Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06481.t1 | XP_003602484.1 | 97.9 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 1.00E-121 | 446 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06481.t1 | Q9C9C6 | 79.4 | 233 | 48 | 0 | 1 | 233 | 1 | 233 | 2.8e-99 | 362.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06481.t1 | B7FH28 | 97.9 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 7.5e-122 | 446.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06481 | MS.gene067072 | PPI |
| MS.gene06481 | MS.gene023799 | PPI |
| MS.gene06481 | MS.gene31056 | PPI |
| MS.gene06481 | MS.gene045180 | PPI |
| MS.gene013401 | MS.gene06481 | PPI |
| MS.gene06481 | MS.gene042025 | PPI |
| MS.gene06481 | MS.gene041557 | PPI |
| MS.gene06481 | MS.gene06501 | PPI |
| MS.gene06481 | MS.gene70316 | PPI |
| MS.gene049376 | MS.gene06481 | PPI |
| MS.gene06481 | MS.gene036487 | PPI |
| MS.gene06481 | MS.gene035331 | PPI |
| MS.gene06481 | MS.gene42910 | PPI |
| MS.gene70551 | MS.gene06481 | PPI |
| MS.gene06481 | MS.gene030719 | PPI |
| MS.gene42236 | MS.gene06481 | PPI |
| MS.gene27648 | MS.gene06481 | PPI |
| MS.gene06481 | MS.gene59319 | PPI |
| MS.gene06481 | MS.gene52173 | PPI |
| MS.gene06481 | MS.gene75537 | PPI |
| MS.gene06481 | MS.gene81197 | PPI |
| MS.gene047734 | MS.gene06481 | PPI |
| MS.gene06481 | MS.gene28147 | PPI |
| MS.gene06481 | MS.gene010453 | PPI |
| MS.gene06481 | MS.gene31039 | PPI |
| MS.gene06481 | MS.gene73008 | PPI |
| MS.gene06481 | MS.gene58173 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06481.t1 | MTR_3g094570 | 97.854 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 2.32e-166 | 458 |
| MS.gene06481.t1 | MTR_3g094860 | 97.854 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 4.02e-166 | 457 |
| MS.gene06481.t1 | MTR_5g098090 | 84.615 | 234 | 35 | 1 | 1 | 233 | 1 | 234 | 3.36e-141 | 395 |
| MS.gene06481.t1 | MTR_8g091910 | 81.197 | 234 | 28 | 2 | 1 | 233 | 1 | 219 | 6.85e-132 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06481.t1 | AT1G74060 | 79.399 | 233 | 48 | 0 | 1 | 233 | 1 | 233 | 3.00e-120 | 342 |
| MS.gene06481.t1 | AT1G74050 | 79.399 | 233 | 48 | 0 | 1 | 233 | 1 | 233 | 7.06e-120 | 341 |
| MS.gene06481.t1 | AT1G18540 | 77.682 | 233 | 52 | 0 | 1 | 233 | 1 | 233 | 4.99e-113 | 323 |
Find 68 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCTGGAAGATTTA+AGG | 0.132093 | 3.2:+79334472 | MS.gene06481:CDS |
| TTTCTCAAACAGCTTCCTTC+TGG | 0.232559 | 3.2:+79334509 | MS.gene06481:CDS |
| GGCTTCTCGGCCGGAGCTGC+AGG | 0.250032 | 3.2:-79333655 | None:intergenic |
| TTAGGTCCATTCAAGATTAA+TGG | 0.250233 | 3.2:+79336166 | MS.gene06481:intron |
| AACCTGAGCTTAGTGGGTTT+TGG | 0.276883 | 3.2:-79333733 | None:intergenic |
| CTTCTTGCTGGAAGATTTAA+GGG | 0.311988 | 3.2:+79334473 | MS.gene06481:CDS |
| TGTATCACAAACGCGGTCTC+TGG | 0.331919 | 3.2:+79333578 | MS.gene06481:CDS |
| TCTGGACTTCTTCTTGTTAC+CGG | 0.344596 | 3.2:+79334527 | MS.gene06481:CDS |
| GGCTTCTTCACGTCGTCGGC+GGG | 0.353564 | 3.2:-79333691 | None:intergenic |
| CCCCTTGAGACGCGTGAATC+AGG | 0.355178 | 3.2:+79336192 | MS.gene06481:CDS |
| TGGCTTCACACCTGCCTTCA+AGG | 0.355239 | 3.2:-79336543 | None:intergenic |
| CGAGTTCTTTGAGGCAGATA+AGG | 0.375748 | 3.2:+79336327 | MS.gene06481:CDS |
| CAAGTCTGGAACACTGTCAA+TGG | 0.377541 | 3.2:-79336495 | None:intergenic |
| ACAGTGTTGATTCTTCTTGC+TGG | 0.383364 | 3.2:+79334461 | MS.gene06481:CDS |
| CCGATACCCCTGATCAAGTC+AGG | 0.389802 | 3.2:-79333535 | None:intergenic |
| TACCAAAGTAAATATTTCTT+CGG | 0.401521 | 3.2:+79336234 | MS.gene06481:CDS |
| GCCGTAACCCTGACTTGATC+AGG | 0.402373 | 3.2:+79333527 | MS.gene06481:CDS |
| TTCAGGGCTTCTATTACTCC+AGG | 0.405045 | 3.2:+79334437 | MS.gene06481:intron |
| GTGAATCAGGCTTATGTTAT+CGG | 0.415167 | 3.2:+79336205 | MS.gene06481:CDS |
| AACCGAAGAAATATTTACTT+TGG | 0.447245 | 3.2:-79336236 | None:intergenic |
| AGAAGAATCAACACTGTCCC+TGG | 0.473766 | 3.2:-79334455 | None:intergenic |
| GATCATCTTTCTTCTCCTGA+GGG | 0.477455 | 3.2:-79336442 | None:intergenic |
| AACTTAGGCGGCTTCTCGGC+CGG | 0.480002 | 3.2:-79333664 | None:intergenic |
| CGTCGCTAAGCCTGCAGCTC+CGG | 0.482998 | 3.2:+79333645 | MS.gene06481:CDS |
| CCTGACTTGATCAGGGGTAT+CGG | 0.491288 | 3.2:+79333535 | MS.gene06481:CDS |
| GGGACTCCATTAATCTTGAA+TGG | 0.491418 | 3.2:-79336172 | None:intergenic |
| TGATCATCTTTCTTCTCCTG+AGG | 0.494574 | 3.2:-79336443 | None:intergenic |
| TGAAAACTTACCTAGGTGCC+AGG | 0.495019 | 3.2:+79336516 | MS.gene06481:CDS |
| GTAAAACTTAGGCGGCTTCT+CGG | 0.498660 | 3.2:-79333668 | None:intergenic |
| CACATGAGTTGGTCTTCTAA+AGG | 0.499867 | 3.2:+79336564 | MS.gene06481:CDS |
| GGGAGAGAGCGAGTTCTTTG+AGG | 0.505471 | 3.2:+79336318 | MS.gene06481:CDS |
| GTATCACAAACGCGGTCTCT+GGG | 0.507508 | 3.2:+79333579 | MS.gene06481:CDS |
| ACGCGGTCTCTGGGCAATCA+AGG | 0.510085 | 3.2:+79333588 | MS.gene06481:CDS |
| GCCTGATTCACGCGTCTCAA+GGG | 0.511499 | 3.2:-79336193 | None:intergenic |
| ACCTGCCTTCAAGGAAAACC+TGG | 0.516282 | 3.2:-79336534 | None:intergenic |
| GGTGACGAACCTGAGCTTAG+TGG | 0.517641 | 3.2:-79333740 | None:intergenic |
| TGGCTTCTTCACGTCGTCGG+CGG | 0.523746 | 3.2:-79333692 | None:intergenic |
| CCCTGATCAAGTCAGGGTTA+CGG | 0.525127 | 3.2:-79333528 | None:intergenic |
| CGGAGCTGCAGGCTTAGCGA+CGG | 0.526524 | 3.2:-79333644 | None:intergenic |
| AGCCTGATTCACGCGTCTCA+AGG | 0.530773 | 3.2:-79336194 | None:intergenic |
| GATCAAAAGACTGTCGATGC+TGG | 0.534143 | 3.2:+79336461 | MS.gene06481:CDS |
| GGAGCTGCAGGCTTAGCGAC+GGG | 0.545817 | 3.2:-79333643 | None:intergenic |
| GTGACGAACCTGAGCTTAGT+GGG | 0.562791 | 3.2:-79333739 | None:intergenic |
| CAGGCTTAGCGACGGGATCG+TGG | 0.569427 | 3.2:-79333636 | None:intergenic |
| CCGTAACCCTGACTTGATCA+GGG | 0.572652 | 3.2:+79333528 | MS.gene06481:CDS |
| TAGCGACGGGATCGTGGCGA+GGG | 0.582049 | 3.2:-79333630 | None:intergenic |
| AGCCAAAACCCACTAAGCTC+AGG | 0.582122 | 3.2:+79333731 | MS.gene06481:CDS |
| GAGTGGCTTCTTCACGTCGT+CGG | 0.583036 | 3.2:-79333695 | None:intergenic |
| TCAAGGAAAACCTGGCACCT+AGG | 0.589414 | 3.2:-79336526 | None:intergenic |
| GGCTTGTGCTTGTTGCGGAG+TGG | 0.594085 | 3.2:-79333712 | None:intergenic |
| TGATGACAAGTACTTCTCAA+AGG | 0.595456 | 3.2:+79336273 | MS.gene06481:CDS |
| TTAGCGACGGGATCGTGGCG+AGG | 0.595917 | 3.2:-79333631 | None:intergenic |
| CCAGACTTGAAAACTTACCT+AGG | 0.601511 | 3.2:+79336509 | MS.gene06481:CDS |
| CCTGATTCACGCGTCTCAAG+GGG | 0.605601 | 3.2:-79336192 | None:intergenic |
| CGATACCCCTGATCAAGTCA+GGG | 0.606077 | 3.2:-79333534 | None:intergenic |
| CTTTAGAAGACCAACTCATG+TGG | 0.608084 | 3.2:-79336563 | None:intergenic |
| AGGTGTGAAGCCACATGAGT+TGG | 0.608147 | 3.2:+79336553 | MS.gene06481:CDS |
| GTTCTTTGAGGCAGATAAGG+AGG | 0.609313 | 3.2:+79336330 | MS.gene06481:CDS |
| GTAACAAGAAGAAGTCCAGA+AGG | 0.620622 | 3.2:-79334524 | None:intergenic |
| TCAGGGCTTCTATTACTCCA+GGG | 0.623428 | 3.2:+79334438 | MS.gene06481:intron |
| GCTTCTTCACGTCGTCGGCG+GGG | 0.624269 | 3.2:-79333690 | None:intergenic |
| AGGGTTACGGCTCACTCTTG+CGG | 0.626952 | 3.2:-79333515 | None:intergenic |
| TCGTCGGCGGGGTAAAACTT+AGG | 0.627965 | 3.2:-79333679 | None:intergenic |
| TGGGCAATCAAGGCTAAGCA+CGG | 0.658739 | 3.2:+79333598 | MS.gene06481:CDS |
| TCGGCGGGGTAAAACTTAGG+CGG | 0.660381 | 3.2:-79333676 | None:intergenic |
| CGTAACCCTGACTTGATCAG+GGG | 0.675659 | 3.2:+79333529 | MS.gene06481:CDS |
| GCAATCAAGGCTAAGCACGG+TGG | 0.725321 | 3.2:+79333601 | MS.gene06481:CDS |
| TCTGCTATGTATCACAAACG+CGG | 0.764367 | 3.2:+79333571 | MS.gene06481:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTCATATAAAATAATT+TGG | + | chr3.2:79334633-79334652 | MS.gene06481:intron | 10.0% |
| !! | TTAATATTTATAATTACAGA+TGG | + | chr3.2:79334077-79334096 | MS.gene06481:intron | 10.0% |
| !! | AAAAAATCAATGATTTAACT+TGG | + | chr3.2:79335758-79335777 | MS.gene06481:intron | 15.0% |
| !! | AAAGATATTATTAAGTGTAT+TGG | - | chr3.2:79335975-79335994 | None:intergenic | 15.0% |
| !! | ATTAAAATTAAGAATCAAGT+TGG | - | chr3.2:79335562-79335581 | None:intergenic | 15.0% |
| !! | ATTGATATGTTAAGATTAAA+AGG | + | chr3.2:79335270-79335289 | MS.gene06481:intron | 15.0% |
| !! | CTCAAAATTAGAATAAAAAA+GGG | - | chr3.2:79334278-79334297 | None:intergenic | 15.0% |
| !! | TATTTATTTATAGTTTCAAG+TGG | - | chr3.2:79335236-79335255 | None:intergenic | 15.0% |
| !! | TCTCAAAATTAGAATAAAAA+AGG | - | chr3.2:79334279-79334298 | None:intergenic | 15.0% |
| !! | TGTATTTGGTAAATATTATT+TGG | + | chr3.2:79334716-79334735 | MS.gene06481:intron | 15.0% |
| !! | TTAAAATTAAGAATCAAGTT+GGG | - | chr3.2:79335561-79335580 | None:intergenic | 15.0% |
| !! | TTGTAAAGACTAAAAATATA+AGG | + | chr3.2:79335024-79335043 | MS.gene06481:intron | 15.0% |
| !! | TTTCTTAAAACAATAATTAC+CGG | - | chr3.2:79334549-79334568 | None:intergenic | 15.0% |
| !!! | AAATAGAAAATCTAGAATTA+TGG | - | chr3.2:79335094-79335113 | None:intergenic | 15.0% |
| !!! | AAATTTTATATGATATCTTC+AGG | + | chr3.2:79333855-79333874 | MS.gene06481:intron | 15.0% |
| !!! | AATTTTTAGAAATATTAGGA+TGG | - | chr3.2:79335489-79335508 | None:intergenic | 15.0% |
| !!! | ACTAATTTTTTAATTCTTTG+GGG | + | chr3.2:79335189-79335208 | MS.gene06481:intron | 15.0% |
| !!! | ATAATTATAGTTGTTTTATC+TGG | + | chr3.2:79336035-79336054 | MS.gene06481:intron | 15.0% |
| !!! | ATAATTCTAGATTTTCTATT+TGG | + | chr3.2:79335093-79335112 | MS.gene06481:intron | 15.0% |
| !!! | ATATACATTTTTTGTTTAGT+AGG | + | chr3.2:79335424-79335443 | MS.gene06481:intron | 15.0% |
| !!! | ATATTTGTTTGTTGTATTAT+GGG | + | chr3.2:79334609-79334628 | MS.gene06481:intron | 15.0% |
| !!! | CATGAATTTTTAGAAATATT+AGG | - | chr3.2:79335493-79335512 | None:intergenic | 15.0% |
| !!! | GACTAATTTTTTAATTCTTT+GGG | + | chr3.2:79335188-79335207 | MS.gene06481:intron | 15.0% |
| !!! | TAATTATAGTTGTTTTATCT+GGG | + | chr3.2:79336036-79336055 | MS.gene06481:intron | 15.0% |
| !!! | TATATTTGTTTGTTGTATTA+TGG | + | chr3.2:79334608-79334627 | MS.gene06481:intron | 15.0% |
| !! | AATATAAGGTAGTACATTTA+TGG | + | chr3.2:79335038-79335057 | MS.gene06481:intron | 20.0% |
| !! | AATATAGAAACTGTTGATAT+TGG | + | chr3.2:79334204-79334223 | MS.gene06481:intron | 20.0% |
| !! | ATAAATCATTCAATTTGACA+AGG | - | chr3.2:79334399-79334418 | None:intergenic | 20.0% |
| !! | GTCAAATTGAATGATTTATT+TGG | + | chr3.2:79334400-79334419 | MS.gene06481:intron | 20.0% |
| !! | TAATCTTAACATATCAATCA+AGG | - | chr3.2:79335268-79335287 | None:intergenic | 20.0% |
| !! | TACCAAAGTAAATATTTCTT+CGG | + | chr3.2:79336234-79336253 | MS.gene06481:CDS | 20.0% |
| !! | TATGCTCTATTTATTTCAAT+GGG | + | chr3.2:79335887-79335906 | MS.gene06481:intron | 20.0% |
| !! | TTATGCTCTATTTATTTCAA+TGG | + | chr3.2:79335886-79335905 | MS.gene06481:intron | 20.0% |
| !!! | ATTTCTAAAAATTCATGTAG+AGG | + | chr3.2:79335496-79335515 | MS.gene06481:intron | 20.0% |
| !!! | GGACTAATTTTTTAATTCTT+TGG | + | chr3.2:79335187-79335206 | MS.gene06481:intron | 20.0% |
| !!! | TAAAATTAAGAATCAAGTTG+GGG | - | chr3.2:79335560-79335579 | None:intergenic | 20.0% |
| !!! | TAAACCTACTTTTTTTATCT+GGG | + | chr3.2:79335816-79335835 | MS.gene06481:intron | 20.0% |
| !!! | TGCTTATTTAAAGTTTGTTT+TGG | + | chr3.2:79334690-79334709 | MS.gene06481:intron | 20.0% |
| !!! | TTAATAATATCTTTTGCTCA+TGG | + | chr3.2:79335981-79336000 | MS.gene06481:intron | 20.0% |
| !!! | TTGTTATACTACGTTTATTT+TGG | + | chr3.2:79334307-79334326 | MS.gene06481:intron | 20.0% |
| !!! | TTTTAATTGCACTGTTTATT+AGG | + | chr3.2:79335575-79335594 | MS.gene06481:intron | 20.0% |
| ! | AACCGAAGAAATATTTACTT+TGG | - | chr3.2:79336239-79336258 | None:intergenic | 25.0% |
| ! | AATAAATAGAGCATAACCTA+TGG | - | chr3.2:79335882-79335901 | None:intergenic | 25.0% |
| ! | ATTATGGTCTGCAATATAAA+AGG | - | chr3.2:79335078-79335097 | None:intergenic | 25.0% |
| ! | CAACAAAGAAAACGATAATT+GGG | + | chr3.2:79335166-79335185 | MS.gene06481:intron | 25.0% |
| ! | CAGTTATATACATAAAATGC+TGG | - | chr3.2:79334586-79334605 | None:intergenic | 25.0% |
| ! | CTCAAAATTGCAACAAAAAA+AGG | - | chr3.2:79333788-79333807 | None:intergenic | 25.0% |
| ! | GAAAGATATTAGTATTACCA+TGG | - | chr3.2:79335465-79335484 | None:intergenic | 25.0% |
| ! | GTAAATTAAGACTAGAGATT+AGG | + | chr3.2:79335334-79335353 | MS.gene06481:intron | 25.0% |
| ! | TAAAAGCTATGTAAAGAAGT+TGG | + | chr3.2:79334919-79334938 | MS.gene06481:intron | 25.0% |
| ! | TATTTATAATTACAGATGGC+TGG | + | chr3.2:79334081-79334100 | MS.gene06481:intron | 25.0% |
| ! | TTATCAGTAGAAATGAACAA+TGG | - | chr3.2:79333764-79333783 | None:intergenic | 25.0% |
| ! | TTTATATGATATCTTCAGGT+TGG | + | chr3.2:79333859-79333878 | MS.gene06481:intron | 25.0% |
| ! | TTTCCATTGAAAATTACATG+AGG | + | chr3.2:79334805-79334824 | MS.gene06481:intron | 25.0% |
| !! | ACAGTTTAGTTGTAAAGTTT+TGG | - | chr3.2:79334137-79334156 | None:intergenic | 25.0% |
| !! | TATACATTTTCATCACACTA+TGG | - | chr3.2:79335727-79335746 | None:intergenic | 25.0% |
| !!! | AAGATGTGGTGTTTTTTTAA+TGG | + | chr3.2:79333994-79334013 | MS.gene06481:intron | 25.0% |
| !!! | CTAAACCTACTTTTTTTATC+TGG | + | chr3.2:79335815-79335834 | MS.gene06481:intron | 25.0% |
| !!! | GTTTGTTTTGGATTTGTATT+TGG | + | chr3.2:79334702-79334721 | MS.gene06481:intron | 25.0% |
| !!! | TAGTTGTAAAGTTTTGGAAA+TGG | - | chr3.2:79334131-79334150 | None:intergenic | 25.0% |
| !!! | TGTTTGTTGAGTTGATATTT+TGG | + | chr3.2:79336355-79336374 | MS.gene06481:intron | 25.0% |
| !!! | TTACAATGCTTTTGCTTTTT+AGG | + | chr3.2:79336406-79336425 | MS.gene06481:intron | 25.0% |
| !!! | TTGTTTTGTCTGTTAAAACT+GGG | + | chr3.2:79333928-79333947 | MS.gene06481:intron | 25.0% |
| !!! | TTTTGCTTTTTAGGACAAAA+AGG | + | chr3.2:79336415-79336434 | MS.gene06481:intron | 25.0% |
| AACAGGTCAAACAATAACTA+AGG | - | chr3.2:79334974-79334993 | None:intergenic | 30.0% | |
| AACTCTTAGTGGTTACTTAT+AGG | - | chr3.2:79334852-79334871 | None:intergenic | 30.0% | |
| AATCACAATAACTCCACAAA+GGG | - | chr3.2:79333902-79333921 | None:intergenic | 30.0% | |
| ACATCCCAGATAAAAAAAGT+AGG | - | chr3.2:79335823-79335842 | None:intergenic | 30.0% | |
| ACTCAGTCATCAACAATTAA+TGG | - | chr3.2:79334041-79334060 | None:intergenic | 30.0% | |
| AGACATGACAATATCGAATT+TGG | + | chr3.2:79335656-79335675 | MS.gene06481:intron | 30.0% | |
| AGTATGTTCAAATCTAGAGA+CGG | - | chr3.2:79335609-79335628 | None:intergenic | 30.0% | |
| ATGACAATATCGAATTTGGT+TGG | + | chr3.2:79335660-79335679 | MS.gene06481:intron | 30.0% | |
| ATTAACTCAATCATCATCTG+TGG | - | chr3.2:79335930-79335949 | None:intergenic | 30.0% | |
| ATTAATCTTGAATGGACCTA+AGG | - | chr3.2:79336167-79336186 | None:intergenic | 30.0% | |
| CCAACAAAGAAAACGATAAT+TGG | + | chr3.2:79335165-79335184 | MS.gene06481:intron | 30.0% | |
| CTAAACATTTCAACTCTTAG+TGG | - | chr3.2:79334863-79334882 | None:intergenic | 30.0% | |
| GGGATGTGTTTAAATATACT+AGG | + | chr3.2:79335836-79335855 | MS.gene06481:intron | 30.0% | |
| TAACAGATCCAAAATAAACG+TGG | - | chr3.2:79333817-79333836 | None:intergenic | 30.0% | |
| TAGAAACTGTTGATATTGGT+AGG | + | chr3.2:79334208-79334227 | MS.gene06481:intron | 30.0% | |
| TATAACTTTACCAACTTCCA+TGG | + | chr3.2:79335307-79335326 | MS.gene06481:intron | 30.0% | |
| TCAATAGAATTGAAAAACGC+TGG | - | chr3.2:79334251-79334270 | None:intergenic | 30.0% | |
| TGATGACTGAGTTAATATAG+TGG | + | chr3.2:79334049-79334068 | MS.gene06481:intron | 30.0% | |
| TTAGGTCCATTCAAGATTAA+TGG | + | chr3.2:79336166-79336185 | MS.gene06481:intron | 30.0% | |
| TTAGTGGTTACTTATAGGAA+AGG | - | chr3.2:79334847-79334866 | None:intergenic | 30.0% | |
| ! | ACACCTCATGTAATTTTCAA+TGG | - | chr3.2:79334811-79334830 | None:intergenic | 30.0% |
| ! | CCAATTATCGTTTTCTTTGT+TGG | - | chr3.2:79335168-79335187 | None:intergenic | 30.0% |
| ! | CTATTTGGTTTCTTGTACTT+TGG | + | chr3.2:79335108-79335127 | MS.gene06481:intron | 30.0% |
| !!! | AGGTTGGTTTTTTTCAAAAC+AGG | - | chr3.2:79334954-79334973 | None:intergenic | 30.0% |
| !!! | CTTGTTTTGTCTGTTAAAAC+TGG | + | chr3.2:79333927-79333946 | MS.gene06481:intron | 30.0% |
| AAGCATAGCGTTACAAAAAC+AGG | - | chr3.2:79334991-79335010 | None:intergenic | 35.0% | |
| ACCTAGTTATACATCTCCAT+AGG | + | chr3.2:79335863-79335882 | MS.gene06481:intron | 35.0% | |
| ACCTATGGAGATGTATAACT+AGG | - | chr3.2:79335867-79335886 | None:intergenic | 35.0% | |
| AGTCTTAATTTACACCTCCA+TGG | - | chr3.2:79335327-79335346 | None:intergenic | 35.0% | |
| ATATTAGTTGCTACCAATGC+TGG | - | chr3.2:79334189-79334208 | None:intergenic | 35.0% | |
| ATCACAATAACTCCACAAAG+GGG | - | chr3.2:79333901-79333920 | None:intergenic | 35.0% | |
| ATTCATCACACTAAGGTAAG+AGG | - | chr3.2:79335688-79335707 | None:intergenic | 35.0% | |
| CAACTCAATTCATCACACTA+AGG | - | chr3.2:79335695-79335714 | None:intergenic | 35.0% | |
| CCTATTAATATGCTTGTCAC+AGG | + | chr3.2:79335380-79335399 | MS.gene06481:intron | 35.0% | |
| CCTGTGACAAGCATATTAAT+AGG | - | chr3.2:79335383-79335402 | None:intergenic | 35.0% | |
| CGATGGTCTATTAGTGAAAT+AGG | + | chr3.2:79335629-79335648 | MS.gene06481:intron | 35.0% | |
| CTAGATTTGAACATACTCGA+TGG | + | chr3.2:79335612-79335631 | MS.gene06481:intron | 35.0% | |
| CTTCTTGCTGGAAGATTTAA+GGG | + | chr3.2:79334473-79334492 | MS.gene06481:CDS | 35.0% | |
| GAAATTTAATTCCCCCTTTG+TGG | + | chr3.2:79333886-79333905 | MS.gene06481:intron | 35.0% | |
| GAAGATTTGTCAAAGATGAG+TGG | - | chr3.2:79336126-79336145 | None:intergenic | 35.0% | |
| GAATCACAATAACTCCACAA+AGG | - | chr3.2:79333903-79333922 | None:intergenic | 35.0% | |
| GCAATCAGTCAATAAACAAG+AGG | - | chr3.2:79334377-79334396 | None:intergenic | 35.0% | |
| GCTGATGTTTGATTAAGATG+TGG | + | chr3.2:79333980-79333999 | MS.gene06481:intron | 35.0% | |
| GGTCAAACAATAACTAAGGT+TGG | - | chr3.2:79334970-79334989 | None:intergenic | 35.0% | |
| GGTCAGAGTAAAAAATTCCA+TGG | + | chr3.2:79335445-79335464 | MS.gene06481:intron | 35.0% | |
| GTGAATCAGGCTTATGTTAT+CGG | + | chr3.2:79336205-79336224 | MS.gene06481:CDS | 35.0% | |
| TCTTCTTGCTGGAAGATTTA+AGG | + | chr3.2:79334472-79334491 | MS.gene06481:CDS | 35.0% | |
| TGAAAATTACATGAGGTGTG+TGG | + | chr3.2:79334812-79334831 | MS.gene06481:intron | 35.0% | |
| TGATGACAAGTACTTCTCAA+AGG | + | chr3.2:79336273-79336292 | MS.gene06481:CDS | 35.0% | |
| TGGAGATGTATAACTAGGTT+TGG | - | chr3.2:79335862-79335881 | None:intergenic | 35.0% | |
| TTGTTCACTCTCATTACCTT+AGG | + | chr3.2:79336148-79336167 | MS.gene06481:intron | 35.0% | |
| ! | AGTAACTGCCACGTTTATTT+TGG | + | chr3.2:79333806-79333825 | MS.gene06481:intron | 35.0% |
| ! | TTCAAATCTAGAGACGGATT+AGG | - | chr3.2:79335603-79335622 | None:intergenic | 35.0% |
| ! | TTTTGTCTGTTAAAACTGGG+TGG | + | chr3.2:79333931-79333950 | MS.gene06481:intron | 35.0% |
| !! | GGTACCTGAATTTGTTTTCA+GGG | + | chr3.2:79334421-79334440 | MS.gene06481:intron | 35.0% |
| !! | TCAAATCTAGAGACGGATTA+GGG | - | chr3.2:79335602-79335621 | None:intergenic | 35.0% |
| !! | TGGTACCTGAATTTGTTTTC+AGG | + | chr3.2:79334420-79334439 | MS.gene06481:intron | 35.0% |
| AACTTTACCAACTTCCATGG+AGG | + | chr3.2:79335310-79335329 | MS.gene06481:intron | 40.0% | |
| ATCCCAGAAAAAGACGAAGA+AGG | + | chr3.2:79336297-79336316 | MS.gene06481:CDS | 40.0% | |
| ATGCAAGTGACCATAGACAA+TGG | - | chr3.2:79336010-79336029 | None:intergenic | 40.0% | |
| ATTTACACCTCCATGGAAGT+TGG | - | chr3.2:79335320-79335339 | None:intergenic | 40.0% | |
| CCAGACTTGAAAACTTACCT+AGG | + | chr3.2:79336509-79336528 | MS.gene06481:CDS | 40.0% | |
| CTCATGGTTTCCATTGTCTA+TGG | + | chr3.2:79335997-79336016 | MS.gene06481:intron | 40.0% | |
| GAAGCCCTGAAAACAAATTC+AGG | - | chr3.2:79334428-79334447 | None:intergenic | 40.0% | |
| GATCATCTTTCTTCTCCTGA+GGG | - | chr3.2:79336445-79336464 | None:intergenic | 40.0% | |
| GATTTGTCAAAGATGAGTGG+AGG | - | chr3.2:79336123-79336142 | None:intergenic | 40.0% | |
| GCTATGTAAAGAAGTTGGAC+AGG | + | chr3.2:79334924-79334943 | MS.gene06481:intron | 40.0% | |
| GGGACTCCATTAATCTTGAA+TGG | - | chr3.2:79336175-79336194 | None:intergenic | 40.0% | |
| GGTAGTACATTTATGGATGC+AGG | + | chr3.2:79335045-79335064 | MS.gene06481:intron | 40.0% | |
| GTAACAAGAAGAAGTCCAGA+AGG | - | chr3.2:79334527-79334546 | None:intergenic | 40.0% | |
| TATTGGTAGGAACTAAGCTC+AGG | + | chr3.2:79334221-79334240 | MS.gene06481:intron | 40.0% | |
| TCACAATAACTCCACAAAGG+GGG | - | chr3.2:79333900-79333919 | None:intergenic | 40.0% | |
| TCCCAGAAAAAGACGAAGAA+GGG | + | chr3.2:79336298-79336317 | MS.gene06481:CDS | 40.0% | |
| TCTGCTATGTATCACAAACG+CGG | + | chr3.2:79333571-79333590 | MS.gene06481:CDS | 40.0% | |
| TCTGGACTTCTTCTTGTTAC+CGG | + | chr3.2:79334527-79334546 | MS.gene06481:CDS | 40.0% | |
| TGATCATCTTTCTTCTCCTG+AGG | - | chr3.2:79336446-79336465 | None:intergenic | 40.0% | |
| TGTCCGAACTTGAACTTTAC+TGG | + | chr3.2:79335357-79335376 | MS.gene06481:intron | 40.0% | |
| TTTCCATTGTGTATGTCCAC+TGG | + | chr3.2:79335788-79335807 | MS.gene06481:intron | 40.0% | |
| TTTCTCAAACAGCTTCCTTC+TGG | + | chr3.2:79334509-79334528 | MS.gene06481:CDS | 40.0% | |
| TTTCTTCCTGCATTAGTGCT+GGG | + | chr3.2:79333958-79333977 | MS.gene06481:intron | 40.0% | |
| ! | AGGCCAGTAAAGTTCAAGTT+CGG | - | chr3.2:79335363-79335382 | None:intergenic | 40.0% |
| ! | TCCCTTCTTCGTCTTTTTCT+GGG | - | chr3.2:79336302-79336321 | None:intergenic | 40.0% |
| !! | ACAGTGTTGATTCTTCTTGC+TGG | + | chr3.2:79334461-79334480 | MS.gene06481:CDS | 40.0% |
| !! | TGAAGAAAGAGTACCAGCAT+TGG | + | chr3.2:79334173-79334192 | MS.gene06481:intron | 40.0% |
| !!! | ACTCTTGCGGTTCTTGTTTT+TGG | - | chr3.2:79333505-79333524 | None:intergenic | 40.0% |
| !!! | CCTAGGTAAGTTTTCAAGTC+TGG | - | chr3.2:79336512-79336531 | None:intergenic | 40.0% |
| AAGTAGGTTTAGCATGCCAG+TGG | - | chr3.2:79335807-79335826 | None:intergenic | 45.0% | |
| AGAAGAATCAACACTGTCCC+TGG | - | chr3.2:79334458-79334477 | None:intergenic | 45.0% | |
| AGGTGAGCAGAGTTATGTGT+TGG | + | chr3.2:79335516-79335535 | MS.gene06481:intron | 45.0% | |
| ATGCCAGTGGACATACACAA+TGG | - | chr3.2:79335794-79335813 | None:intergenic | 45.0% | |
| GATCAAAAGACTGTCGATGC+TGG | + | chr3.2:79336461-79336480 | MS.gene06481:CDS | 45.0% | |
| GGTGAGCAGAGTTATGTGTT+GGG | + | chr3.2:79335517-79335536 | MS.gene06481:intron | 45.0% | |
| GTAAAACTTAGGCGGCTTCT+CGG | - | chr3.2:79333671-79333690 | None:intergenic | 45.0% | |
| GTCTGTTAAAACTGGGTGGT+GGG | + | chr3.2:79333935-79333954 | MS.gene06481:intron | 45.0% | |
| GTGAGCAGAGTTATGTGTTG+GGG | + | chr3.2:79335518-79335537 | MS.gene06481:intron | 45.0% | |
| GTTTCTTCCTGCATTAGTGC+TGG | + | chr3.2:79333957-79333976 | MS.gene06481:intron | 45.0% | |
| TCAGGGCTTCTATTACTCCA+GGG | + | chr3.2:79334438-79334457 | MS.gene06481:intron | 45.0% | |
| TGAAAACTTACCTAGGTGCC+AGG | + | chr3.2:79336516-79336535 | MS.gene06481:CDS | 45.0% | |
| TGAGCAGAGTTATGTGTTGG+GGG | + | chr3.2:79335519-79335538 | MS.gene06481:intron | 45.0% | |
| TGTCTGTTAAAACTGGGTGG+TGG | + | chr3.2:79333934-79333953 | MS.gene06481:intron | 45.0% | |
| TTCAGGGCTTCTATTACTCC+AGG | + | chr3.2:79334437-79334456 | MS.gene06481:intron | 45.0% | |
| ! | CAAGTCTGGAACACTGTCAA+TGG | - | chr3.2:79336498-79336517 | None:intergenic | 45.0% |
| ! | CTCCCTTCTTCGTCTTTTTC+TGG | - | chr3.2:79336303-79336322 | None:intergenic | 45.0% |
| !! | CGAGTTCTTTGAGGCAGATA+AGG | + | chr3.2:79336327-79336346 | MS.gene06481:CDS | 45.0% |
| !! | GTTCTTTGAGGCAGATAAGG+AGG | + | chr3.2:79336330-79336349 | MS.gene06481:CDS | 45.0% |
| !!! | AACCTGAGCTTAGTGGGTTT+TGG | - | chr3.2:79333736-79333755 | None:intergenic | 45.0% |
| !!! | GTTTTGGCTTGTGCTTGTTG+CGG | - | chr3.2:79333720-79333739 | None:intergenic | 45.0% |
| ACCTGCCTTCAAGGAAAACC+TGG | - | chr3.2:79336537-79336556 | None:intergenic | 50.0% | |
| AGCCAAAACCCACTAAGCTC+AGG | + | chr3.2:79333731-79333750 | MS.gene06481:CDS | 50.0% | |
| AGGTGTGAAGCCACATGAGT+TGG | + | chr3.2:79336553-79336572 | MS.gene06481:CDS | 50.0% | |
| CCCTGATCAAGTCAGGGTTA+CGG | - | chr3.2:79333531-79333550 | None:intergenic | 50.0% | |
| CGATACCCCTGATCAAGTCA+GGG | - | chr3.2:79333537-79333556 | None:intergenic | 50.0% | |
| GTATCACAAACGCGGTCTCT+GGG | + | chr3.2:79333579-79333598 | MS.gene06481:CDS | 50.0% | |
| GTGACGAACCTGAGCTTAGT+GGG | - | chr3.2:79333742-79333761 | None:intergenic | 50.0% | |
| TCAAGGAAAACCTGGCACCT+AGG | - | chr3.2:79336529-79336548 | None:intergenic | 50.0% | |
| TGGGCAATCAAGGCTAAGCA+CGG | + | chr3.2:79333598-79333617 | MS.gene06481:CDS | 50.0% | |
| TGTATCACAAACGCGGTCTC+TGG | + | chr3.2:79333578-79333597 | MS.gene06481:CDS | 50.0% | |
| ! | AGGTGCCAGGTTTTCCTTGA+AGG | + | chr3.2:79336529-79336548 | MS.gene06481:CDS | 50.0% |
| ! | CCGTAACCCTGACTTGATCA+GGG | + | chr3.2:79333528-79333547 | MS.gene06481:CDS | 50.0% |
| ! | CCTGACTTGATCAGGGGTAT+CGG | + | chr3.2:79333535-79333554 | MS.gene06481:CDS | 50.0% |
| ! | CGTAACCCTGACTTGATCAG+GGG | + | chr3.2:79333529-79333548 | MS.gene06481:CDS | 50.0% |
| AGCCTGATTCACGCGTCTCA+AGG | - | chr3.2:79336197-79336216 | None:intergenic | 55.0% | |
| AGGGTTACGGCTCACTCTTG+CGG | - | chr3.2:79333518-79333537 | None:intergenic | 55.0% | |
| CATCAGCCCAGCACTAATGC+AGG | - | chr3.2:79333967-79333986 | None:intergenic | 55.0% | |
| CCGATACCCCTGATCAAGTC+AGG | - | chr3.2:79333538-79333557 | None:intergenic | 55.0% | |
| CCTGATTCACGCGTCTCAAG+GGG | - | chr3.2:79336195-79336214 | None:intergenic | 55.0% | |
| GAGTGGCTTCTTCACGTCGT+CGG | - | chr3.2:79333698-79333717 | None:intergenic | 55.0% | |
| GCAATCAAGGCTAAGCACGG+TGG | + | chr3.2:79333601-79333620 | MS.gene06481:CDS | 55.0% | |
| GCCTGATTCACGCGTCTCAA+GGG | - | chr3.2:79336196-79336215 | None:intergenic | 55.0% | |
| GGGAGAGAGCGAGTTCTTTG+AGG | + | chr3.2:79336318-79336337 | MS.gene06481:CDS | 55.0% | |
| GGTGACGAACCTGAGCTTAG+TGG | - | chr3.2:79333743-79333762 | None:intergenic | 55.0% | |
| TCGGCGGGGTAAAACTTAGG+CGG | - | chr3.2:79333679-79333698 | None:intergenic | 55.0% | |
| TCGTCGGCGGGGTAAAACTT+AGG | - | chr3.2:79333682-79333701 | None:intergenic | 55.0% | |
| TGGCTTCACACCTGCCTTCA+AGG | - | chr3.2:79336546-79336565 | None:intergenic | 55.0% | |
| ! | GCCAGGTTTTCCTTGAAGGC+AGG | + | chr3.2:79336533-79336552 | MS.gene06481:CDS | 55.0% |
| ! | GCCGTAACCCTGACTTGATC+AGG | + | chr3.2:79333527-79333546 | MS.gene06481:CDS | 55.0% |
| !! | GGACAAAAAGGTGCTCCCTC+AGG | + | chr3.2:79336427-79336446 | MS.gene06481:intron | 55.0% |
| AACTTAGGCGGCTTCTCGGC+CGG | - | chr3.2:79333667-79333686 | None:intergenic | 60.0% | |
| ACGCGGTCTCTGGGCAATCA+AGG | + | chr3.2:79333588-79333607 | MS.gene06481:CDS | 60.0% | |
| CCCCTTGAGACGCGTGAATC+AGG | + | chr3.2:79336192-79336211 | MS.gene06481:CDS | 60.0% | |
| TGGCTTCTTCACGTCGTCGG+CGG | - | chr3.2:79333695-79333714 | None:intergenic | 60.0% | |
| ! | GGCTTGTGCTTGTTGCGGAG+TGG | - | chr3.2:79333715-79333734 | None:intergenic | 60.0% |
| CAGGCTTAGCGACGGGATCG+TGG | - | chr3.2:79333639-79333658 | None:intergenic | 65.0% | |
| CGGAGCTGCAGGCTTAGCGA+CGG | - | chr3.2:79333647-79333666 | None:intergenic | 65.0% | |
| CGTCGCTAAGCCTGCAGCTC+CGG | + | chr3.2:79333645-79333664 | MS.gene06481:CDS | 65.0% | |
| GCTTCTTCACGTCGTCGGCG+GGG | - | chr3.2:79333693-79333712 | None:intergenic | 65.0% | |
| GGAGCTGCAGGCTTAGCGAC+GGG | - | chr3.2:79333646-79333665 | None:intergenic | 65.0% | |
| GGCTTCTTCACGTCGTCGGC+GGG | - | chr3.2:79333694-79333713 | None:intergenic | 65.0% | |
| TAGCGACGGGATCGTGGCGA+GGG | - | chr3.2:79333633-79333652 | None:intergenic | 65.0% | |
| TTAGCGACGGGATCGTGGCG+AGG | - | chr3.2:79333634-79333653 | None:intergenic | 65.0% | |
| GGCTTCTCGGCCGGAGCTGC+AGG | - | chr3.2:79333658-79333677 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 79333496 | 79336583 | 79333496 | ID=MS.gene06481 |
| chr3.2 | mRNA | 79333496 | 79336583 | 79333496 | ID=MS.gene06481.t1;Parent=MS.gene06481 |
| chr3.2 | exon | 79333496 | 79333752 | 79333496 | ID=MS.gene06481.t1.exon1;Parent=MS.gene06481.t1 |
| chr3.2 | CDS | 79333496 | 79333752 | 79333496 | ID=cds.MS.gene06481.t1;Parent=MS.gene06481.t1 |
| chr3.2 | exon | 79334442 | 79334548 | 79334442 | ID=MS.gene06481.t1.exon2;Parent=MS.gene06481.t1 |
| chr3.2 | CDS | 79334442 | 79334548 | 79334442 | ID=cds.MS.gene06481.t1;Parent=MS.gene06481.t1 |
| chr3.2 | exon | 79336170 | 79336351 | 79336170 | ID=MS.gene06481.t1.exon3;Parent=MS.gene06481.t1 |
| chr3.2 | CDS | 79336170 | 79336351 | 79336170 | ID=cds.MS.gene06481.t1;Parent=MS.gene06481.t1 |
| chr3.2 | exon | 79336428 | 79336583 | 79336428 | ID=MS.gene06481.t1.exon4;Parent=MS.gene06481.t1 |
| chr3.2 | CDS | 79336428 | 79336583 | 79336428 | ID=cds.MS.gene06481.t1;Parent=MS.gene06481.t1 |
| Gene Sequence |
| Protein sequence |
