Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036194.t1 | XP_003590594.1 | 98.6 | 656 | 9 | 0 | 1 | 656 | 1 | 656 | 0.00E+00 | 1199.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036194.t1 | Q9SV13 | 70.0 | 660 | 192 | 4 | 1 | 656 | 1 | 658 | 4.7e-261 | 901.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036194.t1 | G7IDK9 | 98.6 | 656 | 9 | 0 | 1 | 656 | 1 | 656 | 0.0e+00 | 1199.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene75452 | MS.gene036194 | PPI |
MS.gene006936 | MS.gene036194 | PPI |
MS.gene045087 | MS.gene036194 | PPI |
MS.gene059517 | MS.gene036194 | PPI |
MS.gene036194 | MS.gene36287 | PPI |
MS.gene89102 | MS.gene036194 | PPI |
MS.gene036194 | MS.gene92478 | PPI |
MS.gene036194 | MS.gene79239 | PPI |
MS.gene036194 | MS.gene061401 | PPI |
MS.gene56083 | MS.gene036194 | PPI |
MS.gene33360 | MS.gene036194 | PPI |
MS.gene98424 | MS.gene036194 | PPI |
MS.gene036194 | MS.gene43089 | PPI |
MS.gene033981 | MS.gene036194 | PPI |
MS.gene052232 | MS.gene036194 | PPI |
MS.gene036194 | MS.gene98424 | PPI |
MS.gene036194 | MS.gene33361 | PPI |
MS.gene61200 | MS.gene036194 | PPI |
MS.gene036194 | MS.gene33359 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036194.t1 | MTR_1g071530 | 98.628 | 656 | 9 | 0 | 1 | 656 | 1 | 656 | 0.0 | 1336 |
MS.gene036194.t1 | MTR_7g095430 | 83.308 | 659 | 104 | 4 | 1 | 656 | 1 | 656 | 0.0 | 1095 |
MS.gene036194.t1 | MTR_7g095430 | 86.387 | 573 | 75 | 3 | 1 | 573 | 1 | 570 | 0.0 | 985 |
MS.gene036194.t1 | MTR_2g102243 | 57.387 | 643 | 274 | 0 | 3 | 645 | 5 | 647 | 0.0 | 769 |
MS.gene036194.t1 | MTR_4g084620 | 55.864 | 648 | 281 | 3 | 4 | 649 | 1 | 645 | 0.0 | 753 |
MS.gene036194.t1 | MTR_5g061880 | 55.112 | 626 | 280 | 1 | 21 | 645 | 30 | 655 | 0.0 | 747 |
MS.gene036194.t1 | MTR_4g084640 | 55.590 | 644 | 276 | 2 | 10 | 645 | 3 | 644 | 0.0 | 745 |
MS.gene036194.t1 | MTR_4g011970 | 56.230 | 626 | 274 | 0 | 20 | 645 | 29 | 654 | 0.0 | 737 |
MS.gene036194.t1 | MTR_2g102243 | 58.261 | 575 | 240 | 0 | 3 | 577 | 5 | 579 | 0.0 | 709 |
MS.gene036194.t1 | MTR_6g086170 | 52.194 | 638 | 298 | 4 | 15 | 649 | 3 | 636 | 0.0 | 702 |
MS.gene036194.t1 | MTR_3g073780 | 54.299 | 628 | 283 | 3 | 21 | 645 | 33 | 659 | 0.0 | 701 |
MS.gene036194.t1 | MTR_2g008470 | 53.409 | 616 | 285 | 2 | 20 | 634 | 53 | 667 | 0.0 | 674 |
MS.gene036194.t1 | MTR_2g008470 | 53.409 | 616 | 285 | 2 | 20 | 634 | 34 | 648 | 0.0 | 674 |
MS.gene036194.t1 | MTR_3g073780 | 55.315 | 555 | 244 | 3 | 21 | 572 | 33 | 586 | 0.0 | 642 |
MS.gene036194.t1 | MTR_3g073780 | 56.357 | 527 | 227 | 2 | 21 | 544 | 33 | 559 | 0.0 | 623 |
MS.gene036194.t1 | MTR_5g061860 | 47.191 | 623 | 316 | 5 | 26 | 637 | 26 | 646 | 0.0 | 583 |
MS.gene036194.t1 | MTR_3g087740 | 46.591 | 616 | 323 | 5 | 27 | 638 | 37 | 650 | 0.0 | 575 |
MS.gene036194.t1 | MTR_3g073730 | 44.099 | 644 | 344 | 5 | 2 | 637 | 17 | 652 | 0.0 | 547 |
MS.gene036194.t1 | MTR_5g061860 | 48.302 | 530 | 262 | 4 | 26 | 544 | 26 | 554 | 1.33e-174 | 509 |
MS.gene036194.t1 | MTR_3g087730 | 38.782 | 624 | 362 | 9 | 27 | 636 | 34 | 651 | 8.19e-153 | 457 |
MS.gene036194.t1 | MTR_7g022870 | 36.222 | 577 | 354 | 7 | 65 | 637 | 70 | 636 | 1.70e-128 | 395 |
MS.gene036194.t1 | MTR_7g022870 | 37.305 | 512 | 307 | 7 | 65 | 572 | 70 | 571 | 1.31e-113 | 353 |
MS.gene036194.t1 | MTR_6g024420 | 29.801 | 151 | 85 | 4 | 202 | 352 | 35 | 164 | 2.50e-15 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036194.t1 | AT3G51895 | 74.394 | 660 | 163 | 4 | 1 | 656 | 1 | 658 | 0.0 | 1018 |
MS.gene036194.t1 | AT3G51895 | 74.394 | 660 | 163 | 4 | 1 | 656 | 46 | 703 | 0.0 | 1018 |
MS.gene036194.t1 | AT4G02700 | 69.702 | 637 | 192 | 1 | 21 | 656 | 10 | 646 | 0.0 | 922 |
MS.gene036194.t1 | AT3G15990 | 57.030 | 633 | 271 | 1 | 12 | 644 | 19 | 650 | 0.0 | 749 |
MS.gene036194.t1 | AT1G23090 | 57.005 | 621 | 266 | 1 | 20 | 639 | 3 | 623 | 0.0 | 747 |
MS.gene036194.t1 | AT4G08620 | 55.049 | 614 | 275 | 1 | 26 | 638 | 28 | 641 | 0.0 | 685 |
MS.gene036194.t1 | AT5G19600 | 52.548 | 628 | 282 | 4 | 21 | 644 | 15 | 630 | 0.0 | 681 |
MS.gene036194.t1 | AT1G78000 | 54.560 | 625 | 283 | 1 | 14 | 637 | 21 | 645 | 0.0 | 677 |
MS.gene036194.t1 | AT1G78000 | 54.560 | 625 | 283 | 1 | 14 | 637 | 21 | 645 | 0.0 | 677 |
MS.gene036194.t1 | AT1G78000 | 54.560 | 625 | 283 | 1 | 14 | 637 | 21 | 645 | 0.0 | 677 |
MS.gene036194.t1 | AT1G22150 | 52.742 | 620 | 292 | 1 | 20 | 638 | 30 | 649 | 0.0 | 669 |
MS.gene036194.t1 | AT1G22150 | 52.742 | 620 | 292 | 1 | 20 | 638 | 30 | 649 | 0.0 | 669 |
MS.gene036194.t1 | AT1G22150 | 52.742 | 620 | 292 | 1 | 20 | 638 | 30 | 649 | 0.0 | 669 |
MS.gene036194.t1 | AT1G78000 | 54.514 | 587 | 266 | 1 | 14 | 599 | 21 | 607 | 0.0 | 640 |
MS.gene036194.t1 | AT1G78000 | 55.000 | 560 | 251 | 1 | 14 | 572 | 21 | 580 | 0.0 | 614 |
MS.gene036194.t1 | AT1G22150 | 53.430 | 554 | 257 | 1 | 20 | 572 | 30 | 583 | 0.0 | 610 |
MS.gene036194.t1 | AT5G10180 | 48.701 | 616 | 309 | 6 | 27 | 637 | 59 | 672 | 0.0 | 587 |
MS.gene036194.t1 | AT1G23090 | 55.193 | 491 | 219 | 1 | 150 | 639 | 1 | 491 | 0.0 | 563 |
MS.gene036194.t1 | AT1G23090 | 55.193 | 491 | 219 | 1 | 150 | 639 | 1 | 491 | 0.0 | 563 |
MS.gene036194.t1 | AT1G23090 | 55.193 | 491 | 219 | 1 | 150 | 639 | 1 | 491 | 0.0 | 563 |
MS.gene036194.t1 | AT1G77990 | 48.616 | 578 | 286 | 4 | 65 | 634 | 89 | 663 | 0.0 | 550 |
MS.gene036194.t1 | AT1G78000 | 56.051 | 471 | 206 | 1 | 14 | 483 | 21 | 491 | 2.20e-176 | 512 |
MS.gene036194.t1 | AT1G78000 | 53.933 | 445 | 204 | 1 | 129 | 572 | 1 | 445 | 8.72e-162 | 473 |
MS.gene036194.t1 | AT3G12520 | 37.435 | 577 | 339 | 9 | 69 | 637 | 51 | 613 | 1.56e-126 | 389 |
MS.gene036194.t1 | AT3G12520 | 37.435 | 577 | 339 | 9 | 69 | 637 | 67 | 629 | 2.93e-126 | 389 |
MS.gene036194.t1 | AT5G13550 | 36.174 | 622 | 361 | 12 | 24 | 637 | 49 | 642 | 6.79e-125 | 385 |
MS.gene036194.t1 | AT3G12520 | 39.085 | 481 | 276 | 7 | 69 | 544 | 67 | 535 | 6.33e-109 | 339 |
Find 138 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTGTATATTACAGAATT+TGG | 0.105263 | 1.3:-51401009 | None:intergenic |
ACCCTCTGATTCATCTCTTT+TGG | 0.151425 | 1.3:-51401736 | None:intergenic |
TGGAGGAAGGTTGGCAAGTT+TGG | 0.241408 | 1.3:-51393370 | None:intergenic |
GCCAACCTTCCTCCAATTCT+TGG | 0.242711 | 1.3:+51393378 | MS.gene036194:CDS |
AGAAACAACCGAGGTTCTTT+TGG | 0.253280 | 1.3:+51396280 | MS.gene036194:CDS |
CGTCTGCATTAGCGCATATA+TGG | 0.260758 | 1.3:+51400793 | MS.gene036194:CDS |
GCTTGGTGCCCATTCAAATA+TGG | 0.263411 | 1.3:-51393265 | None:intergenic |
CCGAATGCAAATCGTGTTTC+CGG | 0.263737 | 1.3:+51401045 | MS.gene036194:CDS |
TTCTTCATCACCTCACTTCC+AGG | 0.268686 | 1.3:-51401612 | None:intergenic |
CTTGCATTGGCAAAGTAAAT+TGG | 0.276343 | 1.3:-51401093 | None:intergenic |
AAGCTTCATTGGGTCTCTTT+AGG | 0.281055 | 1.3:+51394458 | MS.gene036194:CDS |
AAGGCCAAGGACATTTGTTT+TGG | 0.282863 | 1.3:+51400978 | MS.gene036194:CDS |
GTCTTTGGCAGTGTTGAAAT+TGG | 0.299924 | 1.3:+51400821 | MS.gene036194:CDS |
CAGCAGCTGAAATCAATTCT+AGG | 0.300141 | 1.3:+51395353 | MS.gene036194:CDS |
GCATATATGGGCGTTGTCTT+TGG | 0.305788 | 1.3:+51400806 | MS.gene036194:CDS |
AATTTCCTCCTACATCCTTT+TGG | 0.307255 | 1.3:-51401653 | None:intergenic |
AAAAGGATGTAGGAGGAAAT+TGG | 0.320530 | 1.3:+51401655 | MS.gene036194:CDS |
GCCGTTGGCGTCAGTTATAC+TGG | 0.320781 | 1.3:+51396317 | MS.gene036194:CDS |
CCTATGATTACAGCTTGTTT+TGG | 0.325648 | 1.3:+51401584 | MS.gene036194:intron |
CTGTCACATGCAGCCATAGT+AGG | 0.326137 | 1.3:+51395296 | MS.gene036194:CDS |
TTCACGGCCGAACGCGAAAA+TGG | 0.329931 | 1.3:-51400572 | None:intergenic |
GATGGGTAGTTCAAGGGATT+TGG | 0.335800 | 1.3:+51394306 | MS.gene036194:CDS |
TTCACAGCTACATTCTTTGC+TGG | 0.345288 | 1.3:+51394427 | MS.gene036194:CDS |
GAGCTATAATGCCAACAATA+AGG | 0.345823 | 1.3:-51397347 | None:intergenic |
AACCTCCTCAATGGATCATC+TGG | 0.355664 | 1.3:-51393189 | None:intergenic |
AAGCATTGCAGATACAATTA+TGG | 0.359813 | 1.3:-51400711 | None:intergenic |
GAAGATAGAATTAAAGATAC+AGG | 0.366754 | 1.3:+51401260 | MS.gene036194:CDS |
TTGATAGCTGTGGTCATATA+TGG | 0.367436 | 1.3:-51397318 | None:intergenic |
ACCGTTAATTTATGCAATGA+TGG | 0.385050 | 1.3:+51394288 | MS.gene036194:CDS |
TCCACCATCACTCACAGATT+TGG | 0.390915 | 1.3:+51397284 | MS.gene036194:CDS |
CCCATCATTGCATAAATTAA+CGG | 0.402423 | 1.3:-51394289 | None:intergenic |
TATGATGATTACCCATGTTC+AGG | 0.406136 | 1.3:+51393072 | MS.gene036194:CDS |
AACTCACATAGTCCAAGAAT+TGG | 0.411726 | 1.3:-51393390 | None:intergenic |
ACCTCTTGCTACCTCACAAC+TGG | 0.412059 | 1.3:+51398878 | MS.gene036194:CDS |
TTTGGTTATTGCAGTGGAGG+TGG | 0.420288 | 1.3:+51395712 | MS.gene036194:intron |
TCCTCCCATGAACCCTACTA+TGG | 0.424696 | 1.3:-51395309 | None:intergenic |
ATGACCACAGCTATCAAAAC+TGG | 0.429051 | 1.3:+51397324 | MS.gene036194:CDS |
GTCTGCATTAGCGCATATAT+GGG | 0.430147 | 1.3:+51400794 | MS.gene036194:CDS |
ATCAAAACTGGCCTTATTGT+TGG | 0.431517 | 1.3:+51397336 | MS.gene036194:CDS |
AATCTTTAGAATTAGAATTC+CGG | 0.433702 | 1.3:-51401064 | None:intergenic |
GGCAGTTGGATCTCTTCTGA+TGG | 0.434035 | 1.3:+51394342 | MS.gene036194:CDS |
TGCAGCCATAGTAGGGTTCA+TGG | 0.439490 | 1.3:+51395304 | MS.gene036194:CDS |
CTTGGTGCCCATTCAAATAT+GGG | 0.439545 | 1.3:-51393264 | None:intergenic |
AACAAAGAGATGATAGCTAT+TGG | 0.443400 | 1.3:+51398830 | MS.gene036194:CDS |
TTTGTTCTATTACACTCCTC+TGG | 0.447769 | 1.3:+51400676 | MS.gene036194:CDS |
GAAAGAACCAACTATGTTCA+TGG | 0.448133 | 1.3:-51398855 | None:intergenic |
AGTTCAAGGGATTTGGCAGT+TGG | 0.456451 | 1.3:+51394313 | MS.gene036194:CDS |
TTGGGTAGGATTAACCTCAT+TGG | 0.460340 | 1.3:-51394377 | None:intergenic |
TGGCATCACTATTGCTAGCT+TGG | 0.462798 | 1.3:+51393323 | MS.gene036194:CDS |
CACTTGAACACCGTGGTGCT+CGG | 0.463889 | 1.3:-51396367 | None:intergenic |
TCTTCTGATGGGTTCCATGT+TGG | 0.465867 | 1.3:+51394354 | MS.gene036194:CDS |
CCGGAAACACGATTTGCATT+CGG | 0.466507 | 1.3:-51401045 | None:intergenic |
GCATCCAGCATTATAGTTCA+CGG | 0.466809 | 1.3:-51400588 | None:intergenic |
TACTATTTGTTGCAAGGCCA+AGG | 0.467032 | 1.3:+51400965 | MS.gene036194:CDS |
ATTGGAACCATGAACATAGT+TGG | 0.470036 | 1.3:+51398848 | MS.gene036194:CDS |
AGTTATACTGGGAAGTGTGC+TGG | 0.472150 | 1.3:+51396329 | MS.gene036194:CDS |
ATGCAATGATGGGTAGTTCA+AGG | 0.474788 | 1.3:+51394299 | MS.gene036194:CDS |
AGGTGGGAAAGCGCTGTGTT+GGG | 0.476059 | 1.3:+51395729 | MS.gene036194:CDS |
CTCTCTTAAATAGCTTGCAT+TGG | 0.477563 | 1.3:-51401106 | None:intergenic |
CAGATAGGAGAATTGAAGAA+AGG | 0.483632 | 1.3:+51397255 | MS.gene036194:intron |
TGATTCTTAAACCTCCTCAA+TGG | 0.483943 | 1.3:-51393198 | None:intergenic |
ATGAAGCAGCCATCCATCTC+TGG | 0.484288 | 1.3:+51400747 | MS.gene036194:CDS |
TTGGTTATTGCAGTGGAGGT+GGG | 0.486649 | 1.3:+51395713 | MS.gene036194:intron |
AGGTTGCAATATCAGTGCTT+CGG | 0.492752 | 1.3:+51400938 | MS.gene036194:intron |
CTACTATGGCTGCATGTGAC+AGG | 0.495854 | 1.3:-51395295 | None:intergenic |
GCAGTTGGATCTCTTCTGAT+GGG | 0.498638 | 1.3:+51394343 | MS.gene036194:CDS |
TTTCCCAAAACAAATGTCCT+TGG | 0.500266 | 1.3:-51400982 | None:intergenic |
ATAATTGTATCTGCAATGCT+TGG | 0.501731 | 1.3:+51400713 | MS.gene036194:CDS |
CAACAAATCCAGCTTCCAAA+AGG | 0.505659 | 1.3:+51401638 | MS.gene036194:CDS |
TTGAAATCTGATCTCATAGC+TGG | 0.511965 | 1.3:+51393303 | MS.gene036194:CDS |
TGCAATGATGGGTAGTTCAA+GGG | 0.512364 | 1.3:+51394300 | MS.gene036194:CDS |
GCAGTTGGAACTGTGGCAGT+TGG | 0.515482 | 1.3:+51394328 | MS.gene036194:CDS |
ATTTGTCAATCTTCCAGAGA+TGG | 0.520606 | 1.3:-51400760 | None:intergenic |
TCAACGTTCATTCCTGAACA+TGG | 0.525910 | 1.3:-51393084 | None:intergenic |
TGTTGGCATTATAGCTCTTG+CGG | 0.529365 | 1.3:+51397353 | MS.gene036194:CDS |
GAGGTGGGAAAGCGCTGTGT+TGG | 0.531070 | 1.3:+51395728 | MS.gene036194:CDS |
TCCAAGAATTGGAGGAAGGT+TGG | 0.531977 | 1.3:-51393379 | None:intergenic |
TGTCACATGCAGCCATAGTA+GGG | 0.533525 | 1.3:+51395297 | MS.gene036194:CDS |
CCGTTAATTTATGCAATGAT+GGG | 0.538397 | 1.3:+51394289 | MS.gene036194:CDS |
TGCAATTGACATCACAATGT+TGG | 0.540759 | 1.3:-51400624 | None:intergenic |
AAGAACTGAAAAGTGTAGCT+TGG | 0.541491 | 1.3:-51393282 | None:intergenic |
GGTGTCAGCAATGACGCCGT+TGG | 0.542147 | 1.3:+51396302 | MS.gene036194:CDS |
GGTTACTACTATTTGTTGCA+AGG | 0.547106 | 1.3:+51400959 | MS.gene036194:CDS |
TCACATAGTCCAAGAATTGG+AGG | 0.548928 | 1.3:-51393387 | None:intergenic |
AAGATAGAATTAAAGATACA+GGG | 0.552675 | 1.3:+51401261 | MS.gene036194:CDS |
TCGGCCGTGAACTATAATGC+TGG | 0.554904 | 1.3:+51400584 | MS.gene036194:CDS |
AAAGAGATGAATCAGAGGGT+TGG | 0.561882 | 1.3:+51401739 | MS.gene036194:CDS |
ATTAACCTCATTGGCCAACA+TGG | 0.564213 | 1.3:-51394368 | None:intergenic |
GCAGCCATAGTAGGGTTCAT+GGG | 0.565129 | 1.3:+51395305 | MS.gene036194:CDS |
ACCAAATCTGTGAGTGATGG+TGG | 0.568879 | 1.3:-51397285 | None:intergenic |
TCTTTCCAGATGATCCATTG+AGG | 0.569076 | 1.3:+51393184 | MS.gene036194:CDS |
GTTGGAAATATTGATACAAG+TGG | 0.570042 | 1.3:+51401412 | MS.gene036194:CDS |
CCGTTGGCGTCAGTTATACT+GGG | 0.574915 | 1.3:+51396318 | MS.gene036194:CDS |
CTCAAGGTGGATCGATGAAG+AGG | 0.580742 | 1.3:+51401238 | MS.gene036194:CDS |
AGATAGAATTAAAGATACAG+GGG | 0.583659 | 1.3:+51401262 | MS.gene036194:CDS |
TTATTGTTCATAGGATCTCA+AGG | 0.585365 | 1.3:+51401222 | MS.gene036194:intron |
CGGATACGATATCAGCAGCA+TGG | 0.585791 | 1.3:-51395391 | None:intergenic |
GGATACGATATCAGCAGCAT+GGG | 0.586482 | 1.3:-51395390 | None:intergenic |
GCTAGCTTGGCTATTCCTCA+AGG | 0.586902 | 1.3:+51393336 | MS.gene036194:CDS |
GTCAATCTTCCAGAGATGGA+TGG | 0.590877 | 1.3:-51400756 | None:intergenic |
GGGTTCCATGTTGGCCAATG+AGG | 0.591059 | 1.3:+51394363 | MS.gene036194:CDS |
GTTCTATTACACTCCTCTGG+TGG | 0.592713 | 1.3:+51400679 | MS.gene036194:CDS |
TTCCAGATGATCCATTGAGG+AGG | 0.598956 | 1.3:+51393187 | MS.gene036194:CDS |
TTTCAGGAAGGAATAGCTGT+GGG | 0.600243 | 1.3:+51398767 | MS.gene036194:intron |
CGAGCACCACGGTGTTCAAG+TGG | 0.600656 | 1.3:+51396368 | MS.gene036194:CDS |
TTCGATGTTTACCAGTTGTG+AGG | 0.602920 | 1.3:-51398889 | None:intergenic |
AGAATGTAGCTGTGAAAGCA+AGG | 0.605756 | 1.3:-51394420 | None:intergenic |
GGATTTGGCAGTTGGAACTG+TGG | 0.605836 | 1.3:+51394321 | MS.gene036194:CDS |
TCCAGCTTCCAAAAGGATGT+AGG | 0.611724 | 1.3:+51401645 | MS.gene036194:CDS |
TCCCAAAAGAGATGAATCAG+AGG | 0.611733 | 1.3:+51401734 | MS.gene036194:CDS |
ACCAGTTGTGAGGTAGCAAG+AGG | 0.613006 | 1.3:-51398879 | None:intergenic |
ATGCAAGCTATTTAAGAGAG+AGG | 0.614022 | 1.3:+51401109 | MS.gene036194:CDS |
GTGCAGGTTAGGGTTTATCG+TGG | 0.617383 | 1.3:+51395268 | MS.gene036194:intron |
AGCTTCCAAAAGGATGTAGG+AGG | 0.626533 | 1.3:+51401648 | MS.gene036194:CDS |
CATGGGAGGAGCAGCTACAG+TGG | 0.630489 | 1.3:+51395322 | MS.gene036194:CDS |
CCCAAAAGAGATGAATCAGA+GGG | 0.633313 | 1.3:+51401735 | MS.gene036194:CDS |
TTGGCATAGCTAATGCCTTG+AGG | 0.644841 | 1.3:-51393351 | None:intergenic |
ATAGTCCAAGAATTGGAGGA+AGG | 0.645921 | 1.3:-51393383 | None:intergenic |
CCCAGTATAACTGACGCCAA+CGG | 0.646136 | 1.3:-51396318 | None:intergenic |
AACGTTGATGAGAGTGTGCA+TGG | 0.652394 | 1.3:+51393099 | MS.gene036194:CDS |
TTTGGTCAATCCTGGAAGTG+AGG | 0.652558 | 1.3:+51401602 | MS.gene036194:CDS |
TTGGTGCCCATTCAAATATG+GGG | 0.657181 | 1.3:-51393263 | None:intergenic |
CAACGTTCATTCCTGAACAT+GGG | 0.662994 | 1.3:-51393083 | None:intergenic |
TTCACTCACGCCGAGCACCA+CGG | 0.668149 | 1.3:+51396357 | MS.gene036194:CDS |
AGAGGAGTGTAATAGAACAA+AGG | 0.670114 | 1.3:-51400674 | None:intergenic |
AATACCAAATCTGTGAGTGA+TGG | 0.675598 | 1.3:-51397288 | None:intergenic |
TTACGAAGTATCTTGTAACA+AGG | 0.677468 | 1.3:-51395773 | None:intergenic |
ATCATTGCATAAATTAACGG+TGG | 0.681126 | 1.3:-51394286 | None:intergenic |
GCTGACACCCAAAAGAACCT+CGG | 0.684039 | 1.3:-51396288 | None:intergenic |
GCCATAGTAGGGTTCATGGG+AGG | 0.684143 | 1.3:+51395308 | MS.gene036194:CDS |
TGATGAGAGTGTGCATGGTG+TGG | 0.685946 | 1.3:+51393104 | MS.gene036194:CDS |
TATGTTATACTGGATATGAG+TGG | 0.705748 | 1.3:+51401299 | MS.gene036194:CDS |
AAATTGGATCTATCTGACAG+TGG | 0.706142 | 1.3:+51401671 | MS.gene036194:CDS |
ATGGCTGCTAGTACCACCAG+AGG | 0.717575 | 1.3:-51400692 | None:intergenic |
ATGTAGCTGTGAAAGCAAGG+TGG | 0.720087 | 1.3:-51394417 | None:intergenic |
TGCAGAGCAAGAAACAACCG+AGG | 0.739760 | 1.3:+51396271 | MS.gene036194:intron |
TTGTTCATAGGATCTCAAGG+TGG | 0.742236 | 1.3:+51401225 | MS.gene036194:intron |
TGCTCACCACTTGAACACCG+TGG | 0.755603 | 1.3:-51396374 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 51393057 | 51401773 | 51393057 | ID=MS.gene036194 |
chr1.3 | mRNA | 51393057 | 51401773 | 51393057 | ID=MS.gene036194.t1;Parent=MS.gene036194 |
chr1.3 | exon | 51393057 | 51393405 | 51393057 | ID=MS.gene036194.t1.exon1;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51393057 | 51393405 | 51393057 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51394272 | 51394479 | 51394272 | ID=MS.gene036194.t1.exon2;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51394272 | 51394479 | 51394272 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51395274 | 51395445 | 51395274 | ID=MS.gene036194.t1.exon3;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51395274 | 51395445 | 51395274 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51395726 | 51395791 | 51395726 | ID=MS.gene036194.t1.exon4;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51395726 | 51395791 | 51395726 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51396276 | 51396389 | 51396276 | ID=MS.gene036194.t1.exon5;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51396276 | 51396389 | 51396276 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51397258 | 51397374 | 51397258 | ID=MS.gene036194.t1.exon6;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51397258 | 51397374 | 51397258 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51398773 | 51398899 | 51398773 | ID=MS.gene036194.t1.exon7;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51398773 | 51398899 | 51398773 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51400570 | 51400856 | 51400570 | ID=MS.gene036194.t1.exon8;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51400570 | 51400856 | 51400570 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51400940 | 51401130 | 51400940 | ID=MS.gene036194.t1.exon9;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51400940 | 51401130 | 51400940 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51401235 | 51401320 | 51401235 | ID=MS.gene036194.t1.exon10;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51401235 | 51401320 | 51401235 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51401410 | 51401486 | 51401410 | ID=MS.gene036194.t1.exon11;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51401410 | 51401486 | 51401410 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
chr1.3 | exon | 51401597 | 51401773 | 51401597 | ID=MS.gene036194.t1.exon12;Parent=MS.gene036194.t1 |
chr1.3 | CDS | 51401597 | 51401773 | 51401597 | ID=cds.MS.gene036194.t1;Parent=MS.gene036194.t1 |
Gene Sequence |
Protein sequence |