AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93058


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93058.t1 MTR_8g070115 98.413 315 5 0 1 315 1 315 0.0 643
MS.gene93058.t1 MTR_8g070095 82.866 321 47 3 1 315 1 319 0.0 550
MS.gene93058.t1 MTR_4g021350 71.429 315 88 1 1 315 1 313 1.10e-163 458
MS.gene93058.t1 MTR_4g021350 73.171 287 75 1 1 287 1 285 1.16e-148 419
MS.gene93058.t1 MTR_4g021450 68.371 313 88 2 2 314 3 304 3.03e-148 419
MS.gene93058.t1 MTR_4g021410 67.412 313 91 2 2 314 3 304 2.18e-145 411
MS.gene93058.t1 MTR_7g063580 65.161 310 107 1 6 315 46 354 1.20e-140 401
MS.gene93058.t1 MTR_4g021410 68.116 276 77 2 39 314 3 267 3.27e-127 364
MS.gene93058.t1 MTR_4g021450 67.364 239 67 2 76 314 1 228 1.11e-104 305
MS.gene93058.t1 MTR_4g021410 66.946 239 68 2 76 314 1 228 1.91e-103 302
MS.gene93058.t1 MTR_4g072320 45.631 309 161 4 10 315 11 315 2.70e-90 272
MS.gene93058.t1 MTR_4g021450 66.667 189 59 1 126 314 1 185 2.20e-89 265
MS.gene93058.t1 MTR_4g036845 42.633 319 172 5 2 315 3 315 7.75e-89 268
MS.gene93058.t1 MTR_4g072350 43.711 318 172 4 3 314 4 320 6.90e-84 256
MS.gene93058.t1 MTR_4g072360 43.408 311 169 5 10 314 11 320 2.15e-81 249
MS.gene93058.t1 MTR_7g070500 44.586 314 167 5 4 314 11 320 2.98e-79 244
MS.gene93058.t1 MTR_6g073110 39.482 309 180 4 10 312 11 318 5.74e-77 238
MS.gene93058.t1 MTR_0374s0050 39.414 307 171 4 14 314 18 315 9.94e-76 235
MS.gene93058.t1 MTR_7g070500 44.876 283 151 3 4 285 11 289 1.03e-71 224
MS.gene93058.t1 MTR_3g083130 40.328 305 168 5 15 314 20 315 1.50e-70 221
MS.gene93058.t1 MTR_5g097910 41.837 294 160 4 9 295 13 302 2.97e-64 205
MS.gene93058.t1 MTR_5g097940 41.837 294 160 4 9 295 13 302 2.97e-64 205
MS.gene93058.t1 MTR_5g097900 41.837 294 160 4 9 295 13 302 3.30e-64 205
MS.gene93058.t1 MTR_4g072060 40.426 282 154 4 8 277 3 282 2.02e-63 203
MS.gene93058.t1 MTR_6g072650 40.000 150 67 2 165 314 10 136 2.18e-31 115
MS.gene93058.t1 MTR_6g072710 40.541 111 66 0 183 293 1 111 2.27e-24 95.9
MS.gene93058.t1 MTR_4g021425 50.000 58 29 0 249 306 1 58 1.87e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93058.t1 AT2G37770 77.778 315 70 0 1 315 1 315 0.0 524
MS.gene93058.t1 AT2G37790 77.143 315 71 1 1 315 1 314 0.0 510
MS.gene93058.t1 AT3G53880 71.429 315 90 0 1 315 1 315 2.55e-167 468
MS.gene93058.t1 AT2G37760 66.667 315 101 1 1 315 1 311 4.13e-157 441
MS.gene93058.t1 AT2G37760 66.667 315 101 1 1 315 1 311 4.13e-157 441
MS.gene93058.t1 AT3G53880 71.528 288 82 0 1 288 1 288 7.34e-151 426
MS.gene93058.t1 AT2G37760 67.698 291 90 1 1 291 1 287 6.57e-145 410
MS.gene93058.t1 AT2G37760 67.698 291 90 1 1 291 1 287 6.57e-145 410
MS.gene93058.t1 AT2G37760 68.166 289 88 1 1 289 1 285 1.46e-144 409
MS.gene93058.t1 AT2G37760 66.923 260 86 0 56 315 6 265 8.18e-129 368
MS.gene93058.t1 AT2G37760 66.923 260 86 0 56 315 6 265 8.18e-129 368
MS.gene93058.t1 AT2G37770 75.229 218 53 1 1 217 1 218 3.13e-118 342
MS.gene93058.t1 AT5G01670 46.129 310 160 5 8 314 16 321 9.49e-90 271
MS.gene93058.t1 AT5G62420 45.016 311 164 4 10 315 8 316 2.06e-89 270
MS.gene93058.t1 AT5G01670 42.433 337 160 6 8 314 16 348 9.13e-84 256
MS.gene93058.t1 AT1G59960 40.909 308 172 7 16 315 21 326 9.18e-72 225
MS.gene93058.t1 AT2G21250 41.135 282 152 4 8 277 3 282 2.46e-71 223
MS.gene93058.t1 AT2G21260 38.411 302 171 5 8 296 3 302 1.84e-68 216
MS.gene93058.t1 AT1G59950 42.532 308 167 7 16 315 15 320 4.13e-68 215
MS.gene93058.t1 AT2G21250 41.981 212 112 2 8 210 3 212 3.95e-54 177
MS.gene93058.t1 AT2G21260 34.934 229 134 5 81 296 8 234 9.39e-40 140
MS.gene93058.t1 AT1G06690 26.032 315 164 15 15 277 57 354 1.18e-14 74.3

Find 96 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTGAAACGCGAAGATTTA+TGG 0.183771 8.2:+32696700 MS.gene93058:CDS
CCTTGCTTCATTTGTACTCT+TGG 0.238563 8.2:-32698553 None:intergenic
TCATTTGTTCATGAAACTTA+TGG 0.293075 8.2:+32699039 MS.gene93058:CDS
AAGTGGAATGCCATCCTTCC+TGG 0.316899 8.2:+32698154 MS.gene93058:CDS
CTTTGAAGCCAGGTTGTTCC+AGG 0.323565 8.2:-32698423 None:intergenic
ATTGATTGTGCTCAAGTCTA+TGG 0.334419 8.2:+32696544 MS.gene93058:CDS
CCAGTTCTTAATATGATTGC+TGG 0.336431 8.2:+32698462 MS.gene93058:CDS
CAGATCTGTTGAAGAACTTT+GGG 0.345765 8.2:+32699068 MS.gene93058:CDS
GTTTAGGGATATTCACCTTT+GGG 0.352925 8.2:+32698396 MS.gene93058:intron
TGAAACAAACCAGAGTTTAG+AGG 0.353779 8.2:-32696727 None:intergenic
CTTGCTTCATTTGTACTCTT+GGG 0.358576 8.2:-32698552 None:intergenic
TTCCATGTGCTGGCTAAGTT+AGG 0.363519 8.2:-32698015 None:intergenic
TTCCATTGCCTTCCATGTGC+TGG 0.365867 8.2:-32698025 None:intergenic
TCTTCGCTGGGGATTGCAAA+TGG 0.374689 8.2:+32698515 MS.gene93058:CDS
AATGCTAGTGGTACATCTTC+TGG 0.376017 8.2:-32697032 None:intergenic
TGCTCAGGTATCTCTTCGCT+GGG 0.384369 8.2:+32698503 MS.gene93058:CDS
CTTCCGTCGGCTTAGGTACC+TGG 0.387822 8.2:+32696345 MS.gene93058:CDS
TGTTTAGGGATATTCACCTT+TGG 0.389463 8.2:+32698395 MS.gene93058:intron
AATTTCTCTTCCAAGAAGTT+GGG 0.392264 8.2:+32698090 MS.gene93058:CDS
CTGCTCAGGTATCTCTTCGC+TGG 0.394392 8.2:+32698502 MS.gene93058:CDS
ACAGATCTGTTGAAGAACTT+TGG 0.394762 8.2:+32699067 MS.gene93058:CDS
CAATTTCTCTTCCAAGAAGT+TGG 0.394997 8.2:+32698089 MS.gene93058:CDS
TACAGAGAGGTGGACACCTT+TGG 0.404335 8.2:-32698208 None:intergenic
AATTTAGCAAACAAGTCTTC+AGG 0.406773 8.2:-32698612 None:intergenic
TCAGGCAAGGCACGGGCTAT+AGG 0.418687 8.2:+32698060 MS.gene93058:CDS
AATATGATTGCTGGGAAACT+AGG 0.422619 8.2:+32698471 MS.gene93058:CDS
TAAGCCGACGGAAGGGATCT+TGG 0.423343 8.2:-32696336 None:intergenic
AAGATCCCTTCCGTCGGCTT+AGG 0.429377 8.2:+32696338 MS.gene93058:CDS
CCAGCAATCATATTAAGAAC+TGG 0.429401 8.2:-32698462 None:intergenic
TATTCACCTTTGGGTTCCCC+TGG 0.441850 8.2:+32698405 MS.gene93058:CDS
GGTACCTGGCAGTCCGATCC+TGG 0.444341 8.2:+32696359 MS.gene93058:CDS
GATCCTTTCTTCATCGGAGC+AGG 0.456423 8.2:-32697961 None:intergenic
AACCTTGATGGCGGCAGCGA+CGG 0.457426 8.2:-32696396 None:intergenic
GATGAGGTGGTGAACCTTGA+TGG 0.460646 8.2:-32696408 None:intergenic
CTTCGCTGGGGATTGCAAAT+GGG 0.464158 8.2:+32698516 MS.gene93058:CDS
ACGGCTTGAGCGACGAGGCC+AGG 0.466947 8.2:-32696377 None:intergenic
TGGGTTCCCCTGGAACAACC+TGG 0.482642 8.2:+32698415 MS.gene93058:CDS
ATGCCATCCTTCCTGGAGGC+AGG 0.488471 8.2:+32698161 MS.gene93058:CDS
GACGGAAGGGATCTTGGCTC+CGG 0.493320 8.2:-32696330 None:intergenic
AGCCGTCGCTGCCGCCATCA+AGG 0.501675 8.2:+32696394 MS.gene93058:CDS
ACGCAGCTTGTCCTGCCTCC+AGG 0.505501 8.2:-32698172 None:intergenic
AATGACATCACTTTGAAGCC+AGG 0.508613 8.2:-32698433 None:intergenic
GTTTCAGGCAAGATTACTCC+GGG 0.509685 8.2:+32699011 MS.gene93058:intron
CAGCGAAGAGATACCTGAGC+AGG 0.517340 8.2:-32698501 None:intergenic
TGGCCTGCTCCGATGAAGAA+AGG 0.522104 8.2:+32697958 MS.gene93058:CDS
CCTACTGATCCTTTCTTCAT+CGG 0.525903 8.2:-32697967 None:intergenic
CAGTTCTTAATATGATTGCT+GGG 0.533432 8.2:+32698463 MS.gene93058:CDS
TGTCCTGCCTCCAGGAAGGA+TGG 0.536506 8.2:-32698164 None:intergenic
TCCTCCTGCTGTCAATCAAG+TGG 0.537498 8.2:+32698137 MS.gene93058:CDS
ATGGAAACACTCTATGACTC+AGG 0.543898 8.2:+32698042 MS.gene93058:CDS
AGAAGATGTACCACTAGCAT+TGG 0.544022 8.2:+32697034 MS.gene93058:CDS
ACTAGGCAAGACTCCTGCTC+AGG 0.544102 8.2:+32698488 MS.gene93058:CDS
GAGGCCAGGATCGGACTGCC+AGG 0.544147 8.2:-32696363 None:intergenic
CATTCCACTTGATTGACAGC+AGG 0.544893 8.2:-32698141 None:intergenic
TGTTTCAGGCAAGATTACTC+CGG 0.546358 8.2:+32699010 MS.gene93058:intron
ATTTCTCTTCCAAGAAGTTG+GGG 0.553939 8.2:+32698091 MS.gene93058:CDS
TTGAAGAAATTGTTTAACGA+AGG 0.558496 8.2:+32696675 MS.gene93058:CDS
TATGGATTACCTCTAAACTC+TGG 0.558925 8.2:+32696718 MS.gene93058:CDS
TCTTCATCGGAGCAGGCCAG+TGG 0.569231 8.2:-32697954 None:intergenic
CGTGATTTCTGTAATTCCAA+AGG 0.569400 8.2:+32698192 MS.gene93058:CDS
GTTAAACAATTTCTTCAACA+TGG 0.570607 8.2:-32696670 None:intergenic
ATGTACCACTAGCATTGGAC+AGG 0.570702 8.2:+32697039 MS.gene93058:CDS
TTGAGCGACGAGGCCAGGAT+CGG 0.573245 8.2:-32696372 None:intergenic
CAGGTACCTAAGCCGACGGA+AGG 0.573373 8.2:-32696344 None:intergenic
TCTATGACTCAGGCAAGGCA+CGG 0.574646 8.2:+32698052 MS.gene93058:CDS
TTTGTTCATGAAACTTATGG+TGG 0.577376 8.2:+32699042 MS.gene93058:CDS
CTATGACTCAGGCAAGGCAC+GGG 0.584856 8.2:+32698053 MS.gene93058:CDS
TAACTTAGCCAGCACATGGA+AGG 0.589109 8.2:+32698017 MS.gene93058:CDS
ATAAGTTTCATGAACAAATG+AGG 0.589589 8.2:-32699037 None:intergenic
TCCACTTGATTGACAGCAGG+AGG 0.589599 8.2:-32698138 None:intergenic
TTTGAAGCCAGGTTGTTCCA+GGG 0.593768 8.2:-32698422 None:intergenic
TTGAAGCCAGGTTGTTCCAG+GGG 0.595459 8.2:-32698421 None:intergenic
CGATTCTTCAATCTCAACAC+CGG 0.603511 8.2:+32696311 MS.gene93058:CDS
AGCTTGTCCTGCCTCCAGGA+AGG 0.607904 8.2:-32698168 None:intergenic
CTTGAAAACTTACAGAGAGG+TGG 0.612402 8.2:-32698218 None:intergenic
CCGATGAAGAAAGGATCAGT+AGG 0.612768 8.2:+32697967 MS.gene93058:CDS
AGCCAGCACATGGAAGGCAA+TGG 0.615743 8.2:+32698023 MS.gene93058:CDS
AGTCTATGGCAACGAGAAGG+AGG 0.620984 8.2:+32696558 MS.gene93058:CDS
CAGCGACGGCTTGAGCGACG+AGG 0.621876 8.2:-32696382 None:intergenic
CCAAGAGTACAAATGAAGCA+AGG 0.630543 8.2:+32698553 MS.gene93058:CDS
TCAAGTCTATGGCAACGAGA+AGG 0.639421 8.2:+32696555 MS.gene93058:CDS
AAAGTCCTGTCCAATGCTAG+TGG 0.640693 8.2:-32697044 None:intergenic
CTGCCAGGTACCTAAGCCGA+CGG 0.641497 8.2:-32696348 None:intergenic
GGAGCCAAGATCCCTTCCGT+CGG 0.642083 8.2:+32696332 MS.gene93058:CDS
AACCTAACTTAGCCAGCACA+TGG 0.643347 8.2:+32698013 MS.gene93058:CDS
CATGAACAAATGAGGCACCC+CGG 0.643553 8.2:-32699029 None:intergenic
CTTGAGCACAATCAATGTGA+CGG 0.651757 8.2:-32696537 None:intergenic
GTTGTTCCAGGGGAACCCAA+AGG 0.652449 8.2:-32698411 None:intergenic
AGGTACCTAAGCCGACGGAA+GGG 0.654265 8.2:-32696343 None:intergenic
AACACTCTATGACTCAGGCA+AGG 0.656592 8.2:+32698047 MS.gene93058:CDS
TTTCTCTTCCAAGAAGTTGG+GGG 0.662698 8.2:+32698092 MS.gene93058:CDS
TCTGTTGAAGAACTTTGGGA+TGG 0.686727 8.2:+32699072 MS.gene93058:CDS
GCTCAGGTATCTCTTCGCTG+GGG 0.724205 8.2:+32698504 MS.gene93058:CDS
TGGAATGCCATCCTTCCTGG+AGG 0.726179 8.2:+32698157 MS.gene93058:CDS
GAGGTGGTGAACCTTGATGG+CGG 0.754872 8.2:-32696405 None:intergenic
TTTCAGGCAAGATTACTCCG+GGG 0.779869 8.2:+32699012 MS.gene93058:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATTATTTAATAATGC+TGG + chr8.2:32696780-32696799 MS.gene93058:intron 10.0%
!! CTTCAAAAATATAATAATAA+TGG - chr8.2:32698342-32698361 None:intergenic 10.0%
!!! CATTATTATTATATTTTTGA+AGG + chr8.2:32698340-32698359 MS.gene93058:intron 10.0%
!! AAATTAATGATCAGATAATT+GGG - chr8.2:32697190-32697209 None:intergenic 15.0%
!! TAATTAAATTAGCTAAAACA+TGG - chr8.2:32696769-32696788 None:intergenic 15.0%
!!! AAAATTTTGATGTTTTTGAT+TGG + chr8.2:32698583-32698602 MS.gene93058:CDS 15.0%
!!! AAATTTTGATGTTTTTGATT+GGG + chr8.2:32698584-32698603 MS.gene93058:CDS 15.0%
!!! ATTTTCAATTTAAACTTTGA+AGG - chr8.2:32697213-32697232 None:intergenic 15.0%
!!! ATTTTCTCTAATTTAAAATG+TGG + chr8.2:32698363-32698382 MS.gene93058:intron 15.0%
!!! TTATTTCAAGTTTTAACAAA+CGG - chr8.2:32698318-32698337 None:intergenic 15.0%
!!! TTTCATGATATTTTTTTTAG+AGG + chr8.2:32698285-32698304 MS.gene93058:intron 15.0%
!! GAAATTAATGATCAGATAAT+TGG - chr8.2:32697191-32697210 None:intergenic 20.0%
!!! AATTTTGAATCTATTACCTA+AGG + chr8.2:32696970-32696989 MS.gene93058:intron 20.0%
!!! ATAAGAATAAGACTTGATTT+TGG + chr8.2:32698791-32698810 MS.gene93058:intron 20.0%
!!! ATTTTGAATCTATTACCTAA+GGG + chr8.2:32696971-32696990 MS.gene93058:intron 20.0%
!!! CAATCATTTTGATATATTAC+AGG + chr8.2:32696507-32696526 MS.gene93058:intron 20.0%
!!! TATAAGTGCTTTTAATTCTA+AGG + chr8.2:32697753-32697772 MS.gene93058:intron 20.0%
! ATAAGTTTCATGAACAAATG+AGG - chr8.2:32699040-32699059 None:intergenic 25.0%
! ATTGAGAAACTCTAATTTGA+AGG - chr8.2:32697564-32697583 None:intergenic 25.0%
! CTTATTTATAGCTGATAACA+TGG - chr8.2:32698776-32698795 None:intergenic 25.0%
! GTTAAACAATTTCTTCAACA+TGG - chr8.2:32696673-32696692 None:intergenic 25.0%
! TCATTTGTTCATGAAACTTA+TGG + chr8.2:32699039-32699058 MS.gene93058:CDS 25.0%
! TTCATAACTAAAAGACTACA+TGG - chr8.2:32697272-32697291 None:intergenic 25.0%
! TTGAAGAAATTGTTTAACGA+AGG + chr8.2:32696675-32696694 MS.gene93058:CDS 25.0%
! TTTCATCTGATTGCAAAATT+TGG + chr8.2:32697870-32697889 MS.gene93058:intron 25.0%
! TTTGACAGTATGAATCTATA+AGG + chr8.2:32698928-32698947 MS.gene93058:intron 25.0%
!! ATGTGGTACTTTTAATGTTT+AGG + chr8.2:32698380-32698399 MS.gene93058:intron 25.0%
!! TATTTTCCCTCTAATGTTTT+GGG + chr8.2:32698850-32698869 MS.gene93058:intron 25.0%
!! TGTGGTACTTTTAATGTTTA+GGG + chr8.2:32698381-32698400 MS.gene93058:intron 25.0%
!!! TAAATTTTCTGAGATTCAAC+AGG + chr8.2:32698629-32698648 MS.gene93058:CDS 25.0%
!!! TTTGGGTTAGCAATATTAAT+TGG - chr8.2:32698828-32698847 None:intergenic 25.0%
!!! TTTTTTTCTGCACATTACAT+TGG + chr8.2:32698258-32698277 MS.gene93058:intron 25.0%
AACTAAAAGACTACATGGAA+AGG - chr8.2:32697267-32697286 None:intergenic 30.0%
AATTTAGCAAACAAGTCTTC+AGG - chr8.2:32698615-32698634 None:intergenic 30.0%
AATTTCTCTTCCAAGAAGTT+GGG + chr8.2:32698090-32698109 MS.gene93058:CDS 30.0%
ACCTAATTTCTCCATCTATA+TGG + chr8.2:32697586-32697605 MS.gene93058:intron 30.0%
ACTGTCAAAAAACTAGTAAC+AGG - chr8.2:32698917-32698936 None:intergenic 30.0%
AGGAAAAATCATGTTGTACA+CGG + chr8.2:32697335-32697354 MS.gene93058:intron 30.0%
ATGTGACACTTAATATGAGA+CGG - chr8.2:32697465-32697484 None:intergenic 30.0%
ATTAGAGGGAAAATAGGTTT+GGG - chr8.2:32698845-32698864 None:intergenic 30.0%
CAAAACATTAGAGGGAAAAT+AGG - chr8.2:32698851-32698870 None:intergenic 30.0%
CAGTTCTTAATATGATTGCT+GGG + chr8.2:32698463-32698482 MS.gene93058:CDS 30.0%
CCTAATTTCTCCATCTATAT+GGG + chr8.2:32697587-32697606 MS.gene93058:intron 30.0%
TAAATCTTACATGCATCAGA+AGG - chr8.2:32697850-32697869 None:intergenic 30.0%
TCATTCTTTCTGTTGTAGAT+TGG + chr8.2:32696645-32696664 MS.gene93058:intron 30.0%
TTGTCAAATGCATGATTGTT+TGG + chr8.2:32697375-32697394 MS.gene93058:intron 30.0%
TTTAATAATGCTGGTAGAAG+AGG + chr8.2:32696789-32696808 MS.gene93058:intron 30.0%
TTTATAGCTGATAACATGGA+AGG - chr8.2:32698772-32698791 None:intergenic 30.0%
TTTGTTCATGAAACTTATGG+TGG + chr8.2:32699042-32699061 MS.gene93058:CDS 30.0%
! AAACGACATTTAAGATGAGA+TGG + chr8.2:32697688-32697707 MS.gene93058:intron 30.0%
! ACTTTTCTTACATAGCAACA+TGG + chr8.2:32697431-32697450 MS.gene93058:intron 30.0%
! ATTTTCCCTCTAATGTTTTG+GGG + chr8.2:32698851-32698870 MS.gene93058:intron 30.0%
! CTATTTTCCCTCTAATGTTT+TGG + chr8.2:32698849-32698868 MS.gene93058:intron 30.0%
!! CATTTTGATATATTACAGGC+TGG + chr8.2:32696511-32696530 MS.gene93058:intron 30.0%
!! CTTTTAGTTATGAAATTGCG+AGG + chr8.2:32697278-32697297 MS.gene93058:intron 30.0%
!!! CACTGCATTTTTTTTACTGT+AGG + chr8.2:32697315-32697334 MS.gene93058:intron 30.0%
AAAACTGGACAATGTTTCCA+TGG - chr8.2:32698973-32698992 None:intergenic 35.0%
AAAAGCCACTGTCATAAAAC+TGG - chr8.2:32698988-32699007 None:intergenic 35.0%
AATATGATTGCTGGGAAACT+AGG + chr8.2:32698471-32698490 MS.gene93058:CDS 35.0%
ACAGATCTGTTGAAGAACTT+TGG + chr8.2:32699067-32699086 MS.gene93058:CDS 35.0%
AGACTTGAAAACTTACAGAG+AGG - chr8.2:32698224-32698243 None:intergenic 35.0%
ATTGATTGTGCTCAAGTCTA+TGG + chr8.2:32696544-32696563 MS.gene93058:CDS 35.0%
ATTTCTCTTCCAAGAAGTTG+GGG + chr8.2:32698091-32698110 MS.gene93058:CDS 35.0%
CAATTTCTCTTCCAAGAAGT+TGG + chr8.2:32698089-32698108 MS.gene93058:CDS 35.0%
CAGATCTGTTGAAGAACTTT+GGG + chr8.2:32699068-32699087 MS.gene93058:CDS 35.0%
CATCTGATTGCAAAATTTGG+TGG + chr8.2:32697873-32697892 MS.gene93058:intron 35.0%
CATTAGAGGGAAAATAGGTT+TGG - chr8.2:32698846-32698865 None:intergenic 35.0%
CCAGCAATCATATTAAGAAC+TGG - chr8.2:32698465-32698484 None:intergenic 35.0%
CCAGTTCTTAATATGATTGC+TGG + chr8.2:32698462-32698481 MS.gene93058:CDS 35.0%
CCCATATAGATGGAGAAATT+AGG - chr8.2:32697590-32697609 None:intergenic 35.0%
CGTGATTTCTGTAATTCCAA+AGG + chr8.2:32698192-32698211 MS.gene93058:CDS 35.0%
CTTAAAACCAGAAAGACCAA+GGG - chr8.2:32698673-32698692 None:intergenic 35.0%
CTTGCTTCATTTGTACTCTT+GGG - chr8.2:32698555-32698574 None:intergenic 35.0%
GAAGTTCTTCTTTACTTCCA+TGG + chr8.2:32698953-32698972 MS.gene93058:intron 35.0%
GTTTAGGGATATTCACCTTT+GGG + chr8.2:32698396-32698415 MS.gene93058:intron 35.0%
TACATGGAAAGGATGTTTCT+TGG - chr8.2:32697256-32697275 None:intergenic 35.0%
TAGTGAAACGCGAAGATTTA+TGG + chr8.2:32696700-32696719 MS.gene93058:CDS 35.0%
TCAACAGGTAAAATGCTTGA+TGG + chr8.2:32698644-32698663 MS.gene93058:intron 35.0%
TCTTAAAACCAGAAAGACCA+AGG - chr8.2:32698674-32698693 None:intergenic 35.0%
TGAAACAAACCAGAGTTTAG+AGG - chr8.2:32696730-32696749 None:intergenic 35.0%
TGACATAATTCCACTTGTGT+CGG - chr8.2:32696874-32696893 None:intergenic 35.0%
TGTGACACTTAATATGAGAC+GGG - chr8.2:32697464-32697483 None:intergenic 35.0%
TGTTTAGGGATATTCACCTT+TGG + chr8.2:32698395-32698414 MS.gene93058:intron 35.0%
! ACAGTGGCTTTTATTGTTTC+AGG + chr8.2:32698996-32699015 MS.gene93058:intron 35.0%
! CACTAAAGTACCCATATAGA+TGG - chr8.2:32697600-32697619 None:intergenic 35.0%
! GACATTTAAGATGAGATGGA+GGG + chr8.2:32697692-32697711 MS.gene93058:intron 35.0%
! TATGGATTACCTCTAAACTC+TGG + chr8.2:32696718-32696737 MS.gene93058:CDS 35.0%
! TTTAAGATGATGTGCACTTC+AGG + chr8.2:32696994-32697013 MS.gene93058:intron 35.0%
!! ATTGTCCAGTTTTATGACAG+TGG + chr8.2:32698980-32698999 MS.gene93058:intron 35.0%
AAATCATGTTGTACACGGCT+TGG + chr8.2:32697340-32697359 MS.gene93058:intron 40.0%
AATGCTAGTGGTACATCTTC+TGG - chr8.2:32697035-32697054 None:intergenic 40.0%
AGAAGATGTACCACTAGCAT+TGG + chr8.2:32697034-32697053 MS.gene93058:CDS 40.0%
ATGAATCAGAGACACAGACA+AGG - chr8.2:32696950-32696969 None:intergenic 40.0%
ATGGAAACACTCTATGACTC+AGG + chr8.2:32698042-32698061 MS.gene93058:CDS 40.0%
CACTACACACATTCAATCAG+AGG - chr8.2:32696844-32696863 None:intergenic 40.0%
CCTACTGATCCTTTCTTCAT+CGG - chr8.2:32697970-32697989 None:intergenic 40.0%
CCTTGCTTCATTTGTACTCT+TGG - chr8.2:32698556-32698575 None:intergenic 40.0%
CGATTCTTCAATCTCAACAC+CGG + chr8.2:32696311-32696330 MS.gene93058:CDS 40.0%
CTTGAAAACTTACAGAGAGG+TGG - chr8.2:32698221-32698240 None:intergenic 40.0%
CTTGAGCACAATCAATGTGA+CGG - chr8.2:32696540-32696559 None:intergenic 40.0%
GCACATCATCTTAAACCCTT+AGG - chr8.2:32696989-32697008 None:intergenic 40.0%
TCCATCCCCAAAACATTAGA+GGG - chr8.2:32698859-32698878 None:intergenic 40.0%
TGTGCATGTGTAAATCGATG+AGG - chr8.2:32696427-32696446 None:intergenic 40.0%
TGTTTCAGGCAAGATTACTC+CGG + chr8.2:32699010-32699029 MS.gene93058:intron 40.0%
TTATAGTCGTCAAGTCTGCA+AGG - chr8.2:32697738-32697757 None:intergenic 40.0%
TTTCTCTTCCAAGAAGTTGG+GGG + chr8.2:32698092-32698111 MS.gene93058:CDS 40.0%
! AAATGCTTGATGGTTTCCCT+TGG + chr8.2:32698654-32698673 MS.gene93058:intron 40.0%
! CCAAGAGTACAAATGAAGCA+AGG + chr8.2:32698553-32698572 MS.gene93058:CDS 40.0%
! CGACATTTAAGATGAGATGG+AGG + chr8.2:32697691-32697710 MS.gene93058:intron 40.0%
! TCTGTTGAAGAACTTTGGGA+TGG + chr8.2:32699072-32699091 MS.gene93058:CDS 40.0%
! TTCTTCTTTTGCAGATCCAC+TGG + chr8.2:32697938-32697957 MS.gene93058:intron 40.0%
!! AATGACATCACTTTGAAGCC+AGG - chr8.2:32698436-32698455 None:intergenic 40.0%
AAAGTCCTGTCCAATGCTAG+TGG - chr8.2:32697047-32697066 None:intergenic 45.0%
AACACTCTATGACTCAGGCA+AGG + chr8.2:32698047-32698066 MS.gene93058:CDS 45.0%
AACCTAACTTAGCCAGCACA+TGG + chr8.2:32698013-32698032 MS.gene93058:CDS 45.0%
CAGCATATGCTGCATTGCTT+GGG + chr8.2:32697793-32697812 MS.gene93058:intron 45.0%
CATTCCACTTGATTGACAGC+AGG - chr8.2:32698144-32698163 None:intergenic 45.0%
CCGATGAAGAAAGGATCAGT+AGG + chr8.2:32697967-32697986 MS.gene93058:CDS 45.0%
CTCCATCCCCAAAACATTAG+AGG - chr8.2:32698860-32698879 None:intergenic 45.0%
GCATGTGTAAATCGATGAGG+TGG - chr8.2:32696424-32696443 None:intergenic 45.0%
GTTTCAGGCAAGATTACTCC+GGG + chr8.2:32699011-32699030 MS.gene93058:intron 45.0%
TAACTTAGCCAGCACATGGA+AGG + chr8.2:32698017-32698036 MS.gene93058:CDS 45.0%
TCAAGTCTATGGCAACGAGA+AGG + chr8.2:32696555-32696574 MS.gene93058:CDS 45.0%
TTTCAGGCAAGATTACTCCG+GGG + chr8.2:32699012-32699031 MS.gene93058:intron 45.0%
! ATGGTTTCCCTTGGTCTTTC+TGG + chr8.2:32698663-32698682 MS.gene93058:intron 45.0%
! ATGTACCACTAGCATTGGAC+AGG + chr8.2:32697039-32697058 MS.gene93058:CDS 45.0%
! TTTGAAGCCAGGTTGTTCCA+GGG - chr8.2:32698425-32698444 None:intergenic 45.0%
!! GTGTCAGTGTTTGTTGTGTC+CGG + chr8.2:32696921-32696940 MS.gene93058:intron 45.0%
!! TTCCATGTGCTGGCTAAGTT+AGG - chr8.2:32698018-32698037 None:intergenic 45.0%
!!! ATGTTTTGGGGATGGAGAGT+TGG + chr8.2:32698863-32698882 MS.gene93058:intron 45.0%
!!! TCCCTCTAATGTTTTGGGGA+TGG + chr8.2:32698855-32698874 MS.gene93058:intron 45.0%
!!! TCATTTTTTAAAATTATTAT+TGG + chr8.2:32696891-32696910 MS.gene93058:intron 5.0%
AAGTGGAATGCCATCCTTCC+TGG + chr8.2:32698154-32698173 MS.gene93058:CDS 50.0%
AGAGACACAGACAAGGACAC+CGG - chr8.2:32696943-32696962 None:intergenic 50.0%
AGTCTATGGCAACGAGAAGG+AGG + chr8.2:32696558-32696577 MS.gene93058:CDS 50.0%
CCAAGCAATGCAGCATATGC+TGG - chr8.2:32697795-32697814 None:intergenic 50.0%
CCAGCATATGCTGCATTGCT+TGG + chr8.2:32697792-32697811 MS.gene93058:intron 50.0%
CTTCGCTGGGGATTGCAAAT+GGG + chr8.2:32698516-32698535 MS.gene93058:CDS 50.0%
GAGCAAATCCCCCAACTTCT+TGG - chr8.2:32698103-32698122 None:intergenic 50.0%
GATCCTTTCTTCATCGGAGC+AGG - chr8.2:32697964-32697983 None:intergenic 50.0%
GATGAGGTGGTGAACCTTGA+TGG - chr8.2:32696411-32696430 None:intergenic 50.0%
GTGTCTAACACCGACACAAG+TGG + chr8.2:32696861-32696880 MS.gene93058:intron 50.0%
TACAGAGAGGTGGACACCTT+TGG - chr8.2:32698211-32698230 None:intergenic 50.0%
TCCACTTGATTGACAGCAGG+AGG - chr8.2:32698141-32698160 None:intergenic 50.0%
TCCTCCTGCTGTCAATCAAG+TGG + chr8.2:32698137-32698156 MS.gene93058:CDS 50.0%
TCTATGACTCAGGCAAGGCA+CGG + chr8.2:32698052-32698071 MS.gene93058:CDS 50.0%
TCTTCGCTGGGGATTGCAAA+TGG + chr8.2:32698515-32698534 MS.gene93058:CDS 50.0%
TGCTCAGGTATCTCTTCGCT+GGG + chr8.2:32698503-32698522 MS.gene93058:CDS 50.0%
TTCCATTGCCTTCCATGTGC+TGG - chr8.2:32698028-32698047 None:intergenic 50.0%
TTGAAGCCAGGTTGTTCCAG+GGG - chr8.2:32698424-32698443 None:intergenic 50.0%
! CATGAACAAATGAGGCACCC+CGG - chr8.2:32699032-32699051 None:intergenic 50.0%
! TATTCACCTTTGGGTTCCCC+TGG + chr8.2:32698405-32698424 MS.gene93058:CDS 50.0%
!! CTTTGAAGCCAGGTTGTTCC+AGG - chr8.2:32698426-32698445 None:intergenic 50.0%
ACTAGGCAAGACTCCTGCTC+AGG + chr8.2:32698488-32698507 MS.gene93058:CDS 55.0%
AGCCAGCACATGGAAGGCAA+TGG + chr8.2:32698023-32698042 MS.gene93058:CDS 55.0%
AGGTACCTAAGCCGACGGAA+GGG - chr8.2:32696346-32696365 None:intergenic 55.0%
CAGCGAAGAGATACCTGAGC+AGG - chr8.2:32698504-32698523 None:intergenic 55.0%
CTATGACTCAGGCAAGGCAC+GGG + chr8.2:32698053-32698072 MS.gene93058:CDS 55.0%
CTGCTCAGGTATCTCTTCGC+TGG + chr8.2:32698502-32698521 MS.gene93058:CDS 55.0%
GAGGTGGTGAACCTTGATGG+CGG - chr8.2:32696408-32696427 None:intergenic 55.0%
GCTCAGGTATCTCTTCGCTG+GGG + chr8.2:32698504-32698523 MS.gene93058:CDS 55.0%
GTTGTTCCAGGGGAACCCAA+AGG - chr8.2:32698414-32698433 None:intergenic 55.0%
TAAGCCGACGGAAGGGATCT+TGG - chr8.2:32696339-32696358 None:intergenic 55.0%
TGGAATGCCATCCTTCCTGG+AGG + chr8.2:32698157-32698176 MS.gene93058:CDS 55.0%
TGGCCTGCTCCGATGAAGAA+AGG + chr8.2:32697958-32697977 MS.gene93058:CDS 55.0%
! GAAGTTGGGGGATTTGCTCG+AGG + chr8.2:32698104-32698123 MS.gene93058:CDS 55.0%
!! AAGATCCCTTCCGTCGGCTT+AGG + chr8.2:32696338-32696357 MS.gene93058:CDS 55.0%
AGCTTGTCCTGCCTCCAGGA+AGG - chr8.2:32698171-32698190 None:intergenic 60.0%
ATGCCATCCTTCCTGGAGGC+AGG + chr8.2:32698161-32698180 MS.gene93058:CDS 60.0%
CAGGTACCTAAGCCGACGGA+AGG - chr8.2:32696347-32696366 None:intergenic 60.0%
CTGCCAGGTACCTAAGCCGA+CGG - chr8.2:32696351-32696370 None:intergenic 60.0%
GACGGAAGGGATCTTGGCTC+CGG - chr8.2:32696333-32696352 None:intergenic 60.0%
GGAGCCAAGATCCCTTCCGT+CGG + chr8.2:32696332-32696351 MS.gene93058:CDS 60.0%
TCTTCATCGGAGCAGGCCAG+TGG - chr8.2:32697957-32697976 None:intergenic 60.0%
TGGGTTCCCCTGGAACAACC+TGG + chr8.2:32698415-32698434 MS.gene93058:CDS 60.0%
TGTCCTGCCTCCAGGAAGGA+TGG - chr8.2:32698167-32698186 None:intergenic 60.0%
TTGAGCGACGAGGCCAGGAT+CGG - chr8.2:32696375-32696394 None:intergenic 60.0%
! TCAGGCAAGGCACGGGCTAT+AGG + chr8.2:32698060-32698079 MS.gene93058:CDS 60.0%
!! AACCTTGATGGCGGCAGCGA+CGG - chr8.2:32696399-32696418 None:intergenic 60.0%
!! CTTCCGTCGGCTTAGGTACC+TGG + chr8.2:32696345-32696364 MS.gene93058:CDS 60.0%
ACGCAGCTTGTCCTGCCTCC+AGG - chr8.2:32698175-32698194 None:intergenic 65.0%
GGTACCTGGCAGTCCGATCC+TGG + chr8.2:32696359-32696378 MS.gene93058:CDS 65.0%
ACGGCTTGAGCGACGAGGCC+AGG - chr8.2:32696380-32696399 None:intergenic 70.0%
AGCCGTCGCTGCCGCCATCA+AGG + chr8.2:32696394-32696413 MS.gene93058:CDS 70.0%
CAGCGACGGCTTGAGCGACG+AGG - chr8.2:32696385-32696404 None:intergenic 70.0%
GAGGCCAGGATCGGACTGCC+AGG - chr8.2:32696366-32696385 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 32696296 32699104 32696296 ID=MS.gene93058
chr8.2 mRNA 32696296 32699104 32696296 ID=MS.gene93058.t1;Parent=MS.gene93058
chr8.2 exon 32696296 32696415 32696296 ID=MS.gene93058.t1.exon1;Parent=MS.gene93058.t1
chr8.2 CDS 32696296 32696415 32696296 ID=cds.MS.gene93058.t1;Parent=MS.gene93058.t1
chr8.2 exon 32696529 32696579 32696529 ID=MS.gene93058.t1.exon2;Parent=MS.gene93058.t1
chr8.2 CDS 32696529 32696579 32696529 ID=cds.MS.gene93058.t1;Parent=MS.gene93058.t1
chr8.2 exon 32696663 32696739 32696663 ID=MS.gene93058.t1.exon3;Parent=MS.gene93058.t1
chr8.2 CDS 32696663 32696739 32696663 ID=cds.MS.gene93058.t1;Parent=MS.gene93058.t1
chr8.2 exon 32697016 32697103 32697016 ID=MS.gene93058.t1.exon4;Parent=MS.gene93058.t1
chr8.2 CDS 32697016 32697103 32697016 ID=cds.MS.gene93058.t1;Parent=MS.gene93058.t1
chr8.2 exon 32697952 32698227 32697952 ID=MS.gene93058.t1.exon5;Parent=MS.gene93058.t1
chr8.2 CDS 32697952 32698227 32697952 ID=cds.MS.gene93058.t1;Parent=MS.gene93058.t1
chr8.2 exon 32698402 32698650 32698402 ID=MS.gene93058.t1.exon6;Parent=MS.gene93058.t1
chr8.2 CDS 32698402 32698650 32698402 ID=cds.MS.gene93058.t1;Parent=MS.gene93058.t1
chr8.2 exon 32699018 32699104 32699018 ID=MS.gene93058.t1.exon7;Parent=MS.gene93058.t1
chr8.2 CDS 32699018 32699104 32699018 ID=cds.MS.gene93058.t1;Parent=MS.gene93058.t1
Gene Sequence

>MS.gene93058

ATGTCGAACGAGATTCGATTCTTCAATCTCAACACCGGAGCCAAGATCCCTTCCGTCGGCTTAGGTACCTGGCAGTCCGATCCTGGCCTCGTCGCTCAAGCCGTCGCTGCCGCCATCAAGGTTCACCACCTCATCGATTTACACATGCACATTTTTCGAAATCTCATTTTACACAATCATATTTGATTTTATATTTGATTTTGATTTTGATCAATCATTTTGATATATTACAGGCTGGATACCGTCACATTGATTGTGCTCAAGTCTATGGCAACGAGAAGGAGGTAATTCTTTCGTTGTTTGTTTTCGCAATGATAATGCAATTTCATGTGTGAATGAAATGATTCATTCATTCTTTCTGTTGTAGATTGGCTCCATGTTGAAGAAATTGTTTAACGAAGGCGTAGTGAAACGCGAAGATTTATGGATTACCTCTAAACTCTGGTTTGTTTCATTAATTAATTTTGCTTCCATGTTTTAGCTAATTTAATTATTTAATAATGCTGGTAGAAGAGGTTTTTCAACTCTATATTAAAGTACAGACACCTCTGATTGAATGTGTGTAGTGTCTAACACCGACACAAGTGGAATTATGTCATTTTTTAAAATTATTATTGGTGTTGACGTGTCAGTGTTTGTTGTGTCCGGTGTCCTTGTCTGTGTCTCTGATTCATAATTTTGAATCTATTACCTAAGGGTTTAAGATGATGTGCACTTCAGGAATACTGATCATGCTCCAGAAGATGTACCACTAGCATTGGACAGGACTTTGACAGACTTACAGCTTGATTACGTTGATTTGTATCTTGTATGTAATAATATTTCACTCAATCTTTAGATATTCTTCAACTACTTTGTTAAAAGTTTATGCATAATTATGATTTTACTACTCCCAATTATCTGATCATTAATTTCCTTCAAAGTTTAAATTGAAAATGAAATCTGAAGTATGAATTTCCAAGAAACATCCTTTCCATGTAGTCTTTTAGTTATGAAATTGCGAGGTTAATTAATTTACGCACTGCATTTTTTTTACTGTAGGAAAAATCATGTTGTACACGGCTTGGATAATAACTTAATTGTCAAATGCATGATTGTTTGGAAAATGCTATGTGTTTATCTTTTTCAATTCTAAACTTTTCTTACATAGCAACATGGAAATACTCCCGTCTCATATTAAGTGTCACATTTGTAGTATTTGCTTATCTCATTATTTATCACTTTAGAATATCAATGAAACTCTAATTACTTGTTTCACTAATAGACCTTCAAATTAGAGTTTCTCAATCAACCTAATTTCTCCATCTATATGGGTACTTTAGTGAATGAAGTTCATTTTTATGATAGAAACTAGTACACTACATGATTTTCTTATGAAATGTGCGTAATCTTAAACGACATTTAAGATGAGATGGAGGGAGTAGTTGTTAAGCTATGCGCCTTGCAGACTTGACGACTATAAGTGCTTTTAATTCTAAGGAATTTAATTTGCACTTCCAGCATATGCTGCATTGCTTGGGTGCTATTATTTTATTCATTTTTTTATGCTTTCCTTCTGATGCATGTAAGATTTATTTCATCTGATTGCAAAATTTGGTGGTTTAATATATTATTTAGTACATTCTTAATTGTTTATTGATGATTCTTCTTTTGCAGATCCACTGGCCTGCTCCGATGAAGAAAGGATCAGTAGGCTTCAAAGCTGAAAATCTAGTGCAACCTAACTTAGCCAGCACATGGAAGGCAATGGAAACACTCTATGACTCAGGCAAGGCACGGGCTATAGGTGTAAGCAATTTCTCTTCCAAGAAGTTGGGGGATTTGCTCGAGGTTGCTCGTGTTCCTCCTGCTGTCAATCAAGTGGAATGCCATCCTTCCTGGAGGCAGGACAAGCTGCGTGATTTCTGTAATTCCAAAGGTGTCCACCTCTCTGTAAGTTTTCAAGTCTTGAATGATCATTATTTTTTTTCTGCACATTACATTGGCTATTTTCATGATATTTTTTTTAGAGGATCTTTTCCGTTTGTTAAAACTTGAAATAAACCATTATTATTATATTTTTGAAGGATTTTCTCTAATTTAAAATGTGGTACTTTTAATGTTTAGGGATATTCACCTTTGGGTTCCCCTGGAACAACCTGGCTTCAAAGTGATGTCATTAAGCATCCAGTTCTTAATATGATTGCTGGGAAACTAGGCAAGACTCCTGCTCAGGTATCTCTTCGCTGGGGATTGCAAATGGGTCATAGTGTACTTCCCAAGAGTACAAATGAAGCAAGGATAAAAGAAAATTTTGATGTTTTTGATTGGGCTATACCTGAAGACTTGTTTGCTAAATTTTCTGAGATTCAACAGGTAAAATGCTTGATGGTTTCCCTTGGTCTTTCTGGTTTTAAGAACAGAATATATTAACTATATTGATATTCAGCTCTAGTTGTGAAGCAGCATAGCTAAAAATATTTGTTAGTCATCTCCTTCCATGTTATCAGCTATAAATAAGAATAAGACTTGATTTTGGATTCTTGATTTCCAATTAATATTGCTAACCCAAACCTATTTTCCCTCTAATGTTTTGGGGATGGAGAGTTGGAATTCATTTTTAGTTGAATCTAGATAAGCCTGTTACTAGTTTTTTGACAGTATGAATCTATAAGGCTGAAGTTCTTCTTTACTTCCATGGAAACATTGTCCAGTTTTATGACAGTGGCTTTTATTGTTTCAGGCAAGATTACTCCGGGGTGCCTCATTTGTTCATGAAACTTATGGTGGCTACAGATCTGTTGAAGAACTTTGGGATGGTGAAATCTAA

Protein sequence

>MS.gene93058.t1

MSNEIRFFNLNTGAKIPSVGLGTWQSDPGLVAQAVAAAIKAGYRHIDCAQVYGNEKEIGSMLKKLFNEGVVKREDLWITSKLWNTDHAPEDVPLALDRTLTDLQLDYVDLYLIHWPAPMKKGSVGFKAENLVQPNLASTWKAMETLYDSGKARAIGVSNFSSKKLGDLLEVARVPPAVNQVECHPSWRQDKLRDFCNSKGVHLSGYSPLGSPGTTWLQSDVIKHPVLNMIAGKLGKTPAQVSLRWGLQMGHSVLPKSTNEARIKENFDVFDWAIPEDLFAKFSEIQQARLLRGASFVHETYGGYRSVEELWDGEI