AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008793


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008793.t1 MTR_8g070115 98.730 315 4 0 1 315 1 315 0.0 645
MS.gene008793.t1 MTR_8g070095 83.178 321 46 3 1 315 1 319 0.0 552
MS.gene008793.t1 MTR_4g021350 71.746 315 87 1 1 315 1 313 2.45e-164 460
MS.gene008793.t1 MTR_4g021350 73.519 287 74 1 1 287 1 285 2.39e-149 421
MS.gene008793.t1 MTR_4g021450 68.051 313 89 2 2 314 3 304 1.22e-147 417
MS.gene008793.t1 MTR_4g021410 67.732 313 90 2 2 314 3 304 4.26e-146 413
MS.gene008793.t1 MTR_7g063580 65.161 310 107 1 6 315 46 354 5.60e-141 402
MS.gene008793.t1 MTR_4g021410 68.478 276 76 2 39 314 3 267 7.31e-128 365
MS.gene008793.t1 MTR_4g021410 67.364 239 67 2 76 314 1 228 4.41e-104 304
MS.gene008793.t1 MTR_4g021450 66.946 239 68 2 76 314 1 228 5.03e-104 304
MS.gene008793.t1 MTR_4g072320 45.631 309 161 4 10 315 11 315 2.76e-90 272
MS.gene008793.t1 MTR_4g036845 42.633 319 172 5 2 315 3 315 8.10e-89 268
MS.gene008793.t1 MTR_4g021450 66.138 189 60 1 126 314 1 185 1.05e-88 263
MS.gene008793.t1 MTR_4g072350 43.711 318 172 4 3 314 4 320 8.48e-84 256
MS.gene008793.t1 MTR_4g072360 43.408 311 169 5 10 314 11 320 2.08e-81 249
MS.gene008793.t1 MTR_7g070500 44.586 314 167 5 4 314 11 320 2.79e-79 244
MS.gene008793.t1 MTR_6g073110 39.482 309 180 4 10 312 11 318 5.99e-77 238
MS.gene008793.t1 MTR_0374s0050 39.414 307 171 4 14 314 18 315 1.02e-75 235
MS.gene008793.t1 MTR_7g070500 44.876 283 151 3 4 285 11 289 8.96e-72 224
MS.gene008793.t1 MTR_3g083130 40.328 305 168 5 15 314 20 315 1.35e-70 221
MS.gene008793.t1 MTR_5g097910 41.837 294 160 4 9 295 13 302 2.84e-64 205
MS.gene008793.t1 MTR_5g097940 41.837 294 160 4 9 295 13 302 2.84e-64 205
MS.gene008793.t1 MTR_5g097900 41.837 294 160 4 9 295 13 302 3.20e-64 205
MS.gene008793.t1 MTR_4g072060 40.426 282 154 4 8 277 3 282 9.81e-64 204
MS.gene008793.t1 MTR_6g072650 40.000 150 67 2 165 314 10 136 1.98e-31 115
MS.gene008793.t1 MTR_6g072710 40.541 111 66 0 183 293 1 111 2.37e-24 95.5
MS.gene008793.t1 MTR_4g021425 50.000 58 29 0 249 306 1 58 1.68e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008793.t1 AT2G37770 78.095 315 69 0 1 315 1 315 0.0 525
MS.gene008793.t1 AT2G37790 77.143 315 71 1 1 315 1 314 0.0 510
MS.gene008793.t1 AT3G53880 71.746 315 89 0 1 315 1 315 6.85e-168 469
MS.gene008793.t1 AT2G37760 66.984 315 100 1 1 315 1 311 7.73e-158 443
MS.gene008793.t1 AT2G37760 66.984 315 100 1 1 315 1 311 7.73e-158 443
MS.gene008793.t1 AT3G53880 71.875 288 81 0 1 288 1 288 2.08e-151 427
MS.gene008793.t1 AT2G37760 68.041 291 89 1 1 291 1 287 1.52e-145 411
MS.gene008793.t1 AT2G37760 68.041 291 89 1 1 291 1 287 1.52e-145 411
MS.gene008793.t1 AT2G37760 68.512 289 87 1 1 289 1 285 3.20e-145 410
MS.gene008793.t1 AT2G37760 67.308 260 85 0 56 315 6 265 1.71e-129 370
MS.gene008793.t1 AT2G37760 67.308 260 85 0 56 315 6 265 1.71e-129 370
MS.gene008793.t1 AT2G37770 75.688 218 52 1 1 217 1 218 6.57e-119 343
MS.gene008793.t1 AT5G01670 46.129 310 160 5 8 314 16 321 1.60e-89 270
MS.gene008793.t1 AT5G62420 45.016 311 164 4 10 315 8 316 1.91e-89 270
MS.gene008793.t1 AT5G01670 42.433 337 160 6 8 314 16 348 1.25e-83 256
MS.gene008793.t1 AT1G59960 40.909 308 172 7 16 315 21 326 7.72e-72 225
MS.gene008793.t1 AT2G21250 41.135 282 152 4 8 277 3 282 1.94e-71 224
MS.gene008793.t1 AT2G21260 38.411 302 171 5 8 296 3 302 1.23e-68 216
MS.gene008793.t1 AT1G59950 42.532 308 167 7 16 315 15 320 3.22e-68 216
MS.gene008793.t1 AT2G21250 41.981 212 112 2 8 210 3 212 2.92e-54 177
MS.gene008793.t1 AT2G21260 34.934 229 134 5 81 296 8 234 7.92e-40 140
MS.gene008793.t1 AT1G06690 26.032 315 164 15 15 277 57 354 1.20e-14 74.3

Find 95 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCTTCATTTGTACTCT+TGG 0.238563 8.1:-34438334 None:intergenic
TCATTTGTTCATGAAACTTA+TGG 0.293075 8.1:+34438816 MS.gene008793:CDS
AAGTGGAATGCCATCCTTCC+TGG 0.316899 8.1:+34437933 MS.gene008793:CDS
CTTTGAAGCCAGGTTGTTCC+AGG 0.323565 8.1:-34438204 None:intergenic
ATTGATTGTGCTCAAGTCTA+TGG 0.334419 8.1:+34436311 MS.gene008793:CDS
CCAGTTCTTAATATGATTGC+TGG 0.336431 8.1:+34438243 MS.gene008793:CDS
CAGATCTGTTGAAGAACTTT+GGG 0.345765 8.1:+34438845 MS.gene008793:CDS
AATGCTAATGGTACATCTTC+TGG 0.352785 8.1:-34436821 None:intergenic
GTTTAGGGATATTCACCTTT+GGG 0.352925 8.1:+34438177 MS.gene008793:intron
TGAAACAAACCAGAGTTTAG+AGG 0.353779 8.1:-34436494 None:intergenic
CTTGCTTCATTTGTACTCTT+GGG 0.358576 8.1:-34438333 None:intergenic
TTCCATGTGCTGGCTAAGTT+AGG 0.363519 8.1:-34437794 None:intergenic
TCTTCGCTGGGGATTGCAAA+TGG 0.374689 8.1:+34438296 MS.gene008793:CDS
TGCTCAGGTATCTCTTCGCT+GGG 0.384369 8.1:+34438284 MS.gene008793:CDS
CTTCCGTCGGCTTAGGTACC+TGG 0.387822 8.1:+34436112 MS.gene008793:CDS
TGTTTAGGGATATTCACCTT+TGG 0.389463 8.1:+34438176 MS.gene008793:intron
AATTTCTCTTCCAAGAAGTT+GGG 0.392264 8.1:+34437869 MS.gene008793:CDS
CTGCTCAGGTATCTCTTCGC+TGG 0.394392 8.1:+34438283 MS.gene008793:CDS
ACAGATCTGTTGAAGAACTT+TGG 0.394762 8.1:+34438844 MS.gene008793:CDS
TTCCATTGCCTTCCATGTGC+TGG 0.394884 8.1:-34437804 None:intergenic
CAATTTCTCTTCCAAGAAGT+TGG 0.394997 8.1:+34437868 MS.gene008793:CDS
TACAGAGAGGTGGACACCTT+TGG 0.404335 8.1:-34437987 None:intergenic
AATTTAGCAAACAAGTCTTC+AGG 0.406773 8.1:-34438393 None:intergenic
TAGTGAAACGCGAAGATTTG+TGG 0.416753 8.1:+34436467 MS.gene008793:CDS
TCAGGCAAGGCACGGGCTAT+AGG 0.418687 8.1:+34437839 MS.gene008793:CDS
AATATGATTGCTGGGAAACT+AGG 0.422619 8.1:+34438252 MS.gene008793:CDS
TAAGCCGACGGAAGGGATCT+TGG 0.423343 8.1:-34436103 None:intergenic
AAGATCCCTTCCGTCGGCTT+AGG 0.429377 8.1:+34436105 MS.gene008793:CDS
CCAGCAATCATATTAAGAAC+TGG 0.429401 8.1:-34438243 None:intergenic
TATTCACCTTTGGGTTCCCC+TGG 0.441850 8.1:+34438186 MS.gene008793:CDS
GGTACCTGGCAGTCCGATCC+TGG 0.444341 8.1:+34436126 MS.gene008793:CDS
GATCCTTTCTTCATCGGAGC+AGG 0.456423 8.1:-34437740 None:intergenic
AACCTTGATGGCGGCAGCGA+CGG 0.457426 8.1:-34436163 None:intergenic
AAAGTCCTGTCCAATGCTAA+TGG 0.458600 8.1:-34436833 None:intergenic
GATGAGGTGGTGAACCTTGA+TGG 0.460646 8.1:-34436175 None:intergenic
ACGGCTTGTGCGACGAGGCC+AGG 0.461216 8.1:-34436144 None:intergenic
CTTCGCTGGGGATTGCAAAT+GGG 0.464158 8.1:+34438297 MS.gene008793:CDS
ATGGAAGCACTCTATGACTC+AGG 0.466809 8.1:+34437821 MS.gene008793:CDS
TGGGTTCCCCTGGAACAACC+TGG 0.482642 8.1:+34438196 MS.gene008793:CDS
ATGCCATCCTTCCTGGAGGC+AGG 0.488471 8.1:+34437940 MS.gene008793:CDS
GACGGAAGGGATCTTGGCTC+CGG 0.493320 8.1:-34436097 None:intergenic
ACGCAGCTTGTCCTGCCTCC+AGG 0.505501 8.1:-34437951 None:intergenic
AGCCGTCGCTGCCGCCATCA+AGG 0.506915 8.1:+34436161 MS.gene008793:CDS
AATGACATCACTTTGAAGCC+AGG 0.508613 8.1:-34438214 None:intergenic
GTTTCAGGCAAGATTACTCC+GGG 0.509685 8.1:+34438788 MS.gene008793:intron
CAGCGAAGAGATACCTGAGC+AGG 0.517340 8.1:-34438282 None:intergenic
TGGCCTGCTCCGATGAAGAA+AGG 0.522104 8.1:+34437737 MS.gene008793:CDS
TCCTCCTGCTGTCAATCAAG+TGG 0.525136 8.1:+34437916 MS.gene008793:CDS
CCTACTGATCCTTTCTTCAT+CGG 0.525903 8.1:-34437746 None:intergenic
CAGTTCTTAATATGATTGCT+GGG 0.533432 8.1:+34438244 MS.gene008793:CDS
AGAAGATGTACCATTAGCAT+TGG 0.535612 8.1:+34436823 MS.gene008793:CDS
TGTCCTGCCTCCAGGAAGGA+TGG 0.536506 8.1:-34437943 None:intergenic
ACTAGGCAAGACTCCTGCTC+AGG 0.544102 8.1:+34438269 MS.gene008793:CDS
GAGGCCAGGATCGGACTGCC+AGG 0.544147 8.1:-34436130 None:intergenic
CATTCCACTTGATTGACAGC+AGG 0.544893 8.1:-34437920 None:intergenic
TTGTGCGACGAGGCCAGGAT+CGG 0.545340 8.1:-34436139 None:intergenic
TGTTTCAGGCAAGATTACTC+CGG 0.546358 8.1:+34438787 MS.gene008793:intron
TGTGGATTACCTCTAAACTC+TGG 0.549050 8.1:+34436485 MS.gene008793:CDS
ATTTCTCTTCCAAGAAGTTG+GGG 0.553939 8.1:+34437870 MS.gene008793:CDS
TTGAAGAAATTGTTTAACGA+AGG 0.558496 8.1:+34436442 MS.gene008793:CDS
ATGTACCATTAGCATTGGAC+AGG 0.562553 8.1:+34436828 MS.gene008793:CDS
TCTTCATCGGAGCAGGCCAG+TGG 0.569231 8.1:-34437733 None:intergenic
CGTGATTTCTGTAATTCCAA+AGG 0.569400 8.1:+34437971 MS.gene008793:CDS
GTTAAACAATTTCTTCAACA+TGG 0.570607 8.1:-34436437 None:intergenic
CAGGTACCTAAGCCGACGGA+AGG 0.573373 8.1:-34436111 None:intergenic
CTATGACTCAGGCAAGGCAC+GGG 0.584856 8.1:+34437832 MS.gene008793:CDS
TCTATGACTCAGGCAAGGCA+CGG 0.586350 8.1:+34437831 MS.gene008793:CDS
TAACTTAGCCAGCACATGGA+AGG 0.589109 8.1:+34437796 MS.gene008793:CDS
TCCACTTGATTGACAGCAGG+AGG 0.589599 8.1:-34437917 None:intergenic
TTTGTTCATGAAACTTATGG+TGG 0.591951 8.1:+34438819 MS.gene008793:CDS
TTTGAAGCCAGGTTGTTCCA+GGG 0.593768 8.1:-34438203 None:intergenic
TTGAAGCCAGGTTGTTCCAG+GGG 0.595459 8.1:-34438202 None:intergenic
CAGCGACGGCTTGTGCGACG+AGG 0.599107 8.1:-34436149 None:intergenic
CGATTCTTCAATCTCAACAC+CGG 0.603511 8.1:+34436078 MS.gene008793:CDS
AGCTTGTCCTGCCTCCAGGA+AGG 0.607904 8.1:-34437947 None:intergenic
CTTGAAAACTTACAGAGAGG+TGG 0.612402 8.1:-34437997 None:intergenic
CCGATGAAGAAAGGATCAGT+AGG 0.612768 8.1:+34437746 MS.gene008793:CDS
AGCCAGCACATGGAAGGCAA+TGG 0.615743 8.1:+34437802 MS.gene008793:CDS
AGTCTATGGCAACGAGAAGG+AGG 0.620984 8.1:+34436325 MS.gene008793:CDS
CCAAGAGTACAAATGAAGCA+AGG 0.630543 8.1:+34438334 MS.gene008793:CDS
TCAAGTCTATGGCAACGAGA+AGG 0.639421 8.1:+34436322 MS.gene008793:CDS
CTGCCAGGTACCTAAGCCGA+CGG 0.641497 8.1:-34436115 None:intergenic
GGAGCCAAGATCCCTTCCGT+CGG 0.642083 8.1:+34436099 MS.gene008793:CDS
AACCTAACTTAGCCAGCACA+TGG 0.643347 8.1:+34437792 MS.gene008793:CDS
CTTGAGCACAATCAATGTGA+CGG 0.651757 8.1:-34436304 None:intergenic
GTTGTTCCAGGGGAACCCAA+AGG 0.652449 8.1:-34438192 None:intergenic
AGGTACCTAAGCCGACGGAA+GGG 0.654265 8.1:-34436110 None:intergenic
TTTCTCTTCCAAGAAGTTGG+GGG 0.662698 8.1:+34437871 MS.gene008793:CDS
AGCACTCTATGACTCAGGCA+AGG 0.675094 8.1:+34437826 MS.gene008793:CDS
TCTGTTGAAGAACTTTGGGA+TGG 0.686727 8.1:+34438849 MS.gene008793:CDS
CATGAACAAATGAAGCACCC+CGG 0.701316 8.1:-34438806 None:intergenic
GCTCAGGTATCTCTTCGCTG+GGG 0.724205 8.1:+34438285 MS.gene008793:CDS
TGGAATGCCATCCTTCCTGG+AGG 0.726179 8.1:+34437936 MS.gene008793:CDS
GAGGTGGTGAACCTTGATGG+CGG 0.754872 8.1:-34436172 None:intergenic
TTTCAGGCAAGATTACTCCG+GGG 0.779869 8.1:+34438789 MS.gene008793:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTCAAAAATATAATAATAA+GGG - chr8.1:34438123-34438142 None:intergenic 10.0%
!! TCTTCAAAAATATAATAATA+AGG - chr8.1:34438124-34438143 None:intergenic 10.0%
!!! AAAATTTTGATGTTTTTGAT+TGG + chr8.1:34438364-34438383 MS.gene008793:CDS 15.0%
!!! AAATTTTGATGTTTTTGATT+GGG + chr8.1:34438365-34438384 MS.gene008793:CDS 15.0%
!!! ATTTTCTCTAATTTAAAATG+TGG + chr8.1:34438144-34438163 MS.gene008793:intron 15.0%
!!! TTTTAGCTAATTCAATTATT+TGG + chr8.1:34436538-34436557 MS.gene008793:intron 15.0%
!! ATTCAATTATTTGGTAGAAT+AGG + chr8.1:34436547-34436566 MS.gene008793:intron 20.0%
!! ATTGTGAGGTTAATTAATTA+CGG + chr8.1:34437081-34437100 MS.gene008793:intron 20.0%
!! TAATTGAATTAGCTAAAACA+TGG - chr8.1:34436536-34436555 None:intergenic 20.0%
!! TCACTGTTTCAAATTATTAT+TGG + chr8.1:34436660-34436679 MS.gene008793:intron 20.0%
!!! CAATCATTTTGATATATTAC+AGG + chr8.1:34436274-34436293 MS.gene008793:intron 20.0%
!!! TATAAGTGCTTTTAATTCTA+AGG + chr8.1:34437532-34437551 MS.gene008793:intron 20.0%
!!! TCATGATTTTTTTTTTTGAG+AGG + chr8.1:34438066-34438085 MS.gene008793:intron 20.0%
!!! TCATTTCAAGTTTTAACAAA+CGG - chr8.1:34438099-34438118 None:intergenic 20.0%
! AAATTAATGATCAGAGAACT+GGG - chr8.1:34436979-34436998 None:intergenic 25.0%
! ATTGAGAAACTCTAATTTGA+AGG - chr8.1:34437343-34437362 None:intergenic 25.0%
! GTTAAACAATTTCTTCAACA+TGG - chr8.1:34436440-34436459 None:intergenic 25.0%
! TCATTTGTTCATGAAACTTA+TGG + chr8.1:34438816-34438835 MS.gene008793:CDS 25.0%
! TTCATAACTAAAAGACTACA+TGG - chr8.1:34437061-34437080 None:intergenic 25.0%
! TTGAAGAAATTGTTTAACGA+AGG + chr8.1:34436442-34436461 MS.gene008793:CDS 25.0%
! TTTCATCTGATTGCAAAATT+TGG + chr8.1:34437649-34437668 MS.gene008793:intron 25.0%
! TTTGACAGTATGAATCTATA+AGG + chr8.1:34438708-34438727 MS.gene008793:intron 25.0%
!! AAACGATATTTAAGATGAGA+TGG + chr8.1:34437467-34437486 MS.gene008793:intron 25.0%
!! ATGTGGTACTTTTAATGTTT+AGG + chr8.1:34438161-34438180 MS.gene008793:intron 25.0%
!! GTAAGAATAAGACTTGATTT+TGG + chr8.1:34438571-34438590 MS.gene008793:intron 25.0%
!! TATTTTCCCTCTAATGTTTT+GGG + chr8.1:34438630-34438649 MS.gene008793:intron 25.0%
!! TGTGGTACTTTTAATGTTTA+GGG + chr8.1:34438162-34438181 MS.gene008793:intron 25.0%
!!! CTTTTAGTTATGAAATTGTG+AGG + chr8.1:34437067-34437086 MS.gene008793:intron 25.0%
!!! TAAATTTTCTGAGATTCAAC+AGG + chr8.1:34438410-34438429 MS.gene008793:CDS 25.0%
!!! TTTGGGTTAGCAATATTAAT+TGG - chr8.1:34438608-34438627 None:intergenic 25.0%
AACTAAAAGACTACATGGAA+AGG - chr8.1:34437056-34437075 None:intergenic 30.0%
AATTAATGATCAGAGAACTG+GGG - chr8.1:34436978-34436997 None:intergenic 30.0%
AATTTAGCAAACAAGTCTTC+AGG - chr8.1:34438396-34438415 None:intergenic 30.0%
AATTTCTCTTCCAAGAAGTT+GGG + chr8.1:34437869-34437888 MS.gene008793:CDS 30.0%
ACTGTCAAATAACTAACAAC+AGG - chr8.1:34438697-34438716 None:intergenic 30.0%
AGGAAAAATCCTATTGTACA+CGG + chr8.1:34437122-34437141 MS.gene008793:intron 30.0%
ATGTGACACTTAATATGAGA+CGG - chr8.1:34437252-34437271 None:intergenic 30.0%
ATTAGAGGGAAAATAGGTTT+GGG - chr8.1:34438625-34438644 None:intergenic 30.0%
CAAAACATTAGAGGGAAAAT+AGG - chr8.1:34438631-34438650 None:intergenic 30.0%
CAGTTCTTAATATGATTGCT+GGG + chr8.1:34438244-34438263 MS.gene008793:CDS 30.0%
CTTAAAATCAGAAAGACCAA+GGG - chr8.1:34438454-34438473 None:intergenic 30.0%
CTTTAATGTTCAGAACCTAA+GGG + chr8.1:34436760-34436779 MS.gene008793:intron 30.0%
GAAATTAATGATCAGAGAAC+TGG - chr8.1:34436980-34436999 None:intergenic 30.0%
TAAATCTTACATGCATCAGA+AGG - chr8.1:34437629-34437648 None:intergenic 30.0%
TCATTCTTTCTGTTGTAGAT+TGG + chr8.1:34436412-34436431 MS.gene008793:intron 30.0%
TCTTAAAATCAGAAAGACCA+AGG - chr8.1:34438455-34438474 None:intergenic 30.0%
TCTTTAATGTTCAGAACCTA+AGG + chr8.1:34436759-34436778 MS.gene008793:intron 30.0%
TTCAATGTAATCACTTGTGT+CGG - chr8.1:34436635-34436654 None:intergenic 30.0%
TTGCAGAATGTATGATTGTT+TGG + chr8.1:34437162-34437181 MS.gene008793:intron 30.0%
TTTGTTCATGAAACTTATGG+TGG + chr8.1:34438819-34438838 MS.gene008793:CDS 30.0%
! ACTTTTCTTACATAGCAACA+TGG + chr8.1:34437218-34437237 MS.gene008793:intron 30.0%
! ATTTTCCCTCTAATGTTTTG+GGG + chr8.1:34438631-34438650 MS.gene008793:intron 30.0%
! CTATTTTCCCTCTAATGTTT+TGG + chr8.1:34438629-34438648 MS.gene008793:intron 30.0%
! GATATTTAAGATGAGATGGA+GGG + chr8.1:34437471-34437490 MS.gene008793:intron 30.0%
!! CATTTTGATATATTACAGGC+TGG + chr8.1:34436278-34436297 MS.gene008793:intron 30.0%
!! TTTGTTTCTGCACATTACAT+TGG + chr8.1:34438037-34438056 MS.gene008793:intron 30.0%
!!! GGACTGCATTTTTTTATTGT+AGG + chr8.1:34437102-34437121 MS.gene008793:intron 30.0%
AAAACTGGACAATGTTTCCA+TGG - chr8.1:34438750-34438769 None:intergenic 35.0%
AAAAGCCACTGTCATAAAAC+TGG - chr8.1:34438765-34438784 None:intergenic 35.0%
AATATGATTGCTGGGAAACT+AGG + chr8.1:34438252-34438271 MS.gene008793:CDS 35.0%
AATGCTAATGGTACATCTTC+TGG - chr8.1:34436824-34436843 None:intergenic 35.0%
ACAGATCTGTTGAAGAACTT+TGG + chr8.1:34438844-34438863 MS.gene008793:CDS 35.0%
ACCTAACTTCTCCATCTATA+TGG + chr8.1:34437365-34437384 MS.gene008793:intron 35.0%
AGAAGATGTACCATTAGCAT+TGG + chr8.1:34436823-34436842 MS.gene008793:CDS 35.0%
AGACTTGAAAACTTACAGAG+AGG - chr8.1:34438003-34438022 None:intergenic 35.0%
AGTATGAATCTATAAGGCTG+AGG + chr8.1:34438714-34438733 MS.gene008793:intron 35.0%
ATGAATCATAGACACAGACA+AGG - chr8.1:34436719-34436738 None:intergenic 35.0%
ATTAATGATCAGAGAACTGG+GGG - chr8.1:34436977-34436996 None:intergenic 35.0%
ATTGATTGTGCTCAAGTCTA+TGG + chr8.1:34436311-34436330 MS.gene008793:CDS 35.0%
ATTTCTCTTCCAAGAAGTTG+GGG + chr8.1:34437870-34437889 MS.gene008793:CDS 35.0%
CAATTTCTCTTCCAAGAAGT+TGG + chr8.1:34437868-34437887 MS.gene008793:CDS 35.0%
CAGATCTGTTGAAGAACTTT+GGG + chr8.1:34438845-34438864 MS.gene008793:CDS 35.0%
CATCTGATTGCAAAATTTGG+TGG + chr8.1:34437652-34437671 MS.gene008793:intron 35.0%
CATTAGAGGGAAAATAGGTT+TGG - chr8.1:34438626-34438645 None:intergenic 35.0%
CCAGCAATCATATTAAGAAC+TGG - chr8.1:34438246-34438265 None:intergenic 35.0%
CCAGTTCTTAATATGATTGC+TGG + chr8.1:34438243-34438262 MS.gene008793:CDS 35.0%
CCTAACTTCTCCATCTATAT+GGG + chr8.1:34437366-34437385 MS.gene008793:intron 35.0%
CGTGATTTCTGTAATTCCAA+AGG + chr8.1:34437971-34437990 MS.gene008793:CDS 35.0%
CTTACATATAGCTGATGACA+TGG - chr8.1:34438556-34438575 None:intergenic 35.0%
CTTGCTTCATTTGTACTCTT+GGG - chr8.1:34438336-34438355 None:intergenic 35.0%
GTTTAGGGATATTCACCTTT+GGG + chr8.1:34438177-34438196 MS.gene008793:intron 35.0%
TACATGGAAAGGATGTTTCT+TGG - chr8.1:34437045-34437064 None:intergenic 35.0%
TCAACAGGTAAAATGCTTGA+TGG + chr8.1:34438425-34438444 MS.gene008793:intron 35.0%
TGAAACAAACCAGAGTTTAG+AGG - chr8.1:34436497-34436516 None:intergenic 35.0%
TGTGACACTTAATATGAGAC+GGG - chr8.1:34437251-34437270 None:intergenic 35.0%
TGTTTAGGGATATTCACCTT+TGG + chr8.1:34438176-34438195 MS.gene008793:intron 35.0%
TTATAGTTGTCAAGTCTGCA+AGG - chr8.1:34437517-34437536 None:intergenic 35.0%
! ACAGTGGCTTTTATTGTTTC+AGG + chr8.1:34438773-34438792 MS.gene008793:intron 35.0%
! CACTAAAGTACCCATATAGA+TGG - chr8.1:34437379-34437398 None:intergenic 35.0%
! CGATATTTAAGATGAGATGG+AGG + chr8.1:34437470-34437489 MS.gene008793:intron 35.0%
!! ATTGTCCAGTTTTATGACAG+TGG + chr8.1:34438757-34438776 MS.gene008793:intron 35.0%
AAAGTCCTGTCCAATGCTAA+TGG - chr8.1:34436836-34436855 None:intergenic 40.0%
AAATCCTATTGTACACGGCT+TGG + chr8.1:34437127-34437146 MS.gene008793:intron 40.0%
AATGTAATCACTTGTGTCGG+TGG - chr8.1:34436632-34436651 None:intergenic 40.0%
ATAGACACAGACAAGGACAT+CGG - chr8.1:34436712-34436731 None:intergenic 40.0%
CATATAGCTGATGACATGGA+AGG - chr8.1:34438552-34438571 None:intergenic 40.0%
CCCATATAGATGGAGAAGTT+AGG - chr8.1:34437369-34437388 None:intergenic 40.0%
CCTACTGATCCTTTCTTCAT+CGG - chr8.1:34437749-34437768 None:intergenic 40.0%
CCTTGCTTCATTTGTACTCT+TGG - chr8.1:34438337-34438356 None:intergenic 40.0%
CGATTCTTCAATCTCAACAC+CGG + chr8.1:34436078-34436097 MS.gene008793:CDS 40.0%
CTTGAAAACTTACAGAGAGG+TGG - chr8.1:34438000-34438019 None:intergenic 40.0%
CTTGAGCACAATCAATGTGA+CGG - chr8.1:34436307-34436326 None:intergenic 40.0%
GCACACAATCTTAAACCCTT+AGG - chr8.1:34436778-34436797 None:intergenic 40.0%
GCTGAGGTTATTTACTTCCA+TGG + chr8.1:34438730-34438749 MS.gene008793:intron 40.0%
TAGTGAAACGCGAAGATTTG+TGG + chr8.1:34436467-34436486 MS.gene008793:CDS 40.0%
TCCATCCCCAAAACATTAGA+GGG - chr8.1:34438639-34438658 None:intergenic 40.0%
TGAAGTACAGACACTACTGA+TGG + chr8.1:34436586-34436605 MS.gene008793:intron 40.0%
TGTGCATGTGTAAATCGATG+AGG - chr8.1:34436194-34436213 None:intergenic 40.0%
TGTTTCAGGCAAGATTACTC+CGG + chr8.1:34438787-34438806 MS.gene008793:intron 40.0%
TTATCCAAGCCGTGTACAAT+AGG - chr8.1:34437134-34437153 None:intergenic 40.0%
TTTCTCTTCCAAGAAGTTGG+GGG + chr8.1:34437871-34437890 MS.gene008793:CDS 40.0%
! AAATGCTTGATGGTTTCCCT+TGG + chr8.1:34438435-34438454 MS.gene008793:intron 40.0%
! ATGTACCATTAGCATTGGAC+AGG + chr8.1:34436828-34436847 MS.gene008793:CDS 40.0%
! CCAAGAGTACAAATGAAGCA+AGG + chr8.1:34438334-34438353 MS.gene008793:CDS 40.0%
! TCTGTTGAAGAACTTTGGGA+TGG + chr8.1:34438849-34438868 MS.gene008793:CDS 40.0%
! TGTGGATTACCTCTAAACTC+TGG + chr8.1:34436485-34436504 MS.gene008793:CDS 40.0%
! TTCTTCTTTTGCAGATCCAC+TGG + chr8.1:34437717-34437736 MS.gene008793:intron 40.0%
! TTTAAGATTGTGTGCACTGC+AGG + chr8.1:34436783-34436802 MS.gene008793:intron 40.0%
!! AATGACATCACTTTGAAGCC+AGG - chr8.1:34438217-34438236 None:intergenic 40.0%
AACCTAACTTAGCCAGCACA+TGG + chr8.1:34437792-34437811 MS.gene008793:CDS 45.0%
CAGCATATGCTGCATTGCTT+GGG + chr8.1:34437572-34437591 MS.gene008793:intron 45.0%
CATTCCACTTGATTGACAGC+AGG - chr8.1:34437923-34437942 None:intergenic 45.0%
CCGATGAAGAAAGGATCAGT+AGG + chr8.1:34437746-34437765 MS.gene008793:CDS 45.0%
CTCCATCCCCAAAACATTAG+AGG - chr8.1:34438640-34438659 None:intergenic 45.0%
GCATGTGTAAATCGATGAGG+TGG - chr8.1:34436191-34436210 None:intergenic 45.0%
GTACAGACACTACTGATGGA+AGG + chr8.1:34436590-34436609 MS.gene008793:intron 45.0%
GTTTCAGGCAAGATTACTCC+GGG + chr8.1:34438788-34438807 MS.gene008793:intron 45.0%
TAACTTAGCCAGCACATGGA+AGG + chr8.1:34437796-34437815 MS.gene008793:CDS 45.0%
TCAAGTCTATGGCAACGAGA+AGG + chr8.1:34436322-34436341 MS.gene008793:CDS 45.0%
TTTCAGGCAAGATTACTCCG+GGG + chr8.1:34438789-34438808 MS.gene008793:intron 45.0%
! CATGAACAAATGAAGCACCC+CGG - chr8.1:34438809-34438828 None:intergenic 45.0%
! TTTGAAGCCAGGTTGTTCCA+GGG - chr8.1:34438206-34438225 None:intergenic 45.0%
!! ATGGAAGCACTCTATGACTC+AGG + chr8.1:34437821-34437840 MS.gene008793:CDS 45.0%
!! TTCCATGTGCTGGCTAAGTT+AGG - chr8.1:34437797-34437816 None:intergenic 45.0%
!!! ATGTTTTGGGGATGGAGAGT+TGG + chr8.1:34438643-34438662 MS.gene008793:intron 45.0%
!!! TCCCTCTAATGTTTTGGGGA+TGG + chr8.1:34438635-34438654 MS.gene008793:intron 45.0%
AAGTGGAATGCCATCCTTCC+TGG + chr8.1:34437933-34437952 MS.gene008793:CDS 50.0%
AGCACTCTATGACTCAGGCA+AGG + chr8.1:34437826-34437845 MS.gene008793:CDS 50.0%
AGTCTATGGCAACGAGAAGG+AGG + chr8.1:34436325-34436344 MS.gene008793:CDS 50.0%
CCAAGCAATGCAGCATATGC+TGG - chr8.1:34437574-34437593 None:intergenic 50.0%
CCAGCATATGCTGCATTGCT+TGG + chr8.1:34437571-34437590 MS.gene008793:intron 50.0%
CTTCGCTGGGGATTGCAAAT+GGG + chr8.1:34438297-34438316 MS.gene008793:CDS 50.0%
GAGCAAATCCCCCAACTTCT+TGG - chr8.1:34437882-34437901 None:intergenic 50.0%
GATCCTTTCTTCATCGGAGC+AGG - chr8.1:34437743-34437762 None:intergenic 50.0%
GATGAGGTGGTGAACCTTGA+TGG - chr8.1:34436178-34436197 None:intergenic 50.0%
TACAGAGAGGTGGACACCTT+TGG - chr8.1:34437990-34438009 None:intergenic 50.0%
TCCACTTGATTGACAGCAGG+AGG - chr8.1:34437920-34437939 None:intergenic 50.0%
TCCTCCTGCTGTCAATCAAG+TGG + chr8.1:34437916-34437935 MS.gene008793:CDS 50.0%
TCTATGACTCAGGCAAGGCA+CGG + chr8.1:34437831-34437850 MS.gene008793:CDS 50.0%
TCTTCGCTGGGGATTGCAAA+TGG + chr8.1:34438296-34438315 MS.gene008793:CDS 50.0%
TGCTCAGGTATCTCTTCGCT+GGG + chr8.1:34438284-34438303 MS.gene008793:CDS 50.0%
TTCCATTGCCTTCCATGTGC+TGG - chr8.1:34437807-34437826 None:intergenic 50.0%
TTGAAGCCAGGTTGTTCCAG+GGG - chr8.1:34438205-34438224 None:intergenic 50.0%
! TATTCACCTTTGGGTTCCCC+TGG + chr8.1:34438186-34438205 MS.gene008793:CDS 50.0%
!! CTTTGAAGCCAGGTTGTTCC+AGG - chr8.1:34438207-34438226 None:intergenic 50.0%
ACTAGGCAAGACTCCTGCTC+AGG + chr8.1:34438269-34438288 MS.gene008793:CDS 55.0%
AGCCAGCACATGGAAGGCAA+TGG + chr8.1:34437802-34437821 MS.gene008793:CDS 55.0%
AGGTACCTAAGCCGACGGAA+GGG - chr8.1:34436113-34436132 None:intergenic 55.0%
CAGCGAAGAGATACCTGAGC+AGG - chr8.1:34438285-34438304 None:intergenic 55.0%
CTATGACTCAGGCAAGGCAC+GGG + chr8.1:34437832-34437851 MS.gene008793:CDS 55.0%
CTGCTCAGGTATCTCTTCGC+TGG + chr8.1:34438283-34438302 MS.gene008793:CDS 55.0%
GAGGTGGTGAACCTTGATGG+CGG - chr8.1:34436175-34436194 None:intergenic 55.0%
GCTCAGGTATCTCTTCGCTG+GGG + chr8.1:34438285-34438304 MS.gene008793:CDS 55.0%
GTTGTTCCAGGGGAACCCAA+AGG - chr8.1:34438195-34438214 None:intergenic 55.0%
TAAGCCGACGGAAGGGATCT+TGG - chr8.1:34436106-34436125 None:intergenic 55.0%
TGGAATGCCATCCTTCCTGG+AGG + chr8.1:34437936-34437955 MS.gene008793:CDS 55.0%
TGGCCTGCTCCGATGAAGAA+AGG + chr8.1:34437737-34437756 MS.gene008793:CDS 55.0%
! GAAGTTGGGGGATTTGCTCG+AGG + chr8.1:34437883-34437902 MS.gene008793:CDS 55.0%
!! AAGATCCCTTCCGTCGGCTT+AGG + chr8.1:34436105-34436124 MS.gene008793:CDS 55.0%
AGCTTGTCCTGCCTCCAGGA+AGG - chr8.1:34437950-34437969 None:intergenic 60.0%
ATGCCATCCTTCCTGGAGGC+AGG + chr8.1:34437940-34437959 MS.gene008793:CDS 60.0%
CAGGTACCTAAGCCGACGGA+AGG - chr8.1:34436114-34436133 None:intergenic 60.0%
CTGCCAGGTACCTAAGCCGA+CGG - chr8.1:34436118-34436137 None:intergenic 60.0%
GACGGAAGGGATCTTGGCTC+CGG - chr8.1:34436100-34436119 None:intergenic 60.0%
GGAGCCAAGATCCCTTCCGT+CGG + chr8.1:34436099-34436118 MS.gene008793:CDS 60.0%
TCTTCATCGGAGCAGGCCAG+TGG - chr8.1:34437736-34437755 None:intergenic 60.0%
TGGGTTCCCCTGGAACAACC+TGG + chr8.1:34438196-34438215 MS.gene008793:CDS 60.0%
TGTCCTGCCTCCAGGAAGGA+TGG - chr8.1:34437946-34437965 None:intergenic 60.0%
TTGTGCGACGAGGCCAGGAT+CGG - chr8.1:34436142-34436161 None:intergenic 60.0%
! TCAGGCAAGGCACGGGCTAT+AGG + chr8.1:34437839-34437858 MS.gene008793:CDS 60.0%
!! AACCTTGATGGCGGCAGCGA+CGG - chr8.1:34436166-34436185 None:intergenic 60.0%
!! CTTCCGTCGGCTTAGGTACC+TGG + chr8.1:34436112-34436131 MS.gene008793:CDS 60.0%
ACGCAGCTTGTCCTGCCTCC+AGG - chr8.1:34437954-34437973 None:intergenic 65.0%
GGTACCTGGCAGTCCGATCC+TGG + chr8.1:34436126-34436145 MS.gene008793:CDS 65.0%
ACGGCTTGTGCGACGAGGCC+AGG - chr8.1:34436147-34436166 None:intergenic 70.0%
AGCCGTCGCTGCCGCCATCA+AGG + chr8.1:34436161-34436180 MS.gene008793:CDS 70.0%
CAGCGACGGCTTGTGCGACG+AGG - chr8.1:34436152-34436171 None:intergenic 70.0%
GAGGCCAGGATCGGACTGCC+AGG - chr8.1:34436133-34436152 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 34436063 34438881 34436063 ID=MS.gene008793
chr8.1 mRNA 34436063 34438881 34436063 ID=MS.gene008793.t1;Parent=MS.gene008793
chr8.1 exon 34436063 34436182 34436063 ID=MS.gene008793.t1.exon1;Parent=MS.gene008793.t1
chr8.1 CDS 34436063 34436182 34436063 ID=cds.MS.gene008793.t1;Parent=MS.gene008793.t1
chr8.1 exon 34436296 34436346 34436296 ID=MS.gene008793.t1.exon2;Parent=MS.gene008793.t1
chr8.1 CDS 34436296 34436346 34436296 ID=cds.MS.gene008793.t1;Parent=MS.gene008793.t1
chr8.1 exon 34436430 34436506 34436430 ID=MS.gene008793.t1.exon3;Parent=MS.gene008793.t1
chr8.1 CDS 34436430 34436506 34436430 ID=cds.MS.gene008793.t1;Parent=MS.gene008793.t1
chr8.1 exon 34436805 34436892 34436805 ID=MS.gene008793.t1.exon4;Parent=MS.gene008793.t1
chr8.1 CDS 34436805 34436892 34436805 ID=cds.MS.gene008793.t1;Parent=MS.gene008793.t1
chr8.1 exon 34437731 34438006 34437731 ID=MS.gene008793.t1.exon5;Parent=MS.gene008793.t1
chr8.1 CDS 34437731 34438006 34437731 ID=cds.MS.gene008793.t1;Parent=MS.gene008793.t1
chr8.1 exon 34438183 34438431 34438183 ID=MS.gene008793.t1.exon6;Parent=MS.gene008793.t1
chr8.1 CDS 34438183 34438431 34438183 ID=cds.MS.gene008793.t1;Parent=MS.gene008793.t1
chr8.1 exon 34438795 34438881 34438795 ID=MS.gene008793.t1.exon7;Parent=MS.gene008793.t1
chr8.1 CDS 34438795 34438881 34438795 ID=cds.MS.gene008793.t1;Parent=MS.gene008793.t1
Gene Sequence

>MS.gene008793

ATGTCGAACGAGATTCGATTCTTCAATCTCAACACCGGAGCCAAGATCCCTTCCGTCGGCTTAGGTACCTGGCAGTCCGATCCTGGCCTCGTCGCACAAGCCGTCGCTGCCGCCATCAAGGTTCACCACCTCATCGATTTACACATGCACATTTTTCGAAATCTCATTTTACACAATCATATTTGATTTTATATTTGATTTTGATTTTGATCAATCATTTTGATATATTACAGGCTGGTTACCGTCACATTGATTGTGCTCAAGTCTATGGCAACGAGAAGGAGGTAATTCTTTCGTTGTTTGTTTTTGCAATGATATTGCAATTTCATGTGTGAATGAAATGTTTCATTCATTCTTTCTGTTGTAGATTGGCTCCATGTTGAAGAAATTGTTTAACGAAGGCGTAGTGAAACGCGAAGATTTGTGGATTACCTCTAAACTCTGGTTTGTTTCATTAATTAATTTTGTTTCCATGTTTTAGCTAATTCAATTATTTGGTAGAATAGGTTTTTCAACTCTATATTGAAGTACAGACACTACTGATGGAAGGTGTGTCGTGTCTGACACCACCGACACAAGTGATTACATTGAATTATGTCACTGTTTCAAATTATTATTGGTGTTGACGTGTCAGTGTTTGTTGTGTCCGATGTCCTTGTCTGTGTCTATGATTCATAATTTTGAATCTATTAGTTTTCTTTAATGTTCAGAACCTAAGGGTTTAAGATTGTGTGCACTGCAGGAATACTGATCATGCTCCAGAAGATGTACCATTAGCATTGGACAGGACTTTGACTGACTTACAGCTTGATTATGTTGATTTGTATCTTGTATGTAATAATATTTCACTCAATCTTTAGATATTCTTTAACTACTTTGTTAAAATTTTATGCATAATTATGATTTTACTACCCCCAGTTCTCTGATCATTAATTTCTGTCAATGTTTAAATTGAAAATGAAATCTGAAATATGAATTTCCAAGAAACATCCTTTCCATGTAGTCTTTTAGTTATGAAATTGTGAGGTTAATTAATTACGGACTGCATTTTTTTATTGTAGGAAAAATCCTATTGTACACGGCTTGGATAATAACTTAATTGCAGAATGTATGATTGTTTGGAAAATGCTATGTGTTTATCTTTTTCAATTCTAAACTTTTCTTACATAGCAACATGGAAATACTCCCGTCTCATATTAAGTGTCACATTTGTAGTATTTGCTTATCTCATTATTTATCACTTTAGAATATCAATGAAACTCTAATTACTTAATAGACCTTCAAATTAGAGTTTCTCAATCAACCTAACTTCTCCATCTATATGGGTACTTTAGTGAATGAAGTTCATTTTTATGATAGAAACTAGTACACTACATGATTTTCTTATGAAATGTGTGTAATCTTAAACGATATTTAAGATGAGATGGAGGGAGTAGTTGTTAAGCTATGCGCCTTGCAGACTTGACAACTATAAGTGCTTTTAATTCTAAGGAATTTAATTTGCACTTCCAGCATATGCTGCATTGCTTGGGTGCTATTATTTTATTCATTTTTTTATGCTTTCCTTCTGATGCATGTAAGATTTATTTCATCTGATTGCAAAATTTGGTGGTTTAATATATTATTTAGTACATTCTTAACTGTTTATTGATGATTCTTCTTTTGCAGATCCACTGGCCTGCTCCGATGAAGAAAGGATCAGTAGGCTTCAAAGCTGAAAATCTAGTGCAACCTAACTTAGCCAGCACATGGAAGGCAATGGAAGCACTCTATGACTCAGGCAAGGCACGGGCTATAGGTGTAAGCAATTTCTCTTCCAAGAAGTTGGGGGATTTGCTCGAGGTTGCTCGAGTTCCTCCTGCTGTCAATCAAGTGGAATGCCATCCTTCCTGGAGGCAGGACAAGCTGCGTGATTTCTGTAATTCCAAAGGTGTCCACCTCTCTGTAAGTTTTCAAGTCTTGAATGATCATTATTTTGTTTCTGCACATTACATTGGCTATTTTCATGATTTTTTTTTTTGAGAGGATCTTTTCCGTTTGTTAAAACTTGAAATGAACCCTTATTATTATATTTTTGAAGAATTTTCTCTAATTTAAAATGTGGTACTTTTAATGTTTAGGGATATTCACCTTTGGGTTCCCCTGGAACAACCTGGCTTCAAAGTGATGTCATTAAGCATCCAGTTCTTAATATGATTGCTGGGAAACTAGGCAAGACTCCTGCTCAGGTATCTCTTCGCTGGGGATTGCAAATGGGTCATAGTGTACTTCCCAAGAGTACAAATGAAGCAAGGATAAAAGAAAATTTTGATGTTTTTGATTGGGCTATACCTGAAGACTTGTTTGCTAAATTTTCTGAGATTCAACAGGTAAAATGCTTGATGGTTTCCCTTGGTCTTTCTGATTTTAAGAACAGAATATATTAACTATATTGATATTCAGCTCTAGTTGTGAAGCAGCATAGCTAAAAATATTGTTAGTCATCTCCTTCCATGTCATCAGCTATATGTAAGAATAAGACTTGATTTTGGATTCTTAATTTCCAATTAATATTGCTAACCCAAACCTATTTTCCCTCTAATGTTTTGGGGATGGAGAGTTGGAATTCGTTTTTACTTGAATCTAGATAAGCCTGTTGTTAGTTATTTGACAGTATGAATCTATAAGGCTGAGGTTATTTACTTCCATGGAAACATTGTCCAGTTTTATGACAGTGGCTTTTATTGTTTCAGGCAAGATTACTCCGGGGTGCTTCATTTGTTCATGAAACTTATGGTGGCTACAGATCTGTTGAAGAACTTTGGGATGGTGAAATCTGA

Protein sequence

>MS.gene008793.t1

MSNEIRFFNLNTGAKIPSVGLGTWQSDPGLVAQAVAAAIKAGYRHIDCAQVYGNEKEIGSMLKKLFNEGVVKREDLWITSKLWNTDHAPEDVPLALDRTLTDLQLDYVDLYLIHWPAPMKKGSVGFKAENLVQPNLASTWKAMEALYDSGKARAIGVSNFSSKKLGDLLEVARVPPAVNQVECHPSWRQDKLRDFCNSKGVHLSGYSPLGSPGTTWLQSDVIKHPVLNMIAGKLGKTPAQVSLRWGLQMGHSVLPKSTNEARIKENFDVFDWAIPEDLFAKFSEIQQARLLRGASFVHETYGGYRSVEELWDGEI