Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04101.t1 | XP_003600461.1 | 99.4 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 2.30E-185 | 657.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04101.t1 | Q9FKT5 | 85.0 | 313 | 46 | 1 | 2 | 313 | 3 | 315 | 7.7e-161 | 567.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04101.t1 | G7IY98 | 99.4 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 1.7e-185 | 657.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04101 | MS.gene93058 | PPI |
| MS.gene04101 | MS.gene008794 | PPI |
| MS.gene04101 | MS.gene014281 | PPI |
| MS.gene04101 | MS.gene93059 | PPI |
| MS.gene04101 | MS.gene066026 | PPI |
| MS.gene04101 | MS.gene012608 | PPI |
| MS.gene04101 | MS.gene056487 | PPI |
| MS.gene04101 | MS.gene004825 | PPI |
| MS.gene04101 | MS.gene71431 | PPI |
| MS.gene056488 | MS.gene04101 | PPI |
| MS.gene95244 | MS.gene04101 | PPI |
| MS.gene04101 | MS.gene042253 | PPI |
| MS.gene04101 | MS.gene68222 | PPI |
| MS.gene97981 | MS.gene04101 | PPI |
| MS.gene04101 | MS.gene046235 | PPI |
| MS.gene04101 | MS.gene97980 | PPI |
| MS.gene33535 | MS.gene04101 | PPI |
| MS.gene04101 | MS.gene52980 | PPI |
| MS.gene04101 | MS.gene008793 | PPI |
| MS.gene064894 | MS.gene04101 | PPI |
| MS.gene04101 | MS.gene063165 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04101.t1 | MTR_3g061450 | 99.361 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 0.0 | 655 |
| MS.gene04101.t1 | MTR_4g095058 | 27.835 | 291 | 191 | 8 | 11 | 289 | 280 | 563 | 1.57e-20 | 92.4 |
| MS.gene04101.t1 | MTR_4g095058 | 28.962 | 183 | 109 | 5 | 8 | 177 | 402 | 576 | 1.32e-14 | 74.7 |
| MS.gene04101.t1 | MTR_4g095058 | 27.835 | 291 | 191 | 8 | 11 | 289 | 278 | 561 | 1.58e-20 | 92.4 |
| MS.gene04101.t1 | MTR_4g095058 | 28.962 | 183 | 109 | 5 | 8 | 177 | 400 | 574 | 1.24e-14 | 74.7 |
| MS.gene04101.t1 | MTR_5g016350 | 24.625 | 333 | 204 | 9 | 17 | 307 | 231 | 558 | 1.36e-16 | 80.5 |
| MS.gene04101.t1 | MTR_5g016350 | 29.775 | 178 | 104 | 5 | 13 | 177 | 412 | 581 | 2.82e-15 | 76.6 |
| MS.gene04101.t1 | MTR_5g016350 | 25.177 | 282 | 152 | 10 | 20 | 249 | 295 | 569 | 6.80e-13 | 69.3 |
| MS.gene04101.t1 | MTR_5g016350 | 24.625 | 333 | 204 | 9 | 17 | 307 | 167 | 494 | 1.38e-16 | 80.5 |
| MS.gene04101.t1 | MTR_5g016350 | 29.775 | 178 | 104 | 5 | 13 | 177 | 348 | 517 | 4.04e-15 | 76.3 |
| MS.gene04101.t1 | MTR_5g016350 | 25.177 | 282 | 152 | 10 | 20 | 249 | 231 | 505 | 6.71e-13 | 69.3 |
| MS.gene04101.t1 | MTR_5g016370 | 24.625 | 333 | 202 | 11 | 17 | 307 | 245 | 570 | 8.22e-16 | 78.2 |
| MS.gene04101.t1 | MTR_5g016370 | 28.409 | 176 | 109 | 4 | 13 | 177 | 424 | 593 | 9.18e-16 | 78.2 |
| MS.gene04101.t1 | MTR_4g125710 | 24.254 | 268 | 177 | 6 | 13 | 258 | 54 | 317 | 1.51e-15 | 76.3 |
| MS.gene04101.t1 | MTR_3g106080 | 25.882 | 255 | 124 | 6 | 15 | 251 | 457 | 664 | 1.70e-15 | 77.4 |
| MS.gene04101.t1 | MTR_1g072140 | 23.051 | 295 | 213 | 8 | 11 | 297 | 19 | 307 | 5.31e-15 | 74.7 |
| MS.gene04101.t1 | MTR_1g097140 | 26.154 | 260 | 180 | 7 | 12 | 267 | 116 | 367 | 6.06e-15 | 75.1 |
| MS.gene04101.t1 | MTR_4g119620 | 24.797 | 246 | 172 | 6 | 13 | 251 | 72 | 311 | 2.27e-14 | 72.8 |
| MS.gene04101.t1 | MTR_3g449990 | 25.000 | 288 | 202 | 9 | 17 | 295 | 268 | 550 | 5.66e-14 | 72.8 |
| MS.gene04101.t1 | MTR_5g090420 | 24.390 | 287 | 202 | 9 | 18 | 295 | 263 | 543 | 2.20e-13 | 70.9 |
| MS.gene04101.t1 | MTR_7g086360 | 21.141 | 298 | 218 | 7 | 16 | 301 | 52 | 344 | 3.89e-13 | 69.3 |
| MS.gene04101.t1 | MTR_6g004040 | 27.160 | 243 | 158 | 8 | 13 | 244 | 5 | 239 | 2.20e-12 | 68.2 |
| MS.gene04101.t1 | MTR_3g116500 | 25.112 | 223 | 152 | 5 | 12 | 219 | 39 | 261 | 7.74e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04101.t1 | AT5G56130 | 85.079 | 315 | 45 | 2 | 1 | 313 | 1 | 315 | 0.0 | 566 |
| MS.gene04101.t1 | AT5G67320 | 28.669 | 293 | 186 | 11 | 11 | 289 | 315 | 598 | 2.53e-21 | 94.7 |
| MS.gene04101.t1 | AT5G67320 | 29.714 | 175 | 110 | 4 | 12 | 177 | 441 | 611 | 8.93e-15 | 75.1 |
| MS.gene04101.t1 | AT2G43770 | 23.390 | 295 | 209 | 8 | 16 | 298 | 50 | 339 | 7.19e-16 | 77.4 |
| MS.gene04101.t1 | AT5G25150 | 25.292 | 257 | 123 | 7 | 15 | 251 | 456 | 663 | 1.55e-14 | 74.7 |
| MS.gene04101.t1 | AT5G08560 | 25.260 | 289 | 196 | 9 | 31 | 311 | 286 | 562 | 2.19e-14 | 73.9 |
| MS.gene04101.t1 | AT5G08560 | 25.260 | 289 | 196 | 9 | 31 | 311 | 286 | 562 | 2.19e-14 | 73.9 |
| MS.gene04101.t1 | AT5G08560 | 25.260 | 289 | 196 | 9 | 31 | 311 | 286 | 562 | 2.19e-14 | 73.9 |
| MS.gene04101.t1 | AT4G02730 | 27.358 | 212 | 140 | 8 | 14 | 217 | 80 | 285 | 1.61e-13 | 70.5 |
| MS.gene04101.t1 | AT3G49660 | 23.920 | 301 | 206 | 10 | 10 | 295 | 15 | 307 | 1.73e-13 | 70.5 |
| MS.gene04101.t1 | AT3G49660 | 23.715 | 253 | 180 | 6 | 13 | 258 | 65 | 311 | 2.96e-13 | 69.7 |
| MS.gene04101.t1 | AT3G49660 | 26.442 | 208 | 140 | 6 | 17 | 217 | 111 | 312 | 5.31e-11 | 63.2 |
| MS.gene04101.t1 | AT5G25150 | 27.143 | 210 | 100 | 6 | 15 | 220 | 456 | 616 | 2.27e-13 | 70.9 |
Find 79 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAAGTACATTGTATTT+AGG | 0.212077 | 3.2:+52847258 | None:intergenic |
| TTGATCAAACTGCTCGAATT+TGG | 0.221602 | 3.2:-52853793 | MS.gene04101:CDS |
| CTCATGTAGCTGTCGGTAAT+AGG | 0.263264 | 3.2:-52852575 | MS.gene04101:CDS |
| TGCAATAAGATCGGGATGTT+TGG | 0.289165 | 3.2:+52852860 | None:intergenic |
| GCAATAAGATCGGGATGTTT+GGG | 0.297004 | 3.2:+52852861 | None:intergenic |
| GTGACAAGACTGTTCGTCTA+TGG | 0.297252 | 3.2:-52852827 | MS.gene04101:CDS |
| CGATCTTATTGCAACTGCTT+CGG | 0.300112 | 3.2:-52852850 | MS.gene04101:CDS |
| ACAATTAGTTTCAACCATAC+TGG | 0.312869 | 3.2:-52847861 | MS.gene04101:CDS |
| TGTCAGCTTGTGGGTTATTT+CGG | 0.319330 | 3.2:-52848040 | MS.gene04101:CDS |
| GATCTTATTGCAACTGCTTC+GGG | 0.329060 | 3.2:-52852849 | MS.gene04101:CDS |
| TTCTTTCTAACAACAGGAAA+TGG | 0.391405 | 3.2:-52848469 | MS.gene04101:intron |
| CTGATTCCCTTGTCAGCTTG+TGG | 0.395348 | 3.2:-52848050 | MS.gene04101:CDS |
| AAGTACATCATATTCCTTGT+AGG | 0.397863 | 3.2:-52847308 | MS.gene04101:CDS |
| TGATTCCCTTGTCAGCTTGT+GGG | 0.409663 | 3.2:-52848049 | MS.gene04101:CDS |
| TGCATTGCAATTGACCCAAC+AGG | 0.430132 | 3.2:-52848250 | MS.gene04101:CDS |
| AATTAACAATACTTGATGTT+CGG | 0.434738 | 3.2:-52852326 | MS.gene04101:CDS |
| AAAAGGTGCATTCAGTGGCT+TGG | 0.441542 | 3.2:-52853850 | MS.gene04101:intron |
| CAATTAGTTTCAACCATACT+GGG | 0.443807 | 3.2:-52847860 | MS.gene04101:CDS |
| CCTAGGTAAATGAGATTGCT+TGG | 0.445389 | 3.2:-52848510 | MS.gene04101:intron |
| GGTCAAAGATATTGAATTGA+AGG | 0.446383 | 3.2:-52852919 | MS.gene04101:CDS |
| CACAACAGGCAGAACTTAGC+GGG | 0.449505 | 3.2:-52852632 | MS.gene04101:CDS |
| ATTCCACTCAACACTATTCA+TGG | 0.456424 | 3.2:+52847281 | None:intergenic |
| GAGATGTTCTTTCTAACAAC+AGG | 0.457171 | 3.2:-52848475 | MS.gene04101:CDS |
| ATTGGCACAAAACTTGCTTC+TGG | 0.457664 | 3.2:-52853821 | MS.gene04101:CDS |
| ATGAGTACCATCAGGTTTGT+AGG | 0.460015 | 3.2:+52852593 | None:intergenic |
| TGAGACAGACATTTCGCTGT+TGG | 0.470477 | 3.2:-52848078 | MS.gene04101:intron |
| TACAATGTACTTGCATATGC+TGG | 0.472545 | 3.2:-52847252 | MS.gene04101:CDS |
| AAGCAATCAAGTCCCCAGTA+TGG | 0.482571 | 3.2:+52847847 | None:intergenic |
| TGTTTCTCAGATGGCCTGTC+CGG | 0.488476 | 3.2:-52847884 | MS.gene04101:intron |
| CTTCACAGCAGAGAGTATTC+CGG | 0.490791 | 3.2:-52854028 | MS.gene04101:CDS |
| TCATGTAGCTGTCGGTAATA+GGG | 0.491901 | 3.2:-52852574 | MS.gene04101:intron |
| AGGTGGAAAATGCTCACAAC+AGG | 0.493748 | 3.2:-52852646 | MS.gene04101:CDS |
| TATGGTTGAAACTAATTGTC+CGG | 0.499723 | 3.2:+52847865 | None:intergenic |
| CTATTCATGGCAGCCCTACA+AGG | 0.501447 | 3.2:+52847294 | None:intergenic |
| CGAAGCAGTTGCAATAAGAT+CGG | 0.502914 | 3.2:+52852851 | None:intergenic |
| AGAAGCATTACCTTCCTGTT+GGG | 0.503474 | 3.2:+52848236 | None:intergenic |
| GTATCAAGAGGTCGAAGAGA+TGG | 0.505442 | 3.2:+52848301 | None:intergenic |
| TTGAACTTGCGCCTATGCAT+TGG | 0.510346 | 3.2:+52852294 | None:intergenic |
| GTGACAGTCCAATGTTCATA+CGG | 0.510916 | 3.2:-52847337 | MS.gene04101:intron |
| TAGTGTGGATCAGCTATGTT+GGG | 0.512894 | 3.2:-52852886 | MS.gene04101:CDS |
| TGACAAGACTGTTCGTCTAT+GGG | 0.513043 | 3.2:-52852826 | MS.gene04101:CDS |
| AACTTACTCGAGCTTTGTAA+AGG | 0.513452 | 3.2:+52847999 | None:intergenic |
| AGTACATCATATTCCTTGTA+GGG | 0.519543 | 3.2:-52847307 | MS.gene04101:CDS |
| TCAGTGGCTTGGAATTGCAT+TGG | 0.521845 | 3.2:-52853839 | MS.gene04101:CDS |
| AAATGAGAATTGTTCCTCCA+TGG | 0.522481 | 3.2:+52854057 | None:intergenic |
| AAGAAGCATTACCTTCCTGT+TGG | 0.526316 | 3.2:+52848235 | None:intergenic |
| GGGTACCTTCTTCTTGTGAC+CGG | 0.527746 | 3.2:+52854009 | None:intergenic |
| GAAGCAGTTGCAATAAGATC+GGG | 0.535149 | 3.2:+52852852 | None:intergenic |
| TGACAGTCCAATGTTCATAC+GGG | 0.537123 | 3.2:-52847336 | MS.gene04101:intron |
| AAGGTTACTACATGGGCATG+TGG | 0.551642 | 3.2:+52853761 | None:intergenic |
| GTCAAAGATATTGAATTGAA+GGG | 0.552936 | 3.2:-52852918 | MS.gene04101:CDS |
| ACTCTCATGGCTCATACAGC+AGG | 0.557112 | 3.2:-52848280 | MS.gene04101:CDS |
| ATAGTGTGGATCAGCTATGT+TGG | 0.561550 | 3.2:-52852887 | MS.gene04101:CDS |
| AAATAACCCACAAGCTGACA+AGG | 0.562424 | 3.2:+52848043 | None:intergenic |
| TCGACCTCTTGATACTCTCA+TGG | 0.565472 | 3.2:-52848293 | MS.gene04101:CDS |
| GGAAATTCAAACCAATGCAT+AGG | 0.586683 | 3.2:-52852305 | MS.gene04101:CDS |
| TTGAAACTAATTGTCCGGAC+AGG | 0.589710 | 3.2:+52847870 | None:intergenic |
| ACAGCTACATGAGTACCATC+AGG | 0.590433 | 3.2:+52852585 | None:intergenic |
| GTATTCCGGTCACAAGAAGA+AGG | 0.599493 | 3.2:-52854014 | MS.gene04101:intron |
| TAGGCGCAAGTTCAACTATG+AGG | 0.599831 | 3.2:-52852286 | MS.gene04101:intron |
| TTTCGGAAATGCTTTGTGTG+CGG | 0.599990 | 3.2:-52848023 | MS.gene04101:CDS |
| GAGATTGCTTGGAACATGAC+TGG | 0.603670 | 3.2:-52848499 | MS.gene04101:CDS |
| GAAGGGTCACACCGATAGTG+TGG | 0.604201 | 3.2:-52852901 | MS.gene04101:CDS |
| AACATCACCTACAAACCTGA+TGG | 0.607731 | 3.2:-52852600 | MS.gene04101:CDS |
| TCACAACAGGCAGAACTTAG+CGG | 0.608481 | 3.2:-52852633 | MS.gene04101:CDS |
| AGGTTACTACATGGGCATGT+GGG | 0.610892 | 3.2:+52853762 | None:intergenic |
| CAATAAGATCGGGATGTTTG+GGG | 0.614895 | 3.2:+52852862 | None:intergenic |
| ACATAGCTGATCCACACTAT+CGG | 0.628331 | 3.2:+52852890 | None:intergenic |
| AACAAGTATCAGGCTGACGA+AGG | 0.633197 | 3.2:-52847219 | MS.gene04101:intron |
| GATGGTACTCATGTAGCTGT+CGG | 0.638089 | 3.2:-52852582 | MS.gene04101:CDS |
| GTTTGAAAAGGTGCATTCAG+TGG | 0.648774 | 3.2:-52853855 | MS.gene04101:intron |
| CTGCCATGAATAGTGTTGAG+TGG | 0.656405 | 3.2:-52847284 | MS.gene04101:CDS |
| TTGCAATTGACCCAACAGGA+AGG | 0.660962 | 3.2:-52848246 | MS.gene04101:intron |
| GCTCACGTACTCAGGGACTG+TGG | 0.668767 | 3.2:-52848338 | MS.gene04101:intron |
| AATAACCCACAAGCTGACAA+GGG | 0.681570 | 3.2:+52848044 | None:intergenic |
| TGAGCCATGAGAGTATCAAG+AGG | 0.696186 | 3.2:+52848289 | None:intergenic |
| GACAGTCCAATGTTCATACG+GGG | 0.704919 | 3.2:-52847335 | MS.gene04101:intron |
| ACAACAGGCAGAACTTAGCG+GGG | 0.708836 | 3.2:-52852631 | MS.gene04101:CDS |
| AATTAGTTTCAACCATACTG+GGG | 0.712478 | 3.2:-52847859 | MS.gene04101:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 52847100 | 52854077 | 52847100 | ID=MS.gene04101 |
| chr3.2 | mRNA | 52847100 | 52854077 | 52847100 | ID=MS.gene04101.t1;Parent=MS.gene04101 |
| chr3.2 | exon | 52854015 | 52854077 | 52854015 | ID=MS.gene04101.t1.exon1;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52854015 | 52854077 | 52854015 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52853772 | 52853867 | 52853772 | ID=MS.gene04101.t1.exon2;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52853772 | 52853867 | 52853772 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52852817 | 52852946 | 52852817 | ID=MS.gene04101.t1.exon3;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52852817 | 52852946 | 52852817 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52852575 | 52852666 | 52852575 | ID=MS.gene04101.t1.exon4;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52852575 | 52852666 | 52852575 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52852287 | 52852355 | 52852287 | ID=MS.gene04101.t1.exon5;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52852287 | 52852355 | 52852287 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52848470 | 52848527 | 52848470 | ID=MS.gene04101.t1.exon6;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52848470 | 52848527 | 52848470 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52848247 | 52848346 | 52848247 | ID=MS.gene04101.t1.exon7;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52848247 | 52848346 | 52848247 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52848006 | 52848092 | 52848006 | ID=MS.gene04101.t1.exon8;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52848006 | 52848092 | 52848006 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52847818 | 52847896 | 52847818 | ID=MS.gene04101.t1.exon9;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52847818 | 52847896 | 52847818 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52847220 | 52847352 | 52847220 | ID=MS.gene04101.t1.exon10;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52847220 | 52847352 | 52847220 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| chr3.2 | exon | 52847100 | 52847134 | 52847100 | ID=MS.gene04101.t1.exon11;Parent=MS.gene04101.t1 |
| chr3.2 | CDS | 52847100 | 52847134 | 52847100 | ID=cds.MS.gene04101.t1;Parent=MS.gene04101.t1 |
| Gene Sequence |
| Protein sequence |