Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047734.t1 | XP_003611899.2 | 90.5 | 1006 | 91 | 3 | 1 | 1001 | 1 | 1006 | 0.00E+00 | 1362.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047734.t1 | Q03701 | 32.9 | 693 | 368 | 15 | 164 | 835 | 202 | 818 | 2.0e-88 | 328.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047734.t1 | G7KAU4 | 90.5 | 1006 | 91 | 3 | 1 | 1001 | 1 | 1006 | 0.0e+00 | 1362.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047734.t1 | MTR_5g019130 | 95.082 | 1037 | 35 | 4 | 1 | 1032 | 1 | 1026 | 0.0 | 1987 |
| MS.gene047734.t1 | MTR_4g119670 | 92.471 | 1036 | 70 | 4 | 1 | 1032 | 1 | 1032 | 0.0 | 1698 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047734.t1 | AT1G72440 | 59.326 | 949 | 340 | 15 | 9 | 917 | 5 | 947 | 0.0 | 1042 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATACATACCTTCATATT+TGG | 0.109456 | 5.3:-10957529 | None:intergenic |
| TTAAAGCCAGACCACCTTTA+TGG | 0.167130 | 5.3:+10959725 | MS.gene047734:CDS |
| CCCTTCTACTTCTCTGGTAT+TGG | 0.192561 | 5.3:+10955870 | MS.gene047734:CDS |
| GAAAGTGGAGACGAAGAATT+TGG | 0.210658 | 5.3:+10954722 | MS.gene047734:CDS |
| TTAGATGCTGCTTTATTATC+TGG | 0.214487 | 5.3:-10957469 | None:intergenic |
| AACGATGCTAATAAGGAAAA+AGG | 0.223521 | 5.3:+10954585 | MS.gene047734:CDS |
| GATTTAGTGGCCGCTGTATC+AGG | 0.238783 | 5.3:-10955820 | None:intergenic |
| CCTTCTACTTCTCTGGTATT+GGG | 0.251704 | 5.3:+10955871 | MS.gene047734:CDS |
| CCATGCCAAGTGGTTTGTTT+TGG | 0.263037 | 5.3:-10961352 | None:intergenic |
| AGTGATGGAGAGATAGATAT+TGG | 0.265848 | 5.3:+10962203 | MS.gene047734:CDS |
| GTTAAAGAGAGGTCGTTTAA+AGG | 0.285273 | 5.3:-10961298 | None:intergenic |
| AGCTTGAAGGTAAGGTGATT+GGG | 0.290943 | 5.3:+10954691 | MS.gene047734:CDS |
| GAATGGCCATCTTTAGTTTC+AGG | 0.295687 | 5.3:-10955848 | None:intergenic |
| TTTCTCTTTCGGCCTCATTT+AGG | 0.298118 | 5.3:+10957933 | MS.gene047734:CDS |
| ATGGCAAGAACTCTTCTTTC+TGG | 0.301415 | 5.3:+10961250 | MS.gene047734:CDS |
| TCCTGGCAACACAGGCTTCT+TGG | 0.304033 | 5.3:-10960212 | None:intergenic |
| GATTCTGCTGATCCCACTTT+GGG | 0.305519 | 5.3:+10962107 | MS.gene047734:CDS |
| GGTGTTTGGTTTGAGGATGC+AGG | 0.306122 | 5.3:+10954666 | MS.gene047734:CDS |
| ATTAGACGTTTCGCTACTTT+TGG | 0.307380 | 5.3:-10958591 | None:intergenic |
| ATTGGGCAACGATGCTAATA+AGG | 0.312912 | 5.3:+10954578 | MS.gene047734:CDS |
| GACACAGAGAGCCATCTTAT+TGG | 0.314342 | 5.3:+10960248 | MS.gene047734:CDS |
| TCTTGCCTTGGATGTGTTCA+TGG | 0.322013 | 5.3:-10959372 | None:intergenic |
| ATCACTGGCTATCTGATTCT+TGG | 0.336231 | 5.3:-10959306 | None:intergenic |
| TGCTGCGGTTGTTGTTTCTT+TGG | 0.336909 | 5.3:-10954429 | None:intergenic |
| ATCGTTGAAACCTGAAGAAT+TGG | 0.341352 | 5.3:-10954385 | None:intergenic |
| GTGATGGAGAGATAGATATT+GGG | 0.345383 | 5.3:+10962204 | MS.gene047734:CDS |
| TGCGATTCTGAGAACTCTTC+GGG | 0.355171 | 5.3:-10958836 | None:intergenic |
| CAACTTCGTCTCACCAATAA+AGG | 0.356172 | 5.3:+10958561 | MS.gene047734:CDS |
| TGAAGAGTTTGAACATATAC+TGG | 0.359143 | 5.3:+10962421 | MS.gene047734:CDS |
| TGTAAGTTGGTGGGAGTTAT+TGG | 0.359624 | 5.3:+10961192 | MS.gene047734:CDS |
| GCCATTCCCTTCTACTTCTC+TGG | 0.360746 | 5.3:+10955864 | MS.gene047734:CDS |
| GGCAGCTGGAAGCAGGAGTT+TGG | 0.367926 | 5.3:-10959351 | None:intergenic |
| TGAAACCTGAAGAATTGGTT+TGG | 0.369361 | 5.3:-10954380 | None:intergenic |
| GTTGAGAAGAAGAGGGAGTT+GGG | 0.370926 | 5.3:+10954762 | MS.gene047734:CDS |
| GTATACATACCTTCATATTT+GGG | 0.371834 | 5.3:-10957528 | None:intergenic |
| CATCATCATCTTCCAGTATA+TGG | 0.372359 | 5.3:-10962466 | None:intergenic |
| TGACTATGATTATGATGATT+TGG | 0.374354 | 5.3:+10962139 | MS.gene047734:CDS |
| AATTCACTTGCTTTCATCAA+TGG | 0.379765 | 5.3:-10954642 | None:intergenic |
| GAGCTTGAAGGTAAGGTGAT+TGG | 0.383250 | 5.3:+10954690 | MS.gene047734:CDS |
| CTCAGAATCGCATGCGGAAA+TGG | 0.385808 | 5.3:+10958847 | MS.gene047734:CDS |
| CGGTTGTTGTTTCTTTGGTT+TGG | 0.388571 | 5.3:-10954424 | None:intergenic |
| GATGTCTTCTGTATTTATCA+AGG | 0.389413 | 5.3:-10954301 | None:intergenic |
| AGAAGAATCTGTGTCAGAAT+TGG | 0.390014 | 5.3:-10960035 | None:intergenic |
| AGCTTTCCTAGATAAATTCA+TGG | 0.391541 | 5.3:+10961321 | MS.gene047734:CDS |
| CGACGATTTAGATGATGCTT+TGG | 0.391836 | 5.3:+10960096 | MS.gene047734:CDS |
| TCTTTGTTTACCTGCTTGAC+AGG | 0.392157 | 5.3:-10961391 | None:intergenic |
| GATAGATATACCCTCAGATA+TGG | 0.393332 | 5.3:+10962244 | MS.gene047734:CDS |
| GCTTCTTTCGCTTCTTCACT+TGG | 0.394653 | 5.3:+10954345 | MS.gene047734:CDS |
| TGAAGAATTGGTTTGGGAAG+TGG | 0.397678 | 5.3:-10954373 | None:intergenic |
| CCTGCTTAGTAGAACATATA+TGG | 0.402570 | 5.3:-10956531 | None:intergenic |
| TTAAAGAGAGGTCGTTTAAA+GGG | 0.402956 | 5.3:-10961297 | None:intergenic |
| GGATTCTGCTGATCCCACTT+TGG | 0.405499 | 5.3:+10962106 | MS.gene047734:CDS |
| CCCATCACTACTTACCATAA+AGG | 0.407345 | 5.3:-10959739 | None:intergenic |
| TGAAGAGATTGAGGATCTCT+TGG | 0.407389 | 5.3:+10962085 | MS.gene047734:CDS |
| ATGCGATTCTGAGAACTCTT+CGG | 0.409163 | 5.3:-10958837 | None:intergenic |
| GTTTCAGGAATGTGATTTAG+TGG | 0.415456 | 5.3:-10955833 | None:intergenic |
| GCTTTCATCAATGGAAGCTT+AGG | 0.417325 | 5.3:-10954633 | None:intergenic |
| CCCAATACCAGAGAAGTAGA+AGG | 0.419176 | 5.3:-10955871 | None:intergenic |
| AGGGTCTTCAATTTACAATC+TGG | 0.421781 | 5.3:-10955800 | None:intergenic |
| AACTCTTCATAACTTGCAAA+TGG | 0.423550 | 5.3:-10962407 | None:intergenic |
| AGAGACCTCAAATTTGCAAC+AGG | 0.424866 | 5.3:-10954927 | None:intergenic |
| ATAATCCTGTTGCAAATTTG+AGG | 0.425770 | 5.3:+10954922 | MS.gene047734:CDS |
| GGCATGGCGCTTTCCGACCT+TGG | 0.426298 | 5.3:-10955132 | None:intergenic |
| TGTTGAGAAGAAGAGGGAGT+TGG | 0.428215 | 5.3:+10954761 | MS.gene047734:CDS |
| TCGTTGCCCAATGACAAAAC+AGG | 0.435364 | 5.3:-10954567 | None:intergenic |
| ATTGATGAAAGCAAGTGAAT+TGG | 0.435756 | 5.3:+10954644 | MS.gene047734:CDS |
| ATCTTAACAACCTCTTGGTT+GGG | 0.438196 | 5.3:+10961871 | MS.gene047734:CDS |
| TGGTCTGGCTTTAAATAGTT+CGG | 0.438901 | 5.3:-10959716 | None:intergenic |
| GGAAAGCGCCATGCCTTGTC+AGG | 0.439091 | 5.3:+10955140 | MS.gene047734:CDS |
| GCTTCTATCAGCTCTCTTAA+CGG | 0.441332 | 5.3:+10958877 | MS.gene047734:CDS |
| ACTTCCCAAACCAATTCTTC+AGG | 0.446083 | 5.3:+10954375 | MS.gene047734:CDS |
| TTGATTTCTACTCAGAGGTC+TGG | 0.448923 | 5.3:+10954855 | MS.gene047734:CDS |
| AAAGTGGAGACGAAGAATTT+GGG | 0.449858 | 5.3:+10954723 | MS.gene047734:CDS |
| AAGCAAGTGAATTGGGTGTT+TGG | 0.451712 | 5.3:+10954652 | MS.gene047734:CDS |
| TTAGAGCTGGTAGCATGTCT+CGG | 0.455681 | 5.3:-10956219 | None:intergenic |
| GAAACCTGAAGAATTGGTTT+GGG | 0.456168 | 5.3:-10954379 | None:intergenic |
| TACTTACCATAAAGGTGGTC+TGG | 0.457202 | 5.3:-10959731 | None:intergenic |
| GATTGGGGAAGGGAAGAAAG+TGG | 0.458607 | 5.3:+10954707 | MS.gene047734:CDS |
| CGATTTAGATGATGCTTTGG+AGG | 0.458661 | 5.3:+10960099 | MS.gene047734:CDS |
| TGAATTGGGTGTTTGGTTTG+AGG | 0.459108 | 5.3:+10954659 | MS.gene047734:CDS |
| GTGTTTGGTTTGAGGATGCA+GGG | 0.463351 | 5.3:+10954667 | MS.gene047734:CDS |
| GCCAAGAAGCCTGTGTTGCC+AGG | 0.463932 | 5.3:+10960211 | MS.gene047734:CDS |
| GATCTTAACAACCTCTTGGT+TGG | 0.466679 | 5.3:+10961870 | MS.gene047734:CDS |
| TGCTGAGAAAGACCATATAC+TGG | 0.469118 | 5.3:+10962454 | MS.gene047734:CDS |
| ATGTCTTCTGTATTTATCAA+GGG | 0.469129 | 5.3:-10954300 | None:intergenic |
| GAAGGTAAGGTGATTGGGGA+AGG | 0.470403 | 5.3:+10954696 | MS.gene047734:CDS |
| TTATTCTAAGAGCAATGAAA+AGG | 0.470835 | 5.3:+10959506 | MS.gene047734:CDS |
| TAGAGCTGGTAGCATGTCTC+GGG | 0.472971 | 5.3:-10956218 | None:intergenic |
| TCATCATCAATGGCAGCAAA+TGG | 0.472981 | 5.3:-10962290 | None:intergenic |
| CTTTAAATAGTTCGGAAAGA+AGG | 0.474046 | 5.3:-10959708 | None:intergenic |
| GGTTTATTTGATACCGCTAC+AGG | 0.475221 | 5.3:-10959974 | None:intergenic |
| AAGAAGCTACTTCAGATTTG+AGG | 0.477305 | 5.3:-10954329 | None:intergenic |
| TCAGCTAGTGAAAGAATCTC+TGG | 0.477758 | 5.3:-10961894 | None:intergenic |
| GAGGATGCAGGGGAGCTTGA+AGG | 0.478332 | 5.3:+10954678 | MS.gene047734:CDS |
| ATTGATGGCACAATTTGCTC+AGG | 0.481174 | 5.3:+10954791 | MS.gene047734:CDS |
| TGTTCATGGCAGCTGGAAGC+AGG | 0.484577 | 5.3:-10959358 | None:intergenic |
| AAGATCATTGTCATCATCAA+TGG | 0.485664 | 5.3:-10962300 | None:intergenic |
| TTGGATGTGTTCATGGCAGC+TGG | 0.486545 | 5.3:-10959365 | None:intergenic |
| TCGACTGTTTGATTGTTGCT+TGG | 0.487407 | 5.3:-10958779 | None:intergenic |
| GGGAGGAATGTTTGAAGCAG+AGG | 0.487467 | 5.3:+10955891 | MS.gene047734:CDS |
| TGCAGGGGAGCTTGAAGGTA+AGG | 0.488418 | 5.3:+10954683 | MS.gene047734:CDS |
| GTCTCAGCACCCAAATATGA+AGG | 0.489977 | 5.3:+10957519 | MS.gene047734:CDS |
| TTATGGAAAACAAGATCCTC+TGG | 0.491214 | 5.3:-10961930 | None:intergenic |
| TTCAAGAATTATTTATTGCA+AGG | 0.492952 | 5.3:+10955174 | MS.gene047734:CDS |
| GCAGTGTCACCATTCTGAAC+AGG | 0.493228 | 5.3:-10960013 | None:intergenic |
| CCATATATGTTCTACTAAGC+AGG | 0.500018 | 5.3:+10956531 | MS.gene047734:CDS |
| TTAGATGATGCTTTGGAGGA+TGG | 0.502125 | 5.3:+10960103 | MS.gene047734:CDS |
| CGCATGCGGAAATGGACTCC+AGG | 0.503770 | 5.3:+10958855 | MS.gene047734:CDS |
| GATGGATCTTAACAACCTCT+TGG | 0.505417 | 5.3:+10961866 | MS.gene047734:intron |
| TTGATGAAAGCAAGTGAATT+GGG | 0.509804 | 5.3:+10954645 | MS.gene047734:CDS |
| CTTTATTGGTGAGACGAAGT+TGG | 0.511857 | 5.3:-10958560 | None:intergenic |
| CTCAGGATTATGAATCGACT+AGG | 0.512023 | 5.3:+10954808 | MS.gene047734:CDS |
| CAAGCAAATTACCAATAAGA+TGG | 0.512274 | 5.3:-10960259 | None:intergenic |
| ATTTAGTGGCCGCTGTATCA+GGG | 0.516236 | 5.3:-10955819 | None:intergenic |
| GGAGTTGGGTGAGAGATTGA+TGG | 0.518698 | 5.3:+10954776 | MS.gene047734:CDS |
| TCATAATCATAGTCACCGTC+TGG | 0.518817 | 5.3:-10962131 | None:intergenic |
| AGACGAAGAATTTGGGAGAG+TGG | 0.521453 | 5.3:+10954730 | MS.gene047734:CDS |
| GCTTCATCACTCGAGACAAA+AGG | 0.522287 | 5.3:-10959095 | None:intergenic |
| CACATTCCTGAAACTAAAGA+TGG | 0.523231 | 5.3:+10955842 | MS.gene047734:CDS |
| TGATGGAGAGATAGATATTG+GGG | 0.523914 | 5.3:+10962205 | MS.gene047734:CDS |
| AAGAATTTGGGAGAGTGGAA+AGG | 0.524777 | 5.3:+10954735 | MS.gene047734:CDS |
| GAGGATGATGATGACTTGAT+TGG | 0.530506 | 5.3:+10962173 | MS.gene047734:CDS |
| GCTTGAAGGTAAGGTGATTG+GGG | 0.531413 | 5.3:+10954692 | MS.gene047734:CDS |
| TCAGATTGAACCTGTCAAGC+AGG | 0.533611 | 5.3:+10961381 | MS.gene047734:CDS |
| TAAGAGAGCTGATAGAAGCC+TGG | 0.534189 | 5.3:-10958873 | None:intergenic |
| CTTCAAAGCCTGACAAGGCA+TGG | 0.535279 | 5.3:-10955148 | None:intergenic |
| AAGTGATAATGAAGAGATTG+AGG | 0.536700 | 5.3:+10962076 | MS.gene047734:CDS |
| TATTCTAAGAGCAATGAAAA+GGG | 0.541088 | 5.3:+10959507 | MS.gene047734:CDS |
| ACTACCAATTGGAAAAGTAC+TGG | 0.542174 | 5.3:-10959143 | None:intergenic |
| GGCTGTGGTTGTTAATGAGG+TGG | 0.544078 | 5.3:+10957905 | MS.gene047734:intron |
| TATTTGGGTGCTGAGACAAA+AGG | 0.545659 | 5.3:-10957513 | None:intergenic |
| ATGCAGATCGTGTAAGTTGG+TGG | 0.548231 | 5.3:+10961182 | MS.gene047734:CDS |
| ATAGTTCGGAAAGAAGGAAA+AGG | 0.550072 | 5.3:-10959702 | None:intergenic |
| AACAGTCGATAAAAGCGGTA+AGG | 0.550775 | 5.3:+10958793 | MS.gene047734:CDS |
| ATCATCCTCTTCCATATCTG+AGG | 0.556175 | 5.3:-10962255 | None:intergenic |
| AAGGTAAGGTGATTGGGGAA+GGG | 0.556243 | 5.3:+10954697 | MS.gene047734:CDS |
| GCAGGCTGTGGTTGTTAATG+AGG | 0.559465 | 5.3:+10957902 | MS.gene047734:intron |
| TCAGGATTATGAATCGACTA+GGG | 0.563004 | 5.3:+10954809 | MS.gene047734:CDS |
| GAAGAAATCGAACGATGAAG+AGG | 0.564010 | 5.3:+10961998 | MS.gene047734:CDS |
| GTTTCCGTTGTAGACAATGT+TGG | 0.564024 | 5.3:-10961275 | None:intergenic |
| TTGAACATCAATGATGTCAT+CGG | 0.564271 | 5.3:-10959117 | None:intergenic |
| TGTCGTGGATCATAGCCTCC+TGG | 0.567265 | 5.3:-10960229 | None:intergenic |
| CGTTGCCCAATGACAAAACA+GGG | 0.569601 | 5.3:-10954566 | None:intergenic |
| CGTCTCACCAATAAAGGAGA+TGG | 0.570373 | 5.3:+10958567 | MS.gene047734:CDS |
| CTTGCCATGGTGGCAACTGA+AGG | 0.572750 | 5.3:-10961235 | None:intergenic |
| AAGAAGGAAAAGGCATGCAC+AGG | 0.573490 | 5.3:-10959692 | None:intergenic |
| CCAAAACAAACCACTTGGCA+TGG | 0.574328 | 5.3:+10961352 | MS.gene047734:CDS |
| GCAATGCAGATCGTGTAAGT+TGG | 0.578502 | 5.3:+10961179 | MS.gene047734:intron |
| TCTGTTGCCTCAGATATGAA+CGG | 0.580468 | 5.3:+10956170 | MS.gene047734:intron |
| TCATAGCCTCCTGGCAACAC+AGG | 0.581936 | 5.3:-10960220 | None:intergenic |
| TGCAGATCGTGTAAGTTGGT+GGG | 0.584256 | 5.3:+10961183 | MS.gene047734:CDS |
| GATGGCGATGATGAGGTTGA+TGG | 0.584331 | 5.3:+10962044 | MS.gene047734:CDS |
| TTGATTGGTGATGTTAGTGA+TGG | 0.587595 | 5.3:+10962188 | MS.gene047734:CDS |
| TCTACTTCTCTGGTATTGGG+AGG | 0.588900 | 5.3:+10955874 | MS.gene047734:CDS |
| AAGTGCTTCAAAGCCTGACA+AGG | 0.591722 | 5.3:-10955153 | None:intergenic |
| TGTCCGCGTGGTCCTAAATG+AGG | 0.594661 | 5.3:-10957945 | None:intergenic |
| TTGCCATGGTGGCAACTGAA+GGG | 0.599154 | 5.3:-10961234 | None:intergenic |
| TATACCCTCAGATATGGAAG+AGG | 0.600500 | 5.3:+10962250 | MS.gene047734:CDS |
| AGCTGGTAGCATGTCTCGGG+AGG | 0.600878 | 5.3:-10956215 | None:intergenic |
| TCTAGGAATGGTGACATCCA+AGG | 0.600998 | 5.3:+10955115 | MS.gene047734:intron |
| AGGCATGCACAGGCATATTG+TGG | 0.601846 | 5.3:-10959682 | None:intergenic |
| AGCACGGTAAAATCGATCAC+TGG | 0.602678 | 5.3:-10959321 | None:intergenic |
| AGATGTTGATTTCTACTCAG+AGG | 0.603125 | 5.3:+10954850 | MS.gene047734:CDS |
| TGATTTGGAAGTAGCTAATG+AGG | 0.609378 | 5.3:+10962154 | MS.gene047734:CDS |
| CCAATACCAGAGAAGTAGAA+GGG | 0.611596 | 5.3:-10955870 | None:intergenic |
| TAAGATGGCTCTCTGTGTCG+TGG | 0.612359 | 5.3:-10960244 | None:intergenic |
| ACCAGAGAAGTAGAAGGGAA+TGG | 0.613560 | 5.3:-10955865 | None:intergenic |
| GGCGATGATGAGGTTGATGG+TGG | 0.613658 | 5.3:+10962047 | MS.gene047734:CDS |
| TGATGCTGATGGCGATGATG+AGG | 0.614078 | 5.3:+10962037 | MS.gene047734:CDS |
| AAGAAGAGTTCTTGCCATGG+TGG | 0.620006 | 5.3:-10961245 | None:intergenic |
| TCATCCTCTTCCATATCTGA+GGG | 0.623798 | 5.3:-10962254 | None:intergenic |
| TCACCGTCTGGTCCCAAAGT+GGG | 0.623980 | 5.3:-10962119 | None:intergenic |
| GATGACAATGATCTTGACAT+AGG | 0.624826 | 5.3:+10962308 | MS.gene047734:CDS |
| TGTTTGGTTTGAGGATGCAG+GGG | 0.624996 | 5.3:+10954668 | MS.gene047734:CDS |
| ACACCCTTCAGTTGCCACCA+TGG | 0.625272 | 5.3:+10961231 | MS.gene047734:CDS |
| AAGCTACTTCAGATTTGAGG+AGG | 0.625454 | 5.3:-10954326 | None:intergenic |
| CTAGGAAAGCTGTTAAAGAG+AGG | 0.629774 | 5.3:-10961309 | None:intergenic |
| AAACAAACCACTTGGCATGG+TGG | 0.630983 | 5.3:+10961355 | MS.gene047734:CDS |
| AATTGAAGACCCTGATACAG+CGG | 0.631384 | 5.3:+10955810 | MS.gene047734:CDS |
| GAGTTTGAACATATACTGGA+AGG | 0.631951 | 5.3:+10962425 | MS.gene047734:CDS |
| AAGGTTGGACAAGTGATAGT+CGG | 0.636604 | 5.3:-10957494 | None:intergenic |
| ACAGGTAGAATATCACCACT+TGG | 0.636825 | 5.3:-10959995 | None:intergenic |
| GATATTCTACCTGTTCAGAA+TGG | 0.637554 | 5.3:+10960004 | MS.gene047734:CDS |
| GATCCCACTTTGGGACCAGA+CGG | 0.640420 | 5.3:+10962116 | MS.gene047734:CDS |
| AATCAAACAGTCGATAAAAG+CGG | 0.643176 | 5.3:+10958788 | MS.gene047734:CDS |
| TGGGTGCTGAGACAAAAGGT+TGG | 0.644567 | 5.3:-10957509 | None:intergenic |
| AGCTGCCATGAACACATCCA+AGG | 0.656639 | 5.3:+10959367 | MS.gene047734:CDS |
| GTCACCGTCTGGTCCCAAAG+TGG | 0.658221 | 5.3:-10962120 | None:intergenic |
| GAATCTCTGGCCCAACCAAG+AGG | 0.658588 | 5.3:-10961881 | None:intergenic |
| ATCACTACTTACCATAAAGG+TGG | 0.659598 | 5.3:-10959736 | None:intergenic |
| CTGAGAACCACCATGCCAAG+TGG | 0.660533 | 5.3:-10961362 | None:intergenic |
| GGAGTTTGGAGTACAAAGCA+CGG | 0.662469 | 5.3:-10959337 | None:intergenic |
| TCATTTGTCATATAGGAACA+CGG | 0.665736 | 5.3:+10959880 | MS.gene047734:intron |
| TTGCCCAATGACAAAACAGG+GGG | 0.666032 | 5.3:-10954564 | None:intergenic |
| AGAAAGAAGAGTTCTTGCCA+TGG | 0.667608 | 5.3:-10961248 | None:intergenic |
| AACTGATGAGAAACCTGTAG+CGG | 0.669244 | 5.3:+10959961 | MS.gene047734:CDS |
| GCGGTATCAAATAAACCAAG+TGG | 0.673464 | 5.3:+10959980 | MS.gene047734:CDS |
| GGAATGGTGACATCCAAGGT+CGG | 0.678165 | 5.3:+10955119 | MS.gene047734:intron |
| AAGAAGCCTGTGTTGCCAGG+AGG | 0.688295 | 5.3:+10960214 | MS.gene047734:CDS |
| TGAAGTAGATGTACCACCAG+AGG | 0.689164 | 5.3:+10961914 | MS.gene047734:CDS |
| TGGAAAACAAGATCCTCTGG+TGG | 0.690247 | 5.3:-10961927 | None:intergenic |
| GGTGCCAACATTGTCTACAA+CGG | 0.690732 | 5.3:+10961271 | MS.gene047734:CDS |
| CAGGATTATGAATCGACTAG+GGG | 0.692459 | 5.3:+10954810 | MS.gene047734:CDS |
| CATGCACAGGCATATTGTGG+TGG | 0.703827 | 5.3:-10959679 | None:intergenic |
| ACAGAATGGTATTGTCCGCG+TGG | 0.707084 | 5.3:-10957957 | None:intergenic |
| AGAGTTCTCAGAATCGCATG+CGG | 0.710557 | 5.3:+10958841 | MS.gene047734:CDS |
| GTTGCCCAATGACAAAACAG+GGG | 0.754962 | 5.3:-10954565 | None:intergenic |
| CGGCCTCATTTAGGACCACG+CGG | 0.757705 | 5.3:+10957942 | MS.gene047734:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 10954273 | 10962553 | 10954273 | ID=MS.gene047734 |
| chr5.3 | mRNA | 10954273 | 10962553 | 10954273 | ID=MS.gene047734.t1;Parent=MS.gene047734 |
| chr5.3 | exon | 10954273 | 10954963 | 10954273 | ID=MS.gene047734.t1.exon1;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10954273 | 10954963 | 10954273 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10955120 | 10955195 | 10955120 | ID=MS.gene047734.t1.exon2;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10955120 | 10955195 | 10955120 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10955793 | 10955912 | 10955793 | ID=MS.gene047734.t1.exon3;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10955793 | 10955912 | 10955793 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10956183 | 10956258 | 10956183 | ID=MS.gene047734.t1.exon4;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10956183 | 10956258 | 10956183 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10956530 | 10956598 | 10956530 | ID=MS.gene047734.t1.exon5;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10956530 | 10956598 | 10956530 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10957460 | 10957540 | 10957460 | ID=MS.gene047734.t1.exon6;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10957460 | 10957540 | 10957460 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10957906 | 10957977 | 10957906 | ID=MS.gene047734.t1.exon7;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10957906 | 10957977 | 10957906 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10958546 | 10958638 | 10958546 | ID=MS.gene047734.t1.exon8;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10958546 | 10958638 | 10958546 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10958764 | 10958898 | 10958764 | ID=MS.gene047734.t1.exon9;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10958764 | 10958898 | 10958764 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10959077 | 10959160 | 10959077 | ID=MS.gene047734.t1.exon10;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10959077 | 10959160 | 10959077 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10959245 | 10959388 | 10959245 | ID=MS.gene047734.t1.exon11;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10959245 | 10959388 | 10959245 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10959487 | 10959576 | 10959487 | ID=MS.gene047734.t1.exon12;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10959487 | 10959576 | 10959487 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10959664 | 10959746 | 10959664 | ID=MS.gene047734.t1.exon13;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10959664 | 10959746 | 10959664 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10959895 | 10960269 | 10959895 | ID=MS.gene047734.t1.exon14;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10959895 | 10960269 | 10959895 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10961180 | 10961402 | 10961180 | ID=MS.gene047734.t1.exon15;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10961180 | 10961402 | 10961180 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| chr5.3 | exon | 10961867 | 10962553 | 10961867 | ID=MS.gene047734.t1.exon16;Parent=MS.gene047734.t1 |
| chr5.3 | CDS | 10961867 | 10962553 | 10961867 | ID=cds.MS.gene047734.t1;Parent=MS.gene047734.t1 |
| Gene Sequence |
| Protein sequence |
