Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31039.t1 | XP_003602484.1 | 98.3 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 2.10E-122 | 448.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31039.t1 | Q9C9C6 | 79.8 | 233 | 47 | 0 | 1 | 233 | 1 | 233 | 5.6e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31039.t1 | B7FH28 | 98.3 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 1.5e-122 | 448.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene31039 | 0.868396 | 6.74E-66 | -1.69E-46 |
| MS.gene050134 | MS.gene31039 | 0.829556 | 4.82E-55 | -1.69E-46 |
| MS.gene050252 | MS.gene31039 | 0.84289 | 1.96E-58 | -1.69E-46 |
| MS.gene050791 | MS.gene31039 | 0.848425 | 6.18E-60 | -1.69E-46 |
| MS.gene051963 | MS.gene31039 | 0.827231 | 1.75E-54 | -1.69E-46 |
| MS.gene051984 | MS.gene31039 | 0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene052664 | MS.gene31039 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene31039 | 0.815272 | 1.01E-51 | -1.69E-46 |
| MS.gene054624 | MS.gene31039 | 0.803901 | 2.79E-49 | -1.69E-46 |
| MS.gene057272 | MS.gene31039 | 0.853354 | 2.53E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene31039 | 0.809039 | 2.30E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene31039 | 0.800706 | 1.27E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81197 | MS.gene31039 | PPI |
| MS.gene023799 | MS.gene31039 | PPI |
| MS.gene31039 | MS.gene041557 | PPI |
| MS.gene73008 | MS.gene31039 | PPI |
| MS.gene27648 | MS.gene31039 | PPI |
| MS.gene28147 | MS.gene31039 | PPI |
| MS.gene31039 | MS.gene70316 | PPI |
| MS.gene047734 | MS.gene31039 | PPI |
| MS.gene31039 | MS.gene035331 | PPI |
| MS.gene010453 | MS.gene31039 | PPI |
| MS.gene31039 | MS.gene42910 | PPI |
| MS.gene013401 | MS.gene31039 | PPI |
| MS.gene31039 | MS.gene030719 | PPI |
| MS.gene75537 | MS.gene31039 | PPI |
| MS.gene036487 | MS.gene31039 | PPI |
| MS.gene59319 | MS.gene31039 | PPI |
| MS.gene31039 | MS.gene52173 | PPI |
| MS.gene58173 | MS.gene31039 | PPI |
| MS.gene042025 | MS.gene31039 | PPI |
| MS.gene31039 | MS.gene067072 | PPI |
| MS.gene06501 | MS.gene31039 | PPI |
| MS.gene31039 | MS.gene31056 | PPI |
| MS.gene42236 | MS.gene31039 | PPI |
| MS.gene049376 | MS.gene31039 | PPI |
| MS.gene06481 | MS.gene31039 | PPI |
| MS.gene70551 | MS.gene31039 | PPI |
| MS.gene045180 | MS.gene31039 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31039.t1 | MTR_3g094570 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 5.34e-167 | 460 |
| MS.gene31039.t1 | MTR_3g094860 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 1.15e-166 | 459 |
| MS.gene31039.t1 | MTR_5g098090 | 85.043 | 234 | 34 | 1 | 1 | 233 | 1 | 234 | 9.53e-142 | 396 |
| MS.gene31039.t1 | MTR_8g091910 | 81.624 | 234 | 27 | 2 | 1 | 233 | 1 | 219 | 1.58e-132 | 372 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31039.t1 | AT1G74060 | 79.828 | 233 | 47 | 0 | 1 | 233 | 1 | 233 | 6.14e-121 | 343 |
| MS.gene31039.t1 | AT1G74050 | 79.828 | 233 | 47 | 0 | 1 | 233 | 1 | 233 | 1.26e-120 | 343 |
| MS.gene31039.t1 | AT1G18540 | 78.112 | 233 | 51 | 0 | 1 | 233 | 1 | 233 | 8.19e-114 | 325 |
Find 68 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCTGGAAGATTTA+AGG | 0.132093 | 3.3:+78743509 | MS.gene31039:CDS |
| TTTCTCAAACAGCTTCCTTC+TGG | 0.232559 | 3.3:+78743546 | MS.gene31039:CDS |
| GGCTTCTCGGCCGGAGCTGC+AGG | 0.250032 | 3.3:-78742658 | None:intergenic |
| TTAGGTCCATTCAAGATTAA+TGG | 0.250233 | 3.3:+78745199 | MS.gene31039:intron |
| AACCTGAGCTTAGTGGGTTT+TGG | 0.276883 | 3.3:-78742736 | None:intergenic |
| CTTCTTGCTGGAAGATTTAA+GGG | 0.311988 | 3.3:+78743510 | MS.gene31039:CDS |
| TCTGGACTTCTTCTTGTTAC+CGG | 0.344596 | 3.3:+78743564 | MS.gene31039:CDS |
| GGCTTCTTCACGTCGTCGGC+GGG | 0.353564 | 3.3:-78742694 | None:intergenic |
| TGGCTTCACACCTGCCTTCA+AGG | 0.355239 | 3.3:-78745576 | None:intergenic |
| CCCCTTGAGACGTGTGAATC+AGG | 0.357560 | 3.3:+78745225 | MS.gene31039:CDS |
| TGTATCACAAACGTGGTCTC+TGG | 0.360563 | 3.3:+78742581 | MS.gene31039:CDS |
| CGAGTTCTTTGAGGCAGATA+AGG | 0.375748 | 3.3:+78745360 | MS.gene31039:CDS |
| CAAGTCTGGAACACTGTCAA+TGG | 0.377541 | 3.3:-78745528 | None:intergenic |
| ACAGTGTTGATTCTTCTTGC+TGG | 0.383364 | 3.3:+78743498 | MS.gene31039:CDS |
| CCGATACCCCTGATCAAGTC+AGG | 0.389802 | 3.3:-78742538 | None:intergenic |
| GCCGTAACCCTGACTTGATC+AGG | 0.402373 | 3.3:+78742530 | MS.gene31039:CDS |
| TTCAGGGCTTCTATTACTCC+AGG | 0.405045 | 3.3:+78743474 | MS.gene31039:intron |
| GTGAATCAGGCTTATGTTAT+CGG | 0.407883 | 3.3:+78745238 | MS.gene31039:CDS |
| AACCGAAGAAATATCTACTT+TGG | 0.446745 | 3.3:-78745269 | None:intergenic |
| TACCAAAGTAGATATTTCTT+CGG | 0.451633 | 3.3:+78745267 | MS.gene31039:CDS |
| AGAAGAATCAACACTGTCCC+TGG | 0.473766 | 3.3:-78743492 | None:intergenic |
| GATCATCTTTCTTCTCCTGA+GGG | 0.477455 | 3.3:-78745475 | None:intergenic |
| AACTTAGGCGGCTTCTCGGC+CGG | 0.480002 | 3.3:-78742667 | None:intergenic |
| CGTCGCTAAGCCTGCAGCTC+CGG | 0.482998 | 3.3:+78742648 | MS.gene31039:CDS |
| CCTGACTTGATCAGGGGTAT+CGG | 0.491288 | 3.3:+78742538 | MS.gene31039:CDS |
| GGGACTCCATTAATCTTGAA+TGG | 0.491418 | 3.3:-78745205 | None:intergenic |
| TGATCATCTTTCTTCTCCTG+AGG | 0.494574 | 3.3:-78745476 | None:intergenic |
| TGAAAACTTACCTAGGTGCC+AGG | 0.495019 | 3.3:+78745549 | MS.gene31039:CDS |
| GTAAAACTTAGGCGGCTTCT+CGG | 0.498660 | 3.3:-78742671 | None:intergenic |
| CACATGAGTTGGTCTTCTAA+AGG | 0.499867 | 3.3:+78745597 | MS.gene31039:CDS |
| GGGAGAGAGCGAGTTCTTTG+AGG | 0.505471 | 3.3:+78745351 | MS.gene31039:CDS |
| ACGTGGTCTCTGGGCAATCA+AGG | 0.510085 | 3.3:+78742591 | MS.gene31039:CDS |
| ACCTGCCTTCAAGGAAAACC+TGG | 0.516282 | 3.3:-78745567 | None:intergenic |
| GGTGACGAACCTGAGCTTAG+TGG | 0.517641 | 3.3:-78742743 | None:intergenic |
| TGGCTTCTTCACGTCGTCGG+CGG | 0.523746 | 3.3:-78742695 | None:intergenic |
| CCCTGATCAAGTCAGGGTTA+CGG | 0.525127 | 3.3:-78742531 | None:intergenic |
| CGGAGCTGCAGGCTTAGCGA+CGG | 0.526524 | 3.3:-78742647 | None:intergenic |
| GTATCACAAACGTGGTCTCT+GGG | 0.530303 | 3.3:+78742582 | MS.gene31039:CDS |
| AGCCTGATTCACACGTCTCA+AGG | 0.531824 | 3.3:-78745227 | None:intergenic |
| GATCAAAAGACTGTCGATGC+TGG | 0.534143 | 3.3:+78745494 | MS.gene31039:CDS |
| GGAGCTGCAGGCTTAGCGAC+GGG | 0.545817 | 3.3:-78742646 | None:intergenic |
| GTGACGAACCTGAGCTTAGT+GGG | 0.562791 | 3.3:-78742742 | None:intergenic |
| GCCTGATTCACACGTCTCAA+GGG | 0.568583 | 3.3:-78745226 | None:intergenic |
| CAGGCTTAGCGACGGGATCG+TGG | 0.569427 | 3.3:-78742639 | None:intergenic |
| CCGTAACCCTGACTTGATCA+GGG | 0.572652 | 3.3:+78742531 | MS.gene31039:CDS |
| TGATGACAAGTATTTCTCAA+AGG | 0.576844 | 3.3:+78745306 | MS.gene31039:CDS |
| TAGCGACGGGATCGTGGCGA+GGG | 0.582049 | 3.3:-78742633 | None:intergenic |
| AGCCAAAACCCACTAAGCTC+AGG | 0.582122 | 3.3:+78742734 | MS.gene31039:CDS |
| GAGTGGCTTCTTCACGTCGT+CGG | 0.583036 | 3.3:-78742698 | None:intergenic |
| TCAAGGAAAACCTGGCACCT+AGG | 0.589414 | 3.3:-78745559 | None:intergenic |
| GGCTTGTGCTTGTTGCGGAG+TGG | 0.594085 | 3.3:-78742715 | None:intergenic |
| TTAGCGACGGGATCGTGGCG+AGG | 0.595917 | 3.3:-78742634 | None:intergenic |
| CCAGACTTGAAAACTTACCT+AGG | 0.601511 | 3.3:+78745542 | MS.gene31039:CDS |
| CGATACCCCTGATCAAGTCA+GGG | 0.606077 | 3.3:-78742537 | None:intergenic |
| CTTTAGAAGACCAACTCATG+TGG | 0.608084 | 3.3:-78745596 | None:intergenic |
| AGGTGTGAAGCCACATGAGT+TGG | 0.608147 | 3.3:+78745586 | MS.gene31039:CDS |
| GTTCTTTGAGGCAGATAAGG+AGG | 0.609313 | 3.3:+78745363 | MS.gene31039:CDS |
| GTAACAAGAAGAAGTCCAGA+AGG | 0.620622 | 3.3:-78743561 | None:intergenic |
| TCAGGGCTTCTATTACTCCA+GGG | 0.623428 | 3.3:+78743475 | MS.gene31039:intron |
| GCTTCTTCACGTCGTCGGCG+GGG | 0.624269 | 3.3:-78742693 | None:intergenic |
| AGGGTTACGGCTCACTCTTG+CGG | 0.626952 | 3.3:-78742518 | None:intergenic |
| TCGTCGGCGGGGTAAAACTT+AGG | 0.627965 | 3.3:-78742682 | None:intergenic |
| CCTGATTCACACGTCTCAAG+GGG | 0.635856 | 3.3:-78745225 | None:intergenic |
| TGGGCAATCAAGGCTAAGCA+CGG | 0.658739 | 3.3:+78742601 | MS.gene31039:CDS |
| TCGGCGGGGTAAAACTTAGG+CGG | 0.660381 | 3.3:-78742679 | None:intergenic |
| CGTAACCCTGACTTGATCAG+GGG | 0.675659 | 3.3:+78742532 | MS.gene31039:CDS |
| GCAATCAAGGCTAAGCACGG+TGG | 0.725321 | 3.3:+78742604 | MS.gene31039:CDS |
| TCTGCTATGTATCACAAACG+TGG | 0.741302 | 3.3:+78742574 | MS.gene31039:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTCATATAAAATAATT+TGG | + | chr3.3:78743670-78743689 | MS.gene31039:intron | 10.0% |
| !! | TTAATATTTATAATTACAGA+TGG | + | chr3.3:78743114-78743133 | MS.gene31039:intron | 10.0% |
| !! | AAAAAATCAATGATTTAACT+TGG | + | chr3.3:78744777-78744796 | MS.gene31039:intron | 15.0% |
| !! | AAAGATATTATTAAGTGTAT+TGG | - | chr3.3:78745010-78745029 | None:intergenic | 15.0% |
| !! | ACAATTGTATATCTAATTAA+TGG | - | chr3.3:78743044-78743063 | None:intergenic | 15.0% |
| !! | ATGTAAAGACTAAAAATATA+AGG | + | chr3.3:78744042-78744061 | MS.gene31039:intron | 15.0% |
| !! | ATTAAAATTAAGAATCAAGT+TGG | - | chr3.3:78744580-78744599 | None:intergenic | 15.0% |
| !! | ATTGATATGTTAAGATTAAA+AGG | + | chr3.3:78744288-78744307 | MS.gene31039:intron | 15.0% |
| !! | CTCAAAATTAGAATAAAAAA+GGG | - | chr3.3:78743315-78743334 | None:intergenic | 15.0% |
| !! | TATTTATTTATAGTTTCAAG+TGG | - | chr3.3:78744254-78744273 | None:intergenic | 15.0% |
| !! | TCTCAAAATTAGAATAAAAA+AGG | - | chr3.3:78743316-78743335 | None:intergenic | 15.0% |
| !! | TGTATTTGGTAAATATTATT+TGG | + | chr3.3:78743753-78743772 | MS.gene31039:intron | 15.0% |
| !! | TTAAAATTAAGAATCAAGTT+GGG | - | chr3.3:78744579-78744598 | None:intergenic | 15.0% |
| !! | TTTCTTAAAACAATAATTAC+CGG | - | chr3.3:78743586-78743605 | None:intergenic | 15.0% |
| !!! | AAATAGAAAATCTAGAATTA+TGG | - | chr3.3:78744112-78744131 | None:intergenic | 15.0% |
| !!! | AAATTTTATATGATATCTTC+AGG | + | chr3.3:78742858-78742877 | MS.gene31039:intron | 15.0% |
| !!! | AATTTTTAGAAATATTAGGA+TGG | - | chr3.3:78744507-78744526 | None:intergenic | 15.0% |
| !!! | ACTAATTTTTTAATTCTTTG+GGG | + | chr3.3:78744207-78744226 | MS.gene31039:intron | 15.0% |
| !!! | ATAATTCTAGATTTTCTATT+TGG | + | chr3.3:78744111-78744130 | MS.gene31039:intron | 15.0% |
| !!! | ATATACATTTTTTGTTTAGT+AGG | + | chr3.3:78744442-78744461 | MS.gene31039:intron | 15.0% |
| !!! | CATGAATTTTTAGAAATATT+AGG | - | chr3.3:78744511-78744530 | None:intergenic | 15.0% |
| !!! | GACTAATTTTTTAATTCTTT+GGG | + | chr3.3:78744206-78744225 | MS.gene31039:intron | 15.0% |
| !! | AATATAAGGTAGTACATTTA+TGG | + | chr3.3:78744056-78744075 | MS.gene31039:intron | 20.0% |
| !! | AATATAGAAACTGTTGATAT+TGG | + | chr3.3:78743241-78743260 | MS.gene31039:intron | 20.0% |
| !! | ATAAATCATTCAATTTGACA+AGG | - | chr3.3:78743436-78743455 | None:intergenic | 20.0% |
| !! | GTCAAATTGAATGATTTATT+TGG | + | chr3.3:78743437-78743456 | MS.gene31039:intron | 20.0% |
| !! | TAATCTTAACATATCAATCA+AGG | - | chr3.3:78744286-78744305 | None:intergenic | 20.0% |
| !! | TATGCTCTATTTATTTCAAT+GGG | + | chr3.3:78744906-78744925 | MS.gene31039:intron | 20.0% |
| !! | TTATGCTCTATTTATTTCAA+TGG | + | chr3.3:78744905-78744924 | MS.gene31039:intron | 20.0% |
| !!! | ATAATTCTAGTTGTTTTATC+TGG | + | chr3.3:78745070-78745089 | MS.gene31039:intron | 20.0% |
| !!! | ATACTTGTTTGTTGTATTAT+GGG | + | chr3.3:78743646-78743665 | MS.gene31039:intron | 20.0% |
| !!! | ATTTCTAAAAATTCATGTAG+AGG | + | chr3.3:78744514-78744533 | MS.gene31039:intron | 20.0% |
| !!! | GGACTAATTTTTTAATTCTT+TGG | + | chr3.3:78744205-78744224 | MS.gene31039:intron | 20.0% |
| !!! | TAAAATTAAGAATCAAGTTG+GGG | - | chr3.3:78744578-78744597 | None:intergenic | 20.0% |
| !!! | TAAACCTACTTTTTTTATCT+GGG | + | chr3.3:78744835-78744854 | MS.gene31039:intron | 20.0% |
| !!! | TAATTCTAGTTGTTTTATCT+GGG | + | chr3.3:78745071-78745090 | MS.gene31039:intron | 20.0% |
| !!! | TATACTTGTTTGTTGTATTA+TGG | + | chr3.3:78743645-78743664 | MS.gene31039:intron | 20.0% |
| !!! | TGCTTATTTAAAGTTTGTTT+TGG | + | chr3.3:78743727-78743746 | MS.gene31039:intron | 20.0% |
| !!! | TTAATAATATCTTTTGCTCA+TGG | + | chr3.3:78745016-78745035 | MS.gene31039:intron | 20.0% |
| !!! | TTGTTATACTACGTTTATTT+TGG | + | chr3.3:78743344-78743363 | MS.gene31039:intron | 20.0% |
| !!! | TTTTAATTGCACTGTTTATT+AGG | + | chr3.3:78744593-78744612 | MS.gene31039:intron | 20.0% |
| ! | AATAAATAGAGCATAACCTA+TGG | - | chr3.3:78744901-78744920 | None:intergenic | 25.0% |
| ! | ATTATGGTCTGCAATATAAA+AGG | - | chr3.3:78744096-78744115 | None:intergenic | 25.0% |
| ! | CAACAAAGAAAACGATAATT+GGG | + | chr3.3:78744184-78744203 | MS.gene31039:intron | 25.0% |
| ! | CAGTTATATACATAAAATGC+TGG | - | chr3.3:78743623-78743642 | None:intergenic | 25.0% |
| ! | CTCAAAATTGCAACAAAAAA+AGG | - | chr3.3:78742791-78742810 | None:intergenic | 25.0% |
| ! | GAAAGATATTAGTATTACCA+TGG | - | chr3.3:78744483-78744502 | None:intergenic | 25.0% |
| ! | GTAAATTAAGACTAGAGATT+AGG | + | chr3.3:78744352-78744371 | MS.gene31039:intron | 25.0% |
| ! | GTGGATCAATATGTAATTAA+AGG | - | chr3.3:78744235-78744254 | None:intergenic | 25.0% |
| ! | TAAAAGCTATGTAAAGAAGT+TGG | + | chr3.3:78743956-78743975 | MS.gene31039:intron | 25.0% |
| ! | TACCAAAGTAGATATTTCTT+CGG | + | chr3.3:78745267-78745286 | MS.gene31039:CDS | 25.0% |
| ! | TAGATATACAATTGTATCCA+AGG | + | chr3.3:78743049-78743068 | MS.gene31039:intron | 25.0% |
| ! | TATTTATAATTACAGATGGC+TGG | + | chr3.3:78743118-78743137 | MS.gene31039:intron | 25.0% |
| ! | TTATCAGTAGAAATGAACAA+TGG | - | chr3.3:78742767-78742786 | None:intergenic | 25.0% |
| ! | TTTATATGATATCTTCAGGT+TGG | + | chr3.3:78742862-78742881 | MS.gene31039:intron | 25.0% |
| ! | TTTCCATTGAAAATTACATG+AGG | + | chr3.3:78743842-78743861 | MS.gene31039:intron | 25.0% |
| !! | ACAGTTTAGTTGTAAAGTTT+TGG | - | chr3.3:78743174-78743193 | None:intergenic | 25.0% |
| !! | TATACATTTTCATCACACTA+TGG | - | chr3.3:78744745-78744764 | None:intergenic | 25.0% |
| !!! | AAGATGTGGTGTTTTTTTAA+TGG | + | chr3.3:78742997-78743016 | MS.gene31039:intron | 25.0% |
| !!! | CTAAACCTACTTTTTTTATC+TGG | + | chr3.3:78744834-78744853 | MS.gene31039:intron | 25.0% |
| !!! | GTTTGTTTTGGATTTGTATT+TGG | + | chr3.3:78743739-78743758 | MS.gene31039:intron | 25.0% |
| !!! | TAGTTGTAAAGTTTTGGAAA+TGG | - | chr3.3:78743168-78743187 | None:intergenic | 25.0% |
| !!! | TGTTTGTTGAGTTGATATTT+TGG | + | chr3.3:78745388-78745407 | MS.gene31039:intron | 25.0% |
| !!! | TTACAATGCTTTTGCTTTTT+AGG | + | chr3.3:78745439-78745458 | MS.gene31039:intron | 25.0% |
| !!! | TTGTTTTGTCTGTTAAAACT+GGG | + | chr3.3:78742931-78742950 | MS.gene31039:intron | 25.0% |
| !!! | TTTTGCTTTTTAGGACAAAA+AGG | + | chr3.3:78745448-78745467 | MS.gene31039:intron | 25.0% |
| AACAGGTCAAACAATAACTA+AGG | - | chr3.3:78744011-78744030 | None:intergenic | 30.0% | |
| AACCGAAGAAATATCTACTT+TGG | - | chr3.3:78745272-78745291 | None:intergenic | 30.0% | |
| AACTCTTAGTGGTTACTTAT+AGG | - | chr3.3:78743889-78743908 | None:intergenic | 30.0% | |
| AATCACAATAACTCCACAAA+GGG | - | chr3.3:78742905-78742924 | None:intergenic | 30.0% | |
| ACATCCCAGATAAAAAAAGT+AGG | - | chr3.3:78744842-78744861 | None:intergenic | 30.0% | |
| AGACATGACAATATCGAATT+TGG | + | chr3.3:78744674-78744693 | MS.gene31039:intron | 30.0% | |
| AGTATGTTCAAATCTAGAGA+CGG | - | chr3.3:78744627-78744646 | None:intergenic | 30.0% | |
| ATGACAATATCGAATTTGGT+TGG | + | chr3.3:78744678-78744697 | MS.gene31039:intron | 30.0% | |
| ATTAATCTTGAATGGACCTA+AGG | - | chr3.3:78745200-78745219 | None:intergenic | 30.0% | |
| CCAACAAAGAAAACGATAAT+TGG | + | chr3.3:78744183-78744202 | MS.gene31039:intron | 30.0% | |
| CTAAACATTTCAACTCTTAG+TGG | - | chr3.3:78743900-78743919 | None:intergenic | 30.0% | |
| GGGATGTGTTTAAATATACT+AGG | + | chr3.3:78744855-78744874 | MS.gene31039:intron | 30.0% | |
| TAACAGATCCAAAATAAACG+TGG | - | chr3.3:78742820-78742839 | None:intergenic | 30.0% | |
| TAGAAACTGTTGATATTGGT+AGG | + | chr3.3:78743245-78743264 | MS.gene31039:intron | 30.0% | |
| TATAACTTTACCAACTTCCA+TGG | + | chr3.3:78744325-78744344 | MS.gene31039:intron | 30.0% | |
| TCAATAGAATTGAAAAACGC+TGG | - | chr3.3:78743288-78743307 | None:intergenic | 30.0% | |
| TGATGACAAGTATTTCTCAA+AGG | + | chr3.3:78745306-78745325 | MS.gene31039:CDS | 30.0% | |
| TGATGACTGAGTTAATATAG+TGG | + | chr3.3:78743086-78743105 | MS.gene31039:intron | 30.0% | |
| TTACATAGCGTTACAAAAAC+AGG | - | chr3.3:78744028-78744047 | None:intergenic | 30.0% | |
| TTAGGTCCATTCAAGATTAA+TGG | + | chr3.3:78745199-78745218 | MS.gene31039:intron | 30.0% | |
| TTAGTGGTTACTTATAGGAA+AGG | - | chr3.3:78743884-78743903 | None:intergenic | 30.0% | |
| ! | ACACCTCATGTAATTTTCAA+TGG | - | chr3.3:78743848-78743867 | None:intergenic | 30.0% |
| ! | CCAATTATCGTTTTCTTTGT+TGG | - | chr3.3:78744186-78744205 | None:intergenic | 30.0% |
| ! | CTATTTGGTTTCTTGTACTT+TGG | + | chr3.3:78744126-78744145 | MS.gene31039:intron | 30.0% |
| !!! | AGGTTGGTTTTTTTCAAAAC+AGG | - | chr3.3:78743991-78744010 | None:intergenic | 30.0% |
| !!! | CTTGTTTTGTCTGTTAAAAC+TGG | + | chr3.3:78742930-78742949 | MS.gene31039:intron | 30.0% |
| ACCTAGTTATACATCTCCAT+AGG | + | chr3.3:78744882-78744901 | MS.gene31039:intron | 35.0% | |
| ACCTATGGAGATGTATAACT+AGG | - | chr3.3:78744886-78744905 | None:intergenic | 35.0% | |
| AGTCTTAATTTACACCTCCA+TGG | - | chr3.3:78744345-78744364 | None:intergenic | 35.0% | |
| ATATTAGTTGCTACCAATGC+TGG | - | chr3.3:78743226-78743245 | None:intergenic | 35.0% | |
| ATCACAATAACTCCACAAAG+GGG | - | chr3.3:78742904-78742923 | None:intergenic | 35.0% | |
| ATTCATCACACTAAGGTAAG+AGG | - | chr3.3:78744706-78744725 | None:intergenic | 35.0% | |
| CAACTCAATTCATCACACTA+AGG | - | chr3.3:78744713-78744732 | None:intergenic | 35.0% | |
| CCTATTAATATGCTTGTCAC+AGG | + | chr3.3:78744398-78744417 | MS.gene31039:intron | 35.0% | |
| CCTGTGACAAGCATATTAAT+AGG | - | chr3.3:78744401-78744420 | None:intergenic | 35.0% | |
| CGATGGTCTATTAGTGAAAT+AGG | + | chr3.3:78744647-78744666 | MS.gene31039:intron | 35.0% | |
| CTAGATTTGAACATACTCGA+TGG | + | chr3.3:78744630-78744649 | MS.gene31039:intron | 35.0% | |
| CTTCTTGCTGGAAGATTTAA+GGG | + | chr3.3:78743510-78743529 | MS.gene31039:CDS | 35.0% | |
| GAAATTTAATTCCCCCTTTG+TGG | + | chr3.3:78742889-78742908 | MS.gene31039:intron | 35.0% | |
| GAAGATTTGTCAAAGATGAG+TGG | - | chr3.3:78745159-78745178 | None:intergenic | 35.0% | |
| GAATCACAATAACTCCACAA+AGG | - | chr3.3:78742906-78742925 | None:intergenic | 35.0% | |
| GCAATCAGTCAATAAACAAG+AGG | - | chr3.3:78743414-78743433 | None:intergenic | 35.0% | |
| GCTGATGTTTGATTAAGATG+TGG | + | chr3.3:78742983-78743002 | MS.gene31039:intron | 35.0% | |
| GGTCAAACAATAACTAAGGT+TGG | - | chr3.3:78744007-78744026 | None:intergenic | 35.0% | |
| GGTCAGAGTAAAAAATTCCA+TGG | + | chr3.3:78744463-78744482 | MS.gene31039:intron | 35.0% | |
| GTGAATCAGGCTTATGTTAT+CGG | + | chr3.3:78745238-78745257 | MS.gene31039:CDS | 35.0% | |
| GTTAACTCAATCATCATCTG+TGG | - | chr3.3:78744949-78744968 | None:intergenic | 35.0% | |
| TCTTCTTGCTGGAAGATTTA+AGG | + | chr3.3:78743509-78743528 | MS.gene31039:CDS | 35.0% | |
| TGAAAATTACATGAGGTGTG+TGG | + | chr3.3:78743849-78743868 | MS.gene31039:intron | 35.0% | |
| TGGAGATGTATAACTAGGTT+TGG | - | chr3.3:78744881-78744900 | None:intergenic | 35.0% | |
| TTGTTCACTCTCATTACCTT+AGG | + | chr3.3:78745181-78745200 | MS.gene31039:intron | 35.0% | |
| ! | AGTAACTGCCACGTTTATTT+TGG | + | chr3.3:78742809-78742828 | MS.gene31039:intron | 35.0% |
| ! | TTCAAATCTAGAGACGGATT+AGG | - | chr3.3:78744621-78744640 | None:intergenic | 35.0% |
| ! | TTTTGTCTGTTAAAACTGGG+TGG | + | chr3.3:78742934-78742953 | MS.gene31039:intron | 35.0% |
| !! | GGTACCTGAATTTGTTTTCA+GGG | + | chr3.3:78743458-78743477 | MS.gene31039:intron | 35.0% |
| !! | TCAAATCTAGAGACGGATTA+GGG | - | chr3.3:78744620-78744639 | None:intergenic | 35.0% |
| !! | TGGTACCTGAATTTGTTTTC+AGG | + | chr3.3:78743457-78743476 | MS.gene31039:intron | 35.0% |
| AACTTTACCAACTTCCATGG+AGG | + | chr3.3:78744328-78744347 | MS.gene31039:intron | 40.0% | |
| ATCCCAGAAAAAGACGAAGA+AGG | + | chr3.3:78745330-78745349 | MS.gene31039:CDS | 40.0% | |
| ATGCAAGTGACCATAGACAA+TGG | - | chr3.3:78745045-78745064 | None:intergenic | 40.0% | |
| ATTTACACCTCCATGGAAGT+TGG | - | chr3.3:78744338-78744357 | None:intergenic | 40.0% | |
| CCAGACTTGAAAACTTACCT+AGG | + | chr3.3:78745542-78745561 | MS.gene31039:CDS | 40.0% | |
| CTCATGGTTTCCATTGTCTA+TGG | + | chr3.3:78745032-78745051 | MS.gene31039:intron | 40.0% | |
| GAAGCCCTGAAAACAAATTC+AGG | - | chr3.3:78743465-78743484 | None:intergenic | 40.0% | |
| GATCATCTTTCTTCTCCTGA+GGG | - | chr3.3:78745478-78745497 | None:intergenic | 40.0% | |
| GATTTGTCAAAGATGAGTGG+AGG | - | chr3.3:78745156-78745175 | None:intergenic | 40.0% | |
| GCTATGTAAAGAAGTTGGAC+AGG | + | chr3.3:78743961-78743980 | MS.gene31039:intron | 40.0% | |
| GGGACTCCATTAATCTTGAA+TGG | - | chr3.3:78745208-78745227 | None:intergenic | 40.0% | |
| GGTAGTACATTTATGGATGC+AGG | + | chr3.3:78744063-78744082 | MS.gene31039:intron | 40.0% | |
| GTAACAAGAAGAAGTCCAGA+AGG | - | chr3.3:78743564-78743583 | None:intergenic | 40.0% | |
| TATTGGTAGGAACTAAGCTC+AGG | + | chr3.3:78743258-78743277 | MS.gene31039:intron | 40.0% | |
| TCACAATAACTCCACAAAGG+GGG | - | chr3.3:78742903-78742922 | None:intergenic | 40.0% | |
| TCCCAGAAAAAGACGAAGAA+GGG | + | chr3.3:78745331-78745350 | MS.gene31039:CDS | 40.0% | |
| TCTGCTATGTATCACAAACG+TGG | + | chr3.3:78742574-78742593 | MS.gene31039:CDS | 40.0% | |
| TCTGGACTTCTTCTTGTTAC+CGG | + | chr3.3:78743564-78743583 | MS.gene31039:CDS | 40.0% | |
| TGATCATCTTTCTTCTCCTG+AGG | - | chr3.3:78745479-78745498 | None:intergenic | 40.0% | |
| TGTCCGAACTTGAACTTTAC+TGG | + | chr3.3:78744375-78744394 | MS.gene31039:intron | 40.0% | |
| TTTCCATTGTGTATGTCCAC+TGG | + | chr3.3:78744807-78744826 | MS.gene31039:intron | 40.0% | |
| TTTCTCAAACAGCTTCCTTC+TGG | + | chr3.3:78743546-78743565 | MS.gene31039:CDS | 40.0% | |
| TTTCTTCCTGCATTAGTGCT+GGG | + | chr3.3:78742961-78742980 | MS.gene31039:intron | 40.0% | |
| ! | AGGCCAGTAAAGTTCAAGTT+CGG | - | chr3.3:78744381-78744400 | None:intergenic | 40.0% |
| ! | TCCCTTCTTCGTCTTTTTCT+GGG | - | chr3.3:78745335-78745354 | None:intergenic | 40.0% |
| !! | ACAGTGTTGATTCTTCTTGC+TGG | + | chr3.3:78743498-78743517 | MS.gene31039:CDS | 40.0% |
| !! | TGAAGAAAGAGTACCAGCAT+TGG | + | chr3.3:78743210-78743229 | MS.gene31039:intron | 40.0% |
| !!! | ACTCTTGCGGTTCTTGTTTT+TGG | - | chr3.3:78742508-78742527 | None:intergenic | 40.0% |
| !!! | CCTAGGTAAGTTTTCAAGTC+TGG | - | chr3.3:78745545-78745564 | None:intergenic | 40.0% |
| AAGTAGGTTTAGCATGCCAG+TGG | - | chr3.3:78744826-78744845 | None:intergenic | 45.0% | |
| AGAAGAATCAACACTGTCCC+TGG | - | chr3.3:78743495-78743514 | None:intergenic | 45.0% | |
| AGGTGAGCAGAGTTATGTGT+TGG | + | chr3.3:78744534-78744553 | MS.gene31039:intron | 45.0% | |
| ATGCCAGTGGACATACACAA+TGG | - | chr3.3:78744813-78744832 | None:intergenic | 45.0% | |
| GATCAAAAGACTGTCGATGC+TGG | + | chr3.3:78745494-78745513 | MS.gene31039:CDS | 45.0% | |
| GGTGAGCAGAGTTATGTGTT+GGG | + | chr3.3:78744535-78744554 | MS.gene31039:intron | 45.0% | |
| GTAAAACTTAGGCGGCTTCT+CGG | - | chr3.3:78742674-78742693 | None:intergenic | 45.0% | |
| GTATCACAAACGTGGTCTCT+GGG | + | chr3.3:78742582-78742601 | MS.gene31039:CDS | 45.0% | |
| GTCTGTTAAAACTGGGTGGT+GGG | + | chr3.3:78742938-78742957 | MS.gene31039:intron | 45.0% | |
| GTGAGCAGAGTTATGTGTTG+GGG | + | chr3.3:78744536-78744555 | MS.gene31039:intron | 45.0% | |
| GTTTCTTCCTGCATTAGTGC+TGG | + | chr3.3:78742960-78742979 | MS.gene31039:intron | 45.0% | |
| TCAGGGCTTCTATTACTCCA+GGG | + | chr3.3:78743475-78743494 | MS.gene31039:intron | 45.0% | |
| TGAAAACTTACCTAGGTGCC+AGG | + | chr3.3:78745549-78745568 | MS.gene31039:CDS | 45.0% | |
| TGAGCAGAGTTATGTGTTGG+GGG | + | chr3.3:78744537-78744556 | MS.gene31039:intron | 45.0% | |
| TGTATCACAAACGTGGTCTC+TGG | + | chr3.3:78742581-78742600 | MS.gene31039:CDS | 45.0% | |
| TGTCTGTTAAAACTGGGTGG+TGG | + | chr3.3:78742937-78742956 | MS.gene31039:intron | 45.0% | |
| TTCAGGGCTTCTATTACTCC+AGG | + | chr3.3:78743474-78743493 | MS.gene31039:intron | 45.0% | |
| ! | CAAGTCTGGAACACTGTCAA+TGG | - | chr3.3:78745531-78745550 | None:intergenic | 45.0% |
| ! | CTCCCTTCTTCGTCTTTTTC+TGG | - | chr3.3:78745336-78745355 | None:intergenic | 45.0% |
| !! | CGAGTTCTTTGAGGCAGATA+AGG | + | chr3.3:78745360-78745379 | MS.gene31039:CDS | 45.0% |
| !! | GTTCTTTGAGGCAGATAAGG+AGG | + | chr3.3:78745363-78745382 | MS.gene31039:CDS | 45.0% |
| !!! | AACCTGAGCTTAGTGGGTTT+TGG | - | chr3.3:78742739-78742758 | None:intergenic | 45.0% |
| !!! | GTTTTGGCTTGTGCTTGTTG+CGG | - | chr3.3:78742723-78742742 | None:intergenic | 45.0% |
| ACCTGCCTTCAAGGAAAACC+TGG | - | chr3.3:78745570-78745589 | None:intergenic | 50.0% | |
| AGCCAAAACCCACTAAGCTC+AGG | + | chr3.3:78742734-78742753 | MS.gene31039:CDS | 50.0% | |
| AGCCTGATTCACACGTCTCA+AGG | - | chr3.3:78745230-78745249 | None:intergenic | 50.0% | |
| AGGTGTGAAGCCACATGAGT+TGG | + | chr3.3:78745586-78745605 | MS.gene31039:CDS | 50.0% | |
| CCCTGATCAAGTCAGGGTTA+CGG | - | chr3.3:78742534-78742553 | None:intergenic | 50.0% | |
| CCTGATTCACACGTCTCAAG+GGG | - | chr3.3:78745228-78745247 | None:intergenic | 50.0% | |
| CGATACCCCTGATCAAGTCA+GGG | - | chr3.3:78742540-78742559 | None:intergenic | 50.0% | |
| GCCTGATTCACACGTCTCAA+GGG | - | chr3.3:78745229-78745248 | None:intergenic | 50.0% | |
| GTGACGAACCTGAGCTTAGT+GGG | - | chr3.3:78742745-78742764 | None:intergenic | 50.0% | |
| TCAACAAGCTGAACGAGCCT+TGG | - | chr3.3:78743069-78743088 | None:intergenic | 50.0% | |
| TCAAGGAAAACCTGGCACCT+AGG | - | chr3.3:78745562-78745581 | None:intergenic | 50.0% | |
| TGGGCAATCAAGGCTAAGCA+CGG | + | chr3.3:78742601-78742620 | MS.gene31039:CDS | 50.0% | |
| ! | AGGTGCCAGGTTTTCCTTGA+AGG | + | chr3.3:78745562-78745581 | MS.gene31039:CDS | 50.0% |
| ! | CCGTAACCCTGACTTGATCA+GGG | + | chr3.3:78742531-78742550 | MS.gene31039:CDS | 50.0% |
| ! | CCTGACTTGATCAGGGGTAT+CGG | + | chr3.3:78742538-78742557 | MS.gene31039:CDS | 50.0% |
| ! | CGTAACCCTGACTTGATCAG+GGG | + | chr3.3:78742532-78742551 | MS.gene31039:CDS | 50.0% |
| ACGTGGTCTCTGGGCAATCA+AGG | + | chr3.3:78742591-78742610 | MS.gene31039:CDS | 55.0% | |
| AGGGTTACGGCTCACTCTTG+CGG | - | chr3.3:78742521-78742540 | None:intergenic | 55.0% | |
| CATCAGCCCAGCACTAATGC+AGG | - | chr3.3:78742970-78742989 | None:intergenic | 55.0% | |
| CCCCTTGAGACGTGTGAATC+AGG | + | chr3.3:78745225-78745244 | MS.gene31039:CDS | 55.0% | |
| CCGATACCCCTGATCAAGTC+AGG | - | chr3.3:78742541-78742560 | None:intergenic | 55.0% | |
| GAGTGGCTTCTTCACGTCGT+CGG | - | chr3.3:78742701-78742720 | None:intergenic | 55.0% | |
| GCAATCAAGGCTAAGCACGG+TGG | + | chr3.3:78742604-78742623 | MS.gene31039:CDS | 55.0% | |
| GGGAGAGAGCGAGTTCTTTG+AGG | + | chr3.3:78745351-78745370 | MS.gene31039:CDS | 55.0% | |
| GGTGACGAACCTGAGCTTAG+TGG | - | chr3.3:78742746-78742765 | None:intergenic | 55.0% | |
| TCGGCGGGGTAAAACTTAGG+CGG | - | chr3.3:78742682-78742701 | None:intergenic | 55.0% | |
| TCGTCGGCGGGGTAAAACTT+AGG | - | chr3.3:78742685-78742704 | None:intergenic | 55.0% | |
| TGGCTTCACACCTGCCTTCA+AGG | - | chr3.3:78745579-78745598 | None:intergenic | 55.0% | |
| ! | GCCAGGTTTTCCTTGAAGGC+AGG | + | chr3.3:78745566-78745585 | MS.gene31039:CDS | 55.0% |
| ! | GCCGTAACCCTGACTTGATC+AGG | + | chr3.3:78742530-78742549 | MS.gene31039:CDS | 55.0% |
| !! | GGACAAAAAGGTGCTCCCTC+AGG | + | chr3.3:78745460-78745479 | MS.gene31039:intron | 55.0% |
| AACTTAGGCGGCTTCTCGGC+CGG | - | chr3.3:78742670-78742689 | None:intergenic | 60.0% | |
| TGGCTTCTTCACGTCGTCGG+CGG | - | chr3.3:78742698-78742717 | None:intergenic | 60.0% | |
| ! | GGCTTGTGCTTGTTGCGGAG+TGG | - | chr3.3:78742718-78742737 | None:intergenic | 60.0% |
| CAGGCTTAGCGACGGGATCG+TGG | - | chr3.3:78742642-78742661 | None:intergenic | 65.0% | |
| CGGAGCTGCAGGCTTAGCGA+CGG | - | chr3.3:78742650-78742669 | None:intergenic | 65.0% | |
| CGTCGCTAAGCCTGCAGCTC+CGG | + | chr3.3:78742648-78742667 | MS.gene31039:CDS | 65.0% | |
| GCTTCTTCACGTCGTCGGCG+GGG | - | chr3.3:78742696-78742715 | None:intergenic | 65.0% | |
| GGAGCTGCAGGCTTAGCGAC+GGG | - | chr3.3:78742649-78742668 | None:intergenic | 65.0% | |
| GGCTTCTTCACGTCGTCGGC+GGG | - | chr3.3:78742697-78742716 | None:intergenic | 65.0% | |
| TAGCGACGGGATCGTGGCGA+GGG | - | chr3.3:78742636-78742655 | None:intergenic | 65.0% | |
| TTAGCGACGGGATCGTGGCG+AGG | - | chr3.3:78742637-78742656 | None:intergenic | 65.0% | |
| GGCTTCTCGGCCGGAGCTGC+AGG | - | chr3.3:78742661-78742680 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78742499 | 78745616 | 78742499 | ID=MS.gene31039 |
| chr3.3 | mRNA | 78742499 | 78745616 | 78742499 | ID=MS.gene31039.t1;Parent=MS.gene31039 |
| chr3.3 | exon | 78742499 | 78742755 | 78742499 | ID=MS.gene31039.t1.exon1;Parent=MS.gene31039.t1 |
| chr3.3 | CDS | 78742499 | 78742755 | 78742499 | ID=cds.MS.gene31039.t1;Parent=MS.gene31039.t1 |
| chr3.3 | exon | 78743479 | 78743585 | 78743479 | ID=MS.gene31039.t1.exon2;Parent=MS.gene31039.t1 |
| chr3.3 | CDS | 78743479 | 78743585 | 78743479 | ID=cds.MS.gene31039.t1;Parent=MS.gene31039.t1 |
| chr3.3 | exon | 78745203 | 78745384 | 78745203 | ID=MS.gene31039.t1.exon3;Parent=MS.gene31039.t1 |
| chr3.3 | CDS | 78745203 | 78745384 | 78745203 | ID=cds.MS.gene31039.t1;Parent=MS.gene31039.t1 |
| chr3.3 | exon | 78745461 | 78745616 | 78745461 | ID=MS.gene31039.t1.exon4;Parent=MS.gene31039.t1 |
| chr3.3 | CDS | 78745461 | 78745616 | 78745461 | ID=cds.MS.gene31039.t1;Parent=MS.gene31039.t1 |
| Gene Sequence |
| Protein sequence |
