Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010453.t1 | XP_003611899.2 | 90.5 | 1006 | 90 | 4 | 1 | 1000 | 1 | 1006 | 0.00E+00 | 1372.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010453.t1 | Q03701 | 33.3 | 693 | 365 | 15 | 164 | 835 | 202 | 818 | 2.8e-90 | 335.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010453.t1 | G7KAU4 | 90.5 | 1006 | 90 | 4 | 1 | 1000 | 1 | 1006 | 0.0e+00 | 1372.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010453.t1 | MTR_5g019130 | 92.430 | 1070 | 31 | 5 | 1 | 1064 | 1 | 1026 | 0.0 | 1972 |
| MS.gene010453.t1 | MTR_4g119670 | 92.217 | 1015 | 70 | 5 | 1 | 1010 | 1 | 1011 | 0.0 | 1690 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010453.t1 | AT1G72440 | 59.725 | 946 | 340 | 15 | 9 | 916 | 5 | 947 | 0.0 | 1050 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATACATACCTTCATATT+TGG | 0.109456 | 5.2:-10846640 | None:intergenic |
| TTAAAGCCAGACCACCTTTA+TGG | 0.167130 | 5.2:+10848834 | MS.gene010453:CDS |
| CCCTTCTACTTCTCTGGTAT+TGG | 0.192561 | 5.2:+10845113 | MS.gene010453:CDS |
| AACAATGCTAATAAGGAAAA+AGG | 0.199556 | 5.2:+10843822 | MS.gene010453:CDS |
| GAAAGTGGACGTGAAGAATT+TGG | 0.208751 | 5.2:+10843959 | MS.gene010453:CDS |
| TTAGATGCTGCTTTATTATC+TGG | 0.214487 | 5.2:-10846580 | None:intergenic |
| GATTTAGTGGCCGCTGTATC+AGG | 0.238783 | 5.2:-10845063 | None:intergenic |
| CCTTCTACTTCTCTGGTATT+GGG | 0.251704 | 5.2:+10845114 | MS.gene010453:CDS |
| CCATGCCAAGTGGTTTGTTT+TGG | 0.263037 | 5.2:-10850461 | None:intergenic |
| AGTGATGGAGAGATAGATAT+TGG | 0.265848 | 5.2:+10851341 | MS.gene010453:CDS |
| ATGGCAAGAACTCTTCTTTC+TGG | 0.274837 | 5.2:+10850359 | MS.gene010453:CDS |
| GTTAAAGAGAGGTCGTTTAA+AGG | 0.285273 | 5.2:-10850407 | None:intergenic |
| GACACAGAGAGCCCTCTTAT+TGG | 0.286786 | 5.2:+10849357 | MS.gene010453:CDS |
| ATTGGGCAACAATGCTAATA+AGG | 0.290871 | 5.2:+10843815 | MS.gene010453:CDS |
| GAATGGCCATCTTTAGTTTC+AGG | 0.295687 | 5.2:-10845091 | None:intergenic |
| TGTTGAGAAGAAGAGGGTTT+TGG | 0.297328 | 5.2:+10843998 | MS.gene010453:CDS |
| TTTCTCTTTCGGCCTCATTT+AGG | 0.298118 | 5.2:+10847044 | MS.gene010453:CDS |
| GATTCTGCTGATCCCACTTT+GGG | 0.305519 | 5.2:+10851245 | MS.gene010453:CDS |
| TCTTGCCTTGGATGTATTCA+TGG | 0.306589 | 5.2:-10848481 | None:intergenic |
| ATTAGACGTTTCGCTACTTT+TGG | 0.307380 | 5.2:-10847700 | None:intergenic |
| AGCTTGAAGGTAAGGTGATT+GGG | 0.311400 | 5.2:+10843928 | MS.gene010453:CDS |
| TGAAGAATTGGTTTGGGAAC+TGG | 0.329873 | 5.2:-10843610 | None:intergenic |
| ATCACTGGCTATCTGATTCT+TGG | 0.336231 | 5.2:-10848415 | None:intergenic |
| TGCTGCGGTTGTTGTTTCTT+TGG | 0.336909 | 5.2:-10843666 | None:intergenic |
| ATCGTTGAAACCTGAAGAAT+TGG | 0.341352 | 5.2:-10843622 | None:intergenic |
| GTGATGGAGAGATAGATATT+GGG | 0.345383 | 5.2:+10851342 | MS.gene010453:CDS |
| TCCTGGCAACACATGCTTCT+TGG | 0.347013 | 5.2:-10849321 | None:intergenic |
| TGCGATTCTGAGAACTCTTC+GGG | 0.355171 | 5.2:-10847945 | None:intergenic |
| CAACTTCGTCTCACCAATAA+AGG | 0.356172 | 5.2:+10847670 | MS.gene010453:CDS |
| TGAAGAGTTTGAACATATAC+TGG | 0.359143 | 5.2:+10851559 | MS.gene010453:CDS |
| TGTAAGTTGGTGGGAGTTAT+TGG | 0.359624 | 5.2:+10850301 | MS.gene010453:CDS |
| GCCATTCCCTTCTACTTCTC+TGG | 0.360746 | 5.2:+10845107 | MS.gene010453:CDS |
| GGCAGCTGGAAGCAGGAGTT+TGG | 0.367926 | 5.2:-10848460 | None:intergenic |
| TGAAACCTGAAGAATTGGTT+TGG | 0.369361 | 5.2:-10843617 | None:intergenic |
| CATCATCACCTTCCAGTATA+TGG | 0.369947 | 5.2:-10851637 | None:intergenic |
| CATCATCACCTTCCAGTATA+TGG | 0.369947 | 5.2:-10851670 | None:intergenic |
| GTATACATACCTTCATATTT+GGG | 0.371834 | 5.2:-10846639 | None:intergenic |
| CATCATCATCTTCCAGTATA+TGG | 0.372359 | 5.2:-10851604 | None:intergenic |
| CATCATCATCTTCCAGTATA+TGG | 0.372359 | 5.2:-10851703 | None:intergenic |
| TGACTATGATTATGATGATT+TGG | 0.374354 | 5.2:+10851277 | MS.gene010453:CDS |
| GCTTTCATCAATGGAAGCTT+TGG | 0.378809 | 5.2:-10843870 | None:intergenic |
| AATTCACTTGCTTTCATCAA+TGG | 0.379765 | 5.2:-10843879 | None:intergenic |
| CTCAGAATCGCATGCGGAAA+TGG | 0.385808 | 5.2:+10847956 | MS.gene010453:CDS |
| CGGTTGTTGTTTCTTTGGTT+TGG | 0.388571 | 5.2:-10843661 | None:intergenic |
| AGAAGAATCTGTGTCAGAAT+TGG | 0.390014 | 5.2:-10849144 | None:intergenic |
| AGCTTTCCTAGATAAATTCA+TGG | 0.391541 | 5.2:+10850430 | MS.gene010453:CDS |
| CGACGATTTAGATGATGCTT+TGG | 0.391836 | 5.2:+10849205 | MS.gene010453:CDS |
| TCTTTGTTTACCTGCTTGAC+AGG | 0.392157 | 5.2:-10850500 | None:intergenic |
| GATAGATATACCCTCAGATA+TGG | 0.393332 | 5.2:+10851382 | MS.gene010453:CDS |
| ATCTTAGCAACCTCTTGGTT+GGG | 0.399801 | 5.2:+10851012 | MS.gene010453:CDS |
| TCAAGCAAATTACCAATAAG+AGG | 0.401364 | 5.2:-10849369 | None:intergenic |
| CGTAAAATTGGTGGCAAAAG+TGG | 0.402326 | 5.2:+10851515 | MS.gene010453:CDS |
| TTAAAGAGAGGTCGTTTAAA+GGG | 0.402956 | 5.2:-10850406 | None:intergenic |
| GGATTCTGCTGATCCCACTT+TGG | 0.405499 | 5.2:+10851244 | MS.gene010453:CDS |
| CCCATCACTACTTACCATAA+AGG | 0.407345 | 5.2:-10848848 | None:intergenic |
| TGAAGAGATTGAGGATCTCT+TGG | 0.407389 | 5.2:+10851223 | MS.gene010453:CDS |
| ATGCGATTCTGAGAACTCTT+CGG | 0.409163 | 5.2:-10847946 | None:intergenic |
| CGACTGTTTGATTGTTGCTT+GGG | 0.410257 | 5.2:-10847887 | None:intergenic |
| GAGCTTGAAGGTAAGGTGAT+TGG | 0.412125 | 5.2:+10843927 | MS.gene010453:CDS |
| GATCTTAGCAACCTCTTGGT+TGG | 0.412474 | 5.2:+10851011 | MS.gene010453:CDS |
| CCTACTTAGTAGAACATATA+TGG | 0.414040 | 5.2:-10845788 | None:intergenic |
| GTTTCAGGAATGTGATTTAG+TGG | 0.415456 | 5.2:-10845076 | None:intergenic |
| CCCAATACCAGAGAAGTAGA+AGG | 0.419176 | 5.2:-10845114 | None:intergenic |
| AACTCTTCATAACTTGCAAA+TGG | 0.423550 | 5.2:-10851545 | None:intergenic |
| TCGACTGTTTGATTGTTGCT+TGG | 0.423825 | 5.2:-10847888 | None:intergenic |
| AGAGACCTCAAATTTGCAAC+AGG | 0.424866 | 5.2:-10844164 | None:intergenic |
| ATAATCCTGTTGCAAATTTG+AGG | 0.425770 | 5.2:+10844159 | MS.gene010453:CDS |
| GGCATGGCGCTTTCCGACCT+TGG | 0.426298 | 5.2:-10844368 | None:intergenic |
| TTGTTGCCCAATGACAAAAC+AGG | 0.430628 | 5.2:-10843804 | None:intergenic |
| GGTGTTTGGTTTGAGGATGC+AGG | 0.432342 | 5.2:+10843903 | MS.gene010453:CDS |
| GAAACCTGAAGAATTGGTTT+GGG | 0.432513 | 5.2:-10843616 | None:intergenic |
| ATTGATGAAAGCAAGTGAAT+TGG | 0.435756 | 5.2:+10843881 | MS.gene010453:CDS |
| TGGTCTGGCTTTAAATAGTT+CGG | 0.438901 | 5.2:-10848825 | None:intergenic |
| GGAAAGCGCCATGCCTTGTC+AGG | 0.439091 | 5.2:+10844376 | MS.gene010453:CDS |
| GCTTCTATCAGCTCTCTTAA+CGG | 0.441332 | 5.2:+10847986 | MS.gene010453:CDS |
| AGTTCCCAAACCAATTCTTC+AGG | 0.445185 | 5.2:+10843612 | MS.gene010453:CDS |
| TTGATTTCTACTCAGAGGTC+TGG | 0.448923 | 5.2:+10844092 | MS.gene010453:CDS |
| AAGCAAGTGAATTGGGTGTT+TGG | 0.451712 | 5.2:+10843889 | MS.gene010453:CDS |
| AAAGTGGACGTGAAGAATTT+GGG | 0.453917 | 5.2:+10843960 | MS.gene010453:CDS |
| TTAGAGCTGGTAGCATGTCT+CGG | 0.455681 | 5.2:-10845462 | None:intergenic |
| TGTATTTGTCAAGGGTTTGT+CGG | 0.457166 | 5.2:-10843529 | None:intergenic |
| TACTTACCATAAAGGTGGTC+TGG | 0.457202 | 5.2:-10848840 | None:intergenic |
| CGATTTAGATGATGCTTTGG+AGG | 0.458661 | 5.2:+10849208 | MS.gene010453:CDS |
| TGAATTGGGTGTTTGGTTTG+AGG | 0.459108 | 5.2:+10843896 | MS.gene010453:CDS |
| AGGGTCTTCAATTTACGATC+TGG | 0.465697 | 5.2:-10845043 | None:intergenic |
| TGCTGAGAAAGACCATATAC+TGG | 0.469118 | 5.2:+10851592 | MS.gene010453:CDS |
| TGCTGAGAAAGACCATATAC+TGG | 0.469118 | 5.2:+10851625 | MS.gene010453:CDS |
| TGCTGAGAAAGACCATATAC+TGG | 0.469118 | 5.2:+10851658 | MS.gene010453:CDS |
| TGCTGAGAAAGACCATATAC+TGG | 0.469118 | 5.2:+10851691 | MS.gene010453:CDS |
| GAAGGTAAGGTGATTGGGGA+AGG | 0.470403 | 5.2:+10843933 | MS.gene010453:CDS |
| TTATTCTAAGAGCAATGAAA+AGG | 0.470835 | 5.2:+10848615 | MS.gene010453:CDS |
| TAGAGCTGGTAGCATGTCTC+GGG | 0.472971 | 5.2:-10845461 | None:intergenic |
| TCATCATCAATGGCAGCAAA+TGG | 0.472981 | 5.2:-10851428 | None:intergenic |
| CTTTAAATAGTTCGGAAAGA+AGG | 0.474046 | 5.2:-10848817 | None:intergenic |
| GCCAAGAAGCATGTGTTGCC+AGG | 0.474813 | 5.2:+10849320 | MS.gene010453:CDS |
| GATGTCCTCTGTATTTGTCA+AGG | 0.474825 | 5.2:-10843538 | None:intergenic |
| GGTTTATTTGATACCGCTAC+AGG | 0.475221 | 5.2:-10849083 | None:intergenic |
| TCAGCTAGTGAAAGAATCTC+TGG | 0.477758 | 5.2:-10851035 | None:intergenic |
| GAGGATGCAGGTGAGCTTGA+AGG | 0.479450 | 5.2:+10843915 | MS.gene010453:CDS |
| ATGTCCTCTGTATTTGTCAA+GGG | 0.480134 | 5.2:-10843537 | None:intergenic |
| ATTGATGGCACAATTTGCTC+AGG | 0.481174 | 5.2:+10844028 | MS.gene010453:CDS |
| AAGATCATTGTCATCATCAA+TGG | 0.485664 | 5.2:-10851438 | None:intergenic |
| GGGAGGAATGTTTGAAGCAG+AGG | 0.487467 | 5.2:+10845134 | MS.gene010453:CDS |
| TGCAGGTGAGCTTGAAGGTA+AGG | 0.488418 | 5.2:+10843920 | MS.gene010453:CDS |
| TATTCATGGCAGCTGGAAGC+AGG | 0.489315 | 5.2:-10848467 | None:intergenic |
| GTCTCAGCACCCAAATATGA+AGG | 0.489977 | 5.2:+10846630 | MS.gene010453:CDS |
| TTCAAGAATTATTTATTGCA+AGG | 0.492952 | 5.2:+10844410 | MS.gene010453:CDS |
| GCAGTGTCACCATTCTGAAC+AGG | 0.493228 | 5.2:-10849122 | None:intergenic |
| TTATGGAAAACAAGATCCTC+TGG | 0.498674 | 5.2:-10851071 | None:intergenic |
| TTAGATGATGCTTTGGAGGA+TGG | 0.502125 | 5.2:+10849212 | MS.gene010453:CDS |
| CGCATGCGGAAATGGACTCC+AGG | 0.503770 | 5.2:+10847964 | MS.gene010453:CDS |
| TTGATGAAAGCAAGTGAATT+GGG | 0.509804 | 5.2:+10843882 | MS.gene010453:CDS |
| CTTTATTGGTGAGACGAAGT+TGG | 0.511857 | 5.2:-10847669 | None:intergenic |
| CTCAGGATTATGAATCGACT+AGG | 0.512023 | 5.2:+10844045 | MS.gene010453:CDS |
| ATTTAGTGGCCGCTGTATCA+GGG | 0.516236 | 5.2:-10845062 | None:intergenic |
| AAGAATTTGGGCGAGTGGAA+AGG | 0.516558 | 5.2:+10843972 | MS.gene010453:CDS |
| GATGGATCTTAGCAACCTCT+TGG | 0.518312 | 5.2:+10851007 | MS.gene010453:intron |
| TCATAATCATAGTCACCGTC+TGG | 0.518817 | 5.2:-10851269 | None:intergenic |
| GATTGGGGAAGGGAAGAAAG+TGG | 0.520028 | 5.2:+10843944 | MS.gene010453:CDS |
| GCTTCATCACTCGAGACAAA+AGG | 0.522287 | 5.2:-10848204 | None:intergenic |
| CACATTCCTGAAACTAAAGA+TGG | 0.523231 | 5.2:+10845085 | MS.gene010453:CDS |
| TGATGGAGAGATAGATATTG+GGG | 0.523914 | 5.2:+10851343 | MS.gene010453:CDS |
| GATGGTGATGATGAGGTTGA+TGG | 0.524517 | 5.2:+10851182 | MS.gene010453:CDS |
| GAGGATGATGATGACTTGAT+TGG | 0.530506 | 5.2:+10851311 | MS.gene010453:CDS |
| TCAGATTGAACCTGTCAAGC+AGG | 0.533611 | 5.2:+10850490 | MS.gene010453:CDS |
| TTGGATGTATTCATGGCAGC+TGG | 0.534133 | 5.2:-10848474 | None:intergenic |
| TAAGAGAGCTGATAGAAGCC+TGG | 0.534189 | 5.2:-10847982 | None:intergenic |
| CTTCAAAGCCTGACAAGGCA+TGG | 0.535279 | 5.2:-10844384 | None:intergenic |
| GTTTCCGTTGTAGACAATGT+TGG | 0.535987 | 5.2:-10850384 | None:intergenic |
| AAGTGATAATGAAGAGATTG+AGG | 0.536700 | 5.2:+10851214 | MS.gene010453:CDS |
| AAAAGAAAACGTAAAATTGG+TGG | 0.540487 | 5.2:+10851506 | MS.gene010453:CDS |
| TATTCTAAGAGCAATGAAAA+GGG | 0.541088 | 5.2:+10848616 | MS.gene010453:CDS |
| ACTACCAATTGGAAAAGTAC+TGG | 0.542174 | 5.2:-10848252 | None:intergenic |
| GGCTGTGGTTGTTAATGAGG+TGG | 0.544078 | 5.2:+10847016 | MS.gene010453:intron |
| TATTTGGGTGCTGAGACAAA+AGG | 0.545659 | 5.2:-10846624 | None:intergenic |
| ATGCAGATCGTGTAAGTTGG+TGG | 0.548231 | 5.2:+10850291 | MS.gene010453:CDS |
| ATGCTACTTCGGATTTGAGA+AGG | 0.548646 | 5.2:-10843563 | None:intergenic |
| ATAGTTCGGAAAGAAGGAAA+AGG | 0.550072 | 5.2:-10848811 | None:intergenic |
| AACAGTCGATAAAAGCGGTA+AGG | 0.550775 | 5.2:+10847902 | MS.gene010453:CDS |
| CCATATATGTTCTACTAAGT+AGG | 0.554035 | 5.2:+10845788 | MS.gene010453:CDS |
| ATCATCCTCTTCCATATCTG+AGG | 0.556175 | 5.2:-10851393 | None:intergenic |
| AAGGTAAGGTGATTGGGGAA+GGG | 0.556243 | 5.2:+10843934 | MS.gene010453:CDS |
| GCAGGCTGTGGTTGTTAATG+AGG | 0.559465 | 5.2:+10847013 | MS.gene010453:intron |
| TGATGCTGATGGTGATGATG+AGG | 0.561410 | 5.2:+10851175 | MS.gene010453:CDS |
| TCAGGATTATGAATCGACTA+GGG | 0.563004 | 5.2:+10844046 | MS.gene010453:CDS |
| GAAGAAATCGAACGATGAAG+AGG | 0.564010 | 5.2:+10851136 | MS.gene010453:CDS |
| TTGAACATCAATGATGTCAT+CGG | 0.564271 | 5.2:-10848226 | None:intergenic |
| TGTCGTGGATCATAGCCTCC+TGG | 0.567265 | 5.2:-10849338 | None:intergenic |
| GCTTGAAGGTAAGGTGATTG+GGG | 0.567630 | 5.2:+10843929 | MS.gene010453:CDS |
| CGTCTCACCAATAAAGGAGA+TGG | 0.570373 | 5.2:+10847676 | MS.gene010453:CDS |
| CTTGCCATGGTGGCAACTGA+AGG | 0.572750 | 5.2:-10850344 | None:intergenic |
| AAGAAGGAAAAGGCATGCAC+AGG | 0.573490 | 5.2:-10848801 | None:intergenic |
| CCAAAACAAACCACTTGGCA+TGG | 0.574328 | 5.2:+10850461 | MS.gene010453:CDS |
| AGAAGCAAAAGATGCTACTT+CGG | 0.575732 | 5.2:-10843574 | None:intergenic |
| GCAATGCAGATCGTGTAAGT+TGG | 0.578502 | 5.2:+10850288 | MS.gene010453:intron |
| CAAGCAAATTACCAATAAGA+GGG | 0.580467 | 5.2:-10849368 | None:intergenic |
| TCTGTTGCCTCAGATATGAA+CGG | 0.580468 | 5.2:+10845413 | MS.gene010453:intron |
| TGCAGATCGTGTAAGTTGGT+GGG | 0.584256 | 5.2:+10850292 | MS.gene010453:CDS |
| TTGATTGGTGATGTTAGTGA+TGG | 0.587595 | 5.2:+10851326 | MS.gene010453:CDS |
| TCTACTTCTCTGGTATTGGG+AGG | 0.588900 | 5.2:+10845117 | MS.gene010453:CDS |
| AAGTGCTTCAAAGCCTGACA+AGG | 0.591722 | 5.2:-10844389 | None:intergenic |
| TGTCCGCGTGGTCCTAAATG+AGG | 0.594661 | 5.2:-10847056 | None:intergenic |
| TTGCCATGGTGGCAACTGAA+GGG | 0.599154 | 5.2:-10850343 | None:intergenic |
| TATACCCTCAGATATGGAAG+AGG | 0.600500 | 5.2:+10851388 | MS.gene010453:CDS |
| AGCTGGTAGCATGTCTCGGG+AGG | 0.600878 | 5.2:-10845458 | None:intergenic |
| TCTAGGAATGGTGACATCCA+AGG | 0.600998 | 5.2:+10844351 | MS.gene010453:intron |
| AGGCATGCACAGGCATATTG+TGG | 0.601846 | 5.2:-10848791 | None:intergenic |
| AGCACGGTAAAATCGATCAC+TGG | 0.602678 | 5.2:-10848430 | None:intergenic |
| AGATGTTGATTTCTACTCAG+AGG | 0.603125 | 5.2:+10844087 | MS.gene010453:CDS |
| ACAGGTAGAATATCATCACT+TGG | 0.605013 | 5.2:-10849104 | None:intergenic |
| TGATTTGGAAGTAGCTAATG+AGG | 0.609378 | 5.2:+10851292 | MS.gene010453:CDS |
| CCAATACCAGAGAAGTAGAA+GGG | 0.611596 | 5.2:-10845113 | None:intergenic |
| ACCAGAGAAGTAGAAGGGAA+TGG | 0.613560 | 5.2:-10845108 | None:intergenic |
| CAACAGGATTATCACCAACC+AGG | 0.613659 | 5.2:-10844148 | None:intergenic |
| ACGTGAAGAATTTGGGCGAG+TGG | 0.614585 | 5.2:+10843967 | MS.gene010453:CDS |
| GATATTCTACCTGTTCAGAA+TGG | 0.615599 | 5.2:+10849113 | MS.gene010453:CDS |
| TAAGAGGGCTCTCTGTGTCG+TGG | 0.616011 | 5.2:-10849353 | None:intergenic |
| AAGAAGAGTTCTTGCCATGG+TGG | 0.620006 | 5.2:-10850354 | None:intergenic |
| GGTGATGATGAGGTTGATGG+TGG | 0.620161 | 5.2:+10851185 | MS.gene010453:CDS |
| AGCTGCCATGAATACATCCA+AGG | 0.622250 | 5.2:+10848476 | MS.gene010453:CDS |
| TCATCCTCTTCCATATCTGA+GGG | 0.623798 | 5.2:-10851392 | None:intergenic |
| TCACCGTCTGGTCCCAAAGT+GGG | 0.623980 | 5.2:-10851257 | None:intergenic |
| TGTTGCCCAATGACAAAACA+GGG | 0.624612 | 5.2:-10843803 | None:intergenic |
| GATGACAATGATCTTGACAT+AGG | 0.624826 | 5.2:+10851446 | MS.gene010453:CDS |
| ACACCCTTCAGTTGCCACCA+TGG | 0.625272 | 5.2:+10850340 | MS.gene010453:CDS |
| CTAGGAAAGCTGTTAAAGAG+AGG | 0.629774 | 5.2:-10850418 | None:intergenic |
| AAACAAACCACTTGGCATGG+TGG | 0.630983 | 5.2:+10850464 | MS.gene010453:CDS |
| GAGTTTGAACATATACTGGA+AGG | 0.631951 | 5.2:+10851563 | MS.gene010453:CDS |
| AATTGAAGACCCTGATACAG+CGG | 0.633823 | 5.2:+10845053 | MS.gene010453:CDS |
| GAGAAAGACCATATACTGGA+AGG | 0.634229 | 5.2:+10851629 | MS.gene010453:CDS |
| GAGAAAGACCATATACTGGA+AGG | 0.634229 | 5.2:+10851662 | MS.gene010453:CDS |
| TTGCCCAATGACAAAACAGG+GGG | 0.634576 | 5.2:-10843801 | None:intergenic |
| AAGGTTGGACAAGTGATAGT+CGG | 0.636604 | 5.2:-10846605 | None:intergenic |
| GATCCCACTTTGGGACCAGA+CGG | 0.640420 | 5.2:+10851254 | MS.gene010453:CDS |
| AATCAAACAGTCGATAAAAG+CGG | 0.643176 | 5.2:+10847897 | MS.gene010453:CDS |
| TGGGTGCTGAGACAAAAGGT+TGG | 0.644567 | 5.2:-10846620 | None:intergenic |
| GGTTCCAACATTGTCTACAA+CGG | 0.653797 | 5.2:+10850380 | MS.gene010453:CDS |
| TGAAGTAGATGTACCGCCAG+AGG | 0.657532 | 5.2:+10851055 | MS.gene010453:CDS |
| GTCACCGTCTGGTCCCAAAG+TGG | 0.658221 | 5.2:-10851258 | None:intergenic |
| GAATCTCTGGCCCAACCAAG+AGG | 0.658588 | 5.2:-10851022 | None:intergenic |
| ATCACTACTTACCATAAAGG+TGG | 0.659598 | 5.2:-10848845 | None:intergenic |
| CTGAGAACCACCATGCCAAG+TGG | 0.660533 | 5.2:-10850471 | None:intergenic |
| GGAGTTTGGAGTACAAAGCA+CGG | 0.662469 | 5.2:-10848446 | None:intergenic |
| TCATTTGTCATATAGGAACA+CGG | 0.665736 | 5.2:+10848989 | MS.gene010453:intron |
| AGAAAGAAGAGTTCTTGCCA+TGG | 0.667608 | 5.2:-10850357 | None:intergenic |
| AACTGATGAGAAACCTGTAG+CGG | 0.669244 | 5.2:+10849070 | MS.gene010453:CDS |
| GGAATGGTGACATCCAAGGT+CGG | 0.678165 | 5.2:+10844355 | MS.gene010453:intron |
| AAGAAGCATGTGTTGCCAGG+AGG | 0.687042 | 5.2:+10849323 | MS.gene010453:CDS |
| CAGGATTATGAATCGACTAG+GGG | 0.692459 | 5.2:+10844047 | MS.gene010453:CDS |
| ACAGCATGGTATTGTCCGCG+TGG | 0.703143 | 5.2:-10847068 | None:intergenic |
| CATGCACAGGCATATTGTGG+TGG | 0.703827 | 5.2:-10848788 | None:intergenic |
| AGAGTTCTCAGAATCGCATG+CGG | 0.710557 | 5.2:+10847950 | MS.gene010453:CDS |
| CAAACCCTTGACAAATACAG+AGG | 0.726150 | 5.2:+10843533 | MS.gene010453:CDS |
| TGGAAAACAAGATCCTCTGG+CGG | 0.727469 | 5.2:-10851068 | None:intergenic |
| GTTGCCCAATGACAAAACAG+GGG | 0.729546 | 5.2:-10843802 | None:intergenic |
| CGGCCTCATTTAGGACCACG+CGG | 0.757705 | 5.2:+10847053 | MS.gene010453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 10843510 | 10851790 | 10843510 | ID=MS.gene010453 |
| chr5.2 | mRNA | 10843510 | 10851790 | 10843510 | ID=MS.gene010453.t1;Parent=MS.gene010453 |
| chr5.2 | exon | 10843510 | 10844200 | 10843510 | ID=MS.gene010453.t1.exon1;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10843510 | 10844200 | 10843510 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10844356 | 10844431 | 10844356 | ID=MS.gene010453.t1.exon2;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10844356 | 10844431 | 10844356 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10845036 | 10845155 | 10845036 | ID=MS.gene010453.t1.exon3;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10845036 | 10845155 | 10845036 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10845426 | 10845501 | 10845426 | ID=MS.gene010453.t1.exon4;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10845426 | 10845501 | 10845426 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10845787 | 10845855 | 10845787 | ID=MS.gene010453.t1.exon5;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10845787 | 10845855 | 10845787 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10846571 | 10846651 | 10846571 | ID=MS.gene010453.t1.exon6;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10846571 | 10846651 | 10846571 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10847017 | 10847088 | 10847017 | ID=MS.gene010453.t1.exon7;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10847017 | 10847088 | 10847017 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10847655 | 10847747 | 10847655 | ID=MS.gene010453.t1.exon8;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10847655 | 10847747 | 10847655 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10847873 | 10848007 | 10847873 | ID=MS.gene010453.t1.exon9;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10847873 | 10848007 | 10847873 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10848186 | 10848269 | 10848186 | ID=MS.gene010453.t1.exon10;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10848186 | 10848269 | 10848186 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10848354 | 10848497 | 10848354 | ID=MS.gene010453.t1.exon11;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10848354 | 10848497 | 10848354 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10848596 | 10848685 | 10848596 | ID=MS.gene010453.t1.exon12;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10848596 | 10848685 | 10848596 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10848773 | 10848855 | 10848773 | ID=MS.gene010453.t1.exon13;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10848773 | 10848855 | 10848773 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10849004 | 10849378 | 10849004 | ID=MS.gene010453.t1.exon14;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10849004 | 10849378 | 10849004 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10850289 | 10850511 | 10850289 | ID=MS.gene010453.t1.exon15;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10850289 | 10850511 | 10850289 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| chr5.2 | exon | 10851008 | 10851790 | 10851008 | ID=MS.gene010453.t1.exon16;Parent=MS.gene010453.t1 |
| chr5.2 | CDS | 10851008 | 10851790 | 10851008 | ID=cds.MS.gene010453.t1;Parent=MS.gene010453.t1 |
| Gene Sequence |
| Protein sequence |
