Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70316.t1 | ACJ84110.1 | 99.1 | 234 | 2 | 0 | 1 | 234 | 1 | 234 | 5.90E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70316.t1 | Q9C9C5 | 81.5 | 232 | 43 | 0 | 3 | 234 | 2 | 233 | 3.2e-103 | 375.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70316.t1 | B7FH81 | 99.1 | 234 | 2 | 0 | 1 | 234 | 1 | 234 | 4.3e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene70316 | 0.840177 | 1.02E-57 | -1.69E-46 |
| MS.gene049387 | MS.gene70316 | 0.866369 | 3.00E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene70316 | 0.921757 | 2.37E-88 | -1.69E-46 |
| MS.gene050252 | MS.gene70316 | 0.811789 | 5.87E-51 | -1.69E-46 |
| MS.gene050791 | MS.gene70316 | 0.871209 | 8.14E-67 | -1.69E-46 |
| MS.gene050912 | MS.gene70316 | 0.832494 | 9.16E-56 | -1.69E-46 |
| MS.gene051925 | MS.gene70316 | 0.85771 | 1.36E-62 | -1.69E-46 |
| MS.gene051927 | MS.gene70316 | 0.819919 | 9.02E-53 | -1.69E-46 |
| MS.gene051984 | MS.gene70316 | 0.825348 | 4.92E-54 | -1.69E-46 |
| MS.gene052664 | MS.gene70316 | 0.852008 | 6.12E-61 | -1.69E-46 |
| MS.gene052666 | MS.gene70316 | 0.879737 | 9.76E-70 | -1.69E-46 |
| MS.gene053224 | MS.gene70316 | 0.885286 | 9.27E-72 | -1.69E-46 |
| MS.gene057272 | MS.gene70316 | 0.930434 | 1.65E-93 | -1.69E-46 |
| MS.gene057321 | MS.gene70316 | 0.83536 | 1.76E-56 | -1.69E-46 |
| MS.gene057641 | MS.gene70316 | 0.877668 | 5.23E-69 | -1.69E-46 |
| MS.gene057643 | MS.gene70316 | 0.912508 | 1.80E-83 | -1.69E-46 |
| MS.gene059340 | MS.gene70316 | 0.87699 | 8.99E-69 | -1.69E-46 |
| MS.gene060432 | MS.gene70316 | 0.811221 | 7.80E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene70316 | 0.877915 | 4.28E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70316 | MS.gene31056 | PPI |
| MS.gene013401 | MS.gene70316 | PPI |
| MS.gene31039 | MS.gene70316 | PPI |
| MS.gene42910 | MS.gene70316 | PPI |
| MS.gene06501 | MS.gene70316 | PPI |
| MS.gene049376 | MS.gene70316 | PPI |
| MS.gene70316 | MS.gene041557 | PPI |
| MS.gene06481 | MS.gene70316 | PPI |
| MS.gene70551 | MS.gene70316 | PPI |
| MS.gene045180 | MS.gene70316 | PPI |
| MS.gene81197 | MS.gene70316 | PPI |
| MS.gene023799 | MS.gene70316 | PPI |
| MS.gene035331 | MS.gene70316 | PPI |
| MS.gene42236 | MS.gene70316 | PPI |
| MS.gene73008 | MS.gene70316 | PPI |
| MS.gene27648 | MS.gene70316 | PPI |
| MS.gene28147 | MS.gene70316 | PPI |
| MS.gene70316 | MS.gene030719 | PPI |
| MS.gene047734 | MS.gene70316 | PPI |
| MS.gene70316 | MS.gene067072 | PPI |
| MS.gene70316 | MS.gene52173 | PPI |
| MS.gene010453 | MS.gene70316 | PPI |
| MS.gene75537 | MS.gene70316 | PPI |
| MS.gene036487 | MS.gene70316 | PPI |
| MS.gene59319 | MS.gene70316 | PPI |
| MS.gene58173 | MS.gene70316 | PPI |
| MS.gene042025 | MS.gene70316 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70316.t1 | MTR_5g098090 | 96.154 | 234 | 9 | 0 | 1 | 234 | 1 | 234 | 9.93e-163 | 449 |
| MS.gene70316.t1 | MTR_8g091910 | 92.735 | 234 | 2 | 1 | 1 | 234 | 1 | 219 | 3.56e-153 | 424 |
| MS.gene70316.t1 | MTR_3g094570 | 85.897 | 234 | 32 | 1 | 1 | 234 | 1 | 233 | 9.06e-145 | 404 |
| MS.gene70316.t1 | MTR_3g094860 | 85.897 | 234 | 32 | 1 | 1 | 234 | 1 | 233 | 2.25e-144 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70316.t1 | AT1G74050 | 81.466 | 232 | 43 | 0 | 3 | 234 | 2 | 233 | 2.00e-122 | 347 |
| MS.gene70316.t1 | AT1G74060 | 80.603 | 232 | 45 | 0 | 3 | 234 | 2 | 233 | 1.02e-120 | 343 |
| MS.gene70316.t1 | AT1G18540 | 78.879 | 232 | 49 | 0 | 3 | 234 | 2 | 233 | 7.51e-116 | 330 |
Find 57 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCCGGTAGATTTA+AGG | 0.142019 | 4.1:-9459781 | MS.gene70316:CDS |
| CCAATTCCTCTGATCAAATC+AGG | 0.248411 | 4.1:+9460352 | None:intergenic |
| TCATCAGCAGGGTAAAATTT+TGG | 0.250055 | 4.1:+9460208 | None:intergenic |
| TCTGGATTGCTTCTTGTAAC+TGG | 0.291952 | 4.1:-9459726 | MS.gene70316:intron |
| CCTGATTTGATCAGAGGAAT+TGG | 0.319315 | 4.1:-9460352 | MS.gene70316:CDS |
| TCAACAGCAGTTTCGGGCTT+AGG | 0.337911 | 4.1:+9460238 | None:intergenic |
| GCAGTTTCGGGCTTAGGTTT+AGG | 0.345228 | 4.1:+9460244 | None:intergenic |
| TCCTTTGAGACGTGTGAATC+AGG | 0.346287 | 4.1:-9459181 | MS.gene70316:CDS |
| GAAAGGTATCTGGGCTATTA+AGG | 0.349673 | 4.1:-9460299 | MS.gene70316:CDS |
| TGTATCACAAGAAAGGTATC+TGG | 0.350934 | 4.1:-9460309 | MS.gene70316:CDS |
| CTCTGATCAAATCAGGGTTT+CGG | 0.358025 | 4.1:+9460359 | None:intergenic |
| CTTCTTGCCGGTAGATTTAA+GGG | 0.364740 | 4.1:-9459780 | MS.gene70316:CDS |
| CCAGACTTGAAGACTTATCT+TGG | 0.410256 | 4.1:-9458850 | MS.gene70316:CDS |
| CCAAGATAAGTCTTCAAGTC+TGG | 0.428069 | 4.1:+9458850 | None:intergenic |
| TTGAAAAGTACTTGTCATCA+AGG | 0.430348 | 4.1:+9459103 | None:intergenic |
| ACAGTGCTGATTCTTCTTGC+CGG | 0.435264 | 4.1:-9459792 | MS.gene70316:CDS |
| CGAATTCTTTGAGTCAGATA+AGG | 0.457015 | 4.1:-9459046 | MS.gene70316:CDS |
| GGCTTCTTCACATCATCAGC+AGG | 0.465308 | 4.1:+9460196 | None:intergenic |
| TGAAGACTTATCTTGGTGCC+AGG | 0.466625 | 4.1:-9458843 | MS.gene70316:CDS |
| AAGAAGAATCAGCACTGTGC+CGG | 0.476099 | 4.1:+9459797 | None:intergenic |
| AACACCGGAGATATCGACTT+TGG | 0.477360 | 4.1:+9459137 | None:intergenic |
| ACCTGCCTTGAGAGAAAACC+TGG | 0.493075 | 4.1:+9458825 | None:intergenic |
| ATCAGGGTTTCGGCTAACCC+TGG | 0.499591 | 4.1:+9460369 | None:intergenic |
| TGGTCATCTTTCTTCTGCTG+AGG | 0.501451 | 4.1:+9458916 | None:intergenic |
| AGAAGAATCAGCACTGTGCC+GGG | 0.513749 | 4.1:+9459798 | None:intergenic |
| CAATTCCTCTGATCAAATCA+GGG | 0.517272 | 4.1:+9460353 | None:intergenic |
| AGGAACTCCGTTGATCTTGA+AGG | 0.517314 | 4.1:+9459200 | None:intergenic |
| CGATATCTCCGGTGTTAATG+TGG | 0.532682 | 4.1:-9459130 | MS.gene70316:CDS |
| GTGAATCAGGCCTATGTGAT+TGG | 0.535696 | 4.1:-9459168 | MS.gene70316:CDS |
| CTGGGTGCTCTCTGCTTCGT+CGG | 0.540977 | 4.1:+9460388 | None:intergenic |
| TCACAGATGTATCACAAGAA+AGG | 0.542107 | 4.1:-9460316 | MS.gene70316:CDS |
| TTCAGGGCAAGCATCACTCC+CGG | 0.546234 | 4.1:-9459816 | MS.gene70316:intron |
| CCTCTTGCCCTTAAATCTAC+CGG | 0.549567 | 4.1:+9459773 | None:intergenic |
| GTATCACAAGAAAGGTATCT+GGG | 0.554030 | 4.1:-9460308 | MS.gene70316:CDS |
| GGCTTATGCTTGTTGCGAAG+AGG | 0.566563 | 4.1:+9460175 | None:intergenic |
| AGCCTAAGCAGACTAAGCTC+AGG | 0.567914 | 4.1:-9460156 | MS.gene70316:intron |
| TCAGGGTTTCGGCTAACCCT+GGG | 0.568120 | 4.1:+9460370 | None:intergenic |
| CGAAACCCTGATTTGATCAG+AGG | 0.574541 | 4.1:-9460358 | MS.gene70316:CDS |
| CGGTAGATTTAAGGGCAAGA+GGG | 0.577532 | 4.1:-9459772 | MS.gene70316:CDS |
| GCCTGATTCACACGTCTCAA+AGG | 0.578175 | 4.1:+9459180 | None:intergenic |
| TCAACCAAAGTCGATATCTC+CGG | 0.580594 | 4.1:-9459141 | MS.gene70316:CDS |
| CCGGTAGATTTAAGGGCAAG+AGG | 0.581183 | 4.1:-9459773 | MS.gene70316:CDS |
| AACCTGAGCTTAGTCTGCTT+AGG | 0.583716 | 4.1:+9460154 | None:intergenic |
| GGAACTCCGTTGATCTTGAA+GGG | 0.585587 | 4.1:+9459201 | None:intergenic |
| GGTTGATGTACCAATCACAT+AGG | 0.591225 | 4.1:+9459158 | None:intergenic |
| GACGAAGCAGAGAGCACCCA+GGG | 0.611105 | 4.1:-9460386 | MS.gene70316:CDS |
| AACTAGAAGACGAGTTCGTG+TGG | 0.615065 | 4.1:+9458796 | None:intergenic |
| TCAGGTCCCTTCAAGATCAA+CGG | 0.616664 | 4.1:-9459207 | MS.gene70316:intron |
| ATTCTTTGAGTCAGATAAGG+AGG | 0.630746 | 4.1:-9459043 | MS.gene70316:intron |
| TAGATTTAAGGGCAAGAGGG+TGG | 0.640763 | 4.1:-9459769 | MS.gene70316:CDS |
| GTTACAAGAAGCAATCCAGA+AGG | 0.643198 | 4.1:+9459729 | None:intergenic |
| CGACGAAGCAGAGAGCACCC+AGG | 0.649766 | 4.1:-9460387 | MS.gene70316:CDS |
| GCTTCTTCACATCATCAGCA+GGG | 0.669182 | 4.1:+9460197 | None:intergenic |
| AAGGTTATCCACATTAACAC+CGG | 0.677708 | 4.1:+9459122 | None:intergenic |
| TTAGGTTTAGGATCATGACG+AGG | 0.681191 | 4.1:+9460256 | None:intergenic |
| TAGGTTTAGGATCATGACGA+GGG | 0.683516 | 4.1:+9460257 | None:intergenic |
| GAAAGATGACCAGAAAACAG+TGG | 0.686525 | 4.1:-9458905 | MS.gene70316:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCTGTTAAAAAAAAAAAAAA+AGG | + | chr4.1:9459916-9459935 | None:intergenic | 15.0% |
| !!! | ACATGATTTTGATATTATTT+GGG | - | chr4.1:9459248-9459267 | MS.gene70316:intron | 15.0% |
| !!! | CCTTTTTTTTTTTTTTTAAC+AGG | - | chr4.1:9459913-9459932 | MS.gene70316:intron | 15.0% |
| !!! | TACATGATTTTGATATTATT+TGG | - | chr4.1:9459247-9459266 | MS.gene70316:intron | 15.0% |
| !! | AAGATCAGAAATTTAATTGA+TGG | + | chr4.1:9459562-9459581 | None:intergenic | 20.0% |
| !! | AATATCAAAATCATGTACAA+AGG | + | chr4.1:9459244-9459263 | None:intergenic | 20.0% |
| !!! | CAGTTATTCTTATCATTTTA+CGG | - | chr4.1:9459085-9459104 | MS.gene70316:CDS | 20.0% |
| !!! | TCTTATTCTTTTTATGTACT+AGG | - | chr4.1:9459578-9459597 | MS.gene70316:intron | 20.0% |
| !!! | TGTTTTTTATTTTTGATTGC+AGG | - | chr4.1:9460239-9460258 | MS.gene70316:CDS | 20.0% |
| !!! | TTTTGATATTATTTGGGATA+TGG | - | chr4.1:9459254-9459273 | MS.gene70316:intron | 20.0% |
| ! | TCACCTAAAATAACAAATAC+TGG | + | chr4.1:9459219-9459238 | None:intergenic | 25.0% |
| !!! | AATCACTTTTGTTTTGTGTT+GGG | - | chr4.1:9459342-9459361 | MS.gene70316:intron | 25.0% |
| !!! | CAACCAGTATTTGTTATTTT+AGG | - | chr4.1:9459213-9459232 | MS.gene70316:intron | 25.0% |
| !!! | TAATCACTTTTGTTTTGTGT+TGG | - | chr4.1:9459341-9459360 | MS.gene70316:intron | 25.0% |
| ACAGTGTTCTTTGTGTTAAT+TGG | - | chr4.1:9459155-9459174 | MS.gene70316:CDS | 30.0% | |
| AGAAATGTTGACGAGATATA+AGG | - | chr4.1:9459612-9459631 | MS.gene70316:intron | 30.0% | |
| CAGTGTTCTTTGTGTTAATT+GGG | - | chr4.1:9459156-9459175 | MS.gene70316:CDS | 30.0% | |
| GAAATGTTGACGAGATATAA+GGG | - | chr4.1:9459613-9459632 | MS.gene70316:intron | 30.0% | |
| GATGTCAACATTGAATATCA+TGG | - | chr4.1:9459888-9459907 | MS.gene70316:intron | 30.0% | |
| TATTCAATGTTGACATCAGT+TGG | + | chr4.1:9459885-9459904 | None:intergenic | 30.0% | |
| TTTGTGTTAATTGGGATTAC+TGG | - | chr4.1:9459164-9459183 | MS.gene70316:CDS | 30.0% | |
| TTTGTTGCTCTTGATTGATA+AGG | - | chr4.1:9459508-9459527 | MS.gene70316:intron | 30.0% | |
| ! | TGATGACAAGTACTTTTCAA+AGG | - | chr4.1:9460092-9460111 | MS.gene70316:intron | 30.0% |
| ! | TTTTTCTTACTTTGCATCTC+AGG | - | chr4.1:9459967-9459986 | MS.gene70316:intron | 30.0% |
| !! | ACATAAGTTTTGTCACTGTT+TGG | + | chr4.1:9459791-9459810 | None:intergenic | 30.0% |
| !! | CATAAGTTTTGTCACTGTTT+GGG | + | chr4.1:9459790-9459809 | None:intergenic | 30.0% |
| !! | TTGAAAAGTACTTGTCATCA+AGG | + | chr4.1:9460092-9460111 | None:intergenic | 30.0% |
| !! | TTTTTGATTGCAGGAGAAAA+AGG | - | chr4.1:9460248-9460267 | MS.gene70316:CDS | 30.0% |
| AAGGTTATCCACATTAACAC+CGG | + | chr4.1:9460073-9460092 | None:intergenic | 35.0% | |
| ATTCTTTGAGTCAGATAAGG+AGG | - | chr4.1:9460149-9460168 | MS.gene70316:intron | 35.0% | |
| CAATTCCTCTGATCAAATCA+GGG | + | chr4.1:9458842-9458861 | None:intergenic | 35.0% | |
| CGAATTCTTTGAGTCAGATA+AGG | - | chr4.1:9460146-9460165 | MS.gene70316:intron | 35.0% | |
| TCACAGATGTATCACAAGAA+AGG | - | chr4.1:9458876-9458895 | MS.gene70316:CDS | 35.0% | |
| ! | TCATCAGCAGGGTAAAATTT+TGG | + | chr4.1:9458987-9459006 | None:intergenic | 35.0% |
| !! | GTATCACAAGAAAGGTATCT+GGG | - | chr4.1:9458884-9458903 | MS.gene70316:CDS | 35.0% |
| !! | TGGTTTTTCAACAGCAGTTT+CGG | + | chr4.1:9458964-9458983 | None:intergenic | 35.0% |
| !! | TGTATCACAAGAAAGGTATC+TGG | - | chr4.1:9458883-9458902 | MS.gene70316:CDS | 35.0% |
| !!! | TTGGGTCTTTTTTGTCTTCA+GGG | - | chr4.1:9459360-9459379 | MS.gene70316:intron | 35.0% |
| AAAAAGAAGAGCAAGGGAGA+AGG | - | chr4.1:9460123-9460142 | MS.gene70316:intron | 40.0% | |
| CCAAGATAAGTCTTCAAGTC+TGG | + | chr4.1:9460345-9460364 | None:intergenic | 40.0% | |
| CCAATTCCTCTGATCAAATC+AGG | + | chr4.1:9458843-9458862 | None:intergenic | 40.0% | |
| CCAGACTTGAAGACTTATCT+TGG | - | chr4.1:9460342-9460361 | MS.gene70316:CDS | 40.0% | |
| CTCTGATCAAATCAGGGTTT+CGG | + | chr4.1:9458836-9458855 | None:intergenic | 40.0% | |
| CTTCTTGCCGGTAGATTTAA+GGG | - | chr4.1:9459412-9459431 | MS.gene70316:intron | 40.0% | |
| GAAAGATGACCAGAAAACAG+TGG | - | chr4.1:9460287-9460306 | MS.gene70316:CDS | 40.0% | |
| GCTATTAAGGCCAAAAATGG+TGG | - | chr4.1:9458906-9458925 | MS.gene70316:CDS | 40.0% | |
| GTTACAAGAAGCAATCCAGA+AGG | + | chr4.1:9459466-9459485 | None:intergenic | 40.0% | |
| GTTATGCTCATTGCTTCTGT+TGG | - | chr4.1:9460210-9460229 | MS.gene70316:CDS | 40.0% | |
| TCAACCAAAGTCGATATCTC+CGG | - | chr4.1:9460051-9460070 | MS.gene70316:intron | 40.0% | |
| TCTGGATTGCTTCTTGTAAC+TGG | - | chr4.1:9459466-9459485 | MS.gene70316:intron | 40.0% | |
| TCTTCTTGCCGGTAGATTTA+AGG | - | chr4.1:9459411-9459430 | MS.gene70316:intron | 40.0% | |
| TGGGCTATTAAGGCCAAAAA+TGG | - | chr4.1:9458903-9458922 | MS.gene70316:CDS | 40.0% | |
| ! | CCTGATTTGATCAGAGGAAT+TGG | - | chr4.1:9458840-9458859 | MS.gene70316:CDS | 40.0% |
| ! | GGTTGATGTACCAATCACAT+AGG | + | chr4.1:9460037-9460056 | None:intergenic | 40.0% |
| ! | TAGGTTTAGGATCATGACGA+GGG | + | chr4.1:9458938-9458957 | None:intergenic | 40.0% |
| ! | TCAGCAGGGTAAAATTTTGG+TGG | + | chr4.1:9458984-9459003 | None:intergenic | 40.0% |
| ! | TTAGGTTTAGGATCATGACG+AGG | + | chr4.1:9458939-9458958 | None:intergenic | 40.0% |
| !! | GAAAGGTATCTGGGCTATTA+AGG | - | chr4.1:9458893-9458912 | MS.gene70316:CDS | 40.0% |
| !! | GGTTTTTCAACAGCAGTTTC+GGG | + | chr4.1:9458963-9458982 | None:intergenic | 40.0% |
| !!! | CTCCCTTGCTCTTCTTTTTT+GGG | + | chr4.1:9460122-9460141 | None:intergenic | 40.0% |
| !!! | GTTGGGTCTTTTTTGTCTTC+AGG | - | chr4.1:9459359-9459378 | MS.gene70316:intron | 40.0% |
| !!! | TCCCTTGCTCTTCTTTTTTG+GGG | + | chr4.1:9460121-9460140 | None:intergenic | 40.0% |
| !!! | TCTCCCTTGCTCTTCTTTTT+TGG | + | chr4.1:9460123-9460142 | None:intergenic | 40.0% |
| !!! | TTTTTGAAGCAGCTTCCTTC+TGG | - | chr4.1:9459448-9459467 | MS.gene70316:intron | 40.0% |
| AACCTGAGCTTAGTCTGCTT+AGG | + | chr4.1:9459041-9459060 | None:intergenic | 45.0% | |
| AAGAAGAATCAGCACTGTGC+CGG | + | chr4.1:9459398-9459417 | None:intergenic | 45.0% | |
| AGCCCCAAAAAAGAAGAGCA+AGG | - | chr4.1:9460116-9460135 | MS.gene70316:intron | 45.0% | |
| AGGAACTCCGTTGATCTTGA+AGG | + | chr4.1:9459995-9460014 | None:intergenic | 45.0% | |
| CCTCTTGCCCTTAAATCTAC+CGG | + | chr4.1:9459422-9459441 | None:intergenic | 45.0% | |
| CGGTAGATTTAAGGGCAAGA+GGG | - | chr4.1:9459420-9459439 | MS.gene70316:intron | 45.0% | |
| GCCCCAAAAAAGAAGAGCAA+GGG | - | chr4.1:9460117-9460136 | MS.gene70316:intron | 45.0% | |
| GCTTCTTCACATCATCAGCA+GGG | + | chr4.1:9458998-9459017 | None:intergenic | 45.0% | |
| GGAACTCCGTTGATCTTGAA+GGG | + | chr4.1:9459994-9460013 | None:intergenic | 45.0% | |
| GTGAATCAGGCCTATGTGAT+TGG | - | chr4.1:9460024-9460043 | MS.gene70316:intron | 45.0% | |
| TAGATTTAAGGGCAAGAGGG+TGG | - | chr4.1:9459423-9459442 | MS.gene70316:intron | 45.0% | |
| TCAGGTCCCTTCAAGATCAA+CGG | - | chr4.1:9459985-9460004 | MS.gene70316:intron | 45.0% | |
| TGAAGAGAAGCCAAGACAAG+TGG | + | chr4.1:9459941-9459960 | None:intergenic | 45.0% | |
| TGGTCATCTTTCTTCTGCTG+AGG | + | chr4.1:9460279-9460298 | None:intergenic | 45.0% | |
| TTAACAGGCACCACTTGTCT+TGG | - | chr4.1:9459928-9459947 | MS.gene70316:intron | 45.0% | |
| ! | AGGGAAAACGCCACCATTTT+TGG | + | chr4.1:9458919-9458938 | None:intergenic | 45.0% |
| ! | CGAAACCCTGATTTGATCAG+AGG | - | chr4.1:9458834-9458853 | MS.gene70316:CDS | 45.0% |
| ! | CGATATCTCCGGTGTTAATG+TGG | - | chr4.1:9460062-9460081 | MS.gene70316:intron | 45.0% |
| !! | AACACCGGAGATATCGACTT+TGG | + | chr4.1:9460058-9460077 | None:intergenic | 45.0% |
| !! | ACAGTGCTGATTCTTCTTGC+CGG | - | chr4.1:9459400-9459419 | MS.gene70316:intron | 45.0% |
| !! | TCCTTTGAGACGTGTGAATC+AGG | - | chr4.1:9460011-9460030 | MS.gene70316:intron | 45.0% |
| !! | TGAAGACTTATCTTGGTGCC+AGG | - | chr4.1:9460349-9460368 | MS.gene70316:CDS | 45.0% |
| ACCTGCCTTGAGAGAAAACC+TGG | + | chr4.1:9460370-9460389 | None:intergenic | 50.0% | |
| AGAAGAATCAGCACTGTGCC+GGG | + | chr4.1:9459397-9459416 | None:intergenic | 50.0% | |
| AGCCTAAGCAGACTAAGCTC+AGG | - | chr4.1:9459036-9459055 | MS.gene70316:intron | 50.0% | |
| CCGGTAGATTTAAGGGCAAG+AGG | - | chr4.1:9459419-9459438 | MS.gene70316:intron | 50.0% | |
| GCAGTTTCGGGCTTAGGTTT+AGG | + | chr4.1:9458951-9458970 | None:intergenic | 50.0% | |
| GCCTGATTCACACGTCTCAA+AGG | + | chr4.1:9460015-9460034 | None:intergenic | 50.0% | |
| GGCTTCTTCACATCATCAGC+AGG | + | chr4.1:9458999-9459018 | None:intergenic | 50.0% | |
| TCAACAGCAGTTTCGGGCTT+AGG | + | chr4.1:9458957-9458976 | None:intergenic | 50.0% | |
| ! | ATGCAGCGTCCACTGTTTTC+TGG | + | chr4.1:9460299-9460318 | None:intergenic | 50.0% |
| ! | GGCTTATGCTTGTTGCGAAG+AGG | + | chr4.1:9459020-9459039 | None:intergenic | 50.0% |
| !! | TGGTGCCAGGTTTTCTCTCA+AGG | - | chr4.1:9460362-9460381 | MS.gene70316:CDS | 50.0% |
| ATCAGGGTTTCGGCTAACCC+TGG | + | chr4.1:9458826-9458845 | None:intergenic | 55.0% | |
| TCAGGGTTTCGGCTAACCCT+GGG | + | chr4.1:9458825-9458844 | None:intergenic | 55.0% | |
| TTCAGGGCAAGCATCACTCC+CGG | - | chr4.1:9459376-9459395 | MS.gene70316:intron | 55.0% | |
| ! | GCCAGGTTTTCTCTCAAGGC+AGG | - | chr4.1:9460366-9460385 | MS.gene70316:CDS | 55.0% |
| CTGGGTGCTCTCTGCTTCGT+CGG | + | chr4.1:9458807-9458826 | None:intergenic | 60.0% | |
| !! | GACGAAGCAGAGAGCACCCA+GGG | - | chr4.1:9458806-9458825 | MS.gene70316:CDS | 60.0% |
| !! | CGACGAAGCAGAGAGCACCC+AGG | - | chr4.1:9458805-9458824 | MS.gene70316:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 9458798 | 9460416 | 9458798 | ID=MS.gene70316 |
| chr4.1 | mRNA | 9458798 | 9460416 | 9458798 | ID=MS.gene70316.t1;Parent=MS.gene70316 |
| chr4.1 | exon | 9460157 | 9460416 | 9460157 | ID=MS.gene70316.t1.exon1;Parent=MS.gene70316.t1 |
| chr4.1 | CDS | 9460157 | 9460416 | 9460157 | ID=cds.MS.gene70316.t1;Parent=MS.gene70316.t1 |
| chr4.1 | exon | 9459727 | 9459833 | 9459727 | ID=MS.gene70316.t1.exon2;Parent=MS.gene70316.t1 |
| chr4.1 | CDS | 9459727 | 9459833 | 9459727 | ID=cds.MS.gene70316.t1;Parent=MS.gene70316.t1 |
| chr4.1 | exon | 9459044 | 9459225 | 9459044 | ID=MS.gene70316.t1.exon3;Parent=MS.gene70316.t1 |
| chr4.1 | CDS | 9459044 | 9459225 | 9459044 | ID=cds.MS.gene70316.t1;Parent=MS.gene70316.t1 |
| chr4.1 | exon | 9458798 | 9458953 | 9458798 | ID=MS.gene70316.t1.exon4;Parent=MS.gene70316.t1 |
| chr4.1 | CDS | 9458798 | 9458953 | 9458798 | ID=cds.MS.gene70316.t1;Parent=MS.gene70316.t1 |
| Gene Sequence |
| Protein sequence |
