | CDS | 10221174 | 10221433 | 10221174 | ID=cds.MS.gene58173.t1;Parent=MS.gene58173.t1 |
chr4.2 | exon | 10220756 | 10220862 | 10220756 | ID=MS.gene58173.t1.exon2;Parent=MS.gene58173.t1 |
chr4.2 | CDS | 10220756 | 10220862 | 10220756 | ID=cds.MS.gene58173.t1;Parent=MS.gene58173.t1 |
chr4.2 | exon | 10220084 | 10220265 | 10220084 | ID=MS.gene58173.t1.exon3;Parent=MS.gene58173.t1 |
chr4.2 | CDS | 10220084 | 10220265 | 10220084 | ID=cds.MS.gene58173.t1;Parent=MS.gene58173.t1 |
chr4.2 | exon | 10219838 | 10219993 | 10219838 | ID=MS.gene58173.t1.exon4;Parent=MS.gene58173.t1 |
chr4.2 | CDS | 10219838 | 10219993 | 10219838 | ID=cds.MS.gene58173.t1;Parent=MS.gene58173.t1 |
Gene Sequence |
Protein sequence |