AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056488


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056488.t1 MTR_8g070115 98.095 315 6 0 1 315 1 315 0.0 643
MS.gene056488.t1 MTR_8g070095 82.555 321 48 3 1 315 1 319 0.0 550
MS.gene056488.t1 MTR_4g021350 71.111 315 89 1 1 315 1 313 1.54e-163 458
MS.gene056488.t1 MTR_4g021450 68.690 313 87 2 2 314 3 304 1.49e-148 419
MS.gene056488.t1 MTR_4g021350 72.822 287 76 1 1 287 1 285 1.64e-148 419
MS.gene056488.t1 MTR_4g021410 67.732 313 90 2 2 314 3 304 9.27e-146 412
MS.gene056488.t1 MTR_7g063580 64.839 310 108 1 6 315 46 354 1.93e-140 401
MS.gene056488.t1 MTR_4g021410 68.478 276 76 2 39 314 3 267 2.96e-127 364
MS.gene056488.t1 MTR_4g021450 67.782 239 66 2 76 314 1 228 6.59e-105 306
MS.gene056488.t1 MTR_4g021410 67.364 239 67 2 76 314 1 228 1.07e-103 303
MS.gene056488.t1 MTR_4g072320 45.955 309 160 4 10 315 11 315 2.01e-90 272
MS.gene056488.t1 MTR_4g021450 67.196 189 58 1 126 314 1 185 1.32e-89 265
MS.gene056488.t1 MTR_4g036845 42.947 319 171 5 2 315 3 315 4.45e-89 269
MS.gene056488.t1 MTR_4g072350 44.025 318 171 4 3 314 4 320 4.01e-84 256
MS.gene056488.t1 MTR_4g072360 43.730 311 168 5 10 314 11 320 1.27e-81 250
MS.gene056488.t1 MTR_7g070500 44.268 314 168 5 4 314 11 320 4.74e-79 243
MS.gene056488.t1 MTR_6g073110 39.159 309 181 4 10 312 11 318 9.24e-77 238
MS.gene056488.t1 MTR_0374s0050 39.088 307 172 4 14 314 18 315 1.78e-75 234
MS.gene056488.t1 MTR_7g070500 44.523 283 152 3 4 285 11 289 1.54e-71 223
MS.gene056488.t1 MTR_3g083130 40.656 305 167 5 15 314 20 315 9.23e-71 222
MS.gene056488.t1 MTR_5g097900 42.177 294 159 4 9 295 13 302 1.91e-64 206
MS.gene056488.t1 MTR_5g097910 42.177 294 159 4 9 295 13 302 2.15e-64 206
MS.gene056488.t1 MTR_5g097940 42.177 294 159 4 9 295 13 302 2.15e-64 206
MS.gene056488.t1 MTR_4g072060 40.780 282 153 4 8 277 3 282 1.20e-63 204
MS.gene056488.t1 MTR_6g072650 40.000 150 67 2 165 314 10 136 2.45e-31 114
MS.gene056488.t1 MTR_6g072710 39.640 111 67 0 183 293 1 111 3.60e-24 95.1
MS.gene056488.t1 MTR_4g021425 50.000 58 29 0 249 306 1 58 8.53e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056488.t1 AT2G37770 77.460 315 71 0 1 315 1 315 0.0 523
MS.gene056488.t1 AT2G37790 76.825 315 72 1 1 315 1 314 0.0 510
MS.gene056488.t1 AT3G53880 71.429 315 90 0 1 315 1 315 3.66e-167 467
MS.gene056488.t1 AT2G37760 66.349 315 102 1 1 315 1 311 5.61e-157 441
MS.gene056488.t1 AT2G37760 66.349 315 102 1 1 315 1 311 5.61e-157 441
MS.gene056488.t1 AT3G53880 71.528 288 82 0 1 288 1 288 9.23e-151 426
MS.gene056488.t1 AT2G37760 67.354 291 91 1 1 291 1 287 1.10e-144 409
MS.gene056488.t1 AT2G37760 67.354 291 91 1 1 291 1 287 1.10e-144 409
MS.gene056488.t1 AT2G37760 67.820 289 89 1 1 289 1 285 2.15e-144 409
MS.gene056488.t1 AT2G37760 66.538 260 87 0 56 315 6 265 1.65e-128 367
MS.gene056488.t1 AT2G37760 66.538 260 87 0 56 315 6 265 1.65e-128 367
MS.gene056488.t1 AT2G37770 75.229 218 53 1 1 217 1 218 3.42e-118 342
MS.gene056488.t1 AT5G01670 46.452 310 159 5 8 314 16 321 4.89e-90 271
MS.gene056488.t1 AT5G62420 44.695 311 165 4 10 315 8 316 3.02e-89 269
MS.gene056488.t1 AT5G01670 42.730 337 159 6 8 314 16 348 5.42e-84 257
MS.gene056488.t1 AT1G59960 40.584 308 173 7 16 315 21 326 1.49e-71 224
MS.gene056488.t1 AT2G21250 40.780 282 153 4 8 277 3 282 3.88e-71 223
MS.gene056488.t1 AT2G21260 38.742 302 170 5 8 296 3 302 1.08e-68 216
MS.gene056488.t1 AT1G59950 42.208 308 168 7 16 315 15 320 6.86e-68 215
MS.gene056488.t1 AT2G21250 41.981 212 112 2 8 210 3 212 4.04e-54 177
MS.gene056488.t1 AT2G21260 35.371 229 133 5 81 296 8 234 5.01e-40 140
MS.gene056488.t1 AT1G06690 26.349 315 163 15 15 277 57 354 7.78e-15 74.7

Find 94 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCTTCATTTGTACTCT+TGG 0.238563 8.3:-32388797 None:intergenic
TCATTTGTTCATGAAACTTA+TGG 0.293075 8.3:+32389279 MS.gene056488:CDS
AAGTGGAATGCCATCCTTCC+TGG 0.316899 8.3:+32388398 MS.gene056488:CDS
CTTTGAAGCCAGGTTGTTCC+AGG 0.323565 8.3:-32388667 None:intergenic
ATTGATTGTGCTCAAGTCTA+TGG 0.334419 8.3:+32386787 MS.gene056488:CDS
CCAGTTCTTAATATGATTGC+TGG 0.336431 8.3:+32388706 MS.gene056488:CDS
CAGATCTGTTGAAGAACTTT+GGG 0.345765 8.3:+32389308 MS.gene056488:CDS
GTTTAGGGATATTCACCTTT+GGG 0.352925 8.3:+32388640 MS.gene056488:intron
TGAAACAAACCAGAGTTTAG+AGG 0.353779 8.3:-32386970 None:intergenic
CTTGCTTCATTTGTACTCTT+GGG 0.358576 8.3:-32388796 None:intergenic
TTCCATGTGCTGGCTAAGTT+AGG 0.363519 8.3:-32388259 None:intergenic
TTCCATTGCCTTCCATGTGC+TGG 0.365867 8.3:-32388269 None:intergenic
AATGCTAGTGGTACATCTTC+TGG 0.376017 8.3:-32387275 None:intergenic
TGTTTAGGGATATTCACCTT+TGG 0.386980 8.3:+32388639 MS.gene056488:intron
CTTCCGTCGGCTTAGGTACC+TGG 0.392072 8.3:+32386596 MS.gene056488:CDS
AATTTCTCTTCCAAGAAGTT+GGG 0.392264 8.3:+32388334 MS.gene056488:CDS
ACAGATCTGTTGAAGAACTT+TGG 0.394762 8.3:+32389307 MS.gene056488:CDS
CAATTTCTCTTCCAAGAAGT+TGG 0.394997 8.3:+32388333 MS.gene056488:CDS
TACAGAGAGGTGGACACCTT+TGG 0.404335 8.3:-32388452 None:intergenic
AATTTAGCAAACAAATCTTC+AGG 0.406773 8.3:-32388856 None:intergenic
CTGCTCAGATATCTCTTCGC+TGG 0.411123 8.3:+32388746 MS.gene056488:CDS
TGCTCAGATATCTCTTCGCT+GGG 0.416487 8.3:+32388747 MS.gene056488:CDS
TAGTGAAACGCGAAGATTTG+TGG 0.416753 8.3:+32386943 MS.gene056488:CDS
TCAGGCAAGGCACGGGCTAT+AGG 0.418687 8.3:+32388304 MS.gene056488:CDS
TCTTCGCTGGGGATTACAAA+TGG 0.421445 8.3:+32388759 MS.gene056488:CDS
AATATGATTGCTGGGAAACT+AGG 0.422619 8.3:+32388715 MS.gene056488:CDS
TAAGCCGACGGAAGGGATCT+TGG 0.423343 8.3:-32386587 None:intergenic
AAGATCCCTTCCGTCGGCTT+AGG 0.429377 8.3:+32386589 MS.gene056488:CDS
CCAGCAATCATATTAAGAAC+TGG 0.429401 8.3:-32388706 None:intergenic
GATGAAATGGAAAACCTTGA+TGG 0.431243 8.3:-32386659 None:intergenic
TATTCACCTTTGGGTTCCCC+TGG 0.441850 8.3:+32388649 MS.gene056488:CDS
GATCCTTTCTTCATCGGAGC+AGG 0.456423 8.3:-32388205 None:intergenic
ACGGCTTGTGCGACGAGGCC+AGG 0.461216 8.3:-32386628 None:intergenic
AACCTTGATGGCGGCAGCGA+CGG 0.472779 8.3:-32386647 None:intergenic
GGTACCTGGCAATCCGATCC+TGG 0.476142 8.3:+32386610 MS.gene056488:CDS
TGGGTTCCCCTGGAACAACC+TGG 0.482642 8.3:+32388659 MS.gene056488:CDS
ATGCCATCCTTCCTGGAGGC+AGG 0.488471 8.3:+32388405 MS.gene056488:CDS
CTTCGCTGGGGATTACAAAT+GGG 0.491206 8.3:+32388760 MS.gene056488:CDS
GACGGAAGGGATCTTGGCTC+CGG 0.493320 8.3:-32386581 None:intergenic
ACGCAGCTTGTCCTGCCTCC+AGG 0.505501 8.3:-32388416 None:intergenic
AGCCGTCGCTGCCGCCATCA+AGG 0.506915 8.3:+32386645 MS.gene056488:CDS
AATGACATCACTTTGAAGCC+AGG 0.508613 8.3:-32388677 None:intergenic
GTTTCAGGCAAGATTACTCC+GGG 0.509685 8.3:+32389251 MS.gene056488:intron
GAGGCCAGGATCGGATTGCC+AGG 0.520325 8.3:-32386614 None:intergenic
TGGCCTGCTCCGATGAAGAA+AGG 0.522104 8.3:+32388202 MS.gene056488:CDS
CCTACTGATCCTTTCTTCAT+CGG 0.525903 8.3:-32388211 None:intergenic
CAGCGAAGAGATATCTGAGC+AGG 0.527202 8.3:-32388745 None:intergenic
CAGTTCTTAATATGATTGCT+GGG 0.533432 8.3:+32388707 MS.gene056488:CDS
TGTCCTGCCTCCAGGAAGGA+TGG 0.536506 8.3:-32388408 None:intergenic
TCCTCCTGCTGTCAATCAAG+TGG 0.537498 8.3:+32388381 MS.gene056488:CDS
ATGGAAACACTCTATGACTC+AGG 0.543898 8.3:+32388286 MS.gene056488:CDS
AGAAGATGTACCACTAGCAT+TGG 0.544022 8.3:+32387277 MS.gene056488:CDS
CATTCCACTTGATTGACAGC+AGG 0.544893 8.3:-32388385 None:intergenic
TGTTTCAGGCAAGATTACTC+CGG 0.546358 8.3:+32389250 MS.gene056488:intron
TTGTGCGACGAGGCCAGGAT+CGG 0.546361 8.3:-32386623 None:intergenic
TGTGGATTACCTCTAAACTC+TGG 0.549050 8.3:+32386961 MS.gene056488:CDS
ATTTCTCTTCCAAGAAGTTG+GGG 0.553939 8.3:+32388335 MS.gene056488:CDS
TCTTCATCGGAGCAGGCCAG+TGG 0.569231 8.3:-32388198 None:intergenic
CGTGATTTCTGTAATTCCAA+AGG 0.569400 8.3:+32388436 MS.gene056488:CDS
ATGTACCACTAGCATTGGAC+AGG 0.570702 8.3:+32387282 MS.gene056488:CDS
TTGAAGAAATTATTTAACGA+AGG 0.573338 8.3:+32386918 MS.gene056488:CDS
TCTATGACTCAGGCAAGGCA+CGG 0.574646 8.3:+32388296 MS.gene056488:CDS
CAGGTACCTAAGCCGACGGA+AGG 0.575856 8.3:-32386595 None:intergenic
TTTGTTCATGAAACTTATGG+TGG 0.577376 8.3:+32389282 MS.gene056488:CDS
CTATGACTCAGGCAAGGCAC+GGG 0.584856 8.3:+32388297 MS.gene056488:CDS
TAACTTAGCCAGCACATGGA+AGG 0.589109 8.3:+32388261 MS.gene056488:CDS
ATAAGTTTCATGAACAAATG+AGG 0.589589 8.3:-32389277 None:intergenic
TCCACTTGATTGACAGCAGG+AGG 0.589599 8.3:-32388382 None:intergenic
TTTGAAGCCAGGTTGTTCCA+GGG 0.593768 8.3:-32388666 None:intergenic
TTGAAGCCAGGTTGTTCCAG+GGG 0.595459 8.3:-32388665 None:intergenic
CAGCGACGGCTTGTGCGACG+AGG 0.599107 8.3:-32386633 None:intergenic
CGATTCTTCAATCTCAACAC+CGG 0.603511 8.3:+32386562 MS.gene056488:CDS
AGCTTGTCCTGCCTCCAGGA+AGG 0.607904 8.3:-32388412 None:intergenic
CTTGAAAACTTACAGAGAGG+TGG 0.612402 8.3:-32388462 None:intergenic
CCGATGAAGAAAGGATCAGT+AGG 0.612768 8.3:+32388211 MS.gene056488:CDS
AGCCAGCACATGGAAGGCAA+TGG 0.615743 8.3:+32388267 MS.gene056488:CDS
AGTCTATGGCAACGAGAAGG+AGG 0.620984 8.3:+32386801 MS.gene056488:CDS
CCAAGAGTACAAATGAAGCA+AGG 0.630543 8.3:+32388797 MS.gene056488:CDS
TCAAGTCTATGGCAACGAGA+AGG 0.639421 8.3:+32386798 MS.gene056488:CDS
AAAGTCCTGTCCAATGCTAG+TGG 0.640693 8.3:-32387287 None:intergenic
GGAGCCAAGATCCCTTCCGT+CGG 0.642083 8.3:+32386583 MS.gene056488:CDS
TTGCCAGGTACCTAAGCCGA+CGG 0.642200 8.3:-32386599 None:intergenic
AACCTAACTTAGCCAGCACA+TGG 0.643347 8.3:+32388257 MS.gene056488:CDS
CATGAACAAATGAGGCACCC+CGG 0.643553 8.3:-32389269 None:intergenic
CTTGAGCACAATCAATGTGA+CGG 0.651757 8.3:-32386780 None:intergenic
GTTGTTCCAGGGGAACCCAA+AGG 0.652449 8.3:-32388655 None:intergenic
AGGTACCTAAGCCGACGGAA+GGG 0.654265 8.3:-32386594 None:intergenic
AACACTCTATGACTCAGGCA+AGG 0.656592 8.3:+32388291 MS.gene056488:CDS
TTTCTCTTCCAAGAAGTTGG+GGG 0.662698 8.3:+32388336 MS.gene056488:CDS
GAAATGGAAAACCTTGATGG+CGG 0.679860 8.3:-32386656 None:intergenic
TCTGTTGAAGAACTTTGGGA+TGG 0.686727 8.3:+32389312 MS.gene056488:CDS
GCTCAGATATCTCTTCGCTG+GGG 0.714212 8.3:+32388748 MS.gene056488:CDS
TGGAATGCCATCCTTCCTGG+AGG 0.726179 8.3:+32388401 MS.gene056488:CDS
TTTCAGGCAAGATTACTCCG+GGG 0.779869 8.3:+32389252 MS.gene056488:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTCAAAAATATAATAATAA+TGG - chr8.3:32388586-32388605 None:intergenic 10.0%
!!! CATTATTATTATATTTTTGA+AGG + chr8.3:32388584-32388603 MS.gene056488:intron 10.0%
!! AAATTAATGATCAGATAATT+GGG - chr8.3:32387433-32387452 None:intergenic 15.0%
!!! AAAATTTTGATGTTTTTGAT+TGG + chr8.3:32388827-32388846 MS.gene056488:CDS 15.0%
!!! AAATTTTGATGTTTTTGATT+GGG + chr8.3:32388828-32388847 MS.gene056488:CDS 15.0%
!!! ATTTTCAATTTAAACTTTGA+AGG - chr8.3:32387456-32387475 None:intergenic 15.0%
!!! ATTTTCTCTAATTTAAAATG+TGG + chr8.3:32388607-32388626 MS.gene056488:intron 15.0%
!!! TTATTTCAAGTTTTAACAAA+CGG - chr8.3:32388562-32388581 None:intergenic 15.0%
!!! TTTCATGATTTTTTTTTTAG+AGG + chr8.3:32388529-32388548 MS.gene056488:intron 15.0%
!! AGATTCAAAATTATGAATCA+TGG - chr8.3:32387205-32387224 None:intergenic 20.0%
!! ATTCAATTATCTAATAATGC+TGG + chr8.3:32387023-32387042 MS.gene056488:intron 20.0%
!! CAATCAATTTGATATATTAC+AGG + chr8.3:32386750-32386769 MS.gene056488:intron 20.0%
!! GAAATTAATGATCAGATAAT+TGG - chr8.3:32387434-32387453 None:intergenic 20.0%
!! TAATTGAATTAGCTAAAACA+TGG - chr8.3:32387012-32387031 None:intergenic 20.0%
!! TTGAAGAAATTATTTAACGA+AGG + chr8.3:32386918-32386937 MS.gene056488:CDS 20.0%
!!! AATTTTGAATCTATTACCTA+AGG + chr8.3:32387213-32387232 MS.gene056488:intron 20.0%
!!! ATAAGAATAAGACTTGATTT+TGG + chr8.3:32389034-32389053 MS.gene056488:intron 20.0%
!!! ATTTTGAATCTATTACCTAA+GGG + chr8.3:32387214-32387233 MS.gene056488:intron 20.0%
!!! TATAAGTGCTTTTAATTCTA+AGG + chr8.3:32387997-32388016 MS.gene056488:intron 20.0%
! AATTTAGCAAACAAATCTTC+AGG - chr8.3:32388859-32388878 None:intergenic 25.0%
! ATAAGTTTCATGAACAAATG+AGG - chr8.3:32389280-32389299 None:intergenic 25.0%
! ATTGAGAAACTCTAATTTGA+AGG - chr8.3:32387808-32387827 None:intergenic 25.0%
! CTATTAGTGAAACAAGTAAT+TGG - chr8.3:32387784-32387803 None:intergenic 25.0%
! CTTATTTATAGCTGATAACA+TGG - chr8.3:32389019-32389038 None:intergenic 25.0%
! TCATTTGTTCATGAAACTTA+TGG + chr8.3:32389279-32389298 MS.gene056488:CDS 25.0%
! TTCATAACTAAAAGACTACA+TGG - chr8.3:32387515-32387534 None:intergenic 25.0%
! TTTCATCTGATTGCAAAATT+TGG + chr8.3:32388114-32388133 MS.gene056488:intron 25.0%
! TTTGACAGTATGAATCTATA+AGG + chr8.3:32389171-32389190 MS.gene056488:intron 25.0%
!! TATTTTCCCTCTAATGTTTT+GGG + chr8.3:32389093-32389112 MS.gene056488:intron 25.0%
!!! ACTGCATTTTTTTTTACTGT+AGG + chr8.3:32387559-32387578 MS.gene056488:intron 25.0%
!!! TAAATTTTCTGAGATTCAAC+AGG + chr8.3:32388873-32388892 MS.gene056488:CDS 25.0%
!!! TTTGGGTTAGCAATATTAAT+TGG - chr8.3:32389071-32389090 None:intergenic 25.0%
!!! TTTTTTTCTGCACATTACAT+TGG + chr8.3:32388502-32388521 MS.gene056488:intron 25.0%
AACTAAAAGACTACATGGAA+AGG - chr8.3:32387510-32387529 None:intergenic 30.0%
AATTTCTCTTCCAAGAAGTT+GGG + chr8.3:32388334-32388353 MS.gene056488:CDS 30.0%
ACCTAATTTCTCCATCTATA+TGG + chr8.3:32387830-32387849 MS.gene056488:intron 30.0%
AGGAAAAATCATGTTGTACA+CGG + chr8.3:32387579-32387598 MS.gene056488:intron 30.0%
ATGTGACACTTAATATGAGA+CGG - chr8.3:32387709-32387728 None:intergenic 30.0%
ATGTGGTACTTCTAATGTTT+AGG + chr8.3:32388624-32388643 MS.gene056488:intron 30.0%
ATTAGAGGGAAAATAGGTTT+GGG - chr8.3:32389088-32389107 None:intergenic 30.0%
CAAAACATTAGAGGGAAAAT+AGG - chr8.3:32389094-32389113 None:intergenic 30.0%
CAATTTGATATATTACAGGC+TGG + chr8.3:32386754-32386773 MS.gene056488:intron 30.0%
CAGTTCTTAATATGATTGCT+GGG + chr8.3:32388707-32388726 MS.gene056488:CDS 30.0%
CCTAATTTCTCCATCTATAT+GGG + chr8.3:32387831-32387850 MS.gene056488:intron 30.0%
TAAATCTTACATGCATCAGA+AGG - chr8.3:32388094-32388113 None:intergenic 30.0%
TCATTCTTTCTGTTGTAGAT+TGG + chr8.3:32386888-32386907 MS.gene056488:intron 30.0%
TCTAATAATGCTGGTAGAAT+AGG + chr8.3:32387032-32387051 MS.gene056488:intron 30.0%
TGTGGTACTTCTAATGTTTA+GGG + chr8.3:32388625-32388644 MS.gene056488:intron 30.0%
TTGTCAAATGCATGATTGTT+TGG + chr8.3:32387619-32387638 MS.gene056488:intron 30.0%
TTTATAGCTGATAACATGGA+AGG - chr8.3:32389015-32389034 None:intergenic 30.0%
TTTGTTCATGAAACTTATGG+TGG + chr8.3:32389282-32389301 MS.gene056488:CDS 30.0%
! AAACGACATTTAAGATGAGA+TGG + chr8.3:32387932-32387951 MS.gene056488:intron 30.0%
! ACTTTTCTTACATAGCAACA+TGG + chr8.3:32387675-32387694 MS.gene056488:intron 30.0%
! ATTTTCCCTCTAATGTTTTG+GGG + chr8.3:32389094-32389113 MS.gene056488:intron 30.0%
! CTATTTTCCCTCTAATGTTT+TGG + chr8.3:32389092-32389111 MS.gene056488:intron 30.0%
!! CTTTTAGTTATGAAATTGCG+AGG + chr8.3:32387521-32387540 MS.gene056488:intron 30.0%
AAAACTGGACAATGTTTCCA+TGG - chr8.3:32389213-32389232 None:intergenic 35.0%
AAAAGCCACTGTCATAAAAC+TGG - chr8.3:32389228-32389247 None:intergenic 35.0%
AATATGATTGCTGGGAAACT+AGG + chr8.3:32388715-32388734 MS.gene056488:CDS 35.0%
ACAGATCTGTTGAAGAACTT+TGG + chr8.3:32389307-32389326 MS.gene056488:CDS 35.0%
ACTGTCAAAAAACTAGCAAC+AGG - chr8.3:32389160-32389179 None:intergenic 35.0%
AGACTTGAAAACTTACAGAG+AGG - chr8.3:32388468-32388487 None:intergenic 35.0%
ATTGATTGTGCTCAAGTCTA+TGG + chr8.3:32386787-32386806 MS.gene056488:CDS 35.0%
ATTTCTCTTCCAAGAAGTTG+GGG + chr8.3:32388335-32388354 MS.gene056488:CDS 35.0%
CAATTTCTCTTCCAAGAAGT+TGG + chr8.3:32388333-32388352 MS.gene056488:CDS 35.0%
CACTTAAGTACCCATATAGA+TGG - chr8.3:32387844-32387863 None:intergenic 35.0%
CAGATCTGTTGAAGAACTTT+GGG + chr8.3:32389308-32389327 MS.gene056488:CDS 35.0%
CATCTGATTGCAAAATTTGG+TGG + chr8.3:32388117-32388136 MS.gene056488:intron 35.0%
CATTAGAGGGAAAATAGGTT+TGG - chr8.3:32389089-32389108 None:intergenic 35.0%
CCAGCAATCATATTAAGAAC+TGG - chr8.3:32388709-32388728 None:intergenic 35.0%
CCAGTTCTTAATATGATTGC+TGG + chr8.3:32388706-32388725 MS.gene056488:CDS 35.0%
CCCATATAGATGGAGAAATT+AGG - chr8.3:32387834-32387853 None:intergenic 35.0%
CGTGATTTCTGTAATTCCAA+AGG + chr8.3:32388436-32388455 MS.gene056488:CDS 35.0%
CTTAAAACCAGAAAGACCAA+GGG - chr8.3:32388917-32388936 None:intergenic 35.0%
CTTGCTTCATTTGTACTCTT+GGG - chr8.3:32388799-32388818 None:intergenic 35.0%
GATGAAATGGAAAACCTTGA+TGG - chr8.3:32386662-32386681 None:intergenic 35.0%
GCGTGTGAAAATAGATGAAA+TGG - chr8.3:32386675-32386694 None:intergenic 35.0%
GTTTAGGGATATTCACCTTT+GGG + chr8.3:32388640-32388659 MS.gene056488:intron 35.0%
TACATGGAAAGGATGTTTCT+TGG - chr8.3:32387499-32387518 None:intergenic 35.0%
TCAACAGGTAAAATGCTTGA+TGG + chr8.3:32388888-32388907 MS.gene056488:intron 35.0%
TCTTAAAACCAGAAAGACCA+AGG - chr8.3:32388918-32388937 None:intergenic 35.0%
TGAAACAAACCAGAGTTTAG+AGG - chr8.3:32386973-32386992 None:intergenic 35.0%
TGACATAATTCCACTTGTGT+CGG - chr8.3:32387117-32387136 None:intergenic 35.0%
TGTGACACTTAATATGAGAC+GGG - chr8.3:32387708-32387727 None:intergenic 35.0%
TGTTTAGGGATATTCACCTT+TGG + chr8.3:32388639-32388658 MS.gene056488:intron 35.0%
TTATAGTCGTCAAATCTGCA+AGG - chr8.3:32387982-32388001 None:intergenic 35.0%
! ACAGTGGCTTTTATTGTTTC+AGG + chr8.3:32389236-32389255 MS.gene056488:intron 35.0%
! GACATTTAAGATGAGATGGA+GGG + chr8.3:32387936-32387955 MS.gene056488:intron 35.0%
!! ATTGTCCAGTTTTATGACAG+TGG + chr8.3:32389220-32389239 MS.gene056488:intron 35.0%
AAATCATGTTGTACACGGCT+TGG + chr8.3:32387584-32387603 MS.gene056488:intron 40.0%
AATGCTAGTGGTACATCTTC+TGG - chr8.3:32387278-32387297 None:intergenic 40.0%
AGAAGATGTACCACTAGCAT+TGG + chr8.3:32387277-32387296 MS.gene056488:CDS 40.0%
ATGAATCATGGACACAGACA+AGG - chr8.3:32387193-32387212 None:intergenic 40.0%
ATGGAAACACTCTATGACTC+AGG + chr8.3:32388286-32388305 MS.gene056488:CDS 40.0%
CCTACTGATCCTTTCTTCAT+CGG - chr8.3:32388214-32388233 None:intergenic 40.0%
CCTTGCTTCATTTGTACTCT+TGG - chr8.3:32388800-32388819 None:intergenic 40.0%
CGATTCTTCAATCTCAACAC+CGG + chr8.3:32386562-32386581 MS.gene056488:CDS 40.0%
CTTGAAAACTTACAGAGAGG+TGG - chr8.3:32388465-32388484 None:intergenic 40.0%
CTTGAGCACAATCAATGTGA+CGG - chr8.3:32386783-32386802 None:intergenic 40.0%
GAAATGGAAAACCTTGATGG+CGG - chr8.3:32386659-32386678 None:intergenic 40.0%
GCACATCATCTTAAACCCTT+AGG - chr8.3:32387232-32387251 None:intergenic 40.0%
GCTGAAGTTCTTTACTTCCA+TGG + chr8.3:32389193-32389212 MS.gene056488:intron 40.0%
TAGTGAAACGCGAAGATTTG+TGG + chr8.3:32386943-32386962 MS.gene056488:CDS 40.0%
TCCATCCCCAAAACATTAGA+GGG - chr8.3:32389102-32389121 None:intergenic 40.0%
TGTTTCAGGCAAGATTACTC+CGG + chr8.3:32389250-32389269 MS.gene056488:intron 40.0%
TTTCTCTTCCAAGAAGTTGG+GGG + chr8.3:32388336-32388355 MS.gene056488:CDS 40.0%
! AAATGCTTGATGGTTTCCCT+TGG + chr8.3:32388898-32388917 MS.gene056488:intron 40.0%
! CCAAGAGTACAAATGAAGCA+AGG + chr8.3:32388797-32388816 MS.gene056488:CDS 40.0%
! CGACATTTAAGATGAGATGG+AGG + chr8.3:32387935-32387954 MS.gene056488:intron 40.0%
! GTACAGACACTACTGATTGA+AGG + chr8.3:32387075-32387094 MS.gene056488:intron 40.0%
! TCTGTTGAAGAACTTTGGGA+TGG + chr8.3:32389312-32389331 MS.gene056488:CDS 40.0%
! TGTGGATTACCTCTAAACTC+TGG + chr8.3:32386961-32386980 MS.gene056488:CDS 40.0%
! TTCTTCTTTTGCAGATCCAC+TGG + chr8.3:32388182-32388201 MS.gene056488:intron 40.0%
! TTTAAGATGATGTGCACTGC+AGG + chr8.3:32387237-32387256 MS.gene056488:intron 40.0%
!! AATGACATCACTTTGAAGCC+AGG - chr8.3:32388680-32388699 None:intergenic 40.0%
AAAGTCCTGTCCAATGCTAG+TGG - chr8.3:32387290-32387309 None:intergenic 45.0%
AACACTCTATGACTCAGGCA+AGG + chr8.3:32388291-32388310 MS.gene056488:CDS 45.0%
AACCTAACTTAGCCAGCACA+TGG + chr8.3:32388257-32388276 MS.gene056488:CDS 45.0%
CAGCATATGCTGCATTGCTT+GGG + chr8.3:32388037-32388056 MS.gene056488:intron 45.0%
CATTCCACTTGATTGACAGC+AGG - chr8.3:32388388-32388407 None:intergenic 45.0%
CCGATGAAGAAAGGATCAGT+AGG + chr8.3:32388211-32388230 MS.gene056488:CDS 45.0%
CTCCATCCCCAAAACATTAG+AGG - chr8.3:32389103-32389122 None:intergenic 45.0%
CTTCGCTGGGGATTACAAAT+GGG + chr8.3:32388760-32388779 MS.gene056488:CDS 45.0%
GTTTCAGGCAAGATTACTCC+GGG + chr8.3:32389251-32389270 MS.gene056488:intron 45.0%
TAACTTAGCCAGCACATGGA+AGG + chr8.3:32388261-32388280 MS.gene056488:CDS 45.0%
TCAAGTCTATGGCAACGAGA+AGG + chr8.3:32386798-32386817 MS.gene056488:CDS 45.0%
TCTTCGCTGGGGATTACAAA+TGG + chr8.3:32388759-32388778 MS.gene056488:CDS 45.0%
TGCTCAGATATCTCTTCGCT+GGG + chr8.3:32388747-32388766 MS.gene056488:CDS 45.0%
TTTCAGGCAAGATTACTCCG+GGG + chr8.3:32389252-32389271 MS.gene056488:intron 45.0%
! ATGGTTTCCCTTGGTCTTTC+TGG + chr8.3:32388907-32388926 MS.gene056488:intron 45.0%
! ATGTACCACTAGCATTGGAC+AGG + chr8.3:32387282-32387301 MS.gene056488:CDS 45.0%
! TTTGAAGCCAGGTTGTTCCA+GGG - chr8.3:32388669-32388688 None:intergenic 45.0%
!! GTGTCAGTGTTTGTTGTGTC+CGG + chr8.3:32387164-32387183 MS.gene056488:intron 45.0%
!! TTCCATGTGCTGGCTAAGTT+AGG - chr8.3:32388262-32388281 None:intergenic 45.0%
!!! ATGTTTTGGGGATGGAGAGT+TGG + chr8.3:32389106-32389125 MS.gene056488:intron 45.0%
!!! TCCCTCTAATGTTTTGGGGA+TGG + chr8.3:32389098-32389117 MS.gene056488:intron 45.0%
!!! TCATTTTTTAAAATTATTAT+TGG + chr8.3:32387134-32387153 MS.gene056488:intron 5.0%
AAGTGGAATGCCATCCTTCC+TGG + chr8.3:32388398-32388417 MS.gene056488:CDS 50.0%
AGTCTATGGCAACGAGAAGG+AGG + chr8.3:32386801-32386820 MS.gene056488:CDS 50.0%
ATGGACACAGACAAGGACAC+CGG - chr8.3:32387186-32387205 None:intergenic 50.0%
CAGCGAAGAGATATCTGAGC+AGG - chr8.3:32388748-32388767 None:intergenic 50.0%
CCAAGCAATGCAGCATATGC+TGG - chr8.3:32388039-32388058 None:intergenic 50.0%
CCAGCATATGCTGCATTGCT+TGG + chr8.3:32388036-32388055 MS.gene056488:intron 50.0%
CTGCTCAGATATCTCTTCGC+TGG + chr8.3:32388746-32388765 MS.gene056488:CDS 50.0%
GAGCAAATCCCCCAACTTCT+TGG - chr8.3:32388347-32388366 None:intergenic 50.0%
GATCCTTTCTTCATCGGAGC+AGG - chr8.3:32388208-32388227 None:intergenic 50.0%
GCTCAGATATCTCTTCGCTG+GGG + chr8.3:32388748-32388767 MS.gene056488:CDS 50.0%
GTGTCTAACACCGACACAAG+TGG + chr8.3:32387104-32387123 MS.gene056488:intron 50.0%
TACAGAGAGGTGGACACCTT+TGG - chr8.3:32388455-32388474 None:intergenic 50.0%
TCCACTTGATTGACAGCAGG+AGG - chr8.3:32388385-32388404 None:intergenic 50.0%
TCCTCCTGCTGTCAATCAAG+TGG + chr8.3:32388381-32388400 MS.gene056488:CDS 50.0%
TCTATGACTCAGGCAAGGCA+CGG + chr8.3:32388296-32388315 MS.gene056488:CDS 50.0%
TTCCATTGCCTTCCATGTGC+TGG - chr8.3:32388272-32388291 None:intergenic 50.0%
TTGAAGCCAGGTTGTTCCAG+GGG - chr8.3:32388668-32388687 None:intergenic 50.0%
! CATGAACAAATGAGGCACCC+CGG - chr8.3:32389272-32389291 None:intergenic 50.0%
! TATTCACCTTTGGGTTCCCC+TGG + chr8.3:32388649-32388668 MS.gene056488:CDS 50.0%
!! CTTTGAAGCCAGGTTGTTCC+AGG - chr8.3:32388670-32388689 None:intergenic 50.0%
AGCCAGCACATGGAAGGCAA+TGG + chr8.3:32388267-32388286 MS.gene056488:CDS 55.0%
AGGTACCTAAGCCGACGGAA+GGG - chr8.3:32386597-32386616 None:intergenic 55.0%
CTATGACTCAGGCAAGGCAC+GGG + chr8.3:32388297-32388316 MS.gene056488:CDS 55.0%
GTTGTTCCAGGGGAACCCAA+AGG - chr8.3:32388658-32388677 None:intergenic 55.0%
TAAGCCGACGGAAGGGATCT+TGG - chr8.3:32386590-32386609 None:intergenic 55.0%
TGGAATGCCATCCTTCCTGG+AGG + chr8.3:32388401-32388420 MS.gene056488:CDS 55.0%
TGGCCTGCTCCGATGAAGAA+AGG + chr8.3:32388202-32388221 MS.gene056488:CDS 55.0%
TTGCCAGGTACCTAAGCCGA+CGG - chr8.3:32386602-32386621 None:intergenic 55.0%
! GAAGTTGGGGGATTTGCTCG+AGG + chr8.3:32388348-32388367 MS.gene056488:CDS 55.0%
!! AAGATCCCTTCCGTCGGCTT+AGG + chr8.3:32386589-32386608 MS.gene056488:CDS 55.0%
AGCTTGTCCTGCCTCCAGGA+AGG - chr8.3:32388415-32388434 None:intergenic 60.0%
ATGCCATCCTTCCTGGAGGC+AGG + chr8.3:32388405-32388424 MS.gene056488:CDS 60.0%
CAGGTACCTAAGCCGACGGA+AGG - chr8.3:32386598-32386617 None:intergenic 60.0%
GACGGAAGGGATCTTGGCTC+CGG - chr8.3:32386584-32386603 None:intergenic 60.0%
GGAGCCAAGATCCCTTCCGT+CGG + chr8.3:32386583-32386602 MS.gene056488:CDS 60.0%
GGTACCTGGCAATCCGATCC+TGG + chr8.3:32386610-32386629 MS.gene056488:CDS 60.0%
TCTTCATCGGAGCAGGCCAG+TGG - chr8.3:32388201-32388220 None:intergenic 60.0%
TGGGTTCCCCTGGAACAACC+TGG + chr8.3:32388659-32388678 MS.gene056488:CDS 60.0%
TGTCCTGCCTCCAGGAAGGA+TGG - chr8.3:32388411-32388430 None:intergenic 60.0%
TTGTGCGACGAGGCCAGGAT+CGG - chr8.3:32386626-32386645 None:intergenic 60.0%
! TCAGGCAAGGCACGGGCTAT+AGG + chr8.3:32388304-32388323 MS.gene056488:CDS 60.0%
!! AACCTTGATGGCGGCAGCGA+CGG - chr8.3:32386650-32386669 None:intergenic 60.0%
!! CTTCCGTCGGCTTAGGTACC+TGG + chr8.3:32386596-32386615 MS.gene056488:CDS 60.0%
ACGCAGCTTGTCCTGCCTCC+AGG - chr8.3:32388419-32388438 None:intergenic 65.0%
GAGGCCAGGATCGGATTGCC+AGG - chr8.3:32386617-32386636 None:intergenic 65.0%
ACGGCTTGTGCGACGAGGCC+AGG - chr8.3:32386631-32386650 None:intergenic 70.0%
AGCCGTCGCTGCCGCCATCA+AGG + chr8.3:32386645-32386664 MS.gene056488:CDS 70.0%
CAGCGACGGCTTGTGCGACG+AGG - chr8.3:32386636-32386655 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 32386547 32389344 32386547 ID=MS.gene056488
chr8.3 mRNA 32386547 32389344 32386547 ID=MS.gene056488.t1;Parent=MS.gene056488
chr8.3 exon 32386547 32386666 32386547 ID=MS.gene056488.t1.exon1;Parent=MS.gene056488.t1
chr8.3 CDS 32386547 32386666 32386547 ID=cds.MS.gene056488.t1;Parent=MS.gene056488.t1
chr8.3 exon 32386772 32386822 32386772 ID=MS.gene056488.t1.exon2;Parent=MS.gene056488.t1
chr8.3 CDS 32386772 32386822 32386772 ID=cds.MS.gene056488.t1;Parent=MS.gene056488.t1
chr8.3 exon 32386906 32386982 32386906 ID=MS.gene056488.t1.exon3;Parent=MS.gene056488.t1
chr8.3 CDS 32386906 32386982 32386906 ID=cds.MS.gene056488.t1;Parent=MS.gene056488.t1
chr8.3 exon 32387259 32387346 32387259 ID=MS.gene056488.t1.exon4;Parent=MS.gene056488.t1
chr8.3 CDS 32387259 32387346 32387259 ID=cds.MS.gene056488.t1;Parent=MS.gene056488.t1
chr8.3 exon 32388196 32388471 32388196 ID=MS.gene056488.t1.exon5;Parent=MS.gene056488.t1
chr8.3 CDS 32388196 32388471 32388196 ID=cds.MS.gene056488.t1;Parent=MS.gene056488.t1
chr8.3 exon 32388646 32388894 32388646 ID=MS.gene056488.t1.exon6;Parent=MS.gene056488.t1
chr8.3 CDS 32388646 32388894 32388646 ID=cds.MS.gene056488.t1;Parent=MS.gene056488.t1
chr8.3 exon 32389258 32389344 32389258 ID=MS.gene056488.t1.exon7;Parent=MS.gene056488.t1
chr8.3 CDS 32389258 32389344 32389258 ID=cds.MS.gene056488.t1;Parent=MS.gene056488.t1
Gene Sequence

>MS.gene056488

ATGTCGAACGAGATTCGATTCTTCAATCTCAACACCGGAGCCAAGATCCCTTCCGTCGGCTTAGGTACCTGGCAATCCGATCCTGGCCTCGTCGCACAAGCCGTCGCTGCCGCCATCAAGGTTTTCCATTTCATCTATTTTCACACGCACTTTTTCGATTCGAAATCTCATTTTACACAATCATATTTGATTTTGATTTTGATCAATCAATTTGATATATTACAGGCTGGTTACCGTCACATTGATTGTGCTCAAGTCTATGGCAACGAGAAGGAGGTAATTCTTTCGTTGTTTGTTTTCGCAATGATAATGCAATTTCATGTGTGATTGAAATGATTCATTCATTCTTTCTGTTGTAGATTGGCTCTATGTTGAAGAAATTATTTAACGAAGGCGTAGTGAAACGCGAAGATTTGTGGATTACCTCTAAACTCTGGTTTGTTTCATTAATTAATTTTGTTTCCATGTTTTAGCTAATTCAATTATCTAATAATGCTGGTAGAATAGGTTTTTCAACTCTATATTGAAGTACAGACACTACTGATTGAAGGTGTGTAGTGTCTAACACCGACACAAGTGGAATTATGTCATTTTTTAAAATTATTATTGGTGTTGACGTGTCAGTGTTTGTTGTGTCCGGTGTCCTTGTCTGTGTCCATGATTCATAATTTTGAATCTATTACCTAAGGGTTTAAGATGATGTGCACTGCAGGAATACTGATCATGCTCCAGAAGATGTACCACTAGCATTGGACAGGACTTTGACAGACTTACAGCTTGATTACGTTGATTTGTATCTTGTATGTAATAATATTTCACTCAATCTTTAGATATTCTTCAACTACTTTGTTAAAAGTTTATGCATAATTATGATTTTACTACTCCCAATTATCTGATCATTAATTTCCTTCAAAGTTTAAATTGAAAATGAAATCTGAAGTATGAATTTCCAAGAAACATCCTTTCCATGTAGTCTTTTAGTTATGAAATTGCGAGGTTAATTAATTTACGCACTGCATTTTTTTTTACTGTAGGAAAAATCATGTTGTACACGGCTTGGATAATAACTTAATTGTCAAATGCATGATTGTTTGGAAAATGCTATGTGTTTATCTTTTTCAATTCTAAACTTTTCTTACATAGCAACATGGAAATACTCCCGTCTCATATTAAGTGTCACATTTGTATTATTTGCTTATCTCATTATTTATCACTTTAGAATATCAATGAAACTCCAATTACTTGTTTCACTAATAGACCTTCAAATTAGAGTTTCTCAATCAACCTAATTTCTCCATCTATATGGGTACTTAAGTGAATGAAGTTCATTTTTATGATAGAAACTAATACACTACATGATTTTCTTATGAAATGTGCGTAATCTTAAACGACATTTAAGATGAGATGGAGGGAGTAGTTGTTAAGCTATGCGCCTTGCAGATTTGACGACTATAAGTGCTTTTAATTCTAAGGAATTTAATTTGCACTTCCAGCATATGCTGCATTGCTTGGGTGCTATTATTTTATTCATTTTTTTATGCTTTCCTTCTGATGCATGTAAGATTTATTTCATCTGATTGCAAAATTTGGTGGTTTAATATATTATTTAGTACATTCTTAATTGTTTATTGATGATTCTTCTTTTGCAGATCCACTGGCCTGCTCCGATGAAGAAAGGATCAGTAGGCTTCAAAGCTGAAAATCTAGTGCAACCTAACTTAGCCAGCACATGGAAGGCAATGGAAACACTCTATGACTCAGGCAAGGCACGGGCTATAGGTGTAAGCAATTTCTCTTCCAAGAAGTTGGGGGATTTGCTCGAGGTTGCTCGTGTTCCTCCTGCTGTCAATCAAGTGGAATGCCATCCTTCCTGGAGGCAGGACAAGCTGCGTGATTTCTGTAATTCCAAAGGTGTCCACCTCTCTGTAAGTTTTCAAGTCTTGAATGATCATTATTTTTTTTCTGCACATTACATTGGCTATTTTCATGATTTTTTTTTTAGAGGATCTTTTCCGTTTGTTAAAACTTGAAATAAACCATTATTATTATATTTTTGAAGGATTTTCTCTAATTTAAAATGTGGTACTTCTAATGTTTAGGGATATTCACCTTTGGGTTCCCCTGGAACAACCTGGCTTCAAAGTGATGTCATTAAGCATCCAGTTCTTAATATGATTGCTGGGAAACTAGGCAAGACTCCTGCTCAGATATCTCTTCGCTGGGGATTACAAATGGGTCATAGTGTACTTCCCAAGAGTACAAATGAAGCAAGGATAAAAGAAAATTTTGATGTTTTTGATTGGGCTATACCTGAAGATTTGTTTGCTAAATTTTCTGAGATTCAACAGGTAAAATGCTTGATGGTTTCCCTTGGTCTTTCTGGTTTTAAGAACAGAATATATTAACTATATTGATTTCAGCTCTAGTTGTGAAGCAGCATAGCTAAAAATATTTGTTAGTCATCTCCTTCCATGTTATCAGCTATAAATAAGAATAAGACTTGATTTTGGATTCTTGATTTCCAATTAATATTGCTAACCCAAACCTATTTTCCCTCTAATGTTTTGGGGATGGAGAGTTGGAATTCATTTTTAGTTGAATCTAGATAAGCCTGTTGCTAGTTTTTTGACAGTATGAATCTATAAGGCTGAAGTTCTTTACTTCCATGGAAACATTGTCCAGTTTTATGACAGTGGCTTTTATTGTTTCAGGCAAGATTACTCCGGGGTGCCTCATTTGTTCATGAAACTTATGGTGGCTACAGATCTGTTGAAGAACTTTGGGATGGTGAAATCTAA

Protein sequence

>MS.gene056488.t1

MSNEIRFFNLNTGAKIPSVGLGTWQSDPGLVAQAVAAAIKAGYRHIDCAQVYGNEKEIGSMLKKLFNEGVVKREDLWITSKLWNTDHAPEDVPLALDRTLTDLQLDYVDLYLIHWPAPMKKGSVGFKAENLVQPNLASTWKAMETLYDSGKARAIGVSNFSSKKLGDLLEVARVPPAVNQVECHPSWRQDKLRDFCNSKGVHLSGYSPLGSPGTTWLQSDVIKHPVLNMIAGKLGKTPAQISLRWGLQMGHSVLPKSTNEARIKENFDVFDWAIPEDLFAKFSEIQQARLLRGASFVHETYGGYRSVEELWDGEI