AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008794


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008794.t1 MTR_8g070095 97.806 319 7 0 1 319 1 319 0.0 644
MS.gene008794.t1 MTR_8g070115 82.555 321 48 3 1 319 1 315 0.0 532
MS.gene008794.t1 MTR_4g021350 71.787 319 84 3 1 319 1 313 1.42e-160 451
MS.gene008794.t1 MTR_4g021350 72.852 291 73 3 1 291 1 285 8.20e-145 409
MS.gene008794.t1 MTR_4g021450 64.669 317 97 3 2 318 3 304 2.36e-140 399
MS.gene008794.t1 MTR_4g021410 64.669 317 97 3 2 318 3 304 2.67e-140 399
MS.gene008794.t1 MTR_7g063580 63.291 316 107 4 6 319 46 354 5.68e-136 390
MS.gene008794.t1 MTR_4g021410 65.108 278 84 2 41 318 3 267 3.46e-123 354
MS.gene008794.t1 MTR_4g021410 63.900 241 74 2 78 318 1 228 1.51e-100 295
MS.gene008794.t1 MTR_4g021450 63.071 241 76 2 78 318 1 228 3.61e-99 291
MS.gene008794.t1 MTR_4g072320 46.965 313 155 5 10 319 11 315 1.74e-91 275
MS.gene008794.t1 MTR_4g072350 46.645 313 160 5 10 318 11 320 6.61e-88 266
MS.gene008794.t1 MTR_4g072360 45.048 313 165 5 10 318 11 320 5.20e-86 261
MS.gene008794.t1 MTR_4g036845 41.667 312 176 3 10 319 8 315 1.95e-85 259
MS.gene008794.t1 MTR_4g021450 64.516 186 64 1 133 318 2 185 1.77e-84 253
MS.gene008794.t1 MTR_7g070500 44.904 314 162 7 8 318 15 320 8.16e-80 246
MS.gene008794.t1 MTR_6g073110 40.439 319 183 5 2 316 3 318 3.08e-79 244
MS.gene008794.t1 MTR_0374s0050 39.806 309 171 5 14 318 18 315 4.45e-75 233
MS.gene008794.t1 MTR_3g083130 40.196 306 171 4 15 318 20 315 1.50e-71 224
MS.gene008794.t1 MTR_7g070500 45.230 283 146 5 8 289 15 289 6.23e-71 222
MS.gene008794.t1 MTR_4g072060 41.096 292 158 5 10 291 5 292 5.95e-68 215
MS.gene008794.t1 MTR_5g097910 42.606 284 160 2 15 297 19 300 5.66e-66 210
MS.gene008794.t1 MTR_5g097900 42.606 284 160 2 15 297 19 300 5.66e-66 210
MS.gene008794.t1 MTR_5g097940 42.606 284 160 2 15 297 19 300 5.66e-66 210
MS.gene008794.t1 MTR_6g072650 40.667 150 64 3 171 318 10 136 5.78e-31 114
MS.gene008794.t1 MTR_6g072710 40.708 113 65 1 189 299 1 113 4.55e-24 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008794.t1 AT2G37770 75.389 321 71 3 1 319 1 315 3.64e-177 493
MS.gene008794.t1 AT2G37790 73.520 321 76 4 1 319 1 314 8.88e-171 476
MS.gene008794.t1 AT3G53880 68.224 321 94 4 1 319 1 315 7.59e-153 431
MS.gene008794.t1 AT2G37760 65.109 321 100 3 1 319 1 311 7.02e-150 423
MS.gene008794.t1 AT2G37760 65.109 321 100 3 1 319 1 311 7.02e-150 423
MS.gene008794.t1 AT2G37760 66.330 297 88 3 1 295 1 287 3.42e-139 395
MS.gene008794.t1 AT2G37760 66.330 297 88 3 1 295 1 287 3.42e-139 395
MS.gene008794.t1 AT2G37760 66.780 295 86 3 1 293 1 285 4.31e-139 395
MS.gene008794.t1 AT3G53880 68.027 294 86 4 1 292 1 288 3.61e-137 391
MS.gene008794.t1 AT2G37760 66.288 264 83 2 58 319 6 265 6.81e-123 353
MS.gene008794.t1 AT2G37760 66.288 264 83 2 58 319 6 265 6.81e-123 353
MS.gene008794.t1 AT2G37770 73.810 210 49 2 1 210 1 204 1.42e-108 317
MS.gene008794.t1 AT5G01670 45.455 319 163 7 3 318 11 321 8.87e-91 274
MS.gene008794.t1 AT5G62420 43.492 315 167 5 10 319 8 316 8.84e-86 261
MS.gene008794.t1 AT5G01670 41.908 346 163 8 3 318 11 348 5.49e-85 260
MS.gene008794.t1 AT2G21250 40.753 292 159 5 10 291 5 292 1.57e-74 232
MS.gene008794.t1 AT2G21260 39.384 292 163 5 10 291 5 292 8.53e-73 227
MS.gene008794.t1 AT1G59960 39.677 310 177 8 16 319 21 326 4.54e-70 221
MS.gene008794.t1 AT1G59950 40.968 310 173 8 16 319 15 320 1.30e-66 212
MS.gene008794.t1 AT2G21250 40.948 232 123 5 10 231 5 232 3.20e-56 182
MS.gene008794.t1 AT2G21260 36.073 219 128 4 83 291 8 224 1.18e-45 155
MS.gene008794.t1 AT1G06690 25.519 337 172 16 15 299 57 366 1.38e-14 74.3
MS.gene008794.t1 AT5G53580 22.747 233 136 7 97 300 145 362 7.79e-11 62.8

Find 95 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATTGTGCTCAATTATA+TGG 0.246265 8.1:+34447052 MS.gene008794:CDS
TGTTTAGGGTTATTCACCTT+TGG 0.283109 8.1:+34448901 MS.gene008794:intron
GTTTAGGGTTATTCACCTTT+GGG 0.309851 8.1:+34448902 MS.gene008794:intron
CTTCCGTCGGCTTGGGAACT+TGG 0.318119 8.1:+34446874 MS.gene008794:CDS
AAGTTGAATGCCATCCTTCC+TGG 0.331904 8.1:+34448703 MS.gene008794:CDS
TGCTCAGGTAGCTCTTCGTT+GGG 0.340720 8.1:+34449003 MS.gene008794:CDS
CATTTAGAATTGGATGCTTA+AGG 0.343408 8.1:-34448952 None:intergenic
CAGATCTCTTGAAGAACTTT+GGG 0.345354 8.1:+34449445 MS.gene008794:CDS
GCCGTGAATTCGGCGCCTAT+TGG 0.350788 8.1:-34448519 None:intergenic
AATGCTAGTGGTACATCTTC+TGG 0.366434 8.1:-34447356 None:intergenic
ACAGATCTCTTGAAGAACTT+TGG 0.367507 8.1:+34449444 MS.gene008794:CDS
TCAAACAAACCAGAGTTTAG+AGG 0.367679 8.1:-34447240 None:intergenic
GGTCCTTTCTTTATCGCAAC+TGG 0.368778 8.1:-34448498 None:intergenic
TCAGCAACCTCATTTAGAAT+TGG 0.373514 8.1:-34448962 None:intergenic
ATAATGAAAATTTACCTTGA+TGG 0.383153 8.1:-34446943 None:intergenic
TGGCAAGCCGAGGACGATCC+TGG 0.383508 8.1:+34446894 MS.gene008794:CDS
CTCTTGCTTGCAGATTGGCT+TGG 0.397628 8.1:+34447163 MS.gene008794:intron
CACCTTTGGGCTCCCCAACC+TGG 0.398492 8.1:+34448915 MS.gene008794:CDS
TCTTCGTTGGGGATTACAAA+TGG 0.402510 8.1:+34449015 MS.gene008794:CDS
TTCAGCCTTAGCCGTGAATT+CGG 0.403381 8.1:-34448529 None:intergenic
AATTTAGCAAACAAGTCTTC+AGG 0.406773 8.1:-34449112 None:intergenic
TAGTGAAGCGCGAAGATTTG+TGG 0.419049 8.1:+34447213 MS.gene008794:CDS
AAGATCCCTTCCGTCGGCTT+GGG 0.419341 8.1:+34446867 MS.gene008794:CDS
TTCCATTGCCTTCCATGTGC+TGG 0.421435 8.1:-34448574 None:intergenic
TACAGAGAAGTGGACACCTT+TGG 0.421647 8.1:-34448757 None:intergenic
CAATTTCTCTATCAAGAAGT+TGG 0.424383 8.1:+34448638 MS.gene008794:CDS
ATCGAAGAATTGAATTGCCT+TGG 0.425062 8.1:-34446829 None:intergenic
CAAGCCGACGGAAGGGATCT+TGG 0.426447 8.1:-34446865 None:intergenic
CATCAGTATGAAGCCAGGTT+GGG 0.428095 8.1:-34448928 None:intergenic
TTCCATGTGCTGGCTAAGTT+AGG 0.434208 8.1:-34448564 None:intergenic
TCTGGCAAGGCAAAGGCTAT+AGG 0.442354 8.1:+34448609 MS.gene008794:CDS
CTGCTCAGGTAGCTCTTCGT+TGG 0.446657 8.1:+34449002 MS.gene008794:CDS
ACCAATAGGCGCCGAATTCA+CGG 0.452350 8.1:+34448518 MS.gene008794:CDS
ACGGCTTCAGCAACGAGGCC+AGG 0.464853 8.1:-34446912 None:intergenic
CAAGATCCCTTCCGTCGGCT+TGG 0.468615 8.1:+34446866 MS.gene008794:CDS
AATTTCTCTATCAAGAAGTT+GGG 0.469634 8.1:+34448639 MS.gene008794:CDS
GCGATAAAGAAAGGACCAAT+AGG 0.481557 8.1:+34448504 MS.gene008794:CDS
AAGAGATCTGTAGGCACCAT+AGG 0.482007 8.1:-34449432 None:intergenic
TAAGCATCCAATTCTAAATG+AGG 0.488314 8.1:+34448955 MS.gene008794:CDS
CTTCGTTGGGGATTACAAAT+GGG 0.488873 8.1:+34449016 MS.gene008794:CDS
ACTAGCATTGGAAAAGACTT+TGG 0.490609 8.1:+34447370 MS.gene008794:CDS
GACGGAAGGGATCTTGGCTC+CGG 0.493320 8.1:-34446859 None:intergenic
CAACGAAGAGCTACCTGAGC+AGG 0.497875 8.1:-34449001 None:intergenic
ATGCCATCCTTCCTGGAGGC+AGG 0.504483 8.1:+34448710 MS.gene008794:CDS
AGAAGATGTACCACTAGCAT+TGG 0.505834 8.1:+34447358 MS.gene008794:CDS
TACCTTGATGGCGGTAGCAA+CGG 0.508389 8.1:-34446931 None:intergenic
GCGGAGTTTGTCCTGCCTCC+AGG 0.509330 8.1:-34448721 None:intergenic
AATGAGGTTGCTGAGAAACT+AGG 0.517463 8.1:+34448971 MS.gene008794:CDS
ACTAGGCAAGTCTCCTGCTC+AGG 0.519051 8.1:+34448988 MS.gene008794:CDS
ACATCAGTATGAAGCCAGGT+TGG 0.521356 8.1:-34448929 None:intergenic
ATCAGTATGAAGCCAGGTTG+GGG 0.529291 8.1:-34448927 None:intergenic
CGCGATTTCTGCAATTCCAA+AGG 0.530051 8.1:+34448741 MS.gene008794:CDS
ACAAATCAACGTAATCAAGC+TGG 0.534843 8.1:-34447400 None:intergenic
CATTCAACTTGATTGACAGC+AGG 0.544893 8.1:-34448690 None:intergenic
TGGCCAGTTGCGATAAAGAA+AGG 0.545205 8.1:+34448495 MS.gene008794:CDS
CAAGTTCCCAAGCCGACGGA+AGG 0.545920 8.1:-34446873 None:intergenic
AACGAGGCCAGGATCGTCCT+CGG 0.548937 8.1:-34446901 None:intergenic
TGTGGATTACCTCTAAACTC+TGG 0.549050 8.1:+34447231 MS.gene008794:CDS
TGTCCTGCCTCCAGGAAGGA+TGG 0.550318 8.1:-34448713 None:intergenic
ATGGAAGCATTGTATGACTC+TGG 0.552515 8.1:+34448591 MS.gene008794:CDS
TCTTTATCGCAACTGGCCAG+TGG 0.553959 8.1:-34448491 None:intergenic
TTGAAGAAGCTGTTCGATGA+GGG 0.555129 8.1:+34447188 MS.gene008794:CDS
GTTACAGGCAAGATTACTGA+AGG 0.557541 8.1:+34449388 MS.gene008794:intron
ATATTTGTTCATGAAACCTA+TGG 0.561345 8.1:+34449416 MS.gene008794:CDS
CTTGGAAACTTACAGAGAAG+TGG 0.563953 8.1:-34448767 None:intergenic
AGGCGCCGAATTCACGGCTA+AGG 0.570557 8.1:+34448524 MS.gene008794:CDS
AAGTTCTTCAAGAGATCTGT+AGG 0.572206 8.1:-34449441 None:intergenic
GTATGACTCTGGCAAGGCAA+AGG 0.576342 8.1:+34448602 MS.gene008794:CDS
AGCCGTTGCTACCGCCATCA+AGG 0.579549 8.1:+34446929 MS.gene008794:CDS
CTTGGGAACTTGGCAAGCCG+AGG 0.587905 8.1:+34446884 MS.gene008794:CDS
AAGGACATCAGTATGAAGCC+AGG 0.592213 8.1:-34448933 None:intergenic
TCTCTTGAAGAACTTTGGGA+TGG 0.592262 8.1:+34449449 MS.gene008794:CDS
TAACTTAGCCAGCACATGGA+AGG 0.594297 8.1:+34448566 MS.gene008794:CDS
CAATTCTTCGATCTCAACAC+CGG 0.596191 8.1:+34446840 MS.gene008794:CDS
TCAACTTGATTGACAGCAGG+AGG 0.597384 8.1:-34448687 None:intergenic
AAGTTCCCAAGCCGACGGAA+GGG 0.599376 8.1:-34446872 None:intergenic
AACTTGCTTGACAATGTCCA+AGG 0.603582 8.1:+34446812 None:intergenic
ATGAAAATTTACCTTGATGG+CGG 0.606141 8.1:-34446940 None:intergenic
TACCTAACTTAGCCAGCACA+TGG 0.612895 8.1:+34448562 MS.gene008794:CDS
AGCCAGCACATGGAAGGCAA+TGG 0.615743 8.1:+34448572 MS.gene008794:CDS
AGTTTGTCCTGCCTCCAGGA+AGG 0.624277 8.1:-34448717 None:intergenic
TCAATTATATGGCAATCAGA+AGG 0.624823 8.1:+34447063 MS.gene008794:CDS
GCTCAGGTAGCTCTTCGTTG+GGG 0.625808 8.1:+34449004 MS.gene008794:CDS
CTTTGGAATTGCAGAAATCG+CGG 0.626868 8.1:-34448740 None:intergenic
ATTGAGCACAATCAATGTGA+CGG 0.632356 8.1:-34447045 None:intergenic
TTGCCAAGTTCCCAAGCCGA+CGG 0.633068 8.1:-34446877 None:intergenic
GGAGCCAAGATCCCTTCCGT+CGG 0.642083 8.1:+34446861 MS.gene008794:CDS
AGCCAGGTTGGGGAGCCCAA+AGG 0.650642 8.1:-34448917 None:intergenic
ATTATATGGCAATCAGAAGG+AGG 0.657917 8.1:+34447066 MS.gene008794:CDS
AGCATTGTATGACTCTGGCA+AGG 0.662623 8.1:+34448596 MS.gene008794:CDS
GTTGAAGAAGCTGTTCGATG+AGG 0.666380 8.1:+34447187 MS.gene008794:CDS
TTACAGGCAAGATTACTGAA+GGG 0.677089 8.1:+34449389 MS.gene008794:intron
GAAGTTGGGAGATTTGCTCG+AGG 0.688084 8.1:+34448653 MS.gene008794:CDS
TAGCAACGGCTTCAGCAACG+AGG 0.714364 8.1:-34446917 None:intergenic
TTGAATGCCATCCTTCCTGG+AGG 0.726179 8.1:+34448706 MS.gene008794:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATAGGTTTTTTTTTTAA+TGG - chr8.1:34449307-34449326 None:intergenic 10.0%
!!! AATTACTAAAACTATAATTT+TGG + chr8.1:34448280-34448299 MS.gene008794:intron 10.0%
!!! ATTACTAAAACTATAATTTT+GGG + chr8.1:34448281-34448300 MS.gene008794:intron 10.0%
!!! ATTATTTTATGTAATGTTTA+GGG + chr8.1:34448887-34448906 MS.gene008794:intron 10.0%
!!! TAGTATGTTATTTTATAATT+TGG + chr8.1:34447829-34447848 MS.gene008794:intron 10.0%
!! ACTATAAGAATAAAATATGA+CGG + chr8.1:34448191-34448210 MS.gene008794:intron 15.0%
!! TAAAAAATAAAAATGTTTGG+TGG - chr8.1:34447799-34447818 None:intergenic 15.0%
!! TTTCATCTAATTTCAAAATT+TGG + chr8.1:34448402-34448421 MS.gene008794:intron 15.0%
!!! ACAATATGATATTTTTTTGA+GGG - chr8.1:34447899-34447918 None:intergenic 15.0%
!!! ACATAGTCTTTAATTTTATT+AGG + chr8.1:34448313-34448332 MS.gene008794:intron 15.0%
!!! CATTATTTTATGTAATGTTT+AGG + chr8.1:34448886-34448905 MS.gene008794:intron 15.0%
!!! TACAATATGATATTTTTTTG+AGG - chr8.1:34447900-34447919 None:intergenic 15.0%
!!! TATTTTTTTTTTTGAAAGGA+TGG + chr8.1:34448216-34448235 MS.gene008794:intron 15.0%
!!! TCTTAAACATTTTAGTTTTT+AGG + chr8.1:34447954-34447973 MS.gene008794:intron 15.0%
!! AATATACATACAATATGTGA+AGG + chr8.1:34447120-34447139 MS.gene008794:intron 20.0%
!! ATAATGAAAATTTACCTTGA+TGG - chr8.1:34446946-34446965 None:intergenic 20.0%
!! GCAAAAATATAATGACTTAT+TGG - chr8.1:34448867-34448886 None:intergenic 20.0%
!! TATATACCACAAGTTTATAA+TGG - chr8.1:34447695-34447714 None:intergenic 20.0%
!!! AAAACTTTGATGTTTTTGAT+TGG + chr8.1:34449083-34449102 MS.gene008794:CDS 20.0%
!!! AACAGGTATATAGTATTTTA+TGG + chr8.1:34449146-34449165 MS.gene008794:intron 20.0%
!!! AATGAATCTTTTGGTAATTA+AGG - chr8.1:34448066-34448085 None:intergenic 20.0%
!!! CTTTTCTTACTCAATATATT+GGG + chr8.1:34447931-34447950 MS.gene008794:intron 20.0%
!!! GGTGTATTTTTTTTTTTGAA+AGG + chr8.1:34448212-34448231 MS.gene008794:intron 20.0%
! AAGAAGAACTTCAACAATAT+AGG - chr8.1:34449322-34449341 None:intergenic 25.0%
! AATTAGATGAAATAAACCCT+AGG - chr8.1:34448394-34448413 None:intergenic 25.0%
! AATTTCTCTATCAAGAAGTT+GGG + chr8.1:34448639-34448658 MS.gene008794:CDS 25.0%
! ATAAAGCTGTATCTGATTAA+AGG + chr8.1:34449209-34449228 MS.gene008794:intron 25.0%
! ATATTTGTTCATGAAACCTA+TGG + chr8.1:34449416-34449435 MS.gene008794:CDS 25.0%
! ATTGATTGTGCTCAATTATA+TGG + chr8.1:34447052-34447071 MS.gene008794:CDS 25.0%
! CATCTAATTTCAAAATTTGG+TGG + chr8.1:34448405-34448424 MS.gene008794:intron 25.0%
! TCCTATGTAAAATTGTGAAT+TGG - chr8.1:34448165-34448184 None:intergenic 25.0%
!! AGTTGAGGAATGAAAATTTT+AGG + chr8.1:34449232-34449251 MS.gene008794:intron 25.0%
!! ATGTTTTATCTGATACATAC+AGG + chr8.1:34447015-34447034 MS.gene008794:intron 25.0%
!! CATATAAAATGACTTGCAAT+AGG - chr8.1:34449188-34449207 None:intergenic 25.0%
!! CTTTTTCCATTATAAACTTG+TGG + chr8.1:34447686-34447705 MS.gene008794:intron 25.0%
!! GCTTTTCTTACTCAATATAT+TGG + chr8.1:34447930-34447949 MS.gene008794:intron 25.0%
!! GTTGAGGAATGAAAATTTTA+GGG + chr8.1:34449233-34449252 MS.gene008794:intron 25.0%
!! TATATTTTCCAAAACTCAAG+TGG - chr8.1:34446970-34446989 None:intergenic 25.0%
!! TCCAATTCACAATTTTACAT+AGG + chr8.1:34448161-34448180 MS.gene008794:intron 25.0%
!! TGAAAAAGAAAGTGAGTTTT+TGG + chr8.1:34448014-34448033 MS.gene008794:intron 25.0%
!! TGATTTTCTCAAATTATCAG+CGG + chr8.1:34447485-34447504 MS.gene008794:intron 25.0%
!!! ATTGTCTAGTTTTATGACAA+TGG + chr8.1:34449357-34449376 MS.gene008794:intron 25.0%
!!! CTTTTGGTAATTAAGGATTA+GGG - chr8.1:34448059-34448078 None:intergenic 25.0%
!!! TAAATTTTCTGAGATTGAAC+AGG + chr8.1:34449129-34449148 MS.gene008794:CDS 25.0%
!!! TCTTTTGGTAATTAAGGATT+AGG - chr8.1:34448060-34448079 None:intergenic 25.0%
AAATCTATGAACCACGAATA+CGG - chr8.1:34447539-34447558 None:intergenic 30.0%
AATTTAGCAAACAAGTCTTC+AGG - chr8.1:34449115-34449134 None:intergenic 30.0%
ACTTGTGGTATATAGCAATA+TGG + chr8.1:34447701-34447720 MS.gene008794:intron 30.0%
ATGAAAATTTACCTTGATGG+CGG - chr8.1:34446943-34446962 None:intergenic 30.0%
CAATTTCTCTATCAAGAAGT+TGG + chr8.1:34448638-34448657 MS.gene008794:CDS 30.0%
GAAGTTCTTCTTTACTTTCA+TGG + chr8.1:34449330-34449349 MS.gene008794:intron 30.0%
TAACAAAAATGCAACGTATG+AGG - chr8.1:34448119-34448138 None:intergenic 30.0%
TAAGCATCCAATTCTAAATG+AGG + chr8.1:34448955-34448974 MS.gene008794:CDS 30.0%
TCAATTATATGGCAATCAGA+AGG + chr8.1:34447063-34447082 MS.gene008794:CDS 30.0%
TGATCATTCAAGAAAAGACT+TGG - chr8.1:34448788-34448807 None:intergenic 30.0%
TTCATGGTGAAATTGTGAAT+TGG - chr8.1:34448091-34448110 None:intergenic 30.0%
! ACAATGGCTTTTATTGTTAC+AGG + chr8.1:34449373-34449392 MS.gene008794:intron 30.0%
! CATTTAGAATTGGATGCTTA+AGG - chr8.1:34448955-34448974 None:intergenic 30.0%
! GAATTGGACAATGAATCTTT+TGG - chr8.1:34448075-34448094 None:intergenic 30.0%
! TAGCATTTTTCTCTTTCGTT+AGG - chr8.1:34449265-34449284 None:intergenic 30.0%
! TCATTATTCCACTTGAGTTT+TGG + chr8.1:34446959-34446978 MS.gene008794:intron 30.0%
! TTTTGGCGTGACTAAAATAA+TGG - chr8.1:34448353-34448372 None:intergenic 30.0%
!! CAAAAATTTAGTCTTGGATC+CGG + chr8.1:34448368-34448387 MS.gene008794:intron 30.0%
!! CACTTTCTTTTTCACAACAA+AGG - chr8.1:34448008-34448027 None:intergenic 30.0%
!!! AGTTTTTGGTCTACGATTTA+TGG + chr8.1:34448028-34448047 MS.gene008794:intron 30.0%
!!! CTTTTTTCATTTGCACTCTT+GGG - chr8.1:34449055-34449074 None:intergenic 30.0%
AACGTATGAGGATGAATTCA+TGG - chr8.1:34448107-34448126 None:intergenic 35.0%
AAGTTCTTCAAGAGATCTGT+AGG - chr8.1:34449444-34449463 None:intergenic 35.0%
ACAAATCAACGTAATCAAGC+TGG - chr8.1:34447403-34447422 None:intergenic 35.0%
ACAGATCTCTTGAAGAACTT+TGG + chr8.1:34449444-34449463 MS.gene008794:CDS 35.0%
ATCGAAGAATTGAATTGCCT+TGG - chr8.1:34446832-34446851 None:intergenic 35.0%
ATTATATGGCAATCAGAAGG+AGG + chr8.1:34447066-34447085 MS.gene008794:CDS 35.0%
ATTGAGCACAATCAATGTGA+CGG - chr8.1:34447048-34447067 None:intergenic 35.0%
CAGATCTCTTGAAGAACTTT+GGG + chr8.1:34449445-34449464 MS.gene008794:CDS 35.0%
CTTATTGGAAGAAAGCGAAA+AGG - chr8.1:34448852-34448871 None:intergenic 35.0%
GACATGCTCAATTTAACTGA+TGG + chr8.1:34448452-34448471 MS.gene008794:intron 35.0%
GTATCTGATTAAAGGAGTTG+AGG + chr8.1:34449217-34449236 MS.gene008794:intron 35.0%
TCAAACAAACCAGAGTTTAG+AGG - chr8.1:34447243-34447262 None:intergenic 35.0%
TCACGCCAAAAATTTAGTCT+TGG + chr8.1:34448362-34448381 MS.gene008794:intron 35.0%
TTAATGACCACTCAGTATGA+AGG + chr8.1:34447755-34447774 MS.gene008794:intron 35.0%
TTACAGGCAAGATTACTGAA+GGG + chr8.1:34449389-34449408 MS.gene008794:intron 35.0%
TTGCAATAGGTGTAGACTTA+GGG - chr8.1:34449175-34449194 None:intergenic 35.0%
TTGTATATTCTCCTACTGCT+TGG + chr8.1:34447559-34447578 MS.gene008794:intron 35.0%
TTTATCTGATACATACAGGC+TGG + chr8.1:34447019-34447038 MS.gene008794:intron 35.0%
! AAAGTCTTTTCCAATGCTAG+TGG - chr8.1:34447371-34447390 None:intergenic 35.0%
! ACTAGCATTGGAAAAGACTT+TGG + chr8.1:34447370-34447389 MS.gene008794:CDS 35.0%
! CCAAGAGTGCAAATGAAAAA+AGG + chr8.1:34449053-34449072 MS.gene008794:CDS 35.0%
! CGGATCCAAGACTAAATTTT+TGG - chr8.1:34448370-34448389 None:intergenic 35.0%
! GTTTAGGGTTATTCACCTTT+GGG + chr8.1:34448902-34448921 MS.gene008794:intron 35.0%
! TCAGCAACCTCATTTAGAAT+TGG - chr8.1:34448965-34448984 None:intergenic 35.0%
! TGTTTAGGGTTATTCACCTT+TGG + chr8.1:34448901-34448920 MS.gene008794:intron 35.0%
!!! CCTTTTTTCATTTGCACTCT+TGG - chr8.1:34449056-34449075 None:intergenic 35.0%
AATGAGGTTGCTGAGAAACT+AGG + chr8.1:34448971-34448990 MS.gene008794:CDS 40.0%
AATGCTAGTGGTACATCTTC+TGG - chr8.1:34447359-34447378 None:intergenic 40.0%
AGAAGATGTACCACTAGCAT+TGG + chr8.1:34447358-34447377 MS.gene008794:CDS 40.0%
AGATGAAATAAACCCTAGGC+CGG - chr8.1:34448390-34448409 None:intergenic 40.0%
CAATTCTTCGATCTCAACAC+CGG + chr8.1:34446840-34446859 MS.gene008794:CDS 40.0%
CATTCAACTTGATTGACAGC+AGG - chr8.1:34448693-34448712 None:intergenic 40.0%
CTTCGTTGGGGATTACAAAT+GGG + chr8.1:34449016-34449035 MS.gene008794:CDS 40.0%
CTTGCAATAGGTGTAGACTT+AGG - chr8.1:34449176-34449195 None:intergenic 40.0%
CTTGGAAACTTACAGAGAAG+TGG - chr8.1:34448770-34448789 None:intergenic 40.0%
GAAATCTGTTGTACACTGCT+TGG + chr8.1:34447623-34447642 MS.gene008794:intron 40.0%
GCGATAAAGAAAGGACCAAT+AGG + chr8.1:34448504-34448523 MS.gene008794:CDS 40.0%
GTTACAGGCAAGATTACTGA+AGG + chr8.1:34449388-34449407 MS.gene008794:intron 40.0%
TAATAGACTGCATGTGTGCT+TGG + chr8.1:34447647-34447666 MS.gene008794:intron 40.0%
TCTTCGTTGGGGATTACAAA+TGG + chr8.1:34449015-34449034 MS.gene008794:CDS 40.0%
TTCTTCTCTTGCTTGCAGAT+TGG + chr8.1:34447158-34447177 MS.gene008794:intron 40.0%
TTGAAGAAGCTGTTCGATGA+GGG + chr8.1:34447188-34447207 MS.gene008794:CDS 40.0%
! TCTCTTGAAGAACTTTGGGA+TGG + chr8.1:34449449-34449468 MS.gene008794:CDS 40.0%
! TGTGGATTACCTCTAAACTC+TGG + chr8.1:34447231-34447250 MS.gene008794:CDS 40.0%
! TTCTTCCTTTTCAGATCCAC+TGG + chr8.1:34448475-34448494 MS.gene008794:intron 40.0%
!! ATGGAAGCATTGTATGACTC+TGG + chr8.1:34448591-34448610 MS.gene008794:CDS 40.0%
!! CTTTGGAATTGCAGAAATCG+CGG - chr8.1:34448743-34448762 None:intergenic 40.0%
AAGAGATCTGTAGGCACCAT+AGG - chr8.1:34449435-34449454 None:intergenic 45.0%
AAGGACATCAGTATGAAGCC+AGG - chr8.1:34448936-34448955 None:intergenic 45.0%
AAGTTGAATGCCATCCTTCC+TGG + chr8.1:34448703-34448722 MS.gene008794:CDS 45.0%
AATGACCAGAACCAAGCAGT+AGG - chr8.1:34447573-34447592 None:intergenic 45.0%
ACATCAGTATGAAGCCAGGT+TGG - chr8.1:34448932-34448951 None:intergenic 45.0%
AGCATGATCAGTATTCCTGC+AGG - chr8.1:34447336-34447355 None:intergenic 45.0%
AGCATTGTATGACTCTGGCA+AGG + chr8.1:34448596-34448615 MS.gene008794:CDS 45.0%
ATAAGATGATGTGCACCTGC+AGG + chr8.1:34447318-34447337 MS.gene008794:intron 45.0%
ATCAGTATGAAGCCAGGTTG+GGG - chr8.1:34448930-34448949 None:intergenic 45.0%
ATGACCACTCAGTATGAAGG+TGG + chr8.1:34447758-34447777 MS.gene008794:intron 45.0%
ATTCTCCTACTGCTTGGTTC+TGG + chr8.1:34447565-34447584 MS.gene008794:intron 45.0%
CATCAGTATGAAGCCAGGTT+GGG - chr8.1:34448931-34448950 None:intergenic 45.0%
CATTAAGTCTGCAAGGCACA+TGG - chr8.1:34447741-34447760 None:intergenic 45.0%
CGCGATTTCTGCAATTCCAA+AGG + chr8.1:34448741-34448760 MS.gene008794:CDS 45.0%
GAGTGGTCATTAAGTCTGCA+AGG - chr8.1:34447748-34447767 None:intergenic 45.0%
GGTCCTTTCTTTATCGCAAC+TGG - chr8.1:34448501-34448520 None:intergenic 45.0%
GTTGAAGAAGCTGTTCGATG+AGG + chr8.1:34447187-34447206 MS.gene008794:CDS 45.0%
TAACTTAGCCAGCACATGGA+AGG + chr8.1:34448566-34448585 MS.gene008794:CDS 45.0%
TACAGAGAAGTGGACACCTT+TGG - chr8.1:34448760-34448779 None:intergenic 45.0%
TACCTAACTTAGCCAGCACA+TGG + chr8.1:34448562-34448581 MS.gene008794:CDS 45.0%
TAGTGAAGCGCGAAGATTTG+TGG + chr8.1:34447213-34447232 MS.gene008794:CDS 45.0%
TCAACTTGATTGACAGCAGG+AGG - chr8.1:34448690-34448709 None:intergenic 45.0%
TGGCCAGTTGCGATAAAGAA+AGG + chr8.1:34448495-34448514 MS.gene008794:CDS 45.0%
TTCAGCCTTAGCCGTGAATT+CGG - chr8.1:34448532-34448551 None:intergenic 45.0%
! GTTTGGTGGAACGACTTTAC+TGG - chr8.1:34447785-34447804 None:intergenic 45.0%
!! TTCCATGTGCTGGCTAAGTT+AGG - chr8.1:34448567-34448586 None:intergenic 45.0%
!! AAATAAAAAATAAAAATGTT+TGG - chr8.1:34447802-34447821 None:intergenic 5.0%
ACTGGCCAGTGGATCTGAAA+AGG - chr8.1:34448483-34448502 None:intergenic 50.0%
GTATGACTCTGGCAAGGCAA+AGG + chr8.1:34448602-34448621 MS.gene008794:CDS 50.0%
TCTGGCAAGGCAAAGGCTAT+AGG + chr8.1:34448609-34448628 MS.gene008794:CDS 50.0%
TCTTTATCGCAACTGGCCAG+TGG - chr8.1:34448494-34448513 None:intergenic 50.0%
TGCTCAGGTAGCTCTTCGTT+GGG + chr8.1:34449003-34449022 MS.gene008794:CDS 50.0%
TGGTCCACCTTCATACTGAG+TGG - chr8.1:34447765-34447784 None:intergenic 50.0%
TTCCATTGCCTTCCATGTGC+TGG - chr8.1:34448577-34448596 None:intergenic 50.0%
TTGAATGCCATCCTTCCTGG+AGG + chr8.1:34448706-34448725 MS.gene008794:CDS 50.0%
! CTCTTGCTTGCAGATTGGCT+TGG + chr8.1:34447163-34447182 MS.gene008794:intron 50.0%
! GAAGTTGGGAGATTTGCTCG+AGG + chr8.1:34448653-34448672 MS.gene008794:CDS 50.0%
!! ACCAATAGGCGCCGAATTCA+CGG + chr8.1:34448518-34448537 MS.gene008794:CDS 50.0%
!! TACCTTGATGGCGGTAGCAA+CGG - chr8.1:34446934-34446953 None:intergenic 50.0%
!! TTAGTCTTGGATCCGGCCTA+GGG + chr8.1:34448375-34448394 MS.gene008794:intron 50.0%
!! TTTAGTCTTGGATCCGGCCT+AGG + chr8.1:34448374-34448393 MS.gene008794:intron 50.0%
AAGTTCCCAAGCCGACGGAA+GGG - chr8.1:34446875-34446894 None:intergenic 55.0%
ACTAGGCAAGTCTCCTGCTC+AGG + chr8.1:34448988-34449007 MS.gene008794:CDS 55.0%
AGCCAGCACATGGAAGGCAA+TGG + chr8.1:34448572-34448591 MS.gene008794:CDS 55.0%
AGTTTGTCCTGCCTCCAGGA+AGG - chr8.1:34448720-34448739 None:intergenic 55.0%
CAACGAAGAGCTACCTGAGC+AGG - chr8.1:34449004-34449023 None:intergenic 55.0%
CTGCTCAGGTAGCTCTTCGT+TGG + chr8.1:34449002-34449021 MS.gene008794:CDS 55.0%
GCTCAGGTAGCTCTTCGTTG+GGG + chr8.1:34449004-34449023 MS.gene008794:CDS 55.0%
TAGCAACGGCTTCAGCAACG+AGG - chr8.1:34446920-34446939 None:intergenic 55.0%
TTGCCAAGTTCCCAAGCCGA+CGG - chr8.1:34446880-34446899 None:intergenic 55.0%
!! AAGATCCCTTCCGTCGGCTT+GGG + chr8.1:34446867-34446886 MS.gene008794:CDS 55.0%
AACGAGGCCAGGATCGTCCT+CGG - chr8.1:34446904-34446923 None:intergenic 60.0%
AGCCGTTGCTACCGCCATCA+AGG + chr8.1:34446929-34446948 MS.gene008794:CDS 60.0%
ATGCCATCCTTCCTGGAGGC+AGG + chr8.1:34448710-34448729 MS.gene008794:CDS 60.0%
CAAGCCGACGGAAGGGATCT+TGG - chr8.1:34446868-34446887 None:intergenic 60.0%
CAAGTTCCCAAGCCGACGGA+AGG - chr8.1:34446876-34446895 None:intergenic 60.0%
CCACGAATACGGTCACGACG+CGG - chr8.1:34447528-34447547 None:intergenic 60.0%
CTTGGGAACTTGGCAAGCCG+AGG + chr8.1:34446884-34446903 MS.gene008794:CDS 60.0%
GACGGAAGGGATCTTGGCTC+CGG - chr8.1:34446862-34446881 None:intergenic 60.0%
GCCGTGAATTCGGCGCCTAT+TGG - chr8.1:34448522-34448541 None:intergenic 60.0%
GGAGCCAAGATCCCTTCCGT+CGG + chr8.1:34446861-34446880 MS.gene008794:CDS 60.0%
TGTCCTGCCTCCAGGAAGGA+TGG - chr8.1:34448716-34448735 None:intergenic 60.0%
! CAAGATCCCTTCCGTCGGCT+TGG + chr8.1:34446866-34446885 MS.gene008794:CDS 60.0%
!! AGGCGCCGAATTCACGGCTA+AGG + chr8.1:34448524-34448543 MS.gene008794:CDS 60.0%
!! CTTCCGTCGGCTTGGGAACT+TGG + chr8.1:34446874-34446893 MS.gene008794:CDS 60.0%
ACGGCTTCAGCAACGAGGCC+AGG - chr8.1:34446915-34446934 None:intergenic 65.0%
CACCTTTGGGCTCCCCAACC+TGG + chr8.1:34448915-34448934 MS.gene008794:CDS 65.0%
CCGCGTCGTGACCGTATTCG+TGG + chr8.1:34447525-34447544 MS.gene008794:intron 65.0%
GCGGAGTTTGTCCTGCCTCC+AGG - chr8.1:34448724-34448743 None:intergenic 65.0%
TGGCAAGCCGAGGACGATCC+TGG + chr8.1:34446894-34446913 MS.gene008794:CDS 65.0%
! AGCCAGGTTGGGGAGCCCAA+AGG - chr8.1:34448920-34448939 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 34446825 34449481 34446825 ID=MS.gene008794
chr8.1 mRNA 34446825 34449481 34446825 ID=MS.gene008794.t1;Parent=MS.gene008794
chr8.1 exon 34446825 34446950 34446825 ID=MS.gene008794.t1.exon1;Parent=MS.gene008794.t1
chr8.1 CDS 34446825 34446950 34446825 ID=cds.MS.gene008794.t1;Parent=MS.gene008794.t1
chr8.1 exon 34447037 34447087 34447037 ID=MS.gene008794.t1.exon2;Parent=MS.gene008794.t1
chr8.1 CDS 34447037 34447087 34447037 ID=cds.MS.gene008794.t1;Parent=MS.gene008794.t1
chr8.1 exon 34447176 34447252 34447176 ID=MS.gene008794.t1.exon3;Parent=MS.gene008794.t1
chr8.1 CDS 34447176 34447252 34447176 ID=cds.MS.gene008794.t1;Parent=MS.gene008794.t1
chr8.1 exon 34447340 34447427 34447340 ID=MS.gene008794.t1.exon4;Parent=MS.gene008794.t1
chr8.1 CDS 34447340 34447427 34447340 ID=cds.MS.gene008794.t1;Parent=MS.gene008794.t1
chr8.1 exon 34448489 34448776 34448489 ID=MS.gene008794.t1.exon5;Parent=MS.gene008794.t1
chr8.1 CDS 34448489 34448776 34448489 ID=cds.MS.gene008794.t1;Parent=MS.gene008794.t1
chr8.1 exon 34448908 34449150 34448908 ID=MS.gene008794.t1.exon6;Parent=MS.gene008794.t1
chr8.1 CDS 34448908 34449150 34448908 ID=cds.MS.gene008794.t1;Parent=MS.gene008794.t1
chr8.1 exon 34449395 34449481 34449395 ID=MS.gene008794.t1.exon7;Parent=MS.gene008794.t1
chr8.1 CDS 34449395 34449481 34449395 ID=cds.MS.gene008794.t1;Parent=MS.gene008794.t1
Gene Sequence

>MS.gene008794

ATGTCCAAGGCAATTCAATTCTTCGATCTCAACACCGGAGCCAAGATCCCTTCCGTCGGCTTGGGAACTTGGCAAGCCGAGGACGATCCTGGCCTCGTTGCTGAAGCCGTTGCTACCGCCATCAAGGTAAATTTTCATTATTCCACTTGAGTTTTGGAAAATATATTTGTATTCAATATAATAAATAATGATGTTTTATCTGATACATACAGGCTGGTTACCGTCACATTGATTGTGCTCAATTATATGGCAATCAGAAGGAGGTACGTAATTCATTGTTTGTTTTCTTAATGTTAATATACATACAATATGTGAAGGAAATGATTCATTGTTTTCTTCTCTTGCTTGCAGATTGGCTTGGTGTTGAAGAAGCTGTTCGATGAGGGCGTAGTGAAGCGCGAAGATTTGTGGATTACCTCTAAACTCTGGTTTGTTTGAATGTTTTAGCTAATTTATGAATGTGTTAGTCGTGTTCACTATTGAGTAGTATCTAATAAGATGATGTGCACCTGCAGGAATACTGATCATGCTCCAGAAGATGTACCACTAGCATTGGAAAAGACTTTGGCAGAATTCCAGCTTGATTACGTTGATTTGTATCTTGTATGTAATAATTCTATCACTCAATCTTCATCTATCAAACACGAATACTGAATTACATGATTTTCTCAAATTATCAGCGGTGTCTACATGTCAATGTCCGCGTCGTGACCGTATTCGTGGTTCATAGATTTTTGTATATTCTCCTACTGCTTGGTTCTGGTCATTACTTTGTTTCAAAATTAGAAGTGAAAATGCGAAATCTGTTGTACACTGCTTGGTTAATAGACTGCATGTGTGCTTGGAAAAAGCTGTGTTTAACTTTTTCCATTATAAACTTGTGGTATATAGCAATATGGACGTAGCTGTTAAGCCATGTGCCTTGCAGACTTAATGACCACTCAGTATGAAGGTGGACCAGTAAAGTCGTTCCACCAAACATTTTTATTTTTTATTTTTAATATTAGTATGTTATTTTATAATTTGGTCTTTATATTTATTTTTGTGAATTTCATATCATATTTGTATATTCCCTCAAAAAAATATCATATTGTATATATAATGTGCTTTTCTTACTCAATATATTGGGTCTTAAACATTTTAGTTTTTAGGTTTAATTGAATTAATTCTTAATTAGAGTCCTTTGTTGTGAAAAAGAAAGTGAGTTTTTGGTCTACGATTTATGGATGAACCCTAATCCTTAATTACCAAAAGATTCATTGTCCAATTCACAATTTCACCATGAATTCATCCTCATACGTTGCATTTTTGTTATTTCATAATAAAAGATTCATTGTCCAATTCACAATTTTACATAGGATTGATGACTATAAGAATAAAATATGACGGTGTATTTTTTTTTTTGAAAGGATGGTTTATTTTGTTCAAATTAGCAATTGTTAATGTTACAAATAAAATTACTAAAACTATAATTTTGGGTGAAATAGTACATAGTCTTTAATTTTATTAGGCGAGTTTTTTGACACCATTATTTTAGTCACGCCAAAAATTTAGTCTTGGATCCGGCCTAGGGTTTATTTCATCTAATTTCAAAATTTGGTGGTTTAACAATTTTATTTCAGACATAGACATGCTCAATTTAACTGATGGTTCTTCCTTTTCAGATCCACTGGCCAGTTGCGATAAAGAAAGGACCAATAGGCGCCGAATTCACGGCTAAGGCTGAAGATCTTTTGATACCTAACTTAGCCAGCACATGGAAGGCAATGGAAGCATTGTATGACTCTGGCAAGGCAAAGGCTATAGGTGTGAGCAATTTCTCTATCAAGAAGTTGGGAGATTTGCTCGAGGTTGCTCGTGTTCCTCCTGCTGTCAATCAAGTTGAATGCCATCCTTCCTGGAGGCAGGACAAACTCCGCGATTTCTGCAATTCCAAAGGTGTCCACTTCTCTGTAAGTTTCCAAGTCTTTTCTTGAATGATCATTATTTTGTTTCAGCACATTATATTTACTATTTTCATGAAACCTTTTCGCTTTCTTCCAATAAGTCATTATATTTTTGCATTATTTTATGTAATGTTTAGGGTTATTCACCTTTGGGCTCCCCAACCTGGCTTCATACTGATGTCCTTAAGCATCCAATTCTAAATGAGGTTGCTGAGAAACTAGGCAAGTCTCCTGCTCAGGTAGCTCTTCGTTGGGGATTACAAATGGGTCATAGTGTGCTTCCCAAGAGTGCAAATGAAAAAAGGATAAAAGAAAACTTTGATGTTTTTGATTGGTCTATACCTGAAGACTTGTTTGCTAAATTTTCTGAGATTGAACAGGTATATAGTATTTTATGGTTGCCCTAAGTCTACACCTATTGCAAGTCATTTTATATGTATAAAGCTGTATCTGATTAAAGGAGTTGAGGAATGAAAATTTTAGGGTCAAATCCTAACGAAAGAGAAAAATGCTAACGTAACGACTAACATTTTCCATTAAAAAAAAAACCTATATTGTTGAAGTTCTTCTTTACTTTCATGGAAATATTGTCTAGTTTTATGACAATGGCTTTTATTGTTACAGGCAAGATTACTGAAGGGTGACATATTTGTTCATGAAACCTATGGTGCCTACAGATCTCTTGAAGAACTTTGGGATGGTGAAATCTAA

Protein sequence

>MS.gene008794.t1

MSKAIQFFDLNTGAKIPSVGLGTWQAEDDPGLVAEAVATAIKAGYRHIDCAQLYGNQKEIGLVLKKLFDEGVVKREDLWITSKLWNTDHAPEDVPLALEKTLAEFQLDYVDLYLIHWPVAIKKGPIGAEFTAKAEDLLIPNLASTWKAMEALYDSGKAKAIGVSNFSIKKLGDLLEVARVPPAVNQVECHPSWRQDKLRDFCNSKGVHFSGYSPLGSPTWLHTDVLKHPILNEVAEKLGKSPAQVALRWGLQMGHSVLPKSANEKRIKENFDVFDWSIPEDLFAKFSEIEQARLLKGDIFVHETYGAYRSLEELWDGEI